BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1699 (PAB1699) DE:Hypothetical protein
(280 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75077 hypothetical protein PAB1699 - Pyrococcus abyssi (st... 573 e-163
pir||D71067 hypothetical protein PH1234 - Pyrococcus horikoshii ... 539 e-152
gi|11498504 conserved hypothetical protein [Archaeoglobus fulgid... 275 3e-73
pir||B69174 conserved hypothetical protein MTH560 - Methanobacte... 273 1e-72
sp|Q58527|YB27_METJA HYPOTHETICAL PROTEIN MJ1127 >gi|2128683|pir... 270 1e-71
gb|AAG19874.1| (AE005071) Vng1610c [Halobacterium sp. NRC-1] 190 2e-47
emb|CAC12475.1| (AL445067) conserved hypothetical protein [Therm... 124 1e-27
pir||G72699 hypothetical protein APE1014 - Aeropyrum pernix (str... 100 2e-20
>pir||D75077 hypothetical protein PAB1699 - Pyrococcus abyssi (strain Orsay)
>gi|5458433|emb|CAB49921.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 280
Score = 573 bits (1461), Expect = e-163
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MIILDNHFHVDPINGLFLEAVKQFHRAGGTHLIVVYKSAHDYGFAGMKGEDFMRAMDFHV 60
MIILDNHFHVDPINGLFLEAVKQFHRAGGTHLIVVYKSAHDYGFAGMKGEDFMRAMDFHV
Sbjct: 1 MIILDNHFHVDPINGLFLEAVKQFHRAGGTHLIVVYKSAHDYGFAGMKGEDFMRAMDFHV 60
Query: 61 ELVDIINKETPVKAYAVVGVHPAEFDYLARLRGIEFAKREVMKALEHAQRLCLDGKAIGI 120
ELVDIINKETPVKAYAVVGVHPAEFDYLARLRGIEFAKREVMKALEHAQRLCLDGKAIGI
Sbjct: 61 ELVDIINKETPVKAYAVVGVHPAEFDYLARLRGIEFAKREVMKALEHAQRLCLDGKAIGI 120
Query: 121 GEVGRPHYPVPQEIWEASIELMKYAMSLAKDADCAVQLHTESFDEKKFRELGEYVKEVGI 180
GEVGRPHYPVPQEIWEASIELMKYAMSLAKDADCAVQLHTESFDEKKFRELGEYVKEVGI
Sbjct: 121 GEVGRPHYPVPQEIWEASIELMKYAMSLAKDADCAVQLHTESFDEKKFRELGEYVKEVGI 180
Query: 181 KPYKVVKHFSPPLVKVAEEVGVFPSIIASRKNIEEAIKQGNRFLMETDYIDDKKRPGAIL 240
KPYKVVKHFSPPLVKVAEEVGVFPSIIASRKNIEEAIKQGNRFLMETDYIDDKKRPGAIL
Sbjct: 181 KPYKVVKHFSPPLVKVAEEVGVFPSIIASRKNIEEAIKQGNRFLMETDYIDDKKRPGAIL 240
Query: 241 GPKTVPRRTKEFLEKGLFTEEDVYKIHVENPKKVYGIELE 280
GPKTVPRRTKEFLEKGLFTEEDVYKIHVENPKKVYGIELE
Sbjct: 241 GPKTVPRRTKEFLEKGLFTEEDVYKIHVENPKKVYGIELE 280
>pir||D71067 hypothetical protein PH1234 - Pyrococcus horikoshii
>gi|3257651|dbj|BAA30334.1| (AP000005) 279aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 279
Score = 539 bits (1374), Expect = e-152
Identities = 255/279 (91%), Positives = 273/279 (97%)
Query: 1 MIILDNHFHVDPINGLFLEAVKQFHRAGGTHLIVVYKSAHDYGFAGMKGEDFMRAMDFHV 60
MIILDNHFHVDPINGLFLEAVKQFHRAGGTHL+VVYKSAHDYGF GMKGEDFMRAMDFHV
Sbjct: 1 MIILDNHFHVDPINGLFLEAVKQFHRAGGTHLVVVYKSAHDYGFGGMKGEDFMRAMDFHV 60
Query: 61 ELVDIINKETPVKAYAVVGVHPAEFDYLARLRGIEFAKREVMKALEHAQRLCLDGKAIGI 120
ELV+IINKETPVKAYAVVGVHPAEFDYLAR RGIE+AKREVMKALEHAQRLCLDGKAIGI
Sbjct: 61 ELVEIINKETPVKAYAVVGVHPAEFDYLARARGIEYAKREVMKALEHAQRLCLDGKAIGI 120
Query: 121 GEVGRPHYPVPQEIWEASIELMKYAMSLAKDADCAVQLHTESFDEKKFRELGEYVKEVGI 180
GEVGRPHYPVP+EIWEASIE+MKYAM+LAK+ADCAVQLHTESFDE+KFRELG YV+EVGI
Sbjct: 121 GEVGRPHYPVPEEIWEASIEIMKYAMALAKEADCAVQLHTESFDEEKFRELGRYVREVGI 180
Query: 181 KPYKVVKHFSPPLVKVAEEVGVFPSIIASRKNIEEAIKQGNRFLMETDYIDDKKRPGAIL 240
KPY+VVKHFSPPLVKVAEEVG+FPSIIASRKNIEEAIKQG RFLMETDYIDDK+RPGA+L
Sbjct: 181 KPYRVVKHFSPPLVKVAEEVGIFPSIIASRKNIEEAIKQGTRFLMETDYIDDKRRPGAVL 240
Query: 241 GPKTVPRRTKEFLEKGLFTEEDVYKIHVENPKKVYGIEL 279
GPKTVPRRTKE L+KG+ TE+DVY+IHVENP+KVYGIEL
Sbjct: 241 GPKTVPRRTKELLQKGILTEDDVYRIHVENPEKVYGIEL 279
>gi|11498504 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429958|pir||C69362 conserved hypothetical protein
AF0899 - Archaeoglobus fulgidus
>gi|2649698|gb|AAB90339.1| (AE001041) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 274
Score = 275 bits (697), Expect = 3e-73
Identities = 140/280 (50%), Positives = 192/280 (68%), Gaps = 7/280 (2%)
Query: 1 MIILDNHFHVDPINGLFLEAVKQFHRAGGTHLIVVYKSAHDYGFAGMKGEDFMRAMDFHV 60
MII D+H H+ N L L+A++QF AGGTH+ +V H YG G+DF + H+
Sbjct: 1 MIITDDHMHL--YNHLKLKALEQFRDAGGTHVFLVNLLCHHYGIRPTSGKDFREVFERHL 58
Query: 61 ELVDIINKETPVKAYAVVGVHPAEFDYLARLRGIEFAKREVMKALEHAQRLCLDGKAIGI 120
LV+ NK VKAYAV+GVHPAE + G E A + +ALE A + +GKA+ +
Sbjct: 59 SLVEKANKI--VKAYAVLGVHPAEITVIGDRIGHEKAAEMMKEALEIAGKYVEEGKAVAL 116
Query: 121 GEVGRPHYPVPQEIWEASIELMKYAMSLAKDADCAVQLHTESFDEKKFRELGEYVKEVGI 180
+ GRPHYPV + +W+ S +++++A +AKD CA+QLHTES+ ++ E+ + EVG+
Sbjct: 117 -KSGRPHYPVSRHVWQLSNDVLRHAFEVAKDVGCAIQLHTESYTKEGMLEIAKMADEVGL 175
Query: 181 KPYKVVKHFSPPLVKVAEEVGVFPSIIASRKNIEEAIKQGNRFLMETDYIDDKKRPGAIL 240
K KVVKHFSPPL+K EE+G+FPS++A N+ +A +QGNRF +ETDYIDD+KRPGA+L
Sbjct: 176 KREKVVKHFSPPLIKEFEEIGIFPSVLAGNNNVLKAAEQGNRFTVETDYIDDRKRPGAVL 235
Query: 241 GPKTVPRRTKEFLEKGLFTEEDVYKIHVENPKKVYGIELE 280
GPKTVPR+ KE +E G E+ YKI VEN +KVYG+ELE
Sbjct: 236 GPKTVPRKVKELIELGY--EDIAYKICVENVEKVYGVELE 273
>pir||B69174 conserved hypothetical protein MTH560 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621636|gb|AAB85066.1| (AE000838) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 277
Score = 273 bits (692), Expect = 1e-72
Identities = 144/277 (51%), Positives = 183/277 (65%), Gaps = 6/277 (2%)
Query: 3 ILDNHFHVDPINGLFLEAV-KQFHRAGGTHLIVVYKSAHDYGFAGMKGEDFMRAMDFHVE 61
I DNH HVDP+NG AV ++F+RAGG +I+ K + G D+ + MD +
Sbjct: 5 ITDNHIHVDPVNGEGPVAVAEKFYRAGGRRMIIPNKPSWTIN----AGTDYRKTMDTVLG 60
Query: 62 LVDIINKETPVKAYAVVGVHPAEFDYLARL-RGIEFAKREVMKALEHAQRLCLDGKAIGI 120
V++IN+ET V+A+AVVG+HPAE L R IE A+ + LE+AQ L LDG A+ I
Sbjct: 61 YVEMINRETEVEAHAVVGLHPAELSRLLEAGREIEKAEEMIRNGLEYAQSLVLDGMAVAI 120
Query: 121 GEVGRPHYPVPQEIWEASIELMKYAMSLAKDADCAVQLHTESFDEKKFRELGEYVKEVGI 180
GEVGRPHYPV E A LM YAM LA +A C VQLHTES ++FRE K GI
Sbjct: 121 GEVGRPHYPVSDEELAAHNRLMVYAMELAAEASCPVQLHTESSGPEEFREFAGMAKRAGI 180
Query: 181 KPYKVVKHFSPPLVKVAEEVGVFPSIIASRKNIEEAIKQGNRFLMETDYIDDKKRPGAIL 240
+ Y V+KHFS PL E G+ PS+IASR + + I++G FLMETDY+DD +R GA+L
Sbjct: 181 RKYMVIKHFSGPLTAPEENHGLTPSLIASRDVVRDGIRKGGHFLMETDYLDDIRRAGAVL 240
Query: 241 GPKTVPRRTKEFLEKGLFTEEDVYKIHVENPKKVYGI 277
GPKTVPRRT EF+ KG+FTEED Y+IH E ++VYGI
Sbjct: 241 GPKTVPRRTLEFINKGIFTEEDAYRIHEETVERVYGI 277
>sp|Q58527|YB27_METJA HYPOTHETICAL PROTEIN MJ1127 >gi|2128683|pir||F64440 conserved
hypothetical protein MJ1127 - Methanococcus jannaschii
>gi|1499979|gb|AAB99129.1| (U67555) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 280
Score = 270 bits (684), Expect = 1e-71
Identities = 141/280 (50%), Positives = 186/280 (66%), Gaps = 11/280 (3%)
Query: 3 ILDNHFHVDPINGLFLEAV-KQFHRAGGTHLIVVYKSAHDYGFAGMKGEDFMRAMDFHVE 61
+ DNH HVD +G E V K F+ AGG +IV+ K D +MD V
Sbjct: 9 VTDNHIHVDDKHGYGAEKVAKTFYNAGGKVMIVLNKPTFDGNLTA--------SMDILVR 60
Query: 62 LVDIINKETPVKAYAVVGVHPAEFDYLARLRGIEFAKREVMKALEHAQRLCLDGKAI-GI 120
V+IINK TPVKA+ +VGVHPAE YL + +E AK+ ++ AL +A++L + I GI
Sbjct: 61 DVEIINKNTPVKAFGLVGVHPAELTYLMKFMSLEEAKQRIVDALNYAKKLVEEYDFIVGI 120
Query: 121 GEVGRPHYPVPQEIWEASIELMKYAMSLAKDADCAVQLHTESFDEKKFRELGEYVKEVGI 180
GEVGRPHYPV +++W+AS E++KY M LAKD CA+Q+H ES E++F+E E KEVG+
Sbjct: 121 GEVGRPHYPVSEDVWKASNEILKYCMELAKDIGCAIQIHAESSTEEQFKEFSEMAKEVGL 180
Query: 181 KPYKVVKHFSPPLVKVAEEVGVFPSIIASRKNIEEAIKQGNRFLMETDYIDDKKRPGAIL 240
P KVVKH +V E G+FPSI+ASR N E+ +K+ RF+METDYIDD KRPG L
Sbjct: 181 NPEKVVKHHCGNMVLEGERYGIFPSILASRVN-EDVVKKSLRFVMETDYIDDLKRPGVAL 239
Query: 241 GPKTVPRRTKEFLEKGLFTEEDVYKIHVENPKKVYGIELE 280
G KTVPR T+ +EKG+ EE VYKIH EN +++Y ++LE
Sbjct: 240 GIKTVPRVTRRLIEKGVLDEEGVYKIHKENIERIYDMDLE 279
>gb|AAG19874.1| (AE005071) Vng1610c [Halobacterium sp. NRC-1]
Length = 281
Score = 190 bits (477), Expect = 2e-47
Identities = 110/280 (39%), Positives = 163/280 (57%), Gaps = 13/280 (4%)
Query: 3 ILDNHFHVDPINGLFLEAVKQFHRAGGTHLIVVYKSAHDYGFAGMKGEDFMRAMDFHVEL 62
+LD+H H+D N L+AV+ F RAGGTHL+VV K + G G DF + L
Sbjct: 8 VLDDHLHLDAENQ-GLDAVRDFARAGGTHLLVVNKPSWHLGVEPDTGADFRPVFEETARL 66
Query: 63 VDIINKETPVKAYAVVGVHPAEFDYLARLRGIEFAK-REVMKA-LEHAQRLCLDGKAIGI 120
V+ + +A+ V+GVHP L RG + R++M A ++ A + +G+A+ +
Sbjct: 67 VEAAREILDGEAWPVLGVHPGLVSRLVEERGFSPGEARDLMCAGIDAAAAVASEGRAVAL 126
Query: 121 GEVGRPHYPVPQEIWEASIELMKYAMSLAKDADCAVQLHTESFDEKKFRELGEYVKEVGI 180
+ GRPHY V +WEAS ++++A A D ++QLHTES D+ +GE+ G+
Sbjct: 127 -KSGRPHYDVSSAVWEASNAVIRHACERAADVGVSLQLHTESTDD--LTAVGEWASAAGL 183
Query: 181 KPYKVVKHFSPPLVKVAEEVGVFPSIIASRKNIEEAIKQGNRFLMETDYIDDKKRPGAIL 240
P VVKH++ + G PS++ ++ +++A+ G RFLMETD+IDD RPGA++
Sbjct: 184 APEAVVKHYASGRLS-----GCTPSVMCDKEYLQDAVGSGERFLMETDFIDDADRPGAVM 238
Query: 241 GPKTVPRRTKEFLEKGLFTEEDVYKIHVENPKKVYGIELE 280
GPKTVPRR + LE G E+ V + HVE P VYGI+ E
Sbjct: 239 GPKTVPRRVRWLLESG--HEDAVRRAHVETPAAVYGIDTE 276
>emb|CAC12475.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 276
Score = 124 bits (309), Expect = 1e-27
Identities = 83/273 (30%), Positives = 135/273 (49%), Gaps = 11/273 (4%)
Query: 3 ILDNHFHVDPINGLFLEAVKQFHRAGGTHLIVVYKSAHDYGFAGMKGEDFMRAMDFHVEL 62
I DNHFH++P + FL A F R+GGT L + +HD E + R D + +
Sbjct: 8 IFDNHFHLNPKSN-FLGAANIFKRSGGTTLNLTNLPSHD-----AITEYYRRLYDDTIRI 61
Query: 63 VDIINKETPVKAYAVVGVHPAEFDYLARLRGIEFAKREVMKALEHAQRLCLDGKAIGIGE 122
D+++ E ++ +G +P FDY R E+M L+ A + DGKA IGE
Sbjct: 62 GDLVHYELGLEMLITIGPYP--FDYFFFERYGSDPVNEMMHGLDLAAKYIEDGKAEAIGE 119
Query: 123 VGRPHYPVPQEIWEASIELMKYAMSLAKDADCAVQLHTESFDEKKFRELGEYVKEVGIKP 182
+G PH P P+ + E E++ YAM +A D D + +HT + + ++ + K G
Sbjct: 120 IGFPHVPQPESVMERFWEMLDYAMKIAHDVDAPIVMHTYDLSCEDYAKIEKIAKVNG--S 177
Query: 183 YKVVKHFSPPLVKVAEEVGVFPSIIASRKNIEEAIKQGNRFLMETDYIDDKKRPGAILGP 242
VVKH + P + G+ S+ ASR + +++ F++ETD+I+D L P
Sbjct: 178 VSVVKHHARP-SDLTCNTGIARSVPASRSAVRKSLLLSRNFMLETDFINDPIDANRFLPP 236
Query: 243 KTVPRRTKEFLEKGLFTEEDVYKIHVENPKKVY 275
+VP+R + L++ E + I P+ +Y
Sbjct: 237 DSVPKRAQMILQEYDDGSEILNNIFNTIPESIY 269
>pir||G72699 hypothetical protein APE1014 - Aeropyrum pernix (strain K1)
>gi|5104684|dbj|BAA79999.1| (AP000060) 293aa long
hypothetical protein [Aeropyrum pernix]
Length = 293
Score = 100 bits (246), Expect = 2e-20
Identities = 73/284 (25%), Positives = 135/284 (46%), Gaps = 11/284 (3%)
Query: 1 MIILDNHFHVDPINGLFL-EAVKQFHRAGGTHLIVVYKSAHDYGFAGMKGEDFMRAMDFH 59
+++ D H H +P GL E ++F R GG ++ + YG A E + R + H
Sbjct: 7 ILVADAHMHTNPTRGLGAREVARRFRREGGWFAALLTLTTWSYGLAPTGVEAYRRMYEIH 66
Query: 60 VELVDIINKETPVKAYAVVGVHPAEFDYLA--RLRGIEFAKREVMKALEHAQRLCLDGKA 117
+ +E ++ G+HPAE D + + E A ++A+E +RLC +G
Sbjct: 67 LRECRAAREEG-LRVACFAGIHPAEVDRMIDKHRQPPEKALETALEAVEVLRRLCREGAI 125
Query: 118 IGIGEVGRPHYPV-PQEIWEASIELMKYAMSLAKDADCAVQLHTESFDEKKFRELGEYVK 176
G+GEVGR HY P + A + +++ A + A + C +QLH E+ + ++
Sbjct: 126 DGVGEVGRQHYRTSPLRVAIAEV-VLEEAAAAALEEGCLLQLHLENEGPATVETVDRILR 184
Query: 177 EVGIKPYK----VVKHFSPPLVKVAEEVGVFPSIIASRKNIEEAI-KQGNRFLMETDYID 231
G + + H + + K A G +I K +E A + +++E+DY+D
Sbjct: 185 RAGATGARRGMVIFHHATLRVAKEAVARGYNATIPGVPKLLEHAAANEPPDYMVESDYLD 244
Query: 232 DKKRPGAILGPKTVPRRTKEFLEKGLFTEEDVYKIHVENPKKVY 275
D RPGA++ P + ++ +E + T E V + +++ ++V+
Sbjct: 245 DPARPGAVVEPWKMAQKLREIASRTPETREWVRRTNIDLVERVF 288
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106304266
Number of Sequences: 2977
Number of extensions: 4335497
Number of successful extensions: 10628
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10604
Number of HSP's gapped (non-prelim): 8
length of query: 280
length of database: 189,106,746
effective HSP length: 54
effective length of query: 226
effective length of database: 156,788,448
effective search space: 35434189248
effective search space used: 35434189248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)