BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1704 (PAB1704) DE:MEMBRANE PROTEIN
         (264 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75076 membrane protein PAB1704 - Pyrococcus abyssi (strain...   505  e-142
pir||E72257 hypothetical protein TM1404 - Thermotoga maritima (s...    89  4e-17
pir||C72492 probable membrane protein APE2578 - Aeropyrum pernix...    86  4e-16
pir||D75108 daunorubicin resistance membrane protein (drrb) PAB1...    84  1e-15
gi|11499467 daunorubicin resistance membrane protein (drrB) [Arc...    82  9e-15
gb|AAK42314.1| Membrane conserved hypothetical protein [Sulfolob...    81  1e-14
emb|CAC11999.1| (AL445065) conserved hypothetical membrane prote...    80  3e-14
pir||A71081 hypothetical protein PH0911 - Pyrococcus horikoshii ...    79  5e-14
pir||S32909 hypothetical protein 5 - Streptomyces antibioticus >...    74  2e-12
pir||T50567 probable ABC-type transport protein, transmembrane c...    73  3e-12
pir||S74047 hypothetical protein c0111 - Sulfolobus solfataricus...    73  5e-12

>pir||A75076 membrane protein PAB1704 - Pyrococcus abyssi (strain Orsay)
           >gi|5458422|emb|CAB49910.1| (AJ248286) MEMBRANE PROTEIN
           [Pyrococcus abyssi]
           Length = 264
           
 Score =  505 bits (1286), Expect = e-142
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MTMMVNAINSFKVAISRETKIGIDLEFLLGTLFEPMIYVLLFGPLMGKLIGDLEVNGMRI 60
           MTMMVNAINSFKVAISRETKIGIDLEFLLGTLFEPMIYVLLFGPLMGKLIGDLEVNGMRI
Sbjct: 1   MTMMVNAINSFKVAISRETKIGIDLEFLLGTLFEPMIYVLLFGPLMGKLIGDLEVNGMRI 60

Query: 61  SYLAFMFPGVLTLVSINQGFRGATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRA 120
           SYLAFMFPGVLTLVSINQGFRGATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRA
Sbjct: 61  SYLAFMFPGVLTLVSINQGFRGATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRA 120

Query: 121 IIAMIVLSILTLIIAKDASITLTGFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAIS 180
           IIAMIVLSILTLIIAKDASITLTGFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAIS
Sbjct: 121 IIAMIVLSILTLIIAKDASITLTGFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAIS 180

Query: 181 GIVILPMMFLSTVFYPETVFESSKVLSILVSINPMTHASNLVRSFIYGTHLQHSTMVVSL 240
           GIVILPMMFLSTVFYPETVFESSKVLSILVSINPMTHASNLVRSFIYGTHLQHSTMVVSL
Sbjct: 181 GIVILPMMFLSTVFYPETVFESSKVLSILVSINPMTHASNLVRSFIYGTHLQHSTMVVSL 240

Query: 241 AYLLVLAFIGMLIGLRGFKAALEK 264
           AYLLVLAFIGMLIGLRGFKAALEK
Sbjct: 241 AYLLVLAFIGMLIGLRGFKAALEK 264


>pir||E72257 hypothetical protein TM1404 - Thermotoga maritima (strain MSB8)
           >gi|4981968|gb|AAD36475.1|AE001793_5 (AE001793)
           antibiotic ABC transporter, transmembrane protein,
           putative [Thermotoga maritima]
           Length = 256
           
 Score = 89.3 bits (218), Expect = 4e-17
 Identities = 52/236 (22%), Positives = 114/236 (48%), Gaps = 6/236 (2%)

Query: 28  LLGTLFEPMIYVLLFGPLMGKLIGDLEVNGM--RISYLAFMFPGVLTLVSINQGFRGATT 85
           ++G +  P+I+++ FG    K+  +     M   + YL ++ PG+  +   N  F    +
Sbjct: 22  VIGMIINPLIWIIFFGLGWSKVFDNPWAKMMFGGVDYLTYLAPGIFAMTVFNMSFISGVS 81

Query: 86  FIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRAIIAMIVLSILTLIIAKDASITLTGF 145
            I D+ +G  + +   P  R +    +I+   I  ++  +++ +    +A+  S+ ++G 
Sbjct: 82  LIWDKQFGFFKEVLVAPSSRRLSITGRIVGDAIVTVLQGLIILVFNYFLAE--SLKISGL 139

Query: 146 IGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAISGIVILPMMFLSTVFYPETVFESSKV 205
           + +L V  L+ V ++SF I L  K ++      I   +++P++FLS   YP  +      
Sbjct: 140 LPALAVGFLMSVTIASFGIALALKMESTEGFQMIMMTLMMPLVFLSGAMYP--IDSMPNW 197

Query: 206 LSILVSINPMTHASNLVRSFIYGTHLQHSTMVVSLAYLLVLAFIGMLIGLRGFKAA 261
           +  L  INP+T+A +  R ++ G  +   +  +    L +L  +G+++ +  F+ A
Sbjct: 198 MKALAYINPLTYAVDASRGYLVGEKVMKFSFGLDWGILSILMLVGLILAMESFERA 253


>pir||C72492 probable membrane protein APE2578 - Aeropyrum pernix (strain K1)
           >gi|5106284|dbj|BAA81595.1| (AP000064) 283aa long
           hypothetical membrane protein [Aeropyrum pernix]
           Length = 283
           
 Score = 86.2 bits (210), Expect = 4e-16
 Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 10/206 (4%)

Query: 62  YLAFMFPGVLTLVSINQGFRGATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIR-A 120
           Y  ++  G+L + S+ Q   GA   + DR  G L  L   P+PR  +F +K+L    R  
Sbjct: 82  YFTYVATGMLAVFSLFQSMFGAVGVVFDRRIGYLTRLLASPIPRFSIFASKVLGTLFRIT 141

Query: 121 IIAMIVLSI-LTLIIAKDASITLTGFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAI 179
           ++++I+L+I   L +     IT+   + + LV  L+ + LSS    +     +  +  A+
Sbjct: 142 VLSLILLAIAYPLGLHLKPGITIIDLVMAWLVLMLMSLGLSSLFTGMAFNITHQEVLFAL 201

Query: 180 SGIVILPMMFLSTVFYPETVFESSKVLSILVSINPMTHASNLVRSFIYGTHLQHSTMVVS 239
           + ++ LP+MF S+  +P  +  +   L  +  +NP+THA++LVR ++ G  L+    V+S
Sbjct: 202 ANLINLPLMFSSSALFPIDLMPN--WLKTVAQVNPITHAADLVRYYLVGKPLEDP--VMS 257

Query: 240 LAYLLVLAFI----GMLIGLRGFKAA 261
           +AYL VL       G  + + G K A
Sbjct: 258 IAYLAVLTLFLLAAGYTLAINGVKEA 283


>pir||D75108 daunorubicin resistance membrane protein (drrb) PAB1924 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458092|emb|CAB49581.1| (AJ248285) daunorubicin
           resistance membrane protein (drrB) [Pyrococcus abyssi]
           Length = 257
           
 Score = 84.3 bits (205), Expect = 1e-15
 Identities = 58/230 (25%), Positives = 111/230 (48%), Gaps = 14/230 (6%)

Query: 28  LLGTLFEPMIYVLLFGPLMGKLIGDLEVNGMR-----ISYLAFMFPGVLTLVSINQGFRG 82
           +LG+L  P+I+++ FG       G     G +     + Y+ ++ PG++ +   N GF  
Sbjct: 25  VLGSLLNPLIWLIFFGKGWA---GAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQ 81

Query: 83  ATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRAIIAMIVLSILTLIIAKDASITL 142
             T I DR +G L+ L   P  R    + + +   + A+I   ++  L+  +   A + L
Sbjct: 82  GITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTL---ADLKL 138

Query: 143 TGFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAISGIVILPMMFLSTVFYPETVFES 202
           +G + +LL+  L+ + +S   + +  +  +      I  +++LPM FLS  FYP  +   
Sbjct: 139 SGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYP--ISTM 196

Query: 203 SKVLSILVSINPMTHASNLVRSFIYGTHLQHSTMV-VSLAYLLVLAFIGM 251
            K +  L  INP+T+A +  R ++ G +   S  +   +  LL + F+G+
Sbjct: 197 PKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVGI 246


>gi|11499467 daunorubicin resistance membrane protein (drrB) [Archaeoglobus
           fulgidus] >gi|7483281|pir||B69485 daunorubicin
           resistance membrane protein (drrB) homolog -
           Archaeoglobus fulgidus >gi|2648660|gb|AAB89369.1|
           (AE000972) daunorubicin resistance membrane protein
           (drrB) [Archaeoglobus fulgidus]
           Length = 251
           
 Score = 81.5 bits (198), Expect = 9e-15
 Identities = 57/249 (22%), Positives = 119/249 (46%), Gaps = 10/249 (4%)

Query: 8   INSFKVAISRETKIGIDLEF-LLGTLFEPMIYVLLFGPLMGKLIGDLEVNGMRISYLAFM 66
           + +F++ + R+ K  +     + G +  P++++  FG    +   D  + G  + YL ++
Sbjct: 1   MRAFEIMVYRQIKRFLRARSRVAGMIINPLVWLTFFGIGWSRAFRDPSIFG-GVDYLTYL 59

Query: 67  FPGVLTLVSINQGFRGATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRAIIAMIV 126
            PG+  +   NQ F    + I DR +G L+ +   P  R      +I      A +   +
Sbjct: 60  SPGIFAMTVFNQSFVSGISVIWDREFGFLKEVLVAPASRKETIAGRIFGDSAVATLQGAI 119

Query: 127 LSILTLIIAKDASITLTGFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAISGIVILP 186
           +  LT  IA+   I + G I +L V  +L V  SSF + + ++ ++      I  +V+LP
Sbjct: 120 ILALTFFIAR---INIFGVIPALGVGFVLAVAFSSFGVSIAARMRSMEGFQMIMALVMLP 176

Query: 187 MMFLSTVFYPETVFESSKVLSILVSINPMTHA---SNLVRSFIYGTHLQHSTMVVSLAYL 243
           ++FLS   YP     +   + +L  +NP+T+A   S ++ + + G      ++++ L+  
Sbjct: 177 LIFLSGAIYPIAFMPA--WMKVLALLNPLTYAVESSRVLLTGVSGIFPLDQSLLILLSLT 234

Query: 244 LVLAFIGML 252
            ++ ++ M+
Sbjct: 235 ALMLYVAMV 243


>gb|AAK42314.1| Membrane conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 290
           
 Score = 81.1 bits (197), Expect = 1e-14
 Identities = 66/254 (25%), Positives = 118/254 (45%), Gaps = 31/254 (12%)

Query: 28  LLGTLFEPMIYVLLFGPLM--GKLIGDLEVN--------------GMRI--------SYL 63
           LL +L +P+ ++ +FG  M  G +  +   N              G+ I         Y 
Sbjct: 33  LLLSLIQPIFWIGIFGKAMNLGSIFTETTFNIPGLTIPKQVLDQIGLEILKQTFGTTDYF 92

Query: 64  AFMFPGVLTLVSINQGFRGATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRAII- 122
           +F+  G+L+ + +    +   + + DR  G L+ + T PVPR  + + K+LSA IR+++ 
Sbjct: 93  SFLAAGMLSFIVLFTSMQSGMSIVWDRRLGVLDRILTTPVPRGNIIIGKVLSAVIRSLVQ 152

Query: 123 AMIVLSILTLI-IAKDASITLTGFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAISG 181
           A IVL +  L+ +     I    F+G      L+   LSS  + L  ++ +    +AI  
Sbjct: 153 ATIVLVVAVLLGMTFAPEINPLDFLGVYAALFLMSFGLSSLFLMLALRATSWESQMAIMN 212

Query: 182 IVILPMMFLSTVFYPETVFESSKVLSILVSINPMTHASNLVRSFIYGTHLQHSTMVVSLA 241
           ++ LP++F S  FYP  V      L  +  INP+T+++ + R  + G     + + +   
Sbjct: 213 LLNLPLLFTSNAFYP--VKSMPYWLKPVAYINPLTYSNGVARGMLLGI---STNLAIDFL 267

Query: 242 YLLVLAFIGMLIGL 255
           YL + A I   IG+
Sbjct: 268 YLGLFAIILSTIGI 281


>emb|CAC11999.1| (AL445065) conserved hypothetical membrane protein [Thermoplasma
           acidophilum]
           Length = 267
           
 Score = 80.0 bits (194), Expect = 3e-14
 Identities = 60/240 (25%), Positives = 118/240 (49%), Gaps = 17/240 (7%)

Query: 27  FLLGTLFEPMIYVLLFGPLM------GKLIGDLEVNGMRISYLAFMFPGVLTLVSINQGF 80
           +L+  L +P+ +++LFG         G  +     +G +  Y+ +M  G+LT+  +  G 
Sbjct: 21  YLIVGLLQPVFWIILFGSAFDIAKFGGPFVSSF-FDGAK-DYITYMIGGILTITGLFTGM 78

Query: 81  RGATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRAIIAMIVLSILTLIIAKDASI 140
                 I DR  G L+     P+ R+ +  ++I+++ +R I+ +++L  + LII     I
Sbjct: 79  FSGINIIWDRRLGILQRFLVSPIKRSSIVFSRIIASVVRIIVQVVILVAIALIIPDGLKI 138

Query: 141 TLTGFI--GSLLVNSLLVV--MLSSFMIYLLSKSQNPNLPLAISGIVILPMMFLSTVFYP 196
           + +  I    L++ ++L++  + SS    +  +       + I+ +V LP+MF S   +P
Sbjct: 139 SSSFTIEDAFLMIAAVLMISFIFSSIFSIIAIRMTRMETIMGITNLVNLPLMFASYALFP 198

Query: 197 ETVFESSKVLSILVSINPMTHASNLVR-SFIYG--THLQHSTMVVSLAYLLVLAFIGMLI 253
             +  S   LS +   NP++ ++  +R   IYG  T  Q ST V  + YL +L  + +L+
Sbjct: 199 PDLMVS--WLSTVAKYNPVSWSAESIRLLIIYGNLTGSQMSTFVSYMLYLFILTVVMILL 256


>pir||A71081 hypothetical protein PH0911 - Pyrococcus horikoshii
           >gi|3257324|dbj|BAA30007.1| (AP000004) 257aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 257
           
 Score = 79.2 bits (192), Expect = 5e-14
 Identities = 63/265 (23%), Positives = 121/265 (44%), Gaps = 22/265 (8%)

Query: 8   INSFKVAISRETKIGI-DLEFLLGTLFEPMIYVLLFG---------PLMGKLIGDLEVNG 57
           +N F   I RE K  I     ++G++  P+++++ FG         P+  ++ G ++   
Sbjct: 4   MNVFLTMIYRELKRFIRSPSRIIGSILNPLLWLIFFGKGWSGVFNFPMATRIFGGVD--- 60

Query: 58  MRISYLAFMFPGVLTLVSINQGFRGATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSAC 117
               Y+ ++ PGV+ +   +  F    T I D+ +G ++ +   P  R    + +I    
Sbjct: 61  ----YMTYLVPGVVVMTVFDMSFLQGLTIIWDKQFGFMKEILVAPASRVESILGRITGGA 116

Query: 118 IRAIIAMIVLSILTLIIAKDASITLTGFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPL 177
           I A+I   ++  L+ I+A   ++ ++G I +L++   + V ++   + +  K  +     
Sbjct: 117 IVAMIQGFIMVALSFIVA---NLKVSGVIPTLILAFFVGVAIAGLGVAVALKMSSMEGFQ 173

Query: 178 AISGIVILPMMFLSTVFYPETVFESSKVLSILVSINPMTHASNLVRSFIYGTHLQHSTMV 237
            I  +++LPMMFLS  FYP  V      +  L  INP+T+A +  R ++ G       M 
Sbjct: 174 IIVMMLMLPMMFLSGAFYP--VRTMPNWMQWLAKINPLTYAVDGARYYLAGVTPTFGIMQ 231

Query: 238 VSLAYLLVLAFIGMLIGLRGFKAAL 262
             +  +L+        GL   KA L
Sbjct: 232 DWIVLILLALVFAGFAGLEFRKAYL 256


>pir||S32909 hypothetical protein 5 - Streptomyces antibioticus
           >gi|153383|gb|AAA26794.1| (L06249) membrane protein
           [Streptomyces antibioticus]
           Length = 273
           
 Score = 73.7 bits (178), Expect = 2e-12
 Identities = 55/227 (24%), Positives = 109/227 (47%), Gaps = 7/227 (3%)

Query: 24  DLEFLLGTLFEPMIYVLLFGPLMGKLIGDLEVNGMRISYLAFMFPGVLTLVSINQGFRGA 83
           D E +   +  P+++ LLF  + G  IG   + G +  Y+ ++ PG+L ++ +N      
Sbjct: 40  DPESMFDAILFPVVFTLLFVYVFGGSIGK-SLGGGQEQYVQYVVPGLLAMMGMNMAQGVG 98

Query: 84  TTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRAIIAMIVLSILTLIIAKDASITLT 143
           T F QD   G ++   +LP+ R  +  AKI    +R + A  VL ++ L++  +  + L 
Sbjct: 99  TGFNQDFNSGVMDRFRSLPIGRGSVLFAKIAVELMRMLFATAVLLVVALLVGYEVGM-LE 157

Query: 144 GFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAISGIVILPMMFLSTVFYPETVFESS 203
             +GS+ +++L    L    + L    +N     A+  +V++P+ F S++F P       
Sbjct: 158 RLLGSVALSALFGSALMWVFLTLGVVMKNAQSVQAMGFLVLMPLQFGSSIFAPTQSMPG- 216

Query: 204 KVLSILVSINPMTHASNLVRSFIYGTHLQHS---TMVVSLAYLLVLA 247
             L      NP++  ++  R  + G  + H+   T++ S+   +V+A
Sbjct: 217 -WLQAFTDYNPLSALADCARGLMEGGPVAHALWVTVIWSVGLTVVMA 262


>pir||T50567 probable ABC-type transport protein, transmembrane component
           [imported] - Streptomyces coelicolor
           >gi|6469243|emb|CAB61704.1| (AL133220) probable
           ABC-transporter, transmembrane component. [Streptomyces
           coelicolor A3(2)]
           Length = 274
           
 Score = 73.4 bits (177), Expect = 3e-12
 Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 11/239 (4%)

Query: 24  DLEFLLGTLFEPMIYVLLFGPLMGKLIGDLEVNGMRISYLAFMFPGVLTLVSINQGFRGA 83
           D E +   +  P+++ LLF  + G  IG   + G + +Y+ ++ PG++ ++ +N      
Sbjct: 41  DPESMFDAILFPIVFTLLFVYVFGGSIGQ-SLGGGQQAYVQYVIPGLMAMMGMNMAQGVG 99

Query: 84  TTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRAIIAMIVLSILTLIIAKDASITLT 143
           T F QD   G ++   +LP+ R  +  AKI    +R + A  VL ++ +++  D    +T
Sbjct: 100 TGFNQDFNSGVMDRFRSLPIGRGSVLFAKIAVELLRMLFATAVLMVVAVLVGFD----IT 155

Query: 144 GFIGSLLVNSLLVVMLSSFMIYLLSKS---QNPNLPLAISGIVILPMMFLSTVFYPETVF 200
            + G L    L  V  S+ M   L+     +N     A+  +V++P+ F S++F P    
Sbjct: 156 DWAGLLASVGLSAVFGSALMWVFLTLGVVMKNAQSVQAMGFLVLMPLQFGSSIFAPTDSM 215

Query: 201 ESSKVLSILVSINPMTHASNLVRSFIYGTHLQHSTMVVSLAYLLVLAFIGMLIGLRGFK 259
                L      NP++  ++  R  + G  + H  + V+LA+   L  +   I +  F+
Sbjct: 216 PG--WLQSFTDYNPLSSLADTARGLMLGGPVAHD-LWVTLAWSAALTAVMAPIAIHKFR 271


>pir||S74047 hypothetical protein c0111 - Sulfolobus solfataricus
           >gi|1707741|emb|CAA69461.1| (Y08256) orf c01011
           [Sulfolobus solfataricus]
           Length = 192
           
 Score = 72.6 bits (175), Expect = 5e-12
 Identities = 52/188 (27%), Positives = 93/188 (48%), Gaps = 7/188 (3%)

Query: 70  VLTLVSINQGFRGATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRAII-AMIVLS 128
           +L+ + +    +   + + DR  G L+ + T PVPR  + + K+LSA IR+++ A IVL 
Sbjct: 1   MLSFIVLFTSMQSGMSIVWDRRLGVLDRILTTPVPRGNIIIGKVLSAVIRSLVQATIVLV 60

Query: 129 ILTLI-IAKDASITLTGFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAISGIVILPM 187
           +  L+ +     I    F+G      L+   LSS  + L  ++ +    +AI  ++ LP+
Sbjct: 61  VAVLLGMTFAPEINPLDFLGVYAALFLMSFGLSSLFLMLALRATSWESQMAIMNLLNLPL 120

Query: 188 MFLSTVFYPETVFESSKVLSILVSINPMTHASNLVRSFIYGTHLQHSTMVVSLAYLLVLA 247
           +F S  FYP  V      L  +  INP+T+++ + R  + G     + + +   YL + A
Sbjct: 121 LFTSNAFYP--VKSMPYWLKPVAYINPLTYSNGVARGMLLGI---STNLAIDFLYLGLFA 175

Query: 248 FIGMLIGL 255
            I   IG+
Sbjct: 176 IILSTIGI 183


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.144    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79227167
Number of Sequences: 2977
Number of extensions: 2976386
Number of successful extensions: 15696
Number of sequences better than 1.0e-10: 11
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 15677
Number of HSP's gapped (non-prelim): 11
length of query: 264
length of database: 189,106,746
effective HSP length: 55
effective length of query: 209
effective length of database: 156,189,961
effective search space: 32643701849
effective search space used: 32643701849
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 164 (68.3 bits)