BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1708 (PAB1708) DE:Hypothetical protein
(196 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75075 hypothetical protein PAB1708 - Pyrococcus abyssi (st... 394 e-109
pir||A71131 hypothetical protein PH0814 - Pyrococcus horikoshii ... 282 2e-75
gi|11498995 conserved hypothetical protein [Archaeoglobus fulgid... 78 9e-14
emb|CAC12023.1| (AL445065) conserved hypothetical protein [Therm... 75 8e-13
gb|AAK41803.1| Coenzyme F390 synthetase [Sulfolobus solfataricus] 68 6e-11
>pir||D75075 hypothetical protein PAB1708 - Pyrococcus abyssi (strain Orsay)
>gi|5458417|emb|CAB49905.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 196
Score = 394 bits (1001), Expect = e-109
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MFSHFIKRFERSMLGLSNAPHRGGLVLANGFFFMQVHKDYSGDYKRDCLEFEKKHDLDNF 60
MFSHFIKRFERSMLGLSNAPHRGGLVLANGFFFMQVHKDYSGDYKRDCLEFEKKHDLDNF
Sbjct: 1 MFSHFIKRFERSMLGLSNAPHRGGLVLANGFFFMQVHKDYSGDYKRDCLEFEKKHDLDNF 60
Query: 61 VGFMTAVDVSKVLAVVKVKRVEAYVTAGITNPAIAGDEPPPLEPGTINIALIIKEGLTVG 120
VGFMTAVDVSKVLAVVKVKRVEAYVTAGITNPAIAGDEPPPLEPGTINIALIIKEGLTVG
Sbjct: 61 VGFMTAVDVSKVLAVVKVKRVEAYVTAGITNPAIAGDEPPPLEPGTINIALIIKEGLTVG 120
Query: 121 ALANAIMTATEAKTYTLLTLGYKATGTTSDGIGVFALPGDIEWAGTATEVGISIGRAVRE 180
ALANAIMTATEAKTYTLLTLGYKATGTTSDGIGVFALPGDIEWAGTATEVGISIGRAVRE
Sbjct: 121 ALANAIMTATEAKTYTLLTLGYKATGTTSDGIGVFALPGDIEWAGTATEVGISIGRAVRE 180
Query: 181 ALKESIKKWQSSSNRL 196
ALKESIKKWQSSSNRL
Sbjct: 181 ALKESIKKWQSSSNRL 196
>pir||A71131 hypothetical protein PH0814 - Pyrococcus horikoshii
>gi|3257224|dbj|BAA29907.1| (AP000003) 199aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 199
Score = 282 bits (714), Expect = 2e-75
Identities = 135/190 (71%), Positives = 161/190 (84%)
Query: 5 FIKRFERSMLGLSNAPHRGGLVLANGFFFMQVHKDYSGDYKRDCLEFEKKHDLDNFVGFM 64
F++ F++ ++ LSNAPHRGGL A GFFFM+V KDYSGDYK+DCLEFE+ L NFVGFM
Sbjct: 7 FVRVFDKELIALSNAPHRGGLTRARGFFFMKVDKDYSGDYKKDCLEFERNMGLKNFVGFM 66
Query: 65 TAVDVSKVLAVVKVKRVEAYVTAGITNPAIAGDEPPPLEPGTINIALIIKEGLTVGALAN 124
TAVDV KVL++ KV RVEAYVTAGI+NPAIAGD P + GTINIAL+I +GLTVGA+ N
Sbjct: 67 TAVDVGKVLSIKKVWRVEAYVTAGISNPAIAGDYPDKWKMGTINIALVIDKGLTVGAMVN 126
Query: 125 AIMTATEAKTYTLLTLGYKATGTTSDGIGVFALPGDIEWAGTATEVGISIGRAVREALKE 184
A+MTATEAKTYTLL LGY ATGTTSDGIG+FA G++EW+GTAT++GISIG+AVR AL+E
Sbjct: 127 AVMTATEAKTYTLLRLGYNATGTTSDGIGIFAREGEVEWSGTATKLGISIGKAVRSALEE 186
Query: 185 SIKKWQSSSN 194
SIKKW+ N
Sbjct: 187 SIKKWEIIKN 196
>gi|11498995 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483121|pir||G69424 conserved hypothetical protein
AF1400 - Archaeoglobus fulgidus
>gi|2649169|gb|AAB89843.1| (AE001007) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 188
Score = 77.6 bits (188), Expect = 9e-14
Identities = 49/137 (35%), Positives = 74/137 (53%), Gaps = 11/137 (8%)
Query: 55 HDLDNFVGFMTAVDVSKVLAVVKVKRVEAYVTAGITNPAIAGDEPPPLEPGTINIALIIK 114
+ L ++ G +T+V + K L+V V + TAG+ NP GTINI + +
Sbjct: 61 YGLKSYFGLLTSVPIEK-LSVKGCGEVTVFATAGVMNPNE--------RVGTINIIAVFE 111
Query: 115 EGLTVGALANAIMTATEAKTYTLLTLGYKATGTTSDGIGVFALP--GDIEWAGTATEVGI 172
++ A+ NAI+TATEAKT LL G+ TGT +D + V G + G A+EVG
Sbjct: 112 CRMSRAAMLNAIITATEAKTKALLEEGHNFTGTNTDAVVVLCTQKGGYHRYCGPASEVGQ 171
Query: 173 SIGRAVREALKESIKKW 189
+ R EA+K+S+ +W
Sbjct: 172 KLWRCAGEAVKDSLARW 188
>emb|CAC12023.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 202
Score = 74.5 bits (180), Expect = 8e-13
Identities = 55/198 (27%), Positives = 99/198 (49%), Gaps = 16/198 (8%)
Query: 4 HFIKRFERSMLGLSNAPHRGGLVLANGFFFMQVHKDYSGDYKRDCLEFEKKHDL--DNFV 61
+++ F+ +S+AP GG L + + V +YS + + + F K+ +L ++ V
Sbjct: 7 YYVIEFQHKAWTMSSAPFNGGCGLRSTYINRHVDSNYSHEVRTEVESFLKRQNLATEDTV 66
Query: 62 GFMTAVDVSKVLAV---VKVKRVEAYVTAGITNPAIAGDEPPPLEPGTINIALIIKEGLT 118
+TA DVS+ + V+ ++ ++TAG N G+ +PGTINIA++ L+
Sbjct: 67 VTLTAADVSRYVHASKHVEGWHIDIFLTAGFDNAISIGNRFG--KPGTINIAVVTDMPLS 124
Query: 119 VGALANAIMTATEAKTYTL-------LTLGYKATGTTSDGIGVFAL--PGDIEWAGTATE 169
A+ N + + EAK+ + + G A GT++D + +F + G+I++AG TE
Sbjct: 125 EAAMVNMMQSMVEAKSQFMNDYCIKDIRTGKPAPGTSTDTVSLFVVNSEGNIDYAGRLTE 184
Query: 170 VGISIGRAVREALKESIK 187
G V AL S +
Sbjct: 185 AGYYTSMMVYNALALSYR 202
>gb|AAK41803.1| Coenzyme F390 synthetase [Sulfolobus solfataricus]
Length = 180
Score = 68.3 bits (164), Expect = 6e-11
Identities = 36/83 (43%), Positives = 48/83 (57%)
Query: 106 TINIALIIKEGLTVGALANAIMTATEAKTYTLLTLGYKATGTTSDGIGVFALPGDIEWAG 165
TINI + + +GL + L + I T TEAK L LGYK TGT SD I V +LPG+ + G
Sbjct: 95 TINIGVFVDKGLNINGLVDLIRTVTEAKAGALRDLGYKFTGTVSDAIAVGSLPGNEYFIG 154
Query: 166 TATEVGISIGRAVREALKESIKK 188
TE+G I +R + E + K
Sbjct: 155 PGTELGKKIAYDIRNTIVELLFK 177
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70494316
Number of Sequences: 2977
Number of extensions: 2723831
Number of successful extensions: 6730
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6724
Number of HSP's gapped (non-prelim): 5
length of query: 196
length of database: 189,106,746
effective HSP length: 55
effective length of query: 141
effective length of database: 156,189,961
effective search space: 22022784501
effective search space used: 22022784501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)