BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1689 (PAB1689) DE:ATP-DEPENDENT RNA HELICASE related protein
(529 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75078 ATP-dependent RNA helicase related protein PAB1689 -... 1038 0.0
pir||G71081 probable helicase protein PH0917 - Pyrococcus horiko... 608 e-173
gb|AAK42189.1| ATP-dependent RNA helicase homolog [Sulfolobus so... 156 6e-37
gi|11499458 A. fulgidus predicted coding region AF1874 [Archaeog... 148 2e-34
gb|AAK41673.1| ATP-dependent RNA helicase homolog [Sulfolobus so... 145 9e-34
gb|AAK41637.1| ATP-dependent RNA helicase related protein [Sulfo... 142 8e-33
gi|11497691 ATP-dependent RNA helicase, putative [Archaeoglobus ... 109 1e-22
pir||G72595 hypothetical protein APE1232 - Aeropyrum pernix (str... 102 1e-20
sp|Q57828|Y383_METJA HYPOTHETICAL PROTEIN MJ0383 >gi|2128290|pir... 99 8e-20
pir||A71069 hypothetical protein PH1246 - Pyrococcus horikoshii ... 99 1e-19
pir||F71239 hypothetical protein PH0176 - Pyrococcus horikoshii ... 91 3e-17
pir||C69011 conserved hypothetical protein MTH1086 - Methanobact... 89 9e-17
pir||D72210 conserved hypothetical protein - Thermotoga maritima... 87 6e-16
pir||H64346 hypothetical protein homolog MJ0376 - Methanococcus ... 85 2e-15
sp|Q57821|Y376_METJA HYPOTHETICAL PROTEIN MJ0376 >gi|2826277|gb|... 85 2e-15
pir||B70333 hypothetical protein aq_371 - Aquifex aeolicus >gi|2... 70 7e-11
>pir||H75078 ATP-dependent RNA helicase related protein PAB1689 - Pyrococcus
abyssi (strain Orsay) >gi|5458445|emb|CAB49933.1|
(AJ248286) ATP-DEPENDENT RNA HELICASE related protein
[Pyrococcus abyssi]
Length = 529
Score = 1038 bits (2656), Expect = 0.0
Identities = 529/529 (100%), Positives = 529/529 (100%)
Query: 1 MSVYDVVVKRLSEIKGFKPEKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLAL 60
MSVYDVVVKRLSEIKGFKPEKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLAL
Sbjct: 1 MSVYDVVVKRLSEIKGFKPEKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLAL 60
Query: 61 HSLKDSSLFDRVIHVLPMRSIIEDIDRTAKEAFGFSRTKMMGSSEEFLHLFPLNITTVDT 120
HSLKDSSLFDRVIHVLPMRSIIEDIDRTAKEAFGFSRTKMMGSSEEFLHLFPLNITTVDT
Sbjct: 61 HSLKDSSLFDRVIHVLPMRSIIEDIDRTAKEAFGFSRTKMMGSSEEFLHLFPLNITTVDT 120
Query: 121 FTWDILKLNTKKITQVERGREFGYDYLTQASILTSLVIFDEAHFILEEPRMKTAFLAVLR 180
FTWDILKLNTKKITQVERGREFGYDYLTQASILTSLVIFDEAHFILEEPRMKTAFLAVLR
Sbjct: 121 FTWDILKLNTKKITQVERGREFGYDYLTQASILTSLVIFDEAHFILEEPRMKTAFLAVLR 180
Query: 181 FLMENNVPIIIMTATLSRGYFELFKKYAQNNGYYFEPEPLVPDENDPFIKRESKKNFEIQ 240
FLMENNVPIIIMTATLSRGYFELFKKYAQNNGYYFEPEPLVPDENDPFIKRESKKNFEIQ
Sbjct: 181 FLMENNVPIIIMTATLSRGYFELFKKYAQNNGYYFEPEPLVPDENDPFIKRESKKNFEIQ 240
Query: 241 FKTGNPLDFIDSAKRNAIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRMKPSHKA 300
FKTGNPLDFIDSAKRNAIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRMKPSHKA
Sbjct: 241 FKTGNPLDFIDSAKRNAIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRMKPSHKA 300
Query: 301 RLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVARYDEKNAE 360
RLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVARYDEKNAE
Sbjct: 301 RLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVARYDEKNAE 360
Query: 361 IIIIEDAPVHPYDGKKVERTIALMKESSTLNPRIPQTYQGIVDEIHGKTKTKVMSGVDRS 420
IIIIEDAPVHPYDGKKVERTIALMKESSTLNPRIPQTYQGIVDEIHGKTKTKVMSGVDRS
Sbjct: 361 IIIIEDAPVHPYDGKKVERTIALMKESSTLNPRIPQTYQGIVDEIHGKTKTKVMSGVDRS 420
Query: 421 RERKLRVLLKDPTKRSVDVLSEIKSMIKEEGPLLRDFLIPLEVDDEYVLVSPEKMLELAK 480
RERKLRVLLKDPTKRSVDVLSEIKSMIKEEGPLLRDFLIPLEVDDEYVLVSPEKMLELAK
Sbjct: 421 RERKLRVLLKDPTKRSVDVLSEIKSMIKEEGPLLRDFLIPLEVDDEYVLVSPEKMLELAK 480
Query: 481 RGLLQVRVGENEISVDSEAIAYKIAERIALGEKIVVKFTGKYDEERGIV 529
RGLLQVRVGENEISVDSEAIAYKIAERIALGEKIVVKFTGKYDEERGIV
Sbjct: 481 RGLLQVRVGENEISVDSEAIAYKIAERIALGEKIVVKFTGKYDEERGIV 529
>pir||G71081 probable helicase protein PH0917 - Pyrococcus horikoshii
>gi|3257330|dbj|BAA30013.1| (AP000004) 526aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 526
Score = 608 bits (1551), Expect = e-173
Identities = 316/529 (59%), Positives = 401/529 (75%), Gaps = 14/529 (2%)
Query: 1 MSVYDVVVKRLSEIKGFKPEKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLAL 60
+ ++ +++L++ KGFKPE+RP+LE A + SS + PFL++QAPTGYGKT LS +LA+
Sbjct: 10 LRAFEDALQKLAKAKGFKPERRPLLEGAFHFITSSEKPPFLILQAPTGYGKTLLSYALAV 69
Query: 61 HSLKDSSLFDRVIHVLPMRSIIEDIDRTAKEAFGFSRTKMMGSSEEFLHLFPLNITTVDT 120
HSL D+ LFDR+IHVLPMRSIIEDI +TA+EAFGFSRTKMMGSS EFLHLFPLNITT DT
Sbjct: 70 HSLYDAKLFDRIIHVLPMRSIIEDIQKTAEEAFGFSRTKMMGSSGEFLHLFPLNITTADT 129
Query: 121 FTWDILKLNTKKITQVERGREFGYDYLTQASILTSLVIFDEAHFILEEPRMKTAFLAVLR 180
FTWD+LKLNTK+ +++ G+EFGYDYLTQASILTSLVIFDEAHF+LE+ M TAFL+V+
Sbjct: 130 FTWDLLKLNTKRRHRIKAGKEFGYDYLTQASILTSLVIFDEAHFLLEDKSMVTAFLSVIE 189
Query: 181 FLMENNVPIIIMTATLSRGYFELFKKYAQNNGYYFEPEPLVPDENDPFIKRESKKNFEIQ 240
FL VPI+IMTATLS + ++FKKYA N Y F + L P+ +DPFIKRE KK+ +I+
Sbjct: 190 FLTSQKVPIVIMTATLSEAHKKIFKKYANKNNYNF--KVLDPENDDPFIKRELKKDIKIE 247
Query: 241 FKTGNPLDFIDSAKRNAIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRMKPSHKA 300
F G+PL+FI+ +RNAIIVNSVKRAVEIFD+AK P E + +MLIHGRM SHK
Sbjct: 248 FNRGDPLNFIEPGRRNAIIVNSVKRAVEIFDRAKNIWP----ERDRVMLIHGRMTSSHKR 303
Query: 301 RLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVARY-DEKNA 359
LI LR+W+ + FL+IGTQAVEAG+DFSVD+MITD APINSLIQRFGRVARY +EK
Sbjct: 304 DLINCLRKWQKEGDFLLIGTQAVEAGIDFSVDLMITDRAPINSLIQRFGRVARYKNEKEG 363
Query: 360 EIIIIEDAPVHPYDGKKVERTIALMKESSTLNPRIPQTYQGIVDEIHGKTKTKVMSGVDR 419
EIII+EDAP PY KVE+T+ LMK L PRIP+TYQ IV E+H + V+R
Sbjct: 364 EIIILEDAPYGPYPEDKVEKTLDLMKRGQIL-PRIPETYQTIVTEVH----RSITKNVNR 418
Query: 420 SRERKLRVLLKDPTKRSVDVLSEIKSMIKEEGPLLRDFLIPLEVDDEYVLVSPEKMLELA 479
+ +L L+KDP+KR+ DVLS ++S+ ++RDFLIPL V+D+ VL++P K+LEL
Sbjct: 419 ELKGELVRLMKDPSKRAPDVLSAVESLTVRGISIMRDFLIPLLVEDDMVLITPRKLLELY 478
Query: 480 KRGLLQVRVGENEISVDSEAIAYKIAERIALGEKIVVKFTGKYDEERGI 528
+ L++++ EI S AYK+A+ +ALGE I + F G YD ERGI
Sbjct: 479 SKELVEIKGFNKEIK--SLEDAYKVAKSVALGENIEIIFIGNYDWERGI 525
>gb|AAK42189.1| ATP-dependent RNA helicase homolog [Sulfolobus solfataricus]
Length = 515
Score = 156 bits (390), Expect = 6e-37
Identities = 127/413 (30%), Positives = 206/413 (49%), Gaps = 40/413 (9%)
Query: 20 EKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLALHSLKDSSLFDRVIHVLPMR 79
E+R +EE L L+ ++++APTGYGKTTL++ LA D L RVIHVLP R
Sbjct: 32 EERKGIEETL---LNLENGHSVILKAPTGYGKTTLTMILANAVSSDIDLGSRVIHVLPYR 88
Query: 80 SIIEDIDRTAKEAF--GFSRTKMMGSSEEFLHLFP-----LNITTVDTFTWDILKLNTKK 132
+I++D+ K G TK +G+ + P +N+TT+DTF ++ KL T
Sbjct: 89 AIVQDLYLKLKNYADRGVIYTKNIGAQDMDYQDSPFFMKKVNVTTLDTFILNLFKLPTVD 148
Query: 133 ITQVERGREFGYDYLTQASILTSLVIFDEAHFILEEPRMKTAFLAVLRFLMENNVPIIIM 192
+ + Y++ +A I +S+VIFDE H + E+ + A LA L L + VPI++
Sbjct: 149 FKLIFKNYGSHYEF-PRALIYSSIVIFDEFHLLGEDGKSLGAGLAALEVLRDAGVPIVVT 207
Query: 193 TATLSRGYFE-LFKKYAQNNGYYFEPEPLVPDENDPFIKRESKKNFEIQFKTGNPLDFID 251
+AT+ +G L K +N V + +D I R+ N + + +
Sbjct: 208 SATIDKGLERVLMNKLGKN--------VKVVNADDFKIDRKIYVNVLENDEISITEEKVK 259
Query: 252 SAKRNAIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRMKPSHKARLIEKLREWKN 311
KR ++ N+ A+E + KL +LIH + + + K+ E K
Sbjct: 260 EGKRVLLVYNTRMGAIEAYK-------KLKGRGLSPILIHSKFSKKDRIDKVNKINEAK- 311
Query: 312 KESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVARYDEKNAEIIIIEDAPVHP 371
L++ TQ +EAG+D S DV+IT+A+P ++LIQR GRVARY K + + + P
Sbjct: 312 ----LVVSTQVIEAGIDTSFDVLITEASPSHNLIQRAGRVARYG-KGGRGKLEGEVYIFP 366
Query: 372 YDGK-----KVERTIALMKESSTL--NPRIPQTYQGIVDEIHGKTKTKVMSGV 417
+ GK +V+ T+ ++E T+ N I + Y ++D I K + + + V
Sbjct: 367 FSGKVYDEREVKETVERVRELKTIDENLLIERDYTEVIDSILAKDLSVIDNSV 419
>gi|11499458 A. fulgidus predicted coding region AF1874 [Archaeoglobus fulgidus]
>gi|7483732|pir||A69484 hypothetical protein AF1874 -
Archaeoglobus fulgidus >gi|2648674|gb|AAB89382.1|
(AE000973) A. fulgidus predicted coding region AF1874
[Archaeoglobus fulgidus]
Length = 546
Score = 148 bits (369), Expect = 2e-34
Identities = 124/493 (25%), Positives = 225/493 (45%), Gaps = 71/493 (14%)
Query: 11 LSEIKGFKPEK-------RPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLALHSL 63
LSEI G EK RP + A+ ++ + VI+APTGYGK+T+S ++A +SL
Sbjct: 4 LSEIYGEIVEKWFGGRDERPFIANAIREIEKNWDRNIFVIEAPTGYGKSTISATIAAYSL 63
Query: 64 KDSSLFDRVIHVLPMRSIIEDIDRTAKEAFGFSRTKMMGSSEEFLHLF-PLNITTVDTFT 122
++ + I P+R+++ED K FG K + + +L P+ +TT+DT
Sbjct: 64 QEEL---KSIIAFPLRTLLEDQYNKFKGLFGNKLGKRYMHNPDSPYLIKPVTLTTIDTLA 120
Query: 123 WDILKLNTKKITQVER------GREFGYDYLTQASILTSLVIFDEAHFILEEPRMKTAFL 176
+ + + + + + G+ +QAS+ S ++ DE H + + +
Sbjct: 121 LTLFGIPPEDLDKAVKYWDGTSSGSLGHYLFSQASVALSNIVLDEVHLLADSTKSLNFLF 180
Query: 177 AVLRFLMENNVPIIIMTATLSRGYFELFKKYAQNNGYYFEPEPLVPDENDPF----IKRE 232
A++ ++N+ +++M+AT+ + K+ F P+ + + N+ F ++
Sbjct: 181 ALMHAAIDNDQKLVLMSATIPEALKKRIKE--------FNPDVCMVEFNESFDRKFVEER 232
Query: 233 SKKNFEIQFKTGNPLDFIDSAKRN-----------AIIVNSVKRAVEIFDQAKEDAPKLG 281
KK + I ++ S +R ++ N++ AV ++ KE P
Sbjct: 233 RKKKYRINLIALASVEKFGSLERILLEGSKKFSKITVVFNTIGDAVYFYNNIKEKIP--- 289
Query: 282 FEEEEIMLIHGRMKPSHKARLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAAPI 341
E + +L+H R + + E L E K E F+I+ TQ +EAGVD S ++ IT+ AP
Sbjct: 290 --EFKKLLLHSRFSEMDREKKAELLAEMKKSEKFVIVTTQVIEAGVDISSNLFITEIAPA 347
Query: 342 NSLIQRFGRVARYDEKNAEIII------------IEDAPVHPYDGKKVERTIALMKESST 389
+SLIQR GR RY E+ E+ I +D YD T+ + E
Sbjct: 348 SSLIQRLGRFLRYGEREGEVYIWYEVDDRGELARWKDDRYKVYDYSLTALTLEKLAEMKN 407
Query: 390 LNPRIPQTYQGIVDEIHGKTKTKVMSGVDRSRERKLRVLLKDPTKRSVDVLSEIKSMIKE 449
+ + Y ++D ++G+ + VD LR +L + ++ S ++ +
Sbjct: 408 FSVHV--DYDRLLD-VYGEFE------VDERGVNDLRRILMN----FENINSAVEKFFEL 454
Query: 450 EGPLLRD-FLIPL 461
EG +RD F+IP+
Sbjct: 455 EGSFVRDSFIIPV 467
>gb|AAK41673.1| ATP-dependent RNA helicase homolog [Sulfolobus solfataricus]
Length = 515
Score = 145 bits (363), Expect = 9e-34
Identities = 115/400 (28%), Positives = 200/400 (49%), Gaps = 38/400 (9%)
Query: 20 EKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLALHSLKDSSLFDRVIHVLPMR 79
E+R +EE L + L + + ++++APTGYGKTTL++ LA + + RVIHVLP R
Sbjct: 32 EERKGIEETL-RYLENGHN--VILKAPTGYGKTTLTMILANAVSSNIDIGSRVIHVLPYR 88
Query: 80 SIIEDIDRTAKEAF--GFSRTKMMGSSEEFLHLFP-----LNITTVDTFTWDILKLNTKK 132
+I++D+ K+ G TK +G+ + H P +N+TT+DTF ++ KL T
Sbjct: 89 AIVQDLYLKLKKYADKGIIYTKSIGAQDMDYHDSPFFMKKVNVTTLDTFILNLFKLPTID 148
Query: 133 ITQVERGREFGYDYLTQASILTSLVIFDEAHFILEEPRMKTAFLAVLRFLMENNVPIIIM 192
+ + Y++ +A I +S+VIFDE H + E+ + A L+ + L + VPI++
Sbjct: 149 FKLIFKNYGSHYEF-PRALIYSSIVIFDEFHLLGEDGKSLGAGLSAIEVLSDAGVPIVVT 207
Query: 193 TATLSRGYFELFKKYAQNNGYYFEPEPLVPDENDPFIKRESKKNFEIQFKTGNPLDFIDS 252
+AT+ +G + +G D ++ K I + +
Sbjct: 208 SATIDKGLERVLMDKLGKSGKVVYASDFKIDRKI-YVNELEKDEISIADEK------VKE 260
Query: 253 AKRNAIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRMKPSHKARLIEKLREWKNK 312
KR ++ N+ A+E + + KE +LIH + + + K+ + K
Sbjct: 261 GKRVLLVYNTRMGAIEAYWKLKERGLSP-------ILIHSKFSKKDRIDKVNKINDAK-- 311
Query: 313 ESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVARYDEKNAEIIIIEDAPVHPY 372
L++ TQ +EAG+D S DV+IT+A P ++LIQR GRVARY K + + + + P+
Sbjct: 312 ---LVVSTQVIEAGIDTSFDVLITEACPSHNLIQRAGRVARYG-KGGKGKLEGEVYIFPF 367
Query: 373 DGK-----KVERTIALMKESSTLNPR--IPQTYQGIVDEI 405
GK +V+ T+ +++ T++ I + Y +D I
Sbjct: 368 SGKVYNEGEVKETMKRVRKLKTIDESLLIERDYTKEIDSI 407
>gb|AAK41637.1| ATP-dependent RNA helicase related protein [Sulfolobus
solfataricus]
Length = 572
Score = 142 bits (355), Expect = 8e-33
Identities = 130/415 (31%), Positives = 196/415 (46%), Gaps = 89/415 (21%)
Query: 42 VIQAPTGYGKTTLSLSLA-LHSLKDSSLFDRVIHVLPMRSIIEDIDRTAKE-----AFGF 95
++ PTGYGKTTLSL + + LK + F R+IHV+P RS+ +DI +A E A +
Sbjct: 53 ILTFPTGYGKTTLSLEIVRMIDLKPTQNFSRLIHVVPTRSLAKDIQNSACERGLGFAVQY 112
Query: 96 SRTKMMGSSEEFLHLFPLNITTVDTFTWDILKLNTKKITQVERGREFGYDYLTQASILTS 155
S T S FL F ITT D+F LN K + E G+ L + I TS
Sbjct: 113 SFTPSHIKSPLFLAKFI--ITTYDSFL-----LNLYKASIGEPFSYHGHYDLPRFGIYTS 165
Query: 156 LVIFDEAHFILEEPRMKTAFLAVLRFLMENNVPIIIMTATLSRGYFELFKKYAQNN---- 211
LV FDE H ++ E T+ L +R L + V +I+ +AT S+ E + +N
Sbjct: 166 LVHFDEFH-LMNEGNSWTSLLGAVRHLSKVGVNMILSSATPSKSVEEELIRMMENRKVVR 224
Query: 212 ---------------------GYY-------------FEPEPLVPDENDPFIKRESKKNF 237
GYY E + PD N F+ +E
Sbjct: 225 LAVVNEYGESVKNRNCVKVSEGYYECEVGSVKYTSVEVEDKINAPDININFLDKED---- 280
Query: 238 EIQFKTGNPLDFIDSAKRNA-----IIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHG 292
D + +RN +IVN+V +A+ ++++ ++ +P LIH
Sbjct: 281 ----------DVLGVVRRNKDKKIMVIVNTVDKAITLYEKLRDLSP---------CLIHS 321
Query: 293 RMKPSHKARLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVA 352
R K + EKLR KE +II TQ +E GV+ S +VMIT+ API S++QR GR+
Sbjct: 322 RFKIGDRD---EKLR----KECNIIIATQVIEVGVNISSEVMITEQAPITSIVQRVGRLL 374
Query: 353 RYDEKN-AEIIIIEDAPVHPYDGKKVERTI-ALMKESSTLNPRIPQTYQGIVDEI 405
R ++K+ E+ I + +PYD +VE TI L + + ++ ++P +Y IVD +
Sbjct: 375 RDNKKDKGELYIWKSGNYYPYDKDEVENTIKELESKKNDISLKVPSSYGEIVDRV 429
>gi|11497691 ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus]
>gi|7446071|pir||G69258 ATP-dependent RNA helicase
homolog - Archaeoglobus fulgidus
>gi|2650581|gb|AAB91160.1| (AE001102) ATP-dependent RNA
helicase, putative [Archaeoglobus fulgidus]
Length = 759
Score = 109 bits (269), Expect = 1e-22
Identities = 102/394 (25%), Positives = 184/394 (45%), Gaps = 43/394 (10%)
Query: 6 VVVKRLSEIKGFKPEKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLALHSLKD 65
+V+K ++ G P + +EA+D +L L+I+APTG GKT SL ++ L D
Sbjct: 1 MVIKAFRKLTGHSPYEYQ--KEAMDNLLEGKS---LIIRAPTGAGKTEASLIPFIYGLND 55
Query: 66 SSLFDRVIHVLPMRSIIEDIDRTAKEAFGFSRTKMM----GSSEEFLHLFPLNITTVDTF 121
L ++I+ LP R+++E I A + F + ++ + L + +TT+D
Sbjct: 56 Y-LPPQLIYSLPTRTLVESIGERAIKYASFKKLRVAIHHGKKATSSLFEEDIIVTTIDQT 114
Query: 122 TWDILKLNTKKITQVERGREFGYDYLTQASILTSLVIFDEAHFILEEPRMKTAFLAVLRF 181
L + + + +G ++ I ++L +FDE H + E ++TA A+
Sbjct: 115 AGAYLSV------PLSMPKRWGNIFV--GGIASALTVFDEVHTLDPEKGLQTA-AAIAMQ 165
Query: 182 LMENNVPIIIMTATLSRGYFELFKKYAQNNGYYFEPEPLVPDENDPFIKRESKKNFEI-- 239
+ +P IIM+ATL + E K+ + NG E ++ +N+ IK + E+
Sbjct: 166 SAKLGLPSIIMSATLPDVFIERVKERIEKNGGKVE---IMDVKNESEIKSRRNRKVELIN 222
Query: 240 ----QFKTGNPLDFIDSAKRNAIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRMK 295
L ++ ++ ++VN+V+RA ++ ++ + I L+H R
Sbjct: 223 RPDEMLTADTVLKEAENCRKLVVVVNTVERAQNLYLDLRKKI------DYPIFLLHSRYL 276
Query: 296 PSHKA---RLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVA 352
+A + EK+ K + I TQ +E G+D S +++++ API++LIQR GR A
Sbjct: 277 EKDRAEKEKSFEKVFGKNGKGECIFISTQVIEVGMDISSPIILSEVAPIDALIQRAGRCA 336
Query: 353 RYDEKNAEIIII-----EDAPVHPYDGKKVERTI 381
R+ N E + P PY + +E TI
Sbjct: 337 RWG-GNGEFHVFGLARDSSNPYAPYLKELIESTI 369
>pir||G72595 hypothetical protein APE1232 - Aeropyrum pernix (strain K1)
>gi|5104907|dbj|BAA80221.1| (AP000061) 570aa long
hypothetical protein [Aeropyrum pernix]
Length = 570
Score = 102 bits (252), Expect = 1e-20
Identities = 105/415 (25%), Positives = 182/415 (43%), Gaps = 32/415 (7%)
Query: 7 VVKRLSEIKGFKPEKRPVL-------EEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLA 59
+VKR ++G K L E + ++ + + + APTG GKT + ++
Sbjct: 17 MVKRRIHVEGAKKAVNEALLNSQAKAAEEICRIAYESPGGVVFLGAPTGAGKTEVFMAPL 76
Query: 60 LHSLKDSS-LFDRVIHVLPMRSIIED-IDR--TAKEAFGFSRTKMMGSSEEFLHLFPLNI 115
L S + R V PM S+I+ +DR T+ E G S FL+ P+ +
Sbjct: 77 LASFASKRPIAARGFLVEPMHSLIKAMVDRLKTSIETLGVSEDHGETVQPTFLYTAPITV 136
Query: 116 TTVDTFTWDILKLNTKKITQVERGREFGYDYLTQASILTSLVIFDEAHFILEEPRMKTAF 175
TT DT+ + +I E G E G + TS +FDEAH + +E +
Sbjct: 137 TTPDTYFYGFAASRVYRILTHE-GVETGRFSMPVGLQATSYTVFDEAHLVQDEVFLSPRL 195
Query: 176 LA-VLRFLMENNVPIIIMTATLSRGYFELFKKYAQNNGYYFEPEPLVPDENDPFIKRESK 234
L+ V+ L I++ +ATL Y + ++ + + E L P I E K
Sbjct: 196 LSLVVAALARAGGLIVVSSATLPSYYKTVIRE--KLGDWRVEEVELDHTVLSPKIDVEVK 253
Query: 235 KNFEIQFKTGNPLDFIDSAKRNAIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRM 294
N D +D + ++VN+V +++ ++ K +++L+H
Sbjct: 254 NN-------SLEPDDVDCNVKGLVLVNTVSKSIRVYKSLKTRC-----SNSKVLLLHSLF 301
Query: 295 KPSHKARLIEKLREWKNKES--FLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVA 352
K K IE L++ ++ + + TQ +E GVD + + T+ API+S+IQR GR+
Sbjct: 302 KRRDKNSKIELLQKLLKEQDNGVIAVATQVLEVGVDLDFEALYTETAPIDSVIQRLGRIG 361
Query: 353 RYDEKNAEIIIIEDAPVHPYDGKKVERTIALMKE-SSTLNPRIPQTYQGIVDEIH 406
R + II + HPY K ++ +M + + T P I +T +V+ ++
Sbjct: 362 RRRGRGYAIIYNAETH-HPYPEKLYLKSKEIMDQLAGTYTPSI-RTSSDLVNTVY 414
>sp|Q57828|Y383_METJA HYPOTHETICAL PROTEIN MJ0383 >gi|2128290|pir||G64347 hypothetical
protein MJ0383 - Methanococcus jannaschii
>gi|1591089|gb|AAB98371.1| (U67491) ATP-dependent RNA
helicase, putative [Methanococcus jannaschii]
Length = 614
Score = 99.5 bits (244), Expect = 8e-20
Identities = 98/353 (27%), Positives = 167/353 (46%), Gaps = 62/353 (17%)
Query: 41 LVIQAPTGYGKTTLSLSLALHS-LKDSSLFDRVIHVLPMRSIIE-DIDRTAK------EA 92
+VI+ PT GKT ++ L+ + + R+I+VLP RS++E ++R E
Sbjct: 36 VVIEIPTAGGKTEAAIIPYLYQFISNDWKVPRLIYVLPTRSLVEKQVERIRNYIKKILEI 95
Query: 93 FGFSRTKM-----------MGSSEEFLHLFPLNITTVDTFTWDILKLNTKKITQVERGRE 141
G+S+ K+ G E L + +TT DTF + + T G
Sbjct: 96 KGYSKDKVEELAKKIVQVEYGLEETHAFLGFVVLTTWDTFLYGLAAHRTV-------GDR 148
Query: 142 FGYDYLTQASILTSLVIFDEAHFILEEPRMKTAFLA-VLRFLMENNVPIIIMTATLSRGY 200
F + +I SLV+FDE +E + V++ L+E NVP++ MTATL
Sbjct: 149 FTFPC---GAIAQSLVVFDEIQMYQDESLYMPRLIGLVVKRLVEANVPLVFMTATLPTEL 205
Query: 201 FELFKKYAQNNGYYFEPEPLVPDENDPFIKRESKKNFEIQFK--------TGNPLDFIDS 252
++ + + EP+ + D K+ + ++FK + I+
Sbjct: 206 KKILGIH--------DEEPITVNPEDT--KKPERGEVVVEFKEKLSDEELSNEIKKAINE 255
Query: 253 AKRNAIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRMKPSHKARLIEKLREWKNK 312
K+ II N+V A+E++++ K+ LG +L+H R +A EK ++
Sbjct: 256 GKKVLIIKNTVNSAIEVYEKVKQ----LG----NSLLLHSRFTVEDRA---EKEKDIDKA 304
Query: 313 ESFLIIGTQAVEAGVDFS-VDVMITDAAPINSLIQRFGRVARYDEKNAEIIII 364
E +I+ TQ VEAG+D + V ++ITD AP+++LIQR GR AR + ++I++
Sbjct: 305 E--IIVATQVVEAGLDLTNVGLVITDLAPLDALIQRIGRCARRKGERGKVIVV 355
>pir||A71069 hypothetical protein PH1246 - Pyrococcus horikoshii
>gi|3257664|dbj|BAA30347.1| (AP000005) 727aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 727
Score = 98.7 bits (242), Expect = 1e-19
Identities = 110/438 (25%), Positives = 197/438 (44%), Gaps = 43/438 (9%)
Query: 8 VKRLSEIKGFKPEKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLA---LHSLK 64
++ L +I+ F K P + ++ SS +++ APTGYGKT +L A H K
Sbjct: 214 IRFLPDIEQFVEMKIPREKWRPLQLSSSMTEGDVILYAPTGYGKTEAALLWANKNAHRTK 273
Query: 65 DSSLFDRVIHVLPMRSIIEDIDRTAKEAFGFSRTKMMGSSEEFLHLFPLNITTVDTFT-- 122
+ R+ ++LP ++ I + R E F + S ++L+ ++ +
Sbjct: 274 -KGISSRIFYILPYKASINAMHRRLLEMFKDPGLVGLLHSSSGIYLYSSSLEYKRLLSLY 332
Query: 123 ---WDILKLNTK-KITQVERGREFGYDYLTQASILTSLVIFDEAHFILEEPRMKTAFLAV 178
+ +K+ T +I + G G+ +T ++ SL+IFDE H E + LA+
Sbjct: 333 GKIYSPIKITTPFQIMKAFFG--VGFFEITLVELINSLLIFDEIHAY--ESNILGIILAM 388
Query: 179 LRFLMENNVPIIIMTATLSRGYFELFKKYAQNNGYYFEPEPLV--PDENDPFIKRESKKN 236
L L E ++MTAT + EL K P+ L P+E D F R
Sbjct: 389 LELLKEKRAKALVMTATFPKFLEELIKSI-------LNPKELKTPPEEADKFT-RHRVNV 440
Query: 237 FEIQFKTGNPLDFIDSAKRNAIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRMKP 296
+ +T + +F + I N+V ++E++ + KE +MLIHGR
Sbjct: 441 IDGDIRTLDSEEF-PGPRPILIACNTVNTSIEVYSKLKESGAN-------VMLIHGRFTY 492
Query: 297 SHKARLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVARYD- 355
+ + L + F ++ TQ +E +D +IT+ AP+++LIQRFGRV R
Sbjct: 493 GDREDKEKMLMNSLSDFDF-VVATQVIEVSLDIDFGSIITEPAPLDALIQRFGRVNRRGF 551
Query: 356 EKNAEIIII-----EDAPVH-PYDGKKVERTIALMKESSTLNPRIPQTYQGIVDEIHGKT 409
K ++ ++ +D V+ PYD VE T+ +++E + R ++ E + +
Sbjct: 552 GKPRDVYVLTKGSEDDKNVYRPYD--VVEETVKILREINGKELR-ESLIPYLITEAYRRE 608
Query: 410 KTKVMSGVDRSRERKLRV 427
+ K++ V +E +R+
Sbjct: 609 ENKIVDKVLEHKEYAMRL 626
>pir||F71239 hypothetical protein PH0176 - Pyrococcus horikoshii
>gi|3256562|dbj|BAA29245.1| (AP000001) 690aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 690
Score = 90.9 bits (222), Expect = 3e-17
Identities = 114/431 (26%), Positives = 187/431 (42%), Gaps = 61/431 (14%)
Query: 3 VYDVVVKRLSEIKGFKPEKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLALHS 62
V D V+ LS KG+KP + ++ FL+ PTG GKT SL S
Sbjct: 194 VRDRVIGYLSS-KGWKPR------DYQGFIMGKGSGYFLL---PTGDGKTETSLLAIADS 243
Query: 63 LKDSSLFDRVIHVLPMRSIIEDIDRTAKEAFGFSRTKMMGSSEEFLHLFP---LNITTVD 119
K VI+ LP + +E + + +E FG G F L+ L+ ++
Sbjct: 244 PK-------VIYTLPTITTVEAMRKRFEEMFGKDNVSF-GHGMLFYSLYKEGKLSERLIN 295
Query: 120 TFTWDILKLNTKKITQVERGREFGYDYLTQASILTSLVIFDEAHFILEEPRMKTAFLAVL 179
+ + ++T + F + L + S+ S +I DE H P + L L
Sbjct: 296 RYAMKGIHVSTIDQVLLAFINYFKFP-LRELSLRGSHLIVDEIHSYT--PYTLSLILEGL 352
Query: 180 RFLMEN-NVPIIIMTATLSRGYFELFKKYAQNNGYYFEPEPLVPDENDPFIKR--ESKKN 236
R+ + +++ +AT+ L ++ + G + L+P E +KR ESK+
Sbjct: 353 RYAVNYLGSKVVVTSATMP----SLLREKLEEVGL----KELIPFEK---VKRRYESKRR 401
Query: 237 FEIQFKTGNPLDFIDSAKRNA----IIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHG 292
+ F+ + IDS R +I N+V RA EI+++ K+ +++ L H
Sbjct: 402 VRVWFRDLPMFEDIDSIIREKGKVLVITNTVTRAREIYEELKK-------RRDDVYLFHS 454
Query: 293 RMKPSHKARLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVA 352
R K EK+R S +++ TQ VE +D D + T+ API+SLIQRFGRV
Sbjct: 455 RFTVRDKE---EKMRLVNEISSGILVATQVVEVSLDIDYDTLYTEVAPIDSLIQRFGRVN 511
Query: 353 R--YDEKNAEIIIIEDAPVH-PYDGKKVERTIALMKESSTLNPRI------PQTYQGIVD 403
R E A + +E + PY + VE +++++KE + Y+ I D
Sbjct: 512 RRGMKEGRAYVYAVEGKRFYLPYSKRSVEASLSMVKELEEAKNELDFLRLNDSFYEEIWD 571
Query: 404 EIHGKTKTKVM 414
E + K K +
Sbjct: 572 EYESELKKKYL 582
>pir||C69011 conserved hypothetical protein MTH1086 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622186|gb|AAB85575.1| (AE000879) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 830
Score = 89.3 bits (218), Expect = 9e-17
Identities = 99/378 (26%), Positives = 171/378 (45%), Gaps = 55/378 (14%)
Query: 41 LVIQAPTGYGKTTLSLSLALHSLKDSSLFDRVIHVLPMRSIIEDIDRTAKEAFGF---SR 97
+V+ APTG GKT S+ L + K F I+ LP+R + DI +++ G+
Sbjct: 295 MVLVAPTGSGKTEFSI---LWAAKHGRKF---IYTLPLRVALNDIFMRLRDSDGYFSEDE 348
Query: 98 TKMMGSSEEFLHLFPLNI---TTVDTFTWDI------LKLNTKKITQVERGREFGYDYLT 148
++ S+ +L + T +D+ L T + FG D +
Sbjct: 349 IDILHSTAFIEYLKEERLGRGTDLDSMMTSARLMASPALLTTPDQVLITSLNYFGSDKVI 408
Query: 149 QASILTSLVIFDEAHFILEEPRMKTAFLAVLRFLMENNVPIIIMTATLSRGYFELFKKYA 208
S+++ DE EE M + L + E + I++MTATL F+ +
Sbjct: 409 SVYPFASMIL-DEIQTYNEE--MAAVIIKTLELVNEVDGNILVMTATLP----PYFRSFL 461
Query: 209 QNNGYYFEPEPLVPDEND----------PFIKRESKKNFEIQF--KTGNPLDFIDSAKRN 256
+ +P +D P + E N E++ K G LD +S K
Sbjct: 462 DAMNFEVMDVAAIPGAHDIKNLNLKRHVPQLIEEPLFNDELEVSDKLGKILDE-NSEKNV 520
Query: 257 AIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRMKPSHKARLIEKLREWKNKESFL 316
I+VN+V++A+E++ + ++D ++ L+H R+ K++ I ++++ E L
Sbjct: 521 LIVVNNVQKAIELYREYQDDP--------DVYLLHSRLLEKVKSQRIGEVKKRSQDERGL 572
Query: 317 -IIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVAR-----YDEKNAEIIIIEDAPVH 370
+I TQ +EA VD D+MIT+ + I+S IQR+GR+ R YD + III D+
Sbjct: 573 TVISTQIIEASVDIDFDLMITEISTIDSQIQRWGRIHRNRDADYDSGDPNIIIFTDSDRR 632
Query: 371 P---YDGKKVERTIALMK 385
YD K ++ T A+++
Sbjct: 633 TSLIYDKKVLDATRAILE 650
>pir||D72210 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982379|gb|AAD36862.1|AE001817_9 (AE001817)
conserved hypothetical protein [Thermotoga maritima]
Length = 730
Score = 86.6 bits (211), Expect = 6e-16
Identities = 95/367 (25%), Positives = 152/367 (40%), Gaps = 70/367 (19%)
Query: 13 EIKGFKPEKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLALHSLKDSSLFDRV 72
EI FKPE+ + I APTG GKT +L A H + ++ V
Sbjct: 243 EILSFKPERGKIYS----------------ITAPTGIGKTIANLLFASHLADEDTI---V 283
Query: 73 IHVLPMRSIIEDIDRTAKEAFGFSRTKMMGSSEEFLHLFPLNITTVDTFTWDILKLNTKK 132
I+ LP +IIE KE F T+ F HL D + ++ L +
Sbjct: 284 IYALPFINIIEQTVDKIKEIF---ETESPFFVLPFHHLANPAYEEPDKYEDLLMNLWHSR 340
Query: 133 ITQVERGREFGYDYLTQASILTSLVIFDEAHFILEEPRMK--------------TAFLAV 178
+ T S+L SL+ F + F + P+ T
Sbjct: 341 VVVT-----------TFVSLLESLITFRKIPFFYKFPKAVLILDEVQAIPHEYWTPVEKT 389
Query: 179 LRFLMENNVPIIIMTATLSRGYFELFKKYAQNNGYYFEPEPLVPDENDPFIKRESKKNFE 238
+ FL + +++ TAT E + + N Y+ N +K E + +FE
Sbjct: 390 VEFLSKMGTTVLLSTATKPALLKEALEVVSNKNVYFTAL-------NRTVLKVEKEMSFE 442
Query: 239 IQFKTGNPLDFIDSAKRNAIIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLIHGRMKPSH 298
++K + + KR II N+++ A EI+D E K F + R+ P H
Sbjct: 443 -EYKEF-VRETLKDGKRTLIITNTIREAEEIYDVV-EGMGKTCF-------LSSRVIPKH 492
Query: 299 KARLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFGRVARYDE-K 357
+ ++ K+ E+ L + TQ VEAGVD S + +I D AP++S++Q GR R+ E +
Sbjct: 493 RLEIVSKINEYD-----LCVSTQVVEAGVDISFERVIRDIAPVDSIVQAAGRCNRHFELE 547
Query: 358 NAEIIII 364
E+I++
Sbjct: 548 KGEVIVV 554
>pir||H64346 hypothetical protein homolog MJ0376 - Methanococcus jannaschii
Length = 728
Score = 84.7 bits (206), Expect = 2e-15
Identities = 94/412 (22%), Positives = 181/412 (43%), Gaps = 73/412 (17%)
Query: 14 IKGFKPEKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLALHSLKD-------- 65
+K ++P K K L ++++ F+++ AP G GKT +L AL++LK+
Sbjct: 202 LKDYEPYK-------FQKELYNSKNKFVMLFAPCGRGKTEGALLWALNALKNFKRNKIIL 254
Query: 66 --------SSLFDRVIHVLPMRSIIEDIDRTAKEAFGFSRTKMMGSSEEFLHLF------ 111
++++DR++ + E++ ++F R E+ L
Sbjct: 255 AMPTQVTSNAMYDRLVKIFGE----ENVGLFHGKSFIKLRDSKEIEDEDDLEEIRDENFK 310
Query: 112 ------PLNITTVDTFTWDILKLNTKKITQVERGREFGYDYLTQASILTSLVIFDEAHFI 165
P+ ITT+D + + F +I S++IFDE H+
Sbjct: 311 GNVFFKPITITTIDHVIYSFV-------------HGFSQADFALGNIQNSVIIFDEVHYY 357
Query: 166 LEEPRMKTAFLAVLRFLMENNVPIIIMTATLSR---GYFELFKKYAQNNGYYFEPEPLVP 222
E L + L ++P ++M+ TL E ++ G ++P L
Sbjct: 358 --EKYTLEHLLTLFDILRRMDIPHLLMSGTLPNFLMNNLEGYELVVDEEGLNYKPFKLKC 415
Query: 223 DENDPFIKRESKKNFEIQFKTGNPLDFIDSAKRN---AIIVNSVKRAVEIFDQAKEDAPK 279
EN K + + +++ N + I++ K+ AII+N+V+RA E + ++ P
Sbjct: 416 SENHLIWKEDDE--WKVNENIIN--EIIENYKKGLSQAIILNTVERAREFYKAVRDKVPA 471
Query: 280 LGFEEEEIMLIHGRMKPSHKARLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAA 339
+ + + R+K + +E++R+ +NK ++I+ TQ +E +D SVDVM ++ +
Sbjct: 472 ILYHSQ--FAYKDRVKKEDEIFTLEEMRKSQNKP-YVIVATQVIEISLDMSVDVMYSELS 528
Query: 340 PINSLIQRFGRVARYDE------KNAEIIIIEDAPVHPYDGKKVERTIALMK 385
P ++L QR GR+ R + K ++ I PY + +E+TI +K
Sbjct: 529 PPDALGQRAGRLHRKGKDWRENGKEYKLKIFLPYKHLPYSKELIEKTINHIK 580
>sp|Q57821|Y376_METJA HYPOTHETICAL PROTEIN MJ0376 >gi|2826277|gb|AAB98365.1| (U67490)
conserved hypothetical protein [Methanococcus
jannaschii]
Length = 728
Score = 84.7 bits (206), Expect = 2e-15
Identities = 94/412 (22%), Positives = 181/412 (43%), Gaps = 73/412 (17%)
Query: 14 IKGFKPEKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLALHSLKD-------- 65
+K ++P K K L ++++ F+++ AP G GKT +L AL++LK+
Sbjct: 202 LKDYEPYK-------FQKELYNSKNKFVMLFAPCGRGKTEGALLWALNALKNFKRNKIIL 254
Query: 66 --------SSLFDRVIHVLPMRSIIEDIDRTAKEAFGFSRTKMMGSSEEFLHLF------ 111
++++DR++ + E++ ++F R E+ L
Sbjct: 255 AMPTQVTSNAMYDRLVKIFGE----ENVGLFHGKSFIKLRDSKEIEDEDDLEEIRDENFK 310
Query: 112 ------PLNITTVDTFTWDILKLNTKKITQVERGREFGYDYLTQASILTSLVIFDEAHFI 165
P+ ITT+D + + F +I S++IFDE H+
Sbjct: 311 GNVFFKPITITTIDHVIYSFV-------------HGFSQADFALGNIQNSVIIFDEVHYY 357
Query: 166 LEEPRMKTAFLAVLRFLMENNVPIIIMTATLSR---GYFELFKKYAQNNGYYFEPEPLVP 222
E L + L ++P ++M+ TL E ++ G ++P L
Sbjct: 358 --EKYTLEHLLTLFDILRRMDIPHLLMSGTLPNFLMNNLEGYELVVDEEGLNYKPFKLKC 415
Query: 223 DENDPFIKRESKKNFEIQFKTGNPLDFIDSAKRN---AIIVNSVKRAVEIFDQAKEDAPK 279
EN K + + +++ N + I++ K+ AII+N+V+RA E + ++ P
Sbjct: 416 SENHLIWKEDDE--WKVNENIIN--EIIENYKKGLSQAIILNTVERAREFYKAVRDKVPA 471
Query: 280 LGFEEEEIMLIHGRMKPSHKARLIEKLREWKNKESFLIIGTQAVEAGVDFSVDVMITDAA 339
+ + + R+K + +E++R+ +NK ++I+ TQ +E +D SVDVM ++ +
Sbjct: 472 ILYHSQ--FAYKDRVKKEDEIFTLEEMRKSQNKP-YVIVATQVIEISLDMSVDVMYSELS 528
Query: 340 PINSLIQRFGRVARYDE------KNAEIIIIEDAPVHPYDGKKVERTIALMK 385
P ++L QR GR+ R + K ++ I PY + +E+TI +K
Sbjct: 529 PPDALGQRAGRLHRKGKDWRENGKEYKLKIFLPYKHLPYSKELIEKTINHIK 580
>pir||B70333 hypothetical protein aq_371 - Aquifex aeolicus
>gi|2983042|gb|AAC06651.1| (AE000686) putative protein
[Aquifex aeolicus]
Length = 729
Score = 69.9 bits (168), Expect = 7e-11
Identities = 90/371 (24%), Positives = 150/371 (40%), Gaps = 68/371 (18%)
Query: 14 IKGFKPEKRPVLEEALDKVLSSTRSPFLVIQAPTGYGKTTLSLSLALHSLKDSSLFDRVI 73
+K + +K L E + VL + R LV+ APTGYGKT LKD F
Sbjct: 214 VKDYLRKKGAQLNELQNYVLEN-REECLVVVAPTGYGKTEAGFIF----LKDKGFF---- 264
Query: 74 HVLPMRSIIEDIDRTAKEAFGFSRTKMMGSSEEFLHLFPLNITTVDTFTWDILKLNTKKI 133
LP R I A+ FG + + SS + L +DT T++ + N
Sbjct: 265 -TLPFRVSANGIYERARAVFGENVGLLHSSS--LIELMKKEEDELDTNTFEGIWKN---- 317
Query: 134 TQVERGREFGYD------------------YLTQASILT-SLVIFDEAHFILEEPRMKTA 174
+ + F Y Y ++L+ S ++ DE + P
Sbjct: 318 --YQHSKSFAYPLTVCTPDQIMPFVFKFSGYEKYLALLSYSRIVIDELQ--VYAPYTMAF 373
Query: 175 FLAVLRFLMENNVPIIIMTATLSRGYFELFKKYAQNNGYYFEPEPLVPDENDPFIK-RES 233
+ L + + ++MTAT F+K +P + P +K R +
Sbjct: 374 IVKALEVIKDFGSKFMVMTATFPEFLRRFFEKME------------IPFKEFPELKPRHN 421
Query: 234 KKNFEIQFKTGNPLDFIDSAKRNA---IIVNSVKRAVEIFDQAKEDAPKLGFEEEEIMLI 290
K E + + ++ I S +IVN+V++A E+ +AP ++
Sbjct: 422 VKLLEDTLGSESSINLIRSLSEEGKVLVIVNTVRKAQEL--SLLLNAP----------VL 469
Query: 291 HGRMKPSHKARLIEKLREW-KNKESFLIIGTQAVEAGVDFSVDVMITDAAPINSLIQRFG 349
H R H+A+ E+++E+ + E + + TQ E +D D ++T+ + I+SLIQR G
Sbjct: 470 HSRFLQKHRAKKEEEIKEFFSSGEKGVWVTTQLAEVSLDLDADFLVTELSTIDSLIQRMG 529
Query: 350 RVARYDEKNAE 360
R R K+ E
Sbjct: 530 RCNRKGIKDIE 540
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.137 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182341971
Number of Sequences: 2977
Number of extensions: 7553984
Number of successful extensions: 22346
Number of sequences better than 1.0e-10: 16
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 22301
Number of HSP's gapped (non-prelim): 19
length of query: 529
length of database: 189,106,746
effective HSP length: 60
effective length of query: 469
effective length of database: 153,197,526
effective search space: 71849639694
effective search space used: 71849639694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)