BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1706 (PAB1706) DE:Hypothetical protein
         (233 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75075 hypothetical protein PAB1706 - Pyrococcus abyssi (st...   474  e-133
pir||F71068 hypothetical protein PH1244 - Pyrococcus horikoshii ...   426  e-118
pir||G69080 conserved hypothetical protein MTH1600 - Methanobact...   168  4e-41
pir||H64503 conserved hypothetical protein MJ1634 - Methanococcu...   160  2e-38
gb|AAK42555.1| Conserved hypothetical protein [Sulfolobus solfat...   127  1e-28
gi|11498484 conserved hypothetical protein [Archaeoglobus fulgid...   113  2e-24
emb|CAC12551.1| (AL445067) conserved hypothetical protein [Therm...   106  3e-22
gb|AAG19678.1| (AE005055) Vng1343c [Halobacterium sp. NRC-1]           93  2e-18

>pir||G75075 hypothetical protein PAB1706 - Pyrococcus abyssi (strain Orsay)
           >gi|5458420|emb|CAB49908.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 233
           
 Score =  474 bits (1206), Expect = e-133
 Identities = 233/233 (100%), Positives = 233/233 (100%)

Query: 1   MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60
           MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA
Sbjct: 1   MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60

Query: 61  GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMVV 120
           GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMVV
Sbjct: 61  GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMVV 120

Query: 121 HAHGDNIDKLPLVVEFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGF 180
           HAHGDNIDKLPLVVEFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGF
Sbjct: 121 HAHGDNIDKLPLVVEFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGF 180

Query: 181 DFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWLAKNGKARIFLGSQEL 233
           DFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWLAKNGKARIFLGSQEL
Sbjct: 181 DFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWLAKNGKARIFLGSQEL 233


>pir||F71068 hypothetical protein PH1244 - Pyrococcus horikoshii
           >gi|3257661|dbj|BAA30344.1| (AP000005) 266aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 266
           
 Score =  426 bits (1084), Expect = e-118
 Identities = 197/233 (84%), Positives = 224/233 (95%)

Query: 1   MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60
           MKWEEWKPFYERIV+ MGYS+E+DEKAAE+LR+ILIENDNYIIKEE+NS+IME+VY+FGA
Sbjct: 34  MKWEEWKPFYERIVRVMGYSMEDDEKAAEVLRSILIENDNYIIKEEINSIIMERVYIFGA 93

Query: 61  GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMVV 120
           GPNLE+EI+GR+FSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASK+++MVV
Sbjct: 94  GPNLEDEIRGRDFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKKAVMVV 153

Query: 121 HAHGDNIDKLPLVVEFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGF 180
           HAHGDNIDKLP+V  FP+VLGTCQTKPLDI+YNFGGFTDGDRA FLAEELGAKEI L+GF
Sbjct: 154 HAHGDNIDKLPIVTNFPLVLGTCQTKPLDIIYNFGGFTDGDRAAFLAEELGAKEIILLGF 213

Query: 181 DFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWLAKNGKARIFLGSQEL 233
           DFSG+VGKWSKPWL  HVEAWE KRKKL FA+ELI+WLAKNGKA+IFLG++++
Sbjct: 214 DFSGKVGKWSKPWLTKHVEAWEEKRKKLEFARELIKWLAKNGKAKIFLGNKKI 266


>pir||G69080 conserved hypothetical protein MTH1600 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622724|gb|AAB86073.1| (AE000919) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 232
           
 Score =  168 bits (422), Expect = 4e-41
 Identities = 100/234 (42%), Positives = 146/234 (61%), Gaps = 13/234 (5%)

Query: 1   MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60
           M+ + W  +Y RI+ + G+    DE++A  L A L E+    ++ +   V      VFGA
Sbjct: 1   MEVQVWLRWYTRILDDFGFDRRADEESASYLDAFLREHG--CLRVDDIDVPSSDFIVFGA 58

Query: 61  GPNLEEEIKGREFSDG--TKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKR-SI 117
           GP+L   +K     D   T I+ADGAT+ALL+  ++PDI+VTDLDG++ D++EA+++ ++
Sbjct: 59  GPSLRSHLKRFRALDEPMTVISADGATTALLEEDVLPDIIVTDLDGKMEDIIEANRQGAV 118

Query: 118 MVVHAHGDNIDKL----PLVVEFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAK 173
           +VVHAHG+N+  L    PL+     ++GT Q+ P   ++NFGGFTDGDRAVFLA  LGA 
Sbjct: 119 VVVHAHGNNLPALRRYLPLLQN---IIGTTQSIPHGCLHNFGGFTDGDRAVFLAAALGAG 175

Query: 174 EIFLIGFDFSGRVGKWSKPWLKDHV-EAWEVKRKKLMFAKELIEWLAKNGKARI 226
            I L G DF   V ++S+P +   +  A  VKR KL +A  LI+WL +NG  RI
Sbjct: 176 RIVLAGMDFGEVVTRYSRPDMDSELGPADPVKRLKLEYASRLIDWLERNGDVRI 229


>pir||H64503 conserved hypothetical protein MJ1634 - Methanococcus jannaschii
           >gi|1500534|gb|AAB99656.1| (U67604) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 241
           
 Score =  160 bits (400), Expect = 2e-38
 Identities = 100/232 (43%), Positives = 149/232 (64%), Gaps = 15/232 (6%)

Query: 1   MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIM-EKVYVFG 59
           M  +EW+ FY +I+++ G+  ++D ++A IL  IL EN N I  ++L  +I   +V++FG
Sbjct: 1   MDMKEWEIFYNKIMEDFGFDKDKDVESAVILNNIL-ENANTIPVDKLKDIIEGREVFIFG 59

Query: 60  AGPNLEEEI----KGREFS-DGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASK 114
           AGP++++ I    + RE +     I ADGA  A L+  IIPDI+V+DLDG +  L E ++
Sbjct: 60  AGPSIKKHINILKELREINYKNPIIVADGACKAFLEENIIPDIIVSDLDGDLEALFECNR 119

Query: 115 R-SIMVVHAHGDNIDKLPLVV-EFPVVLGTCQT---KPLDI--VYNFGGFTDGDRAVFLA 167
           + SI+VVHAHGDNI+K+   V +   V+G+CQ    K L++  V NFGGFTDGDR  FLA
Sbjct: 120 KGSIIVVHAHGDNIEKIKKYVPKLKNVVGSCQIPNYKELNLRNVINFGGFTDGDRCCFLA 179

Query: 168 EELGAKEIFLIGFDFSGRVGKWSKPWLKDHVEAW-EVKRKKLMFAKELIEWL 218
               AK++ L G DF   + K+S+P +K+ +    E+K KKL +AK LI +L
Sbjct: 180 YHFKAKKLILGGMDFGIYITKYSRPNIKEDIAIGDEIKIKKLEYAKTLINYL 231


>gb|AAK42555.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 204
           
 Score =  127 bits (316), Expect = 1e-28
 Identities = 85/201 (42%), Positives = 116/201 (57%), Gaps = 12/201 (5%)

Query: 18  GYSVEEDEKAAEILRAILI-ENDNYIIKEELNSVIMEKVYVFGAGPNLEEEIKGREFSDG 76
           G+   +D  +A IL  ++  E D   +KE +      ++ + GAGP L+   K  +  + 
Sbjct: 7   GFKERDDYISASILNYLITKEYDEAELKELIKG---REIAIVGAGPQLD---KINKLKED 60

Query: 77  TKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMVVHAHGDNIDKLPLVVEF 136
             IAADGA + L+  GI+PDI+VTDLDG    L    K  I VV AHGDNI+ L  V E 
Sbjct: 61  VIIAADGAANYLVDIGIVPDIIVTDLDG----LQTFPKNPIYVVLAHGDNINLLHKVKEM 116

Query: 137 PVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGFDF-SGRVGKWSKPWLK 195
             V+   Q  P   +  +GGFTDGDRAV LA+ + A +I L   DF SG VGK+SKP+ +
Sbjct: 117 DKVIPNSQVMPFGRLRLYGGFTDGDRAVVLAKYMKASKIRLYAMDFQSGIVGKFSKPYYQ 176

Query: 196 DHVEAWEVKRKKLMFAKELIE 216
            +V A  +KRKKL  A+ +IE
Sbjct: 177 RNVPASMIKRKKLEIARMIIE 197


>gi|11498484 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483061|pir||F69359 conserved hypothetical protein
           AF0878 - Archaeoglobus fulgidus
           >gi|2649725|gb|AAB90362.1| (AE001043) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 197
           
 Score =  113 bits (280), Expect = 2e-24
 Identities = 79/214 (36%), Positives = 116/214 (53%), Gaps = 37/214 (17%)

Query: 10  YERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA---GPNLEE 66
           YE+I+++ G+S EEDE+AA +++ +    D  +    L  +  + V V G    G ++ E
Sbjct: 4   YEQILRDFGFSREEDERAARLMKELA--GDRLLESSVLEFIRGKSVAVIGGAYEGESIRE 61

Query: 67  EIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRS-IMVVHAHGD 125
           E+               A  A+ K   +P I VTD++   + L    +R  I+V+HAHGD
Sbjct: 62  EV------------VITAGKAVNKVNFVPHIHVTDMEEDEKILASLEERGCILVLHAHGD 109

Query: 126 NIDKLPLVVEFPVV---LGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIFLIGFDF 182
           N++++  VV  PVV   +GT Q+ P D +YNFGGFTDGDRA  LA++ GA+ I L GFDF
Sbjct: 110 NVERIKRVV--PVVQRFVGTTQSTPFDRIYNFGGFTDGDRAALLAKKFGARRIRLYGFDF 167

Query: 183 SGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIE 216
                K   P          VK KKL +AK ++E
Sbjct: 168 E----KADNP----------VKLKKLKWAKFILE 187


>emb|CAC12551.1| (AL445067) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 220
           
 Score =  106 bits (261), Expect = 3e-22
 Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 22/224 (9%)

Query: 1   MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60
           M    W   Y  I  +  +     + +A++L +I++ N   + K EL        YV G 
Sbjct: 1   MDLPRWLAIYRSIADDFSF-----DPSADLLSSIILSN--LVGKPELPDRKGSTAYVIGN 53

Query: 61  GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLE-ASKRSIMV 119
           GPN++E I+    S G  I AD A SA       PD++VTDLDG +  +   ASK + ++
Sbjct: 54  GPNIDEAIQS--ISSGYTIVADSAISAYFAVRGCPDMIVTDLDGDVDTIFSCASKGTSII 111

Query: 120 VHAHGDNIDKLPLVVEFPV---VLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIF 176
           +HAHGDNI ++ +     +   ++GT Q  P   V NF GFTDGDR+ ++A  +G ++I 
Sbjct: 112 IHAHGDNIHRI-IGNGHRIRDDMIGTTQGIPYRNVANFFGFTDGDRSAYIASRMGFEKIV 170

Query: 177 LIGFDFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWLAK 220
           L+ FDF   V + SKP          +K +KL +A+ +I  LA+
Sbjct: 171 LVSFDFH-HVNR-SKPGNP------AIKARKLKWAQAIISMLAE 206


>gb|AAG19678.1| (AE005055) Vng1343c [Halobacterium sp. NRC-1]
           Length = 225
           
 Score = 93.2 bits (228), Expect = 2e-18
 Identities = 73/229 (31%), Positives = 103/229 (44%), Gaps = 24/229 (10%)

Query: 1   MKWEEWKPFYERIVKEMGYSVEEDEKAAEILRAILIENDNYIIKEELNSVIMEKVYVFGA 60
           M++++W+P Y+ +    GY    D +A ++L A     D   +         + V + G 
Sbjct: 1   MEYDDWQPVYDDVCAAFGYEQAADRRARDVLAAHAEPFDMARL-----DCTGQTVAIAGG 55

Query: 61  GPNLEEEIKGREFSDGTKIAADGATSALLKNGIIPDIVVTDLDGRIRDLLEASKRSIMV- 119
            P L +E +    +D    AA  A   L   GI  D++VTDLD         + +   V 
Sbjct: 56  APTLADEREVAAAADRV-FAASTAVDVLADAGIEVDLMVTDLDKNPETARRLTAQGTPVA 114

Query: 120 VHAHGDNIDKLPLVV---EFPVVLGTCQTKPLDIVYNFGGFTDGDRAVFLAEELGAKEIF 176
           VHAHGDNI  +   V   +   VL T Q  P   V + GGFTDGDRA FLA+  GA  + 
Sbjct: 115 VHAHGDNIAAIREHVPTYDTTHVLATTQAAPTGPVVDHGGFTDGDRAAFLADHCGAAALR 174

Query: 177 LIGFDFSGRVGKWSKPWLKDHVEAWEVKRKKLMFAKELIEWL-AKNGKA 224
             G             W  D     E KR+KL +A  L+ WL  + G+A
Sbjct: 175 FPG-------------WAFDDHTVTEEKRRKLAWAARLLRWLETRRGEA 210


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.140    0.413 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92977224
Number of Sequences: 2977
Number of extensions: 3951520
Number of successful extensions: 9786
Number of sequences better than 1.0e-10: 8
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9765
Number of HSP's gapped (non-prelim): 8
length of query: 233
length of database: 189,106,746
effective HSP length: 53
effective length of query: 180
effective length of database: 157,386,935
effective search space: 28329648300
effective search space used: 28329648300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)