BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1698 (PAB1698) DE:Hypothetical protein
         (102 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75077 hypothetical protein PAB1698 - Pyrococcus abyssi (st...   202  7e-52
pir||C71067 hypothetical protein PH1233 - Pyrococcus horikoshii ...   161  3e-39

>pir||F75077 hypothetical protein PAB1698 - Pyrococcus abyssi (strain Orsay)
           >gi|5458435|emb|CAB49923.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 102
           
 Score =  202 bits (509), Expect = 7e-52
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MLGFFRRKKKEEEEKITGKPVGKVKVENILIVGFKTVIICEVLEGMVKVGYKVRKGKKVA 60
           MLGFFRRKKKEEEEKITGKPVGKVKVENILIVGFKTVIICEVLEGMVKVGYKVRKGKKVA
Sbjct: 1   MLGFFRRKKKEEEEKITGKPVGKVKVENILIVGFKTVIICEVLEGMVKVGYKVRKGKKVA 60

Query: 61  GIVSMEREHKKVEFAIPGDKIGIMLEKNIGAEKGDILEVFIV 102
           GIVSMEREHKKVEFAIPGDKIGIMLEKNIGAEKGDILEVFIV
Sbjct: 61  GIVSMEREHKKVEFAIPGDKIGIMLEKNIGAEKGDILEVFIV 102


>pir||C71067 hypothetical protein PH1233 - Pyrococcus horikoshii
           >gi|3257650|dbj|BAA30333.1| (AP000005) 101aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 101
           
 Score =  161 bits (402), Expect = 3e-39
 Identities = 79/102 (77%), Positives = 93/102 (90%), Gaps = 1/102 (0%)

Query: 1   MLGFFRRKKKEEEEKITGKPVGKVKVENILIVGFKTVIICEVLEGMVKVGYKVRKGKKVA 60
           M  FF+RK  E+E+ +TGKPVGKVKVE+IL VGF+ VIICEVLEG+VKVGYKV+KGKKVA
Sbjct: 1   MFKFFKRKG-EDEKDVTGKPVGKVKVESILKVGFRDVIICEVLEGIVKVGYKVKKGKKVA 59

Query: 61  GIVSMEREHKKVEFAIPGDKIGIMLEKNIGAEKGDILEVFIV 102
           GIVSMEREHKK+EFAIPGD++G+MLEKNI AEK DILEV++V
Sbjct: 60  GIVSMEREHKKIEFAIPGDRVGMMLEKNINAEKDDILEVYLV 101


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.144    0.392 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35805118
Number of Sequences: 2977
Number of extensions: 1302560
Number of successful extensions: 4602
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4600
Number of HSP's gapped (non-prelim): 2
length of query: 102
length of database: 189,106,746
effective HSP length: 53
effective length of query: 49
effective length of database: 157,386,935
effective search space: 7711959815
effective search space used: 7711959815
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 159 (66.3 bits)