BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1697 (PAB1697) DE:Hypothetical protein
(483 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75077 hypothetical protein PAB1697 - Pyrococcus abyssi (st... 941 0.0
pir||A71067 hypothetical protein PH1231 - Pyrococcus horikoshii ... 735 0.0
gi|11498740 A. fulgidus predicted coding region AF1140 [Archaeog... 93 6e-18
gi|11498004 A. fulgidus predicted coding region AF0392 [Archaeog... 74 3e-12
emb|CAC11213.1| (AL445063) conserved hypothetical membrane prote... 73 6e-12
>pir||G75077 hypothetical protein PAB1697 - Pyrococcus abyssi (strain Orsay)
>gi|5458436|emb|CAB49924.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 483
Score = 941 bits (2406), Expect = 0.0
Identities = 483/483 (100%), Positives = 483/483 (100%)
Query: 1 MIREVVRITYRELHYRMLRENLNISRNEKKLMDSLKWQGNIKLAVGLQSFAFLMFGFMIG 60
MIREVVRITYRELHYRMLRENLNISRNEKKLMDSLKWQGNIKLAVGLQSFAFLMFGFMIG
Sbjct: 1 MIREVVRITYRELHYRMLRENLNISRNEKKLMDSLKWQGNIKLAVGLQSFAFLMFGFMIG 60
Query: 61 LSIYMAPRELRGVLFAPNLIVPFIYSLYTTSLMVAYLRSGKVLEPLKALPIPKIGFIMSV 120
LSIYMAPRELRGVLFAPNLIVPFIYSLYTTSLMVAYLRSGKVLEPLKALPIPKIGFIMSV
Sbjct: 61 LSIYMAPRELRGVLFAPNLIVPFIYSLYTTSLMVAYLRSGKVLEPLKALPIPKIGFIMSV 120
Query: 121 LILVDVLPGFFLLLPSVLFLGGIVESLLGLGWLLLAILMGHSLALLLQVKFGGSYVGKGS 180
LILVDVLPGFFLLLPSVLFLGGIVESLLGLGWLLLAILMGHSLALLLQVKFGGSYVGKGS
Sbjct: 121 LILVDVLPGFFLLLPSVLFLGGIVESLLGLGWLLLAILMGHSLALLLQVKFGGSYVGKGS 180
Query: 181 LIKNLARAFGVLLMIGIYLLIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSL 240
LIKNLARAFGVLLMIGIYLLIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSL
Sbjct: 181 LIKNLARAFGVLLMIGIYLLIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSL 240
Query: 241 ILLLAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRR 300
ILLLAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRR
Sbjct: 241 ILLLAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRR 300
Query: 301 TQLLGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVL 360
TQLLGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVL
Sbjct: 301 TQLLGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVL 360
Query: 361 RSLPITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNGLSSLYIAPLVLAPLLTSGIGMK 420
RSLPITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNGLSSLYIAPLVLAPLLTSGIGMK
Sbjct: 361 RSLPITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNGLSSLYIAPLVLAPLLTSGIGMK 420
Query: 421 YVGGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLSYIILDSIVIIGSLLI 480
YVGGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLSYIILDSIVIIGSLLI
Sbjct: 421 YVGGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLSYIILDSIVIIGSLLI 480
Query: 481 WRW 483
WRW
Sbjct: 481 WRW 483
>pir||A71067 hypothetical protein PH1231 - Pyrococcus horikoshii
>gi|3257648|dbj|BAA30331.1| (AP000005) 483aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 483
Score = 735 bits (1878), Expect = 0.0
Identities = 347/483 (71%), Positives = 424/483 (86%)
Query: 1 MIREVVRITYRELHYRMLRENLNISRNEKKLMDSLKWQGNIKLAVGLQSFAFLMFGFMIG 60
M+ E++R+TYRELHYRM++EN++ISRNEKKLM+SLKWQGNIKLAVGLQS AF++ GFMIG
Sbjct: 1 MLWEIIRVTYRELHYRMIKENVSISRNEKKLMNSLKWQGNIKLAVGLQSLAFMLLGFMIG 60
Query: 61 LSIYMAPRELRGVLFAPNLIVPFIYSLYTTSLMVAYLRSGKVLEPLKALPIPKIGFIMSV 120
LSIY+APR++RG+LFAPNLIVPFIYS+YTTSLMVAYL+SGKVLEPLK+LPIP++G I+SV
Sbjct: 61 LSIYLAPRDVRGILFAPNLIVPFIYSIYTTSLMVAYLKSGKVLEPLKSLPIPRLGLILSV 120
Query: 121 LILVDVLPGFFLLLPSVLFLGGIVESLLGLGWLLLAILMGHSLALLLQVKFGGSYVGKGS 180
LIL+D LPGFFLLLPS FLGGI E LLG+GWL+LA+LMGHSLAL+ QVKFGGSYVG+GS
Sbjct: 121 LILIDTLPGFFLLLPSTFFLGGIGEDLLGIGWLILAVLMGHSLALVFQVKFGGSYVGRGS 180
Query: 181 LIKNLARAFGVLLMIGIYLLIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSL 240
++KNLA+AFG+LLMI IYLLIQGIV+FVK NVE LTPIF+EY+VVFPM ASTIY P KS
Sbjct: 181 ILKNLAKAFGILLMISIYLLIQGIVKFVKENVEMLTPIFKEYEVVFPMVASTIYNPLKSF 240
Query: 241 ILLLAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRR 300
+ L+ YAIPF MLY+YGIR+LWESLE EKV G V +EYSI+ ++S + KD+K+IFRR
Sbjct: 241 MFLIIYAIPFGMLYIYGIRRLWESLEVEKVEGNVKVEYSIRSMNSLVSLVFKDYKIIFRR 300
Query: 301 TQLLGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVL 360
TQLLGGFLAP+Y+G+WWIY V K GFPLR T +LM+ IG+ ASITLD FK+ELEGFE L
Sbjct: 301 TQLLGGFLAPVYMGLWWIYMVGKEGFPLRSTGMLMITIGILASITLDAVFKMELEGFETL 360
Query: 361 RSLPITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNGLSSLYIAPLVLAPLLTSGIGMK 420
+SLPI+K++FLLTKGL+MST+P+FLNLT+ L+ +NG +LYI PLVL+PLL SGI MK
Sbjct: 361 KSLPISKKRFLLTKGLVMSTIPIFLNLTLLALSLIFNGTKALYIFPLVLSPLLASGISMK 420
Query: 421 YVGGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLSYIILDSIVIIGSLLI 480
YV KI DVEMPNL DGIVIL+LN+IPIV+ IL+FA+ +P+SYI++DS++IIGSL++
Sbjct: 421 YVSKKINDVEMPNLGLSDGIVILILNLIPIVIGGILLFAIKDPISYIVVDSMIIIGSLIL 480
Query: 481 WRW 483
W W
Sbjct: 481 WGW 483
>gi|11498740 A. fulgidus predicted coding region AF1140 [Archaeoglobus fulgidus]
>gi|7483559|pir||C69392 hypothetical protein AF1140 -
Archaeoglobus fulgidus >gi|2649452|gb|AAB90108.1|
(AE001025) A. fulgidus predicted coding region AF1140
[Archaeoglobus fulgidus]
Length = 439
Score = 93.2 bits (228), Expect = 6e-18
Identities = 107/473 (22%), Positives = 208/473 (43%), Gaps = 55/473 (11%)
Query: 10 YRELHYRMLRENLNISRNEKKLMDSLKWQGNIKLAVGLQSFAFLMFGFMIGLSIYMAPRE 69
YRE++Y+ ++ N IS ++++ S++ + ++++ V F G + +++
Sbjct: 3 YREMNYQNMKRNPQISH--ERVVKSMR-KFSLRVQVAKSFFIMTFLGSFLCWVAFISSGL 59
Query: 70 LRGVLFAPNLIVPFIYSLYTTSLMVAYLRSGKVLEPLKALPIP------KIGFIMSVLIL 123
++F +L+ IY +A S +V EPL+ LP+ + FI S+ IL
Sbjct: 60 GLSLIFTLSLVFSQIYPAQN----IAISASSRVFEPLRYLPVRFSERMLVVFFIDSINIL 115
Query: 124 VDVLPGFFLLLPSVLFLGGIVESLLGLGWLLLAILMGHSLALLLQVKFGGSYVGKGSLIK 183
P +L+ L+ G L L W++ AIL+G+S+ L FG
Sbjct: 116 AFATPTIAVLMVKNLYFG-----LYSLLWIIAAILLGYSMVFLYYALFG----------V 160
Query: 184 NLARAFGVLLMIGIYLLIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSLILL 243
+ F ++ GI L ++ F R FQE + P + LL
Sbjct: 161 KVRSGFSKSVLAGI--LFFAVLVFALRR-------FQEIPDLTPYLTPHL--------LL 203
Query: 244 LAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRRTQL 303
L+YA A + L ++W S+ +++ EV + + + + L KDF++I R+ L
Sbjct: 204 LSYAASSATIKL-STGRVWRSILNPEIV-EVKGSSRLSSGSPLRAMLIKDFRLILRKNAL 261
Query: 304 LGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVLRSL 363
+ PL I + + ++A ++ ++ I + T+D+ LE + LR L
Sbjct: 262 FP-LIVPLVIVMPNVVSIANMP---NLSIFIITTISTLS--TIDLRIIGNLENVDFLRML 315
Query: 364 PITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNGLSSLYIAPLVLAPLLTSGIGMKYV- 422
P++KR F+++K L+ + +L +AF + + Y+ P + S + +
Sbjct: 316 PLSKRGFVMSKACLIFVISFAASLPAGSIAFIVS-QNPFYLFMAFAIPAIVSMLSSLIIF 374
Query: 423 GGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLSYIILDSIVII 475
K ++ P + F I +LL+N + F +S+P++ II + ++
Sbjct: 375 WQKGEEIYFPEVGFLKWIGLLLVNFGAVYAVLSPRFILSQPVADIISSVLTLL 427
>gi|11498004 A. fulgidus predicted coding region AF0392 [Archaeoglobus fulgidus]
>gi|7483416|pir||H69298 hypothetical protein AF0392 -
Archaeoglobus fulgidus >gi|2650243|gb|AAB90847.1|
(AE001077) A. fulgidus predicted coding region AF0392
[Archaeoglobus fulgidus]
Length = 484
Score = 74.1 bits (179), Expect = 3e-12
Identities = 92/356 (25%), Positives = 160/356 (44%), Gaps = 45/356 (12%)
Query: 128 PGFFLLLPSVLFLG-----GIVESLLGLGWLLLAILMGH-SLALLLQVKFGGSYVGKGSL 181
P LL ++ +G G++ +LLG LA++MG S+ +LL + G G+ SL
Sbjct: 124 PAVIALLSLLVLVGMRNPAGLLPALLGF----LAVIMGALSIVILLGKRLGSVQTGR-SL 178
Query: 182 IKNLARAFGVLLMI----GIYLLIQ-GIVQFVKRNVETLTPIFQEYDVVFPMSAST-IYY 235
R FG++ + G+YL+ Q I +N E YD +FP+S I
Sbjct: 179 RAAFFRIFGLIAWLVSIYGLYLINQLAIYLMTFKNYEA-------YDSLFPISYGLWISQ 231
Query: 236 PF--KSLILLLAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKD 293
PF K L L Y +L+ Y +R+L + E K G + + IK R + + + KD
Sbjct: 232 PFSAKYAALSLFYFALITLLFFYAVRELSKE-EIAKHYGSLK-GWKIKRRGKMTAMVIKD 289
Query: 294 FKMIFRRTQLLGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVA-IGVFASITLDMSFKI 352
FK +FR QL L P+Y + + F ++++ + V + +F +IT+ +
Sbjct: 290 FKQLFRNPQLFVIALLPIYGALMQLV------FYIKLSEVASVLYLQIFLAITVSSFMSL 343
Query: 353 ELEGFEVLRSLPITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNG---LSSLYIAPLVL 409
E + + +LP+T + +K +L L F+++ I Y G ++SL + P
Sbjct: 344 ERSSY--ITALPLTDLEMKFSK-ILEGLLIYFVSMGIVAAVVIYKGGNLINSLSLFPTGF 400
Query: 410 APLLTSGIGMKYVGGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLS 465
A +L + + + + +VE T ++L +P V + V + P S
Sbjct: 401 AVVLVAVQFSRRLTSEPVNVEAVIATLISFFIVL----VPAAVGGVAVLILKAPFS 452
>emb|CAC11213.1| (AL445063) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 515
Score = 73.4 bits (177), Expect = 6e-12
Identities = 78/355 (21%), Positives = 150/355 (41%), Gaps = 38/355 (10%)
Query: 41 IKLAVGLQSFAFLMFGFMIGLSIYMAPRELRGVLFAPNLIVPFIYSLY----TTSLMVAY 96
+ ++ G SF+F++F ++ M E R + +++ F+YSL+ + L
Sbjct: 18 VNISYGATSFSFIVFSLILVAPSLM---EHRIYTLSSVVLLLFVYSLFINISNSLLFFVS 74
Query: 97 LRSGKVLEPLKALPIPKIGFIMSVL--------ILVDVLPGFFLLLPSVLFLGGIVESLL 148
+ +L+PL+ LP+ +++V L VLP FL + LG ++
Sbjct: 75 VNINHILDPLRILPVDFPDHVIAVSWFIYTGSSSLFAVLPAIFL---AAFLLGDPYILVI 131
Query: 149 GLGWLLLAILMGHSLALLLQVKFGGSYVGKGSLIKNLARAFG-VLLMIGIYL-------- 199
GL W + ++L+G+ + + V FG GK + N+ R G ++ ++ ++
Sbjct: 132 GLIWSIFSVLLGYIIGSSIFVAFGSRISGKRTRSTNILRNVGRIVFLVFVFAIFEIILYN 191
Query: 200 --LIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSLILLLAYAIPFAMLYLYG 257
++ GI+ + PIF VF IY I+ + Y + ++Y
Sbjct: 192 ANIVNGIIPRLPYPYSYFIPIFNIQSTVFFFHG--IYMQATGFIISMVYTALASFAFIYV 249
Query: 258 IRKLWESL--EGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRRTQLLGGFLAPLY--- 312
RK + L + V + + R+ SF SKD K+ R++Q L + PL+
Sbjct: 250 NRKAFYRLLEPTARNQSRVKTQMKAEVRSRPFSFFSKDLKISSRKSQNLVLLIMPLFFVF 309
Query: 313 --IGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVLRSLPI 365
I +Y P+ + ++ + V +S + IE G +++LP+
Sbjct: 310 PTIMSEVLYAPTSKADPIILYNAMVAFVIVTSSFYSILFLVIEGNGISFIKALPL 364
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.148 0.435
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163387508
Number of Sequences: 2977
Number of extensions: 6816501
Number of successful extensions: 24270
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24260
Number of HSP's gapped (non-prelim): 5
length of query: 483
length of database: 189,106,746
effective HSP length: 52
effective length of query: 431
effective length of database: 157,985,422
effective search space: 68091716882
effective search space used: 68091716882
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 167 (69.5 bits)