BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1695 (PAB1695) DE:Hypothetical protein
         (239 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75078 hypothetical protein PAB1695 - Pyrococcus abyssi (st...   481  e-135
pir||G71066 hypothetical protein PH1229 - Pyrococcus horikoshii ...   390  e-107
pir||F72660 hypothetical protein APE0710 - Aeropyrum pernix (str...    86  4e-16

>pir||A75078 hypothetical protein PAB1695 - Pyrococcus abyssi (strain Orsay)
           >gi|5458438|emb|CAB49926.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 239
           
 Score =  481 bits (1226), Expect = e-135
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MIARIIGEIGIEGARFIEENIDEQFKALRYLSKGIDSETFVKLVIANSLVSYQLTGKGEQ 60
           MIARIIGEIGIEGARFIEENIDEQFKALRYLSKGIDSETFVKLVIANSLVSYQLTGKGEQ
Sbjct: 1   MIARIIGEIGIEGARFIEENIDEQFKALRYLSKGIDSETFVKLVIANSLVSYQLTGKGEQ 60

Query: 61  WWWEFAKYFYGRDVKSIYLAYKEFLPNSRFNRRLIPQKLSRIRRVETFLSTLTEERIEEY 120
           WWWEFAKYFYGRDVKSIYLAYKEFLPNSRFNRRLIPQKLSRIRRVETFLSTLTEERIEEY
Sbjct: 61  WWWEFAKYFYGRDVKSIYLAYKEFLPNSRFNRRLIPQKLSRIRRVETFLSTLTEERIEEY 120

Query: 121 YGDMSSLWGSIARALGVDKESKTVVFSVKMFGYAARIVLSTFNPYPMEIPIPEDSRIVKL 180
           YGDMSSLWGSIARALGVDKESKTVVFSVKMFGYAARIVLSTFNPYPMEIPIPEDSRIVKL
Sbjct: 121 YGDMSSLWGSIARALGVDKESKTVVFSVKMFGYAARIVLSTFNPYPMEIPIPEDSRIVKL 180

Query: 181 TKKLTNEKPRKFWMKIARESGVPPLHIDSILWPLLGGASIDSAPPELRDKLAELIKIIR 239
           TKKLTNEKPRKFWMKIARESGVPPLHIDSILWPLLGGASIDSAPPELRDKLAELIKIIR
Sbjct: 181 TKKLTNEKPRKFWMKIARESGVPPLHIDSILWPLLGGASIDSAPPELRDKLAELIKIIR 239


>pir||G71066 hypothetical protein PH1229 - Pyrococcus horikoshii
           >gi|3257646|dbj|BAA30329.1| (AP000005) 239aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 239
           
 Score =  390 bits (990), Expect = e-107
 Identities = 186/239 (77%), Positives = 213/239 (88%)

Query: 1   MIARIIGEIGIEGARFIEENIDEQFKALRYLSKGIDSETFVKLVIANSLVSYQLTGKGEQ 60
           MIA +I EIGIEGARFIEENIDEQFKAL YLS+G+D   FV+LVIAN+LVSYQLTGKGE 
Sbjct: 1   MIAELIREIGIEGARFIEENIDEQFKALSYLSEGMDRVNFVRLVIANALVSYQLTGKGEM 60

Query: 61  WWWEFAKYFYGRDVKSIYLAYKEFLPNSRFNRRLIPQKLSRIRRVETFLSTLTEERIEEY 120
           WWWEFAKYF G++VK+IY AYKEFLPNS+FNRRLI QKL RI+++E FLSTLTEE IE Y
Sbjct: 61  WWWEFAKYFKGKEVKTIYSAYKEFLPNSKFNRRLIQQKLLRIKKIEPFLSTLTEESIERY 120

Query: 121 YGDMSSLWGSIARALGVDKESKTVVFSVKMFGYAARIVLSTFNPYPMEIPIPEDSRIVKL 180
           Y DM+ LW +IA+ L VD+ESKTVVFSVKMFGYAARIVLS FNPYPMEIPIPED RI+KL
Sbjct: 121 YEDMTLLWKAIAKVLKVDRESKTVVFSVKMFGYAARIVLSKFNPYPMEIPIPEDVRIIKL 180

Query: 181 TKKLTNEKPRKFWMKIARESGVPPLHIDSILWPLLGGASIDSAPPELRDKLAELIKIIR 239
           T+KLTNE+PR FWMKIA+ES VPPLHIDSILWPLLGGA ++ APPEL++KL +LI++IR
Sbjct: 181 TRKLTNERPRDFWMKIAKESNVPPLHIDSILWPLLGGARVEEAPPELKEKLEKLIRVIR 239


>pir||F72660 hypothetical protein APE0710 - Aeropyrum pernix (strain K1)
           >gi|5104371|dbj|BAA79686.1| (AP000060) 291aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 291
           
 Score = 85.8 bits (209), Expect = 4e-16
 Identities = 70/254 (27%), Positives = 115/254 (44%), Gaps = 22/254 (8%)

Query: 2   IARIIGEIGIEGARFIEENIDEQFKALRYLSKGIDSETFVKLVIANSLVSYQLTGKGEQW 61
           +A     + I      EE +D Q+K +  L+  I +       +   L SY+L  +GE+W
Sbjct: 16  VAEAFSRLSIGEVLGFEEQVDPQYKLVSRLAGEIGAGKAALSALLVGLASYRLAMRGEEW 75

Query: 62  WWEFAKYFYG-----RDVKSIYLAYKEFLPNSRFNRRLIPQKLSRIRRVETFLSTLTE-- 114
           W  F ++          ++ +  A + FL +          KL R+RR  +    L E  
Sbjct: 76  WLCFYRHMRSSLPRAEGLRGVLRAVEGFLTSCSGAAIGREAKLRRVRRAASAAEVLGEVL 135

Query: 115 ERIEEYYGDMSSLWGSIARALGVDKESKTVVFSVKMFGYAARIVLSTFNPYPMEIPIPED 174
           +         S +  ++  ALG     KT VFSVK+  YA R  L+   P  +++PIP D
Sbjct: 136 DNPLVLVERPSEVLEALRVALGEKGFRKTTVFSVKIAYYAVR-PLAGRKPLTLDVPIPVD 194

Query: 175 SRIV--KLTKKLTN-----------EKPRKFWMKIARESGVPPLHIDSILWPLLGGASID 221
            R+    ++ ++             E  ++ W ++AR SG+P LHIDSILW + G A  +
Sbjct: 195 VRVACASISSEMVEAPSYREVVARPEAAQRAWGRVARSSGIPVLHIDSILW-VTGWAPRE 253

Query: 222 SAPPELRDKLAELI 235
             P E R+ +A ++
Sbjct: 254 LPPGEAREAVAGIL 267


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.139    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87757522
Number of Sequences: 2977
Number of extensions: 3628255
Number of successful extensions: 8589
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8584
Number of HSP's gapped (non-prelim): 3
length of query: 239
length of database: 189,106,746
effective HSP length: 53
effective length of query: 186
effective length of database: 157,386,935
effective search space: 29273969910
effective search space used: 29273969910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)