BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1697 (PAB1697) DE:Hypothetical protein
         (483 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75077 hypothetical protein PAB1697 - Pyrococcus abyssi (st...   941  0.0
pir||A71067 hypothetical protein PH1231 - Pyrococcus horikoshii ...   735  0.0
gi|11498740 A. fulgidus predicted coding region AF1140 [Archaeog...    93  6e-18
gi|11498004 A. fulgidus predicted coding region AF0392 [Archaeog...    74  3e-12
emb|CAC11213.1| (AL445063) conserved hypothetical membrane prote...    73  6e-12

>pir||G75077 hypothetical protein PAB1697 - Pyrococcus abyssi (strain Orsay)
           >gi|5458436|emb|CAB49924.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 483
           
 Score =  941 bits (2406), Expect = 0.0
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MIREVVRITYRELHYRMLRENLNISRNEKKLMDSLKWQGNIKLAVGLQSFAFLMFGFMIG 60
           MIREVVRITYRELHYRMLRENLNISRNEKKLMDSLKWQGNIKLAVGLQSFAFLMFGFMIG
Sbjct: 1   MIREVVRITYRELHYRMLRENLNISRNEKKLMDSLKWQGNIKLAVGLQSFAFLMFGFMIG 60

Query: 61  LSIYMAPRELRGVLFAPNLIVPFIYSLYTTSLMVAYLRSGKVLEPLKALPIPKIGFIMSV 120
           LSIYMAPRELRGVLFAPNLIVPFIYSLYTTSLMVAYLRSGKVLEPLKALPIPKIGFIMSV
Sbjct: 61  LSIYMAPRELRGVLFAPNLIVPFIYSLYTTSLMVAYLRSGKVLEPLKALPIPKIGFIMSV 120

Query: 121 LILVDVLPGFFLLLPSVLFLGGIVESLLGLGWLLLAILMGHSLALLLQVKFGGSYVGKGS 180
           LILVDVLPGFFLLLPSVLFLGGIVESLLGLGWLLLAILMGHSLALLLQVKFGGSYVGKGS
Sbjct: 121 LILVDVLPGFFLLLPSVLFLGGIVESLLGLGWLLLAILMGHSLALLLQVKFGGSYVGKGS 180

Query: 181 LIKNLARAFGVLLMIGIYLLIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSL 240
           LIKNLARAFGVLLMIGIYLLIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSL
Sbjct: 181 LIKNLARAFGVLLMIGIYLLIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSL 240

Query: 241 ILLLAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRR 300
           ILLLAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRR
Sbjct: 241 ILLLAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRR 300

Query: 301 TQLLGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVL 360
           TQLLGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVL
Sbjct: 301 TQLLGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVL 360

Query: 361 RSLPITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNGLSSLYIAPLVLAPLLTSGIGMK 420
           RSLPITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNGLSSLYIAPLVLAPLLTSGIGMK
Sbjct: 361 RSLPITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNGLSSLYIAPLVLAPLLTSGIGMK 420

Query: 421 YVGGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLSYIILDSIVIIGSLLI 480
           YVGGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLSYIILDSIVIIGSLLI
Sbjct: 421 YVGGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLSYIILDSIVIIGSLLI 480

Query: 481 WRW 483
           WRW
Sbjct: 481 WRW 483


>pir||A71067 hypothetical protein PH1231 - Pyrococcus horikoshii
           >gi|3257648|dbj|BAA30331.1| (AP000005) 483aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 483
           
 Score =  735 bits (1878), Expect = 0.0
 Identities = 347/483 (71%), Positives = 424/483 (86%)

Query: 1   MIREVVRITYRELHYRMLRENLNISRNEKKLMDSLKWQGNIKLAVGLQSFAFLMFGFMIG 60
           M+ E++R+TYRELHYRM++EN++ISRNEKKLM+SLKWQGNIKLAVGLQS AF++ GFMIG
Sbjct: 1   MLWEIIRVTYRELHYRMIKENVSISRNEKKLMNSLKWQGNIKLAVGLQSLAFMLLGFMIG 60

Query: 61  LSIYMAPRELRGVLFAPNLIVPFIYSLYTTSLMVAYLRSGKVLEPLKALPIPKIGFIMSV 120
           LSIY+APR++RG+LFAPNLIVPFIYS+YTTSLMVAYL+SGKVLEPLK+LPIP++G I+SV
Sbjct: 61  LSIYLAPRDVRGILFAPNLIVPFIYSIYTTSLMVAYLKSGKVLEPLKSLPIPRLGLILSV 120

Query: 121 LILVDVLPGFFLLLPSVLFLGGIVESLLGLGWLLLAILMGHSLALLLQVKFGGSYVGKGS 180
           LIL+D LPGFFLLLPS  FLGGI E LLG+GWL+LA+LMGHSLAL+ QVKFGGSYVG+GS
Sbjct: 121 LILIDTLPGFFLLLPSTFFLGGIGEDLLGIGWLILAVLMGHSLALVFQVKFGGSYVGRGS 180

Query: 181 LIKNLARAFGVLLMIGIYLLIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSL 240
           ++KNLA+AFG+LLMI IYLLIQGIV+FVK NVE LTPIF+EY+VVFPM ASTIY P KS 
Sbjct: 181 ILKNLAKAFGILLMISIYLLIQGIVKFVKENVEMLTPIFKEYEVVFPMVASTIYNPLKSF 240

Query: 241 ILLLAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRR 300
           + L+ YAIPF MLY+YGIR+LWESLE EKV G V +EYSI+    ++S + KD+K+IFRR
Sbjct: 241 MFLIIYAIPFGMLYIYGIRRLWESLEVEKVEGNVKVEYSIRSMNSLVSLVFKDYKIIFRR 300

Query: 301 TQLLGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVL 360
           TQLLGGFLAP+Y+G+WWIY V K GFPLR T +LM+ IG+ ASITLD  FK+ELEGFE L
Sbjct: 301 TQLLGGFLAPVYMGLWWIYMVGKEGFPLRSTGMLMITIGILASITLDAVFKMELEGFETL 360

Query: 361 RSLPITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNGLSSLYIAPLVLAPLLTSGIGMK 420
           +SLPI+K++FLLTKGL+MST+P+FLNLT+  L+  +NG  +LYI PLVL+PLL SGI MK
Sbjct: 361 KSLPISKKRFLLTKGLVMSTIPIFLNLTLLALSLIFNGTKALYIFPLVLSPLLASGISMK 420

Query: 421 YVGGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLSYIILDSIVIIGSLLI 480
           YV  KI DVEMPNL   DGIVIL+LN+IPIV+  IL+FA+ +P+SYI++DS++IIGSL++
Sbjct: 421 YVSKKINDVEMPNLGLSDGIVILILNLIPIVIGGILLFAIKDPISYIVVDSMIIIGSLIL 480

Query: 481 WRW 483
           W W
Sbjct: 481 WGW 483


>gi|11498740 A. fulgidus predicted coding region AF1140 [Archaeoglobus fulgidus]
           >gi|7483559|pir||C69392 hypothetical protein AF1140 -
           Archaeoglobus fulgidus >gi|2649452|gb|AAB90108.1|
           (AE001025) A. fulgidus predicted coding region AF1140
           [Archaeoglobus fulgidus]
           Length = 439
           
 Score = 93.2 bits (228), Expect = 6e-18
 Identities = 107/473 (22%), Positives = 208/473 (43%), Gaps = 55/473 (11%)

Query: 10  YRELHYRMLRENLNISRNEKKLMDSLKWQGNIKLAVGLQSFAFLMFGFMIGLSIYMAPRE 69
           YRE++Y+ ++ N  IS   ++++ S++ + ++++ V    F     G  +    +++   
Sbjct: 3   YREMNYQNMKRNPQISH--ERVVKSMR-KFSLRVQVAKSFFIMTFLGSFLCWVAFISSGL 59

Query: 70  LRGVLFAPNLIVPFIYSLYTTSLMVAYLRSGKVLEPLKALPIP------KIGFIMSVLIL 123
              ++F  +L+   IY        +A   S +V EPL+ LP+        + FI S+ IL
Sbjct: 60  GLSLIFTLSLVFSQIYPAQN----IAISASSRVFEPLRYLPVRFSERMLVVFFIDSINIL 115

Query: 124 VDVLPGFFLLLPSVLFLGGIVESLLGLGWLLLAILMGHSLALLLQVKFGGSYVGKGSLIK 183
               P   +L+   L+ G     L  L W++ AIL+G+S+  L    FG           
Sbjct: 116 AFATPTIAVLMVKNLYFG-----LYSLLWIIAAILLGYSMVFLYYALFG----------V 160

Query: 184 NLARAFGVLLMIGIYLLIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSLILL 243
            +   F   ++ GI  L   ++ F  R        FQE   + P     +        LL
Sbjct: 161 KVRSGFSKSVLAGI--LFFAVLVFALRR-------FQEIPDLTPYLTPHL--------LL 203

Query: 244 LAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRRTQL 303
           L+YA   A + L    ++W S+   +++ EV     +   + + + L KDF++I R+  L
Sbjct: 204 LSYAASSATIKL-STGRVWRSILNPEIV-EVKGSSRLSSGSPLRAMLIKDFRLILRKNAL 261

Query: 304 LGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVLRSL 363
               + PL I +  + ++A       ++  ++  I   +  T+D+     LE  + LR L
Sbjct: 262 FP-LIVPLVIVMPNVVSIANMP---NLSIFIITTISTLS--TIDLRIIGNLENVDFLRML 315

Query: 364 PITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNGLSSLYIAPLVLAPLLTSGIGMKYV- 422
           P++KR F+++K  L+  +    +L    +AF  +  +  Y+      P + S +    + 
Sbjct: 316 PLSKRGFVMSKACLIFVISFAASLPAGSIAFIVS-QNPFYLFMAFAIPAIVSMLSSLIIF 374

Query: 423 GGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLSYIILDSIVII 475
             K  ++  P + F   I +LL+N   +       F +S+P++ II   + ++
Sbjct: 375 WQKGEEIYFPEVGFLKWIGLLLVNFGAVYAVLSPRFILSQPVADIISSVLTLL 427


>gi|11498004 A. fulgidus predicted coding region AF0392 [Archaeoglobus fulgidus]
           >gi|7483416|pir||H69298 hypothetical protein AF0392 -
           Archaeoglobus fulgidus >gi|2650243|gb|AAB90847.1|
           (AE001077) A. fulgidus predicted coding region AF0392
           [Archaeoglobus fulgidus]
           Length = 484
           
 Score = 74.1 bits (179), Expect = 3e-12
 Identities = 92/356 (25%), Positives = 160/356 (44%), Gaps = 45/356 (12%)

Query: 128 PGFFLLLPSVLFLG-----GIVESLLGLGWLLLAILMGH-SLALLLQVKFGGSYVGKGSL 181
           P    LL  ++ +G     G++ +LLG     LA++MG  S+ +LL  + G    G+ SL
Sbjct: 124 PAVIALLSLLVLVGMRNPAGLLPALLGF----LAVIMGALSIVILLGKRLGSVQTGR-SL 178

Query: 182 IKNLARAFGVLLMI----GIYLLIQ-GIVQFVKRNVETLTPIFQEYDVVFPMSAST-IYY 235
                R FG++  +    G+YL+ Q  I     +N E        YD +FP+S    I  
Sbjct: 179 RAAFFRIFGLIAWLVSIYGLYLINQLAIYLMTFKNYEA-------YDSLFPISYGLWISQ 231

Query: 236 PF--KSLILLLAYAIPFAMLYLYGIRKLWESLEGEKVIGEVSLEYSIKPRALILSFLSKD 293
           PF  K   L L Y     +L+ Y +R+L +  E  K  G +   + IK R  + + + KD
Sbjct: 232 PFSAKYAALSLFYFALITLLFFYAVRELSKE-EIAKHYGSLK-GWKIKRRGKMTAMVIKD 289

Query: 294 FKMIFRRTQLLGGFLAPLYIGIWWIYNVAKSGFPLRMTALLMVA-IGVFASITLDMSFKI 352
           FK +FR  QL    L P+Y  +  +       F ++++ +  V  + +F +IT+     +
Sbjct: 290 FKQLFRNPQLFVIALLPIYGALMQLV------FYIKLSEVASVLYLQIFLAITVSSFMSL 343

Query: 353 ELEGFEVLRSLPITKRKFLLTKGLLMSTLPLFLNLTIFCLAFTYNG---LSSLYIAPLVL 409
           E   +  + +LP+T  +   +K +L   L  F+++ I      Y G   ++SL + P   
Sbjct: 344 ERSSY--ITALPLTDLEMKFSK-ILEGLLIYFVSMGIVAAVVIYKGGNLINSLSLFPTGF 400

Query: 410 APLLTSGIGMKYVGGKIRDVEMPNLTFFDGIVILLLNIIPIVVSAILVFAVSEPLS 465
           A +L +    + +  +  +VE    T     ++L    +P  V  + V  +  P S
Sbjct: 401 AVVLVAVQFSRRLTSEPVNVEAVIATLISFFIVL----VPAAVGGVAVLILKAPFS 452


>emb|CAC11213.1| (AL445063) conserved hypothetical membrane protein [Thermoplasma
           acidophilum]
           Length = 515
           
 Score = 73.4 bits (177), Expect = 6e-12
 Identities = 78/355 (21%), Positives = 150/355 (41%), Gaps = 38/355 (10%)

Query: 41  IKLAVGLQSFAFLMFGFMIGLSIYMAPRELRGVLFAPNLIVPFIYSLY----TTSLMVAY 96
           + ++ G  SF+F++F  ++     M   E R    +  +++ F+YSL+     + L    
Sbjct: 18  VNISYGATSFSFIVFSLILVAPSLM---EHRIYTLSSVVLLLFVYSLFINISNSLLFFVS 74

Query: 97  LRSGKVLEPLKALPIPKIGFIMSVL--------ILVDVLPGFFLLLPSVLFLGGIVESLL 148
           +    +L+PL+ LP+     +++V          L  VLP  FL   +   LG     ++
Sbjct: 75  VNINHILDPLRILPVDFPDHVIAVSWFIYTGSSSLFAVLPAIFL---AAFLLGDPYILVI 131

Query: 149 GLGWLLLAILMGHSLALLLQVKFGGSYVGKGSLIKNLARAFG-VLLMIGIYL-------- 199
           GL W + ++L+G+ +   + V FG    GK +   N+ R  G ++ ++ ++         
Sbjct: 132 GLIWSIFSVLLGYIIGSSIFVAFGSRISGKRTRSTNILRNVGRIVFLVFVFAIFEIILYN 191

Query: 200 --LIQGIVQFVKRNVETLTPIFQEYDVVFPMSASTIYYPFKSLILLLAYAIPFAMLYLYG 257
             ++ GI+  +        PIF     VF      IY      I+ + Y    +  ++Y 
Sbjct: 192 ANIVNGIIPRLPYPYSYFIPIFNIQSTVFFFHG--IYMQATGFIISMVYTALASFAFIYV 249

Query: 258 IRKLWESL--EGEKVIGEVSLEYSIKPRALILSFLSKDFKMIFRRTQLLGGFLAPLY--- 312
            RK +  L     +    V  +   + R+   SF SKD K+  R++Q L   + PL+   
Sbjct: 250 NRKAFYRLLEPTARNQSRVKTQMKAEVRSRPFSFFSKDLKISSRKSQNLVLLIMPLFFVF 309

Query: 313 --IGIWWIYNVAKSGFPLRMTALLMVAIGVFASITLDMSFKIELEGFEVLRSLPI 365
             I    +Y       P+ +   ++  + V +S    +   IE  G   +++LP+
Sbjct: 310 PTIMSEVLYAPTSKADPIILYNAMVAFVIVTSSFYSILFLVIEGNGISFIKALPL 364


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.331    0.148    0.435 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163387508
Number of Sequences: 2977
Number of extensions: 6816501
Number of successful extensions: 24270
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24260
Number of HSP's gapped (non-prelim): 5
length of query: 483
length of database: 189,106,746
effective HSP length: 52
effective length of query: 431
effective length of database: 157,985,422
effective search space: 68091716882
effective search space used: 68091716882
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 167 (69.5 bits)