BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1693 (PAB1693) DE:Hypothetical protein
         (491 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75078 hypothetical protein PAB1693 - Pyrococcus abyssi (st...   999  0.0

>pir||C75078 hypothetical protein PAB1693 - Pyrococcus abyssi (strain Orsay)
           >gi|5458440|emb|CAB49928.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 491
           
 Score =  999 bits (2555), Expect = 0.0
 Identities = 491/491 (100%), Positives = 491/491 (100%)

Query: 1   MGGESYNDIVKMKVVRLLQFYGFTATHEAPVRIPEGGWGRVDVAGRKGNITVGVEVVWSG 60
           MGGESYNDIVKMKVVRLLQFYGFTATHEAPVRIPEGGWGRVDVAGRKGNITVGVEVVWSG
Sbjct: 1   MGGESYNDIVKMKVVRLLQFYGFTATHEAPVRIPEGGWGRVDVAGRKGNITVGVEVVWSG 60

Query: 61  DVARDAKKLAMNNFDYRYIIALQYPKQVDEIIVDGKRIKVVDSIRSFEHELRRDLGIPLD 120
           DVARDAKKLAMNNFDYRYIIALQYPKQVDEIIVDGKRIKVVDSIRSFEHELRRDLGIPLD
Sbjct: 61  DVARDAKKLAMNNFDYRYIIALQYPKQVDEIIVDGKRIKVVDSIRSFEHELRRDLGIPLD 120

Query: 121 HPYFSQLEKPPEVFIESKEEEINKLIEELEEYGLENFIEEVLDAIRRVYISRKLAVEIRV 180
           HPYFSQLEKPPEVFIESKEEEINKLIEELEEYGLENFIEEVLDAIRRVYISRKLAVEIRV
Sbjct: 121 HPYFSQLEKPPEVFIESKEEEINKLIEELEEYGLENFIEEVLDAIRRVYISRKLAVEIRV 180

Query: 181 HYNPMTGPTSPNEYESVNIKPQILSILHKLNFINTSREGRGEGRKTFAYPTERGSRVGHE 240
           HYNPMTGPTSPNEYESVNIKPQILSILHKLNFINTSREGRGEGRKTFAYPTERGSRVGHE
Sbjct: 181 HYNPMTGPTSPNEYESVNIKPQILSILHKLNFINTSREGRGEGRKTFAYPTERGSRVGHE 240

Query: 241 LILKRIKEHERDIERIIKEYGNKLWIILYGSLWYTPNYYSLEIILRDRFYVPRGVILSKE 300
           LILKRIKEHERDIERIIKEYGNKLWIILYGSLWYTPNYYSLEIILRDRFYVPRGVILSKE
Sbjct: 241 LILKRIKEHERDIERIIKEYGNKLWIILYGSLWYTPNYYSLEIILRDRFYVPRGVILSKE 300

Query: 301 EDPIIKAAKHAKILGRYSDLDLNYLDLPEPPLIWMFSNFLVNTMLKDDAIRLFRELESYD 360
           EDPIIKAAKHAKILGRYSDLDLNYLDLPEPPLIWMFSNFLVNTMLKDDAIRLFRELESYD
Sbjct: 301 EDPIIKAAKHAKILGRYSDLDLNYLDLPEPPLIWMFSNFLVNTMLKDDAIRLFRELESYD 360

Query: 361 LAIQDTEWDASGFPMYDVIKAPFEVFQYFIQRIQRPGNLRYYAQKFGVFYVLLKVGEIYH 420
           LAIQDTEWDASGFPMYDVIKAPFEVFQYFIQRIQRPGNLRYYAQKFGVFYVLLKVGEIYH
Sbjct: 361 LAIQDTEWDASGFPMYDVIKAPFEVFQYFIQRIQRPGNLRYYAQKFGVFYVLLKVGEIYH 420

Query: 421 PPTARKTYENLLRALELNDSMIAEVLADMNKRGITSRLITDPEKSPFIILDEKGFEEYIK 480
           PPTARKTYENLLRALELNDSMIAEVLADMNKRGITSRLITDPEKSPFIILDEKGFEEYIK
Sbjct: 421 PPTARKTYENLLRALELNDSMIAEVLADMNKRGITSRLITDPEKSPFIILDEKGFEEYIK 480

Query: 481 YSLVTIAEHFK 491
           YSLVTIAEHFK
Sbjct: 481 YSLVTIAEHFK 491


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.142    0.416 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192724820
Number of Sequences: 2977
Number of extensions: 8438547
Number of successful extensions: 23131
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23130
Number of HSP's gapped (non-prelim): 1
length of query: 491
length of database: 189,106,746
effective HSP length: 55
effective length of query: 436
effective length of database: 156,189,961
effective search space: 68098822996
effective search space used: 68098822996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)