BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1706 (PAB1706) DE:Hypothetical protein
(233 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75075 hypothetical protein PAB1706 - Pyrococcus abyssi (st... 474 e-133
pir||F71068 hypothetical protein PH1244 - Pyrococcus horikoshii ... 426 e-118
pir||G69080 conserved hypothetical protein MTH1600 - Methanobact... 168 4e-41
pir||H64503 conserved hypothetical protein MJ1634 - Methanococcu... 160 2e-38
gb|AAK42555.1| Conserved hypothetical protein [Sulfolobus solfat... 127 1e-28
gi|11498484 conserved hypothetical protein [Archaeoglobus fulgid... 113 2e-24
emb|CAC12551.1| (AL445067) conserved hypothetical protein [Therm... 106 3e-22
gb|AAG19678.1| (AE005055) Vng1343c [Halobacterium sp. NRC-1] 93 2e-18
>pir||G75075 hypothetical protein PAB1706 - Pyrococcus abyssi (strain Orsay)
>gi|5458420|emb|CAB49908.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 233
Score = 474 bits (1206), Expect = e-133
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60
MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA
Sbjct: 1 MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60
Query: 61 GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMVV 120
GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMVV
Sbjct: 61 GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMVV 120
Query: 121 HAHGDNIDKLPLVVEFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGF 180
HAHGDNIDKLPLVVEFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGF
Sbjct: 121 HAHGDNIDKLPLVVEFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGF 180
Query: 181 DFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWLAKNGKARIFLGSQEL 233
DFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWLAKNGKARIFLGSQEL
Sbjct: 181 DFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWLAKNGKARIFLGSQEL 233
>pir||F71068 hypothetical protein PH1244 - Pyrococcus horikoshii
>gi|3257661|dbj|BAA30344.1| (AP000005) 266aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 266
Score = 426 bits (1084), Expect = e-118
Identities = 197/233 (84%), Positives = 224/233 (95%)
Query: 1 MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60
MKWEEWKPFYERIV+ MGYS+E+DEKAAE+LR+ILIENDNYIIKEE+NS+IME+VY+FGA
Sbjct: 34 MKWEEWKPFYERIVRVMGYSMEDDEKAAEVLRSILIENDNYIIKEEINSIIMERVYIFGA 93
Query: 61 GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMVV 120
GPNLE+EI+GR+FSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASK+++MVV
Sbjct: 94 GPNLEDEIRGRDFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKKAVMVV 153
Query: 121 HAHGDNIDKLPLVVEFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGF 180
HAHGDNIDKLP+V FP+VLGTCQTKPLDI+YNFGGFTDGDRA FLAEELGAKEI L+GF
Sbjct: 154 HAHGDNIDKLPIVTNFPLVLGTCQTKPLDIIYNFGGFTDGDRAAFLAEELGAKEIILLGF 213
Query: 181 DFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWLAKNGKARIFLGSQEL 233
DFSG+VGKWSKPWL HVEAWE KRKKL FA+ELI+WLAKNGKA+IFLG++++
Sbjct: 214 DFSGKVGKWSKPWLTKHVEAWEEKRKKLEFARELIKWLAKNGKAKIFLGNKKI 266
>pir||G69080 conserved hypothetical protein MTH1600 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622724|gb|AAB86073.1| (AE000919) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 232
Score = 168 bits (422), Expect = 4e-41
Identities = 100/234 (42%), Positives = 146/234 (61%), Gaps = 13/234 (5%)
Query: 1 MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60
M+ + W +Y RI+ + G+ DE++A L A L E+ ++ + V VFGA
Sbjct: 1 MEVQVWLRWYTRILDDFGFDRRADEESASYLDAFLREHG--CLRVDDIDVPSSDFIVFGA 58
Query: 61 GPNLEEEIKGREFSDG--TKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKR-SI 117
GP+L +K D T I+ADGAT+ALL+ ++PDI+VTDLDG++ D++EA+++ ++
Sbjct: 59 GPSLRSHLKRFRALDEPMTVISADGATTALLEEDVLPDIIVTDLDGKMEDIIEANRQGAV 118
Query: 118 MVVHAHGDNIDKL----PLVVEFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAK 173
+VVHAHG+N+ L PL+ ++GT Q+ P ++NFGGFTDGDRAVFLA LGA
Sbjct: 119 VVVHAHGNNLPALRRYLPLLQN---IIGTTQSIPHGCLHNFGGFTDGDRAVFLAAALGAG 175
Query: 174 EIFLIGFDFSGRVGKWSKPWLKDHV-EAWEVKRKKLMFAKELIEWLAKNGKARI 226
I L G DF V ++S+P + + A VKR KL +A LI+WL +NG RI
Sbjct: 176 RIVLAGMDFGEVVTRYSRPDMDSELGPADPVKRLKLEYASRLIDWLERNGDVRI 229
>pir||H64503 conserved hypothetical protein MJ1634 - Methanococcus jannaschii
>gi|1500534|gb|AAB99656.1| (U67604) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 241
Score = 160 bits (400), Expect = 2e-38
Identities = 100/232 (43%), Positives = 149/232 (64%), Gaps = 15/232 (6%)
Query: 1 MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIM-EKVYVFG 59
M +EW+ FY +I+++ G+ ++D ++A IL IL EN N I ++L +I +V++FG
Sbjct: 1 MDMKEWEIFYNKIMEDFGFDKDKDVESAVILNNIL-ENANTIPVDKLKDIIEGREVFIFG 59
Query: 60 AGPNLEEEI----KGREFS-DGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASK 114
AGP++++ I + RE + I ADGA A L+ IIPDI+V+DLDG + L E ++
Sbjct: 60 AGPSIKKHINILKELREINYKNPIIVADGACKAFLEENIIPDIIVSDLDGDLEALFECNR 119
Query: 115 R-SIMVVHAHGDNIDKLPLVV-EFPVVLGTCQT---KPLDI--VYNFGGFTDGDRAVFLA 167
+ SI+VVHAHGDNI+K+ V + V+G+CQ K L++ V NFGGFTDGDR FLA
Sbjct: 120 KGSIIVVHAHGDNIEKIKKYVPKLKNVVGSCQIPNYKELNLRNVINFGGFTDGDRCCFLA 179
Query: 168 EELGAKEIFLIGFDFSGRVGKWSKPWLKDHVEAW-EVKRKKLMFAKELIEWL 218
AK++ L G DF + K+S+P +K+ + E+K KKL +AK LI +L
Sbjct: 180 YHFKAKKLILGGMDFGIYITKYSRPNIKEDIAIGDEIKIKKLEYAKTLINYL 231
>gb|AAK42555.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 204
Score = 127 bits (316), Expect = 1e-28
Identities = 85/201 (42%), Positives = 116/201 (57%), Gaps = 12/201 (5%)
Query: 18 GYSVEEDEKAAEILRAILI-ENDNYIIKEELNSVIMEKVYVFGAGPNLEEEIKGREFSDG 76
G+ +D +A IL ++ E D +KE + ++ + GAGP L+ K + +
Sbjct: 7 GFKERDDYISASILNYLITKEYDEAELKELIKG---REIAIVGAGPQLD---KINKLKED 60
Query: 77 TKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMVVHAHGDNIDKLPLVVEF 136
IAADGA + L+ GI+PDI+VTDLDG L K I VV AHGDNI+ L V E
Sbjct: 61 VIIAADGAANYLVDIGIVPDIIVTDLDG----LQTFPKNPIYVVLAHGDNINLLHKVKEM 116
Query: 137 PVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGFDF-SGRVGKWSKPWLK 195
V+ Q P + +GGFTDGDRAV LA+ + A +I L DF SG VGK+SKP+ +
Sbjct: 117 DKVIPNSQVMPFGRLRLYGGFTDGDRAVVLAKYMKASKIRLYAMDFQSGIVGKFSKPYYQ 176
Query: 196 DHVEAWEVKRKKLMFAKELIE 216
+V A +KRKKL A+ +IE
Sbjct: 177 RNVPASMIKRKKLEIARMIIE 197
>gi|11498484 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483061|pir||F69359 conserved hypothetical protein
AF0878 - Archaeoglobus fulgidus
>gi|2649725|gb|AAB90362.1| (AE001043) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 197
Score = 113 bits (280), Expect = 2e-24
Identities = 79/214 (36%), Positives = 116/214 (53%), Gaps = 37/214 (17%)
Query: 10 YERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA---GPNLEE 66
YE+I+++ G+S EEDE+AA +++ + D + L + + V V G G ++ E
Sbjct: 4 YEQILRDFGFSREEDERAARLMKELA--GDRLLESSVLEFIRGKSVAVIGGAYEGESIRE 61
Query: 67 EIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRS-IMVVHAHGD 125
E+ A A+ K +P I VTD++ + L +R I+V+HAHGD
Sbjct: 62 EV------------VITAGKAVNKVNFVPHIHVTDMEEDEKILASLEERGCILVLHAHGD 109
Query: 126 NIDKLPLVVEFPVV---LGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGFDF 182
N++++ VV PVV +GT Q+ P D +YNFGGFTDGDRA LA++ GA+ I L GFDF
Sbjct: 110 NVERIKRVV--PVVQRFVGTTQSTPFDRIYNFGGFTDGDRAALLAKKFGARRIRLYGFDF 167
Query: 183 SGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIE 216
K P VK KKL +AK ++E
Sbjct: 168 E----KADNP----------VKLKKLKWAKFILE 187
>emb|CAC12551.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 220
Score = 106 bits (261), Expect = 3e-22
Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 22/224 (9%)
Query: 1 MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60
M W Y I + + + +A++L +I++ N + K EL YV G
Sbjct: 1 MDLPRWLAIYRSIADDFSF-----DPSADLLSSIILSN--LVGKPELPDRKGSTAYVIGN 53
Query: 61 GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLE-ASKRSIMV 119
GPN++E I+ S G I AD A SA PD++VTDLDG + + ASK + ++
Sbjct: 54 GPNIDEAIQS--ISSGYTIVADSAISAYFAVRGCPDMIVTDLDGDVDTIFSCASKGTSII 111
Query: 120 VHAHGDNIDKLPLVVEFPV---VLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIF 176
+HAHGDNI ++ + + ++GT Q P V NF GFTDGDR+ ++A +G ++I
Sbjct: 112 IHAHGDNIHRI-IGNGHRIRDDMIGTTQGIPYRNVANFFGFTDGDRSAYIASRMGFEKIV 170
Query: 177 LIGFDFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWLAK 220
L+ FDF V + SKP +K +KL +A+ +I LA+
Sbjct: 171 LVSFDFH-HVNR-SKPGNP------AIKARKLKWAQAIISMLAE 206
>gb|AAG19678.1| (AE005055) Vng1343c [Halobacterium sp. NRC-1]
Length = 225
Score = 93.2 bits (228), Expect = 2e-18
Identities = 73/229 (31%), Positives = 103/229 (44%), Gaps = 24/229 (10%)
Query: 1 MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60
M++++W+P Y+ + GY D +A ++L A D + + V + G
Sbjct: 1 MEYDDWQPVYDDVCAAFGYEQAADRRARDVLAAHAEPFDMARL-----DCTGQTVAIAGG 55
Query: 61 GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMV- 119
P L +E + +D AA A L GI D++VTDLD + + V
Sbjct: 56 APTLADEREVAAAADRV-FAASTAVDVLADAGIEVDLMVTDLDKNPETARRLTAQGTPVA 114
Query: 120 VHAHGDNIDKLPLVV---EFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIF 176
VHAHGDNI + V + VL T Q P V + GGFTDGDRA FLA+ GA +
Sbjct: 115 VHAHGDNIAAIREHVPTYDTTHVLATTQAAPTGPVVDHGGFTDGDRAAFLADHCGAAALR 174
Query: 177 LIGFDFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWL-AKNGKA 224
G W D E KR+KL +A L+ WL + G+A
Sbjct: 175 FPG-------------WAFDDHTVTEEKRRKLAWAARLLRWLETRRGEA 210
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.413
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92977224
Number of Sequences: 2977
Number of extensions: 3951520
Number of successful extensions: 9786
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9765
Number of HSP's gapped (non-prelim): 8
length of query: 233
length of database: 189,106,746
effective HSP length: 53
effective length of query: 180
effective length of database: 157,386,935
effective search space: 28329648300
effective search space used: 28329648300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)