BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1691 (PAB1691) DE:Hypothetical protein
         (229 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75078 hypothetical protein PAB1691 - Pyrococcus abyssi (st...   449  e-125
pir||E71081 hypothetical protein PH0915 - Pyrococcus horikoshii ...   210  2e-53
gi|11499453 A. fulgidus predicted coding region AF1869 [Archaeog...    71  1e-11

>pir||F75078 hypothetical protein PAB1691 - Pyrococcus abyssi (strain Orsay)
           >gi|5458443|emb|CAB49931.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 229
           
 Score =  449 bits (1142), Expect = e-125
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MLAVFPVGFDEKFIIRALMRNQTKEGDRLLAVVPNDYKKEERTVNALRAIKDIAIPLIGE 60
           MLAVFPVGFDEKFIIRALMRNQTKEGDRLLAVVPNDYKKEERTVNALRAIKDIAIPLIGE
Sbjct: 1   MLAVFPVGFDEKFIIRALMRNQTKEGDRLLAVVPNDYKKEERTVNALRAIKDIAIPLIGE 60

Query: 61  GNFKIIELPTTSGEEMVLKLKSAIENNITEDRRVITILSGGMRPLNVIILLTVITIENVR 120
           GNFKIIELPTTSGEEMVLKLKSAIENNITEDRRVITILSGGMRPLNVIILLTVITIENVR
Sbjct: 61  GNFKIIELPTTSGEEMVLKLKSAIENNITEDRRVITILSGGMRPLNVIILLTVITIENVR 120

Query: 121 VKVESDFENLSGFISLELGPFLAPKNVRWINILCRLKAGKSVRRIAEELGVSPATISREL 180
           VKVESDFENLSGFISLELGPFLAPKNVRWINILCRLKAGKSVRRIAEELGVSPATISREL
Sbjct: 121 VKVESDFENLSGFISLELGPFLAPKNVRWINILCRLKAGKSVRRIAEELGVSPATISREL 180

Query: 181 KNLLKYSLVEEISGKNRPLGYVVTKAGTFYLRLHGGCIEDLEEELGDGE 229
           KNLLKYSLVEEISGKNRPLGYVVTKAGTFYLRLHGGCIEDLEEELGDGE
Sbjct: 181 KNLLKYSLVEEISGKNRPLGYVVTKAGTFYLRLHGGCIEDLEEELGDGE 229


>pir||E71081 hypothetical protein PH0915 - Pyrococcus horikoshii
           >gi|3257328|dbj|BAA30011.1| (AP000004) 192aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 192
           
 Score =  210 bits (528), Expect = 2e-53
 Identities = 106/182 (58%), Positives = 138/182 (75%), Gaps = 1/182 (0%)

Query: 32  VVPNDYKKEERTVNALRAIKDIAIPLIGEGNFKIIELPTTSGEEMVLKLKSAIENNITED 91
           +VP DY++E+RT+NA+ +IK+IA P+IGE N  I+E+P  +GEEMV ++  AI  NIT+D
Sbjct: 2   IVPEDYQREQRTLNAIDSIKNIASPIIGEKNIIILEVPL-NGEEMVTRISHAITENITDD 60

Query: 92  RRVITILSGGMRPLNVIILLTVITIENVRVKVESDFENLSGFISLELGPFLAPKNVRWIN 151
           R ++ +LSGGMRP  V  LL ++TI +VRV +ESDFENLSG+ISLELG FLAP   RW  
Sbjct: 61  RLILAVLSGGMRPFIVSTLLALLTIRDVRVIIESDFENLSGYISLELGTFLAPSKRRWAK 120

Query: 152 ILCRLKAGKSVRRIAEELGVSPATISRELKNLLKYSLVEEISGKNRPLGYVVTKAGTFYL 211
           I+C L  GKSVRRI+EELG+SPATIS ELK ++KY+LV+      R   Y+VTKAG  Y+
Sbjct: 121 IICGLLEGKSVRRISEELGLSPATISYELKEMVKYNLVKPEKPNERTPKYLVTKAGKIYM 180

Query: 212 RL 213
           RL
Sbjct: 181 RL 182


>gi|11499453 A. fulgidus predicted coding region AF1869 [Archaeoglobus fulgidus]
           >gi|7483729|pir||D69483 hypothetical protein AF1869 -
           Archaeoglobus fulgidus >gi|2648681|gb|AAB89388.1|
           (AE000974) A. fulgidus predicted coding region AF1869
           [Archaeoglobus fulgidus]
           Length = 213
           
 Score = 71.0 bits (171), Expect = 1e-11
 Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 11/198 (5%)

Query: 7   VGFDEKFIIRALMRNQTKEGDRLLAVVPNDYKKEERTVNALRAIKDIAIPLIGEG-NFKI 65
           +GFDEKF  RA++R+  KEGDR++ +     +  ER   A   I+ +     G+    ++
Sbjct: 9   LGFDEKFCYRAILRHGIKEGDRVILITT---QMVERVAKAYEWIRKLLETSYGDRVEVEV 65

Query: 66  IELPTTSGEEMVLKLKSAIENNITEDRRVITILSGGMRPLNVIILLTVITIENVRVKVES 125
           +++   S E+ + ++   I+     D  V+ I SGGMR L VI+LL  +      +KVE 
Sbjct: 66  LQVELKSVEKAIREVADKIKEVEGYDLVVVNI-SGGMRVLVVIVLLACMLGLPENLKVEI 124

Query: 126 DFENLSGFISLELGPF---LAPKNVRWINILCRLKAG-KSVRRIAEELGVSPATISRELK 181
           + E+ S  + L +G      +P     + +L  +  G + VR +++ LG   +TI R L 
Sbjct: 125 EKEDFSDIVELPVGVLKIVKSPLGDDKVEVLKAVMNGLRDVRGLSKHLGKDESTIRRHLA 184

Query: 182 NLLKYSLVEEISGKNRPL 199
            L K  L+E    K +PL
Sbjct: 185 ALEKMGLIE--VKKRKPL 200


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.141    0.389 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84262653
Number of Sequences: 2977
Number of extensions: 3471516
Number of successful extensions: 8729
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8725
Number of HSP's gapped (non-prelim): 3
length of query: 229
length of database: 189,106,746
effective HSP length: 56
effective length of query: 173
effective length of database: 155,591,474
effective search space: 26917325002
effective search space used: 26917325002
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)