BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1705 (PAB1705) DE:Hypothetical protein
         (155 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75075 hypothetical protein PAB1705 - Pyrococcus abyssi (st...   312  1e-84
pir||E71068 hypothetical protein PH1243 - Pyrococcus horikoshii ...   276  1e-73

>pir||H75075 hypothetical protein PAB1705 - Pyrococcus abyssi (strain Orsay)
           >gi|5458421|emb|CAB49909.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 155
           
 Score =  312 bits (792), Expect = 1e-84
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MKVEGLVSSLRNAETIEELFSILKKKGAPVIDFEGMKKLIIIEGDFEGKQFYTEINGMKA 60
           MKVEGLVSSLRNAETIEELFSILKKKGAPVIDFEGMKKLIIIEGDFEGKQFYTEINGMKA
Sbjct: 1   MKVEGLVSSLRNAETIEELFSILKKKGAPVIDFEGMKKLIIIEGDFEGKQFYTEINGMKA 60

Query: 61  NLVLGDAMLNSANVPFKCKKPFTGGNLILVDFDNVESEEFVLAYKNETGVYFHVKNGEPR 120
           NLVLGDAMLNSANVPFKCKKPFTGGNLILVDFDNVESEEFVLAYKNETGVYFHVKNGEPR
Sbjct: 61  NLVLGDAMLNSANVPFKCKKPFTGGNLILVDFDNVESEEFVLAYKNETGVYFHVKNGEPR 120

Query: 121 EISREEYEELKDKMPEFKVKGLSEEEAESMGAFFG 155
           EISREEYEELKDKMPEFKVKGLSEEEAESMGAFFG
Sbjct: 121 EISREEYEELKDKMPEFKVKGLSEEEAESMGAFFG 155


>pir||E71068 hypothetical protein PH1243 - Pyrococcus horikoshii
           >gi|3257660|dbj|BAA30343.1| (AP000005) 155aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 155
           
 Score =  276 bits (698), Expect = 1e-73
 Identities = 133/155 (85%), Positives = 146/155 (93%)

Query: 1   MKVEGLVSSLRNAETIEELFSILKKKGAPVIDFEGMKKLIIIEGDFEGKQFYTEINGMKA 60
           MKVEGLVSSLRNAETIE+LFSILKKKGAP+ID EG+KKLII+EGDFEGKQFYTEINGMKA
Sbjct: 1   MKVEGLVSSLRNAETIEDLFSILKKKGAPIIDLEGIKKLIIVEGDFEGKQFYTEINGMKA 60

Query: 61  NLVLGDAMLNSANVPFKCKKPFTGGNLILVDFDNVESEEFVLAYKNETGVYFHVKNGEPR 120
           NL LGDAMLNSANVPFKCKKPFTGGNLILVD  N+ES+EFVLAY+++ GVYFHVK GE +
Sbjct: 61  NLALGDAMLNSANVPFKCKKPFTGGNLILVDLTNIESKEFVLAYRDDVGVYFHVKEGEAK 120

Query: 121 EISREEYEELKDKMPEFKVKGLSEEEAESMGAFFG 155
           EIS+EEY+ LK+KMPEF VKGLSEEEAESMGAFFG
Sbjct: 121 EISKEEYDNLKNKMPEFIVKGLSEEEAESMGAFFG 155


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.137    0.378 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58307941
Number of Sequences: 2977
Number of extensions: 2512975
Number of successful extensions: 5716
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5714
Number of HSP's gapped (non-prelim): 2
length of query: 155
length of database: 189,106,746
effective HSP length: 56
effective length of query: 99
effective length of database: 155,591,474
effective search space: 15403555926
effective search space used: 15403555926
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 161 (67.1 bits)