BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1709 (PAB1709) DE:Hypothetical protein
(451 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75075 hypothetical protein PAB1709 - Pyrococcus abyssi (st... 908 0.0
gi|11497787 A. fulgidus predicted coding region AF0170 [Archaeog... 508 e-143
pir||F72307 conserved hypothetical protein - Thermotoga maritima... 282 5e-75
pir||D72307 conserved hypothetical protein - Thermotoga maritima... 202 8e-51
>pir||C75075 hypothetical protein PAB1709 - Pyrococcus abyssi (strain Orsay)
>gi|5458416|emb|CAB49904.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 451
Score = 908 bits (2322), Expect = 0.0
Identities = 451/451 (100%), Positives = 451/451 (100%)
Query: 1 MFINIQYDTCHEVIEMTELLRSEKKKEKLKSLLLKIHEGEDINKLKEEFKAILSSISPLE 60
MFINIQYDTCHEVIEMTELLRSEKKKEKLKSLLLKIHEGEDINKLKEEFKAILSSISPLE
Sbjct: 1 MFINIQYDTCHEVIEMTELLRSEKKKEKLKSLLLKIHEGEDINKLKEEFKAILSSISPLE 60
Query: 61 IPIIEQELVKEGIPARDIAKMCDLHVELFRGAISGVGEEEEKDIPEGHPLRTLFLENKEI 120
IPIIEQELVKEGIPARDIAKMCDLHVELFRGAISGVGEEEEKDIPEGHPLRTLFLENKEI
Sbjct: 61 IPIIEQELVKEGIPARDIAKMCDLHVELFRGAISGVGEEEEKDIPEGHPLRTLFLENKEI 120
Query: 121 LKDAEMLSLYARTLANTKDEKAREEIIKVLEDLVNTLRKVGFTHYTREEMLIFPYIERRG 180
LKDAEMLSLYARTLANTKDEKAREEIIKVLEDLVNTLRKVGFTHYTREEMLIFPYIERRG
Sbjct: 121 LKDAEMLSLYARTLANTKDEKAREEIIKVLEDLVNTLRKVGFTHYTREEMLIFPYIERRG 180
Query: 181 LNAVATVLWTKHDEIRYMLKRLVKLLRDGNLEKFVDEAVKTANALSDMVFRENNILYPTL 240
LNAVATVLWTKHDEIRYMLKRLVKLLRDGNLEKFVDEAVKTANALSDMVFRENNILYPTL
Sbjct: 181 LNAVATVLWTKHDEIRYMLKRLVKLLRDGNLEKFVDEAVKTANALSDMVFRENNILYPTL 240
Query: 241 KALLDEGEWKAIRMQEEEIGFYKVNPPSWDPGVEPIHPWELEEGLSAEQILSLPKEVQRA 300
KALLDEGEWKAIRMQEEEIGFYKVNPPSWDPGVEPIHPWELEEGLSAEQILSLPKEVQRA
Sbjct: 241 KALLDEGEWKAIRMQEEEIGFYKVNPPSWDPGVEPIHPWELEEGLSAEQILSLPKEVQRA 300
Query: 301 IKGKPLSFDSTKLKREGDIDLGTGYLSVEELKAIFKALPIDITFVDKDDRVRFFSPGERI 360
IKGKPLSFDSTKLKREGDIDLGTGYLSVEELKAIFKALPIDITFVDKDDRVRFFSPGERI
Sbjct: 301 IKGKPLSFDSTKLKREGDIDLGTGYLSVEELKAIFKALPIDITFVDKDDRVRFFSPGERI 360
Query: 361 FTRTLSVLGRPVQLCHPPKSVHIVNKILKAFKEGRKKEATFWIRMGDKYVYIKYVPVFNE 420
FTRTLSVLGRPVQLCHPPKSVHIVNKILKAFKEGRKKEATFWIRMGDKYVYIKYVPVFNE
Sbjct: 361 FTRTLSVLGRPVQLCHPPKSVHIVNKILKAFKEGRKKEATFWIRMGDKYVYIKYVPVFNE 420
Query: 421 KGEYLGTLEITMDIAPYKKIEGEKRLLDWMD 451
KGEYLGTLEITMDIAPYKKIEGEKRLLDWMD
Sbjct: 421 KGEYLGTLEITMDIAPYKKIEGEKRLLDWMD 451
>gi|11497787 A. fulgidus predicted coding region AF0170 [Archaeoglobus fulgidus]
>gi|7483377|pir||B69271 hypothetical protein AF0170 -
Archaeoglobus fulgidus >gi|2650478|gb|AAB91065.1|
(AE001094) A. fulgidus predicted coding region AF0170
[Archaeoglobus fulgidus]
Length = 434
Score = 508 bits (1294), Expect = e-143
Identities = 253/434 (58%), Positives = 328/434 (75%), Gaps = 14/434 (3%)
Query: 23 EKKKEKLKSLLLKIHEGEDINKLKEEFKAILSSISPLEIPIIEQELVKEGIPARDIAKMC 82
E KKE LKSLL +IHEG D+++LKE+FK +L+SISPLEIP+IEQELVKEGI R+IAKMC
Sbjct: 7 EDKKELLKSLLRQIHEGRDVSELKEQFKDVLASISPLEIPLIEQELVKEGISTREIAKMC 66
Query: 83 DLHVELFRGAISGVGEEEEKDIPEGHPLRTLFLENKEILKDAEMLSLYARTLANTKDEKA 142
D+HVELFR ++ G E DIPEGHPL TLF+EN+EI+KDAEML+L LANT + +
Sbjct: 67 DIHVELFRESVEGAFSVE--DIPEGHPLHTLFMENREIVKDAEMLAL----LANTLEREM 120
Query: 143 REEIIKVLEDLVNTLRKVGFTHYTREEMLIFPYIERRGLNAVATVLWTKHDEIRYMLKRL 202
+ EI++ +E +V L KVG THY REEMLIFPYIERRG+ A+ VLW KHDEIR L+ L
Sbjct: 121 KGEILEEMESVVAELIKVGHTHYNREEMLIFPYIERRGITAIPNVLWFKHDEIRAALRVL 180
Query: 203 VKLLR-------DGNLEKFVDEAVKTANALSDMVFRENNILYPTLKALLDEGEWKAIRMQ 255
+LL + ++++ V++A + ++A+ DMVFRENNI YPTLK LL EGEW+AIR Q
Sbjct: 181 HRLLTTDTGERWEEHIKRVVEKAREVSSAMLDMVFRENNIFYPTLKVLLSEGEWRAIREQ 240
Query: 256 EEEIGFYKVNPPSWDPGVEPIHPWELEEGLSAEQILSLPKEVQRAIKGKPLSFDSTKLKR 315
EE IG+YK+ P W +P+HP+E++ ++AEQ++SLP+EVQ +KG+ L DS ++ R
Sbjct: 241 EEIIGYYKLKPAEWKSDAKPVHPYEIDTTITAEQLISLPEEVQNLLKGQLLKPDSYEVVR 300
Query: 316 EGDIDLGTGYLSVEELKAIFKALPIDITFVDKDDRVRFFSPGERIFTRTLSVLGRPVQLC 375
E D+ L GYLS E+ AIFKALP DITFVD +DRVRFFS +RIF RT SV+GR V LC
Sbjct: 301 EDDLRLDEGYLSQREINAIFKALPFDITFVDSNDRVRFFSGSDRIFARTPSVIGRRVHLC 360
Query: 376 HPPKSVHIVNKILKAFKEGRKKEATFWIRMGDKYVYIKYVPVFNEKGEYLGTLEITMDIA 435
HPP+SVHIV+KILKAF+ G + A FWI MG + ++I+Y V ++GEYLGT+E+ D+
Sbjct: 361 HPPRSVHIVDKILKAFRNGERDFAEFWINMGGRIIHIRYFAV-RDEGEYLGTVEVVQDVT 419
Query: 436 PYKKIEGEKRLLDW 449
K++EGEKRLL W
Sbjct: 420 EIKRLEGEKRLLGW 433
>pir||F72307 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981548|gb|AAD36086.1|AE001762_13 (AE001762)
conserved hypothetical protein [Thermotoga maritima]
Length = 287
Score = 282 bits (714), Expect = 5e-75
Identities = 145/259 (55%), Positives = 190/259 (72%), Gaps = 5/259 (1%)
Query: 24 KKKEKLKSLLLKIHEGEDINKLKEEFKAILSSISPLEIPIIEQELVKEG-IPARDIAKMC 82
+K E K +L K+H+GED+ LK++F +LS I P EIP+IEQEL+K G I RDI KMC
Sbjct: 4 EKVELFKEVLKKLHKGEDVESLKKQFGELLSQIPPFEIPVIEQELLKSGEIDVRDIIKMC 63
Query: 83 DLHVELFRGAISGVGEEEEKDIPEGHPLRTLFLENKEILKDAEMLSLYARTLANT-KDEK 141
DLHVE FRGA+S G E EK +P GHPLRTL+ ENK+ILKDAE LSL A ++ + KD+
Sbjct: 64 DLHVEFFRGAVSEAGREIEK-LPNGHPLRTLYEENKQILKDAEALSLLASSMFSLPKDDP 122
Query: 142 AREEIIKVLEDLVNTLRKVGFTHYTREEMLIFPYIERRGLNAVATVLWTKHDEIRYMLKR 201
R++ + L V+ L ++G THYTREEMLIFPYIERRG+ AV TVLW+KHDE R ++
Sbjct: 123 RRKQFYEKLVQHVSELHRIGLTHYTREEMLIFPYIERRGITAVPTVLWSKHDETRLKIRL 182
Query: 202 LVKLL-RDGNLEKFVDEAVKTANALSDMVFRENNILYPTLKALLDEGEWKAIRMQEEEIG 260
L+ LL ++ + E+ +EA++ + LSDMVFRENNILYPTLK LL EGEWKAI+M E++IG
Sbjct: 183 LLNLLKKEESDERLKEEALELSRMLSDMVFRENNILYPTLKVLLTEGEWKAIKMLEKDIG 242
Query: 261 FYKVN-PPSWDPGVEPIHP 278
+YK+ W+ +P+ P
Sbjct: 243 YYKIEVTEEWETPEKPLLP 261
>pir||D72307 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981546|gb|AAD36084.1|AE001762_11 (AE001762)
conserved hypothetical protein [Thermotoga maritima]
Length = 184
Score = 202 bits (508), Expect = 8e-51
Identities = 100/170 (58%), Positives = 123/170 (71%), Gaps = 1/170 (0%)
Query: 280 ELEEGLSAEQILSLPKEVQRAIKGKPLSFDSTKLKREGDIDLGTGYLSVEELKAIFKALP 339
E++ +S E LP E++R + G L R+ DI + +GYLS+EEL AIFK LP
Sbjct: 14 EIDPVVSPETYEKLPDEIKR-VAGMLTPDTEYSLVRDNDIKIESGYLSLEELNAIFKTLP 72
Query: 340 IDITFVDKDDRVRFFSPGERIFTRTLSVLGRPVQLCHPPKSVHIVNKILKAFKEGRKKEA 399
DITFVDK RVRFFS G RIF R +VLGRPVQ CHPP+SVHIVNKILKAFKEGRK+ A
Sbjct: 73 FDITFVDKHGRVRFFSGGHRIFHRAPTVLGRPVQFCHPPRSVHIVNKILKAFKEGRKEPA 132
Query: 400 TFWIRMGDKYVYIKYVPVFNEKGEYLGTLEITMDIAPYKKIEGEKRLLDW 449
FWI MGD+ ++I+Y V +++G YLGTLE+ DI K++EGEKRLLDW
Sbjct: 133 EFWINMGDRKIHIRYFQVLDKEGNYLGTLEVVQDITRIKELEGEKRLLDW 182
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167208668
Number of Sequences: 2977
Number of extensions: 7361392
Number of successful extensions: 22536
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22524
Number of HSP's gapped (non-prelim): 4
length of query: 451
length of database: 189,106,746
effective HSP length: 57
effective length of query: 394
effective length of database: 154,992,987
effective search space: 61067236878
effective search space used: 61067236878
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)