BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1692 (PAB1692) DE:Hypothetical protein
(194 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75078 hypothetical protein PAB1692 - Pyrococcus abyssi (st... 425 e-118
pir||E71066 hypothetical protein PH1227 - Pyrococcus horikoshii ... 340 6e-93
gi|11499955 conserved hypothetical protein [Archaeoglobus fulgid... 104 8e-22
pir||F75120 hypothetical protein PAB0517 - Pyrococcus abyssi (st... 104 8e-22
pir||A71011 hypothetical protein PH1383 - Pyrococcus horikoshii ... 101 9e-21
pir||F69023 conserved hypothetical protein MTH1175 - Methanobact... 88 9e-17
pir||H71076 hypothetical protein PH0880 - Pyrococcus horikoshii ... 81 9e-15
pir||A72272 conserved hypothetical protein - Thermotoga maritima... 75 5e-13
sp|Q58000|Y580_METJA HYPOTHETICAL PROTEIN MJ0580 >gi|2128388|pir... 72 6e-12
>pir||D75078 hypothetical protein PAB1692 - Pyrococcus abyssi (strain Orsay)
>gi|5458441|emb|CAB49929.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 194
Score = 425 bits (1081), Expect = e-118
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDVENGEIKNVRVIQNPASTAAGGAGPMAVQM 60
MRIAVPTNGGGLEDTVAPVFARAPAFAIVDVENGEIKNVRVIQNPASTAAGGAGPMAVQM
Sbjct: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDVENGEIKNVRVIQNPASTAAGGAGPMAVQM 60
Query: 61 LINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISGSAPQPQQYPQAP 120
LINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISGSAPQPQQYPQAP
Sbjct: 61 LINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISGSAPQPQQYPQAP 120
Query: 121 VQVQPAPAVPTVYRPAYPPTYYWAPGWGWGRGWGRGWGRGWGRGGRGWGARLGYCPWTGM 180
VQVQPAPAVPTVYRPAYPPTYYWAPGWGWGRGWGRGWGRGWGRGGRGWGARLGYCPWTGM
Sbjct: 121 VQVQPAPAVPTVYRPAYPPTYYWAPGWGWGRGWGRGWGRGWGRGGRGWGARLGYCPWTGM 180
Query: 181 PSRRTLRWLYGWWW 194
PSRRTLRWLYGWWW
Sbjct: 181 PSRRTLRWLYGWWW 194
>pir||E71066 hypothetical protein PH1227 - Pyrococcus horikoshii
>gi|3257644|dbj|BAA30327.1| (AP000005) 189aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 189
Score = 340 bits (864), Expect = 6e-93
Identities = 170/198 (85%), Positives = 173/198 (86%), Gaps = 14/198 (7%)
Query: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDVENGEIKNVRVIQNPASTAAGGAGPMAVQM 60
MRIAVPTNGGGLEDTVAPVFARAPAFAIVDVENGEIKNVRVIQN ASTAAGGAGPMAVQM
Sbjct: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDVENGEIKNVRVIQNSASTAAGGAGPMAVQM 60
Query: 61 LINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISGSAPQPQQYPQAP 120
LINEGVDTIVAPQVGPNAMGAIQAAGI++YTV PGTKVEDAVKS ISGSAPQ AP
Sbjct: 61 LINEGVDTIVAPQVGPNAMGAIQAAGIRVYTVPPGTKVEDAVKSAISGSAPQTT----AP 116
Query: 121 VQVQ-PAPAVPTVYRPAYPPTYYWAPGWGW----GRGWGRGWGRGWGRGGRGWGARLGYC 175
+QVQ P PAV T PAYPP YYWAP WGW GRGW GRGWGRGGRGWGARLGYC
Sbjct: 117 IQVQAPTPAVYTP-APAYPPRYYWAPRWGWRGGWGRGW----GRGWGRGGRGWGARLGYC 171
Query: 176 PWTGMPSRRTLRWLYGWW 193
PWTGMPSRRTLRWLYGWW
Sbjct: 172 PWTGMPSRRTLRWLYGWW 189
>gi|11499955 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450449|pir||B69547 conserved hypothetical protein
AF2378 - Archaeoglobus fulgidus
>gi|2650717|gb|AAB91286.1| (AE001112) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 144
Score = 104 bits (257), Expect = 8e-22
Identities = 62/168 (36%), Positives = 87/168 (50%), Gaps = 25/168 (14%)
Query: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDVENGEIKNVRVIQNPASTAAGGAGPMAVQM 60
MRIA T GG++D V P F R F IVD + G +KNV V++N A++ + GAG A QM
Sbjct: 1 MRIAATTLKGGIDDIVTPQFGRTATFTIVDYDGG-VKNVEVVENRAASQSSGAGIAAAQM 59
Query: 61 LINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISGSAPQPQQYPQAP 120
L+++ V+ ++ VGP AM ++AAGI+ + VA G +V DAV+ ++ G +
Sbjct: 60 LVDKKVEVLLTGHVGPKAMNVLRAAGIRAF-VAEGLRVRDAVEKLLKGELEE-------- 110
Query: 121 VQVQPAPAVPTVYRPAYPPTYYWAPGWGWGRGWGRGWGRGWGRGGRGW 168
P+ G G G G GRG G G G GG W
Sbjct: 111 ---------------ITAPSSGMGKGMGRGMGGGRGRGMGGGMGGGRW 143
>pir||F75120 hypothetical protein PAB0517 - Pyrococcus abyssi (strain Orsay)
>gi|5458190|emb|CAB49679.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 138
Score = 104 bits (257), Expect = 8e-22
Identities = 63/169 (37%), Positives = 81/169 (47%), Gaps = 32/169 (18%)
Query: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDV-ENGEIKNVRVIQNPASTAAGGAGPMAVQ 59
MR V T GGL+D V F R P F IVDV ENG I NV+V+ NP + GAG A Q
Sbjct: 1 MRFIVATINGGLDDRVNQAFGRTPTFTIVDVDENGNIVNVQVVPNPGYSQPRGAGVTAAQ 60
Query: 60 MLINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISGSAPQPQQYPQA 119
I++G D ++A Q GPN+ G +QAAG+K + P V++A+++ + G Q
Sbjct: 61 FCIDQGADVVIAGQFGPNSYGVLQAAGMKFVSAPPTMTVKEAIEAYLRGELTQ------- 113
Query: 120 PVQVQPAPAVPTVYRPAYPPTYYWAPGWGWGRGWGRGWGRGWGRGGRGW 168
G G GRG G G GR WG GW
Sbjct: 114 --------------------AIMGQGGGGRGRGMGMGRGRRWG----GW 138
>pir||A71011 hypothetical protein PH1383 - Pyrococcus horikoshii
>gi|3257806|dbj|BAA30489.1| (AP000006) 177aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 177
Score = 101 bits (248), Expect = 9e-21
Identities = 64/166 (38%), Positives = 84/166 (50%), Gaps = 31/166 (18%)
Query: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDV-ENGEIKNVRVIQNPASTAAGGAGPMAVQ 59
MR+ V T GGL+D V F R P F IVDV ENG I NV+V++NP + GAG Q
Sbjct: 41 MRLIVATVRGGLDDYVNQSFGRTPTFTIVDVDENGNIVNVQVVENPGYSQPRGAGVTTAQ 100
Query: 60 MLINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISGSAPQPQQYPQA 119
I++G D +++ Q GPN+ G +QAAGI+L + P V +AV++ + G Q
Sbjct: 101 FCIDQGADVVISGQFGPNSSGVLQAAGIRLVSAPPTMTVREAVEAYLRGELTQ------- 153
Query: 120 PVQVQPAPAVPTVYRPAYPPTYYWAPGWGWGRGWGRGWGRGWGRGG 165
+ Q G GRG GRG GR W RGG
Sbjct: 154 AIMGQ----------------------GGMGRGRGRGRGR-WMRGG 176
>pir||F69023 conserved hypothetical protein MTH1175 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622282|gb|AAB85664.1| (AE000886) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 124
Score = 87.8 bits (214), Expect = 9e-17
Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDVENGEIKNVRVIQNPASTAAGGAGPMAVQM 60
M+IA+ ++G L V+ F RAP F IV+++ G I++ VI+NP+++A+GGAG Q+
Sbjct: 1 MKIAIASSGTDLGSEVSRFFGRAPYFMIVEMKKGNIESSEVIENPSASASGGAGIRTAQI 60
Query: 61 LINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISGS 109
+ N GV ++A GPNA + GIK+Y A GT VE+ +K G+
Sbjct: 61 IANNGVKAVIASSPGPNAFEVLNELGIKIYR-ATGTSVEENLKLFTEGN 108
>pir||H71076 hypothetical protein PH0880 - Pyrococcus horikoshii
>gi|3257291|dbj|BAA29974.1| (AP000004) 116aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 116
Score = 81.1 bits (197), Expect = 9e-15
Identities = 37/110 (33%), Positives = 64/110 (57%)
Query: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDVENGEIKNVRVIQNPASTAAGGAGPMAVQM 60
++IA+PT+ GGLED V RA F +V+V++G+I+ + V++NP GAG
Sbjct: 2 IKIAIPTSKGGLEDKVHESLVRAETFTLVEVKDGKIERIEVVENPHKNEPYGAGSKVAIF 61
Query: 61 LINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISGSA 110
L+N GV+ ++ P P ++A G+K+ V G V++ +++ S S+
Sbjct: 62 LVNNGVNILLTPMDCPKGKAILEAGGVKIIKVKQGKSVKEVIEAFQSSSS 111
>pir||A72272 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981848|gb|AAD36364.1|AE001784_6 (AE001784)
conserved hypothetical protein [Thermotoga maritima]
Length = 116
Score = 75.3 bits (182), Expect = 5e-13
Identities = 43/107 (40%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 2 RIAVPTNGGGLEDTVAPVFARAPAFAIVDVENGEIKNVRVIQNPASTAAGGAGPMAVQML 61
R+A+P+ G L V+ FARA F I D E+G NV V++N + A G GP VQ L
Sbjct: 3 RVAIPSVGKDLSSMVSDRFARAEYFIIYDTESG---NVEVVENTIADAHG-TGPKVVQSL 58
Query: 62 INEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISG 108
+++GV+ ++A VG NA ++AAG+K+Y GT V++A+ + G
Sbjct: 59 VSKGVEYLIASNVGRNAFETLKAAGVKVYRFEGGT-VQEAIDAFSEG 104
>sp|Q58000|Y580_METJA HYPOTHETICAL PROTEIN MJ0580 >gi|2128388|pir||D64372 hypothetical
protein MJ0580 - Methanococcus jannaschii
>gi|1591287|gb|AAB98571.1| (U67506) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 118
Score = 71.8 bits (173), Expect = 6e-12
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 1 MRIAVPTNGGGLEDTVAPVFARAPAFAIVDVENGEIKNVRVIQNPASTAAGGAGPMAVQM 60
M+IA+P + L +P F R F IV++ENGEIKN +I+N A G G + +
Sbjct: 10 MKIALPIDNNRL----SPHFGRCEKFMIVEIENGEIKNKEIIENTARNGMHGVGTTSASL 65
Query: 61 LINEGVDTIVAPQVGPNAMGAIQAAGIKLYTVAPGTKVEDAVKSVISG 108
+ N GV+ I+ +GP A + GI +Y A T +++ +K + G
Sbjct: 66 IANMGVNAIIVQNIGPKAYSVFKQLGIDVYK-ANTTSIDECIKLFLEG 112
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.478
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86211867
Number of Sequences: 2977
Number of extensions: 4160315
Number of successful extensions: 34765
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 34723
Number of HSP's gapped (non-prelim): 16
length of query: 194
length of database: 189,106,746
effective HSP length: 45
effective length of query: 149
effective length of database: 162,174,831
effective search space: 24164049819
effective search space used: 24164049819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)