BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1690 (PAB1690) DE:Hypothetical protein
         (222 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75078 hypothetical protein PAB1690 - Pyrococcus abyssi (st...   458  e-128
pir||F71081 hypothetical protein PH0916 - Pyrococcus horikoshii ...   229  2e-59

>pir||G75078 hypothetical protein PAB1690 - Pyrococcus abyssi (strain Orsay)
           >gi|5458444|emb|CAB49932.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 222
           
 Score =  458 bits (1166), Expect = e-128
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MTCCAYFKDGRCVESMEDHIREGLKFIERMYISRNYGEFLSRVLNLRKEKAEGLLRKAYI 60
           MTCCAYFKDGRCVESMEDHIREGLKFIERMYISRNYGEFLSRVLNLRKEKAEGLLRKAYI
Sbjct: 1   MTCCAYFKDGRCVESMEDHIREGLKFIERMYISRNYGEFLSRVLNLRKEKAEGLLRKAYI 60

Query: 61  IHDVGKGLEEFQSKKQHFPYHEFYSALVAKEVLKDFGKAGEIAVVAVSLHHHDWVRYEKP 120
           IHDVGKGLEEFQSKKQHFPYHEFYSALVAKEVLKDFGKAGEIAVVAVSLHHHDWVRYEKP
Sbjct: 61  IHDVGKGLEEFQSKKQHFPYHEFYSALVAKEVLKDFGKAGEIAVVAVSLHHHDWVRYEKP 120

Query: 121 RKPDNLELDRECACVIEKFMGVEIPRKVPWIKPEEFSRWVVNVFSSNIRAVYALLLPISL 180
           RKPDNLELDRECACVIEKFMGVEIPRKVPWIKPEEFSRWVVNVFSSNIRAVYALLLPISL
Sbjct: 121 RKPDNLELDRECACVIEKFMGVEIPRKVPWIKPEEFSRWVVNVFSSNIRAVYALLLPISL 180

Query: 181 ADNYSAMRNRGGEPTTPGKEIEEVLSVYKEVEKFVSSISSGI 222
           ADNYSAMRNRGGEPTTPGKEIEEVLSVYKEVEKFVSSISSGI
Sbjct: 181 ADNYSAMRNRGGEPTTPGKEIEEVLSVYKEVEKFVSSISSGI 222


>pir||F71081 hypothetical protein PH0916 - Pyrococcus horikoshii
           >gi|3257329|dbj|BAA30012.1| (AP000004) 220aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 220
           
 Score =  229 bits (579), Expect = 2e-59
 Identities = 109/220 (49%), Positives = 154/220 (69%), Gaps = 2/220 (0%)

Query: 1   MTCCAYFKDGRCVESMEDHIREGLKFIERMYISRNYGEFLSRVLNLRKEKAEGLLRKAYI 60
           M+ C +F++  CVE+MEDHIR+GL+ IE +Y+ R YG FLS++LN+  + AE LL+KAYI
Sbjct: 1   MSVCTFFENKVCVETMEDHIRKGLEIIEGLYLRRGYGHFLSKILNIDVKLAEELLKKAYI 60

Query: 61  IHDVGKGLEEFQSKKQHFPYHEFYSALVAKEVLKDFGKAGEIAVVAVSLHHHDWVRYEKP 120
            HD+GK LEEFQ +++ F +HE YSALVA+EV K +G  G +  VA+ LHHH+W+R + P
Sbjct: 61  FHDIGKCLEEFQQRREKFRFHEVYSALVAREVFKKYGDIGGVVSVAILLHHHNWIREKSP 120

Query: 121 RKPDNLELDRECACVIEKFMGVEIPRKVPWIKPEEFSRWVVNVFSSNIRAVYALLLPISL 180
           ++P NL+L  EC  +I+K  G +IP ++PW    EF+     +  +N+R VY++LLP+ +
Sbjct: 121 KRPRNLKLCNECLSIIKKLSGEKIPEEIPWRNWIEFTEEAEEIMRTNLRGVYSILLPLVV 180

Query: 181 ADNYSAMRNRGGEPTTPGKEIEEVLSVYKEVEKFVSSISS 220
           ADNY+A  NRGG+ +  GKEI EVL V     K  SS SS
Sbjct: 181 ADNYAAAVNRGGKKSALGKEIFEVLKV--RGWKVASSFSS 218


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.138    0.413 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85791496
Number of Sequences: 2977
Number of extensions: 3486981
Number of successful extensions: 7992
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7990
Number of HSP's gapped (non-prelim): 2
length of query: 222
length of database: 189,106,746
effective HSP length: 53
effective length of query: 169
effective length of database: 157,386,935
effective search space: 26598392015
effective search space used: 26598392015
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)