BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1713 (PAB1713) DE:Hypothetical protein
(225 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75074 hypothetical protein PAB1713 - Pyrococcus abyssi (st... 463 e-129
pir||F71090 hypothetical protein PH0987 - Pyrococcus horikoshii ... 434 e-121
sp|P42967|YCSJ_BACSU HYPOTHETICAL 63.8 KD PROTEIN IN SIPU-PBPC I... 207 1e-52
dbj|BAB05536.1| (AP001513) unknown conserved protein (divided) [... 195 5e-49
pir||D81301 hypothetical protein Cj1542 [imported] - Campylobact... 175 4e-43
sp|P75744|YBGJ_ECOLI HYPOTHETICAL 23.9 KDA PROTEIN IN PHRB-NEI I... 159 3e-38
pir||B83083 conserved hypothetical protein PA4510 [imported] - P... 155 4e-37
sp|P44299|YBGJ_HAEIN HYPOTHETICAL PROTEIN HI1731 >gi|1074915|pir... 149 3e-35
gb|AAC46262.1| (AF006000) unknown [Bordetella pertussis] 145 5e-34
pir||G81993 hypothetical protein NMA0028 [imported] - Neisseria ... 145 6e-34
pir||G81223 conserved hypothetical protein NMB0230 [imported] - ... 145 6e-34
pir||C75582 conserved hypothetical protein - Deinococcus radiodu... 139 2e-32
pir||F83382 hypothetical protein PA2111 [imported] - Pseudomonas... 126 2e-28
pir||A82420 conserved hypothetical protein VCA0777 [imported] - ... 119 3e-26
emb|CAB56672.1| (AL121596) hypothetical protein SCF51A.20 [Strep... 111 1e-23
pir||B83585 hypothetical protein PA0495 [imported] - Pseudomonas... 78 7e-14
pir||C70627 hypothetical protein Rv0264c - Mycobacterium tubercu... 76 5e-13
prf||2009329A urea amidolyase [Pichia jadinii] 71 2e-11
gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] 68 1e-10
gi|6319685 Urea amidolyase (contains urea carboxylase and alloph... 68 1e-10
>pir||G75074 hypothetical protein PAB1713 - Pyrococcus abyssi (strain Orsay)
>gi|5458412|emb|CAB49900.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 225
Score = 463 bits (1178), Expect = e-129
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MLIKPAGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLK 60
MLIKPAGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLK
Sbjct: 1 MLIKPAGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLK 60
Query: 61 ASYEEVESYVRRISTQEVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIHSK 120
ASYEEVESYVRRISTQEVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIHSK
Sbjct: 61 ASYEEVESYVRRISTQEVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIHSK 120
Query: 121 PLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGGWR 180
PLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGGWR
Sbjct: 121 PLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGGWR 180
Query: 181 IIGRTPLRTFNPGKVPPSIVLPGDYVKFVPIDEMEFWEIYRREWE 225
IIGRTPLRTFNPGKVPPSIVLPGDYVKFVPIDEMEFWEIYRREWE
Sbjct: 181 IIGRTPLRTFNPGKVPPSIVLPGDYVKFVPIDEMEFWEIYRREWE 225
>pir||F71090 hypothetical protein PH0987 - Pyrococcus horikoshii
>gi|3257401|dbj|BAA30084.1| (AP000004) 225aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 225
Score = 434 bits (1103), Expect = e-121
Identities = 205/225 (91%), Positives = 219/225 (97%)
Query: 1 MLIKPAGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLK 60
M+IKPAGDS+ LISFGD ISEEINDRVH+LA+AIE++SPEWLVE+VPAYSSLLVIYDPLK
Sbjct: 1 MIIKPAGDSAFLISFGDEISEEINDRVHSLAKAIEKESPEWLVELVPAYSSLLVIYDPLK 60
Query: 61 ASYEEVESYVRRISTQEVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIHSK 120
ASYEEVESY++RIS +EVE+IKGKT+EIPVAYGGEFGPDIEFVA+YNGLSVDDVIEIHSK
Sbjct: 61 ASYEEVESYLKRISAREVERIKGKTIEIPVAYGGEFGPDIEFVAQYNGLSVDDVIEIHSK 120
Query: 121 PLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGGWR 180
PLYRVYFLGFLPGFAYLGGMDERIATPRLEKPR+KVPAGSVGIAGKQTGWYAIESPGGWR
Sbjct: 121 PLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRLKVPAGSVGIAGKQTGWYAIESPGGWR 180
Query: 181 IIGRTPLRTFNPGKVPPSIVLPGDYVKFVPIDEMEFWEIYRREWE 225
IIGR PLRTFNPGKVPPSIVLPGDYVKFVPIDE EFWEIY REWE
Sbjct: 181 IIGRIPLRTFNPGKVPPSIVLPGDYVKFVPIDEKEFWEIYGREWE 225
>sp|P42967|YCSJ_BACSU HYPOTHETICAL 63.8 KD PROTEIN IN SIPU-PBPC INTERGENIC REGION
>gi|2127265|pir||I39898 urea amidolyase - Bacillus
subtilis (fragment) >gi|7474427|pir||G69765 allophanate
hydrolase homolog ycsJ - Bacillus subtilis
>gi|790943|dbj|BAA07361.1| (D38161) urea amidolyase
[Bacillus subtilis] >gi|1805477|dbj|BAA09039.1| (D50453)
homologues to hypothetical protein HI1731 of H.
influenzae [Bacillus subtilis]
>gi|2632709|emb|CAB12216.1| (Z99106) similar to
allophanate hydrolase [Bacillus subtilis]
>gi|1588449|prf||2208409M urea amidolyase [Bacillus
subtilis]
Length = 578
Score = 207 bits (521), Expect = 1e-52
Identities = 109/233 (46%), Positives = 146/233 (61%), Gaps = 16/233 (6%)
Query: 3 IKPAGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYD----- 57
I+ GDS+++I FG+ I+E++N VHA A IE +E +PA++SL V YD
Sbjct: 7 IEQLGDSAMMIRFGEEINEQVNGIVHAAAAYIEEQPFPGFIECIPAFTSLTVFYDMYEVY 66
Query: 58 ---------PLKASYEEVESYVRRISTQEVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNG 108
P ++ +VE + I+ E ++ + VEIPV YGGEFGPD+E VA+ N
Sbjct: 67 KHLPQGISSPFESVKRDVEERLAEIA--EDYEVNRRIVEIPVCYGGEFGPDLEEVAKINQ 124
Query: 109 LSVDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQT 168
LS ++VI+IH+ Y VY LGF PGF +LGGM +RIA PR PR +PAGSVGIAG QT
Sbjct: 125 LSPEEVIDIHTNGEYVVYMLGFAPGFPFLGGMSKRIAAPRKSSPRPSIPAGSVGIAGLQT 184
Query: 169 GWYAIESPGGWRIIGRTPLRTFNPGKVPPSIVLPGDYVKFVPIDEMEFWEIYR 221
G Y I +PGGW++IG+TPL F P + PP+++ GD VKFV I E I R
Sbjct: 185 GVYPISTPGGWQLIGKTPLALFRPQENPPTLLRAGDIVKFVRISEKTITPIRR 237
>dbj|BAB05536.1| (AP001513) unknown conserved protein (divided) [Bacillus
halodurans]
Length = 225
Score = 195 bits (490), Expect = 5e-49
Identities = 98/217 (45%), Positives = 142/217 (65%), Gaps = 11/217 (5%)
Query: 11 LLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLKASY-----EE 65
+L+ FG I + +V A +E + ++E VP+Y+S+ V YD LK +
Sbjct: 1 MLVQFGKEIGPHVQRKVDAFMTLLETEPFLGMLECVPSYTSVAVYYDILKIAPMIDHGTT 60
Query: 66 VESYVRRISTQEVEKIKGKTV------EIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIHS 119
VR++ ++++E++ TV EIPV YGG +GPD+E VA++N LS+++V+ IH+
Sbjct: 61 AFQVVRKLVSEKLEQMNEGTVKERNVIEIPVCYGGSYGPDLEEVAQHNQLSLEEVVNIHA 120
Query: 120 KPLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGGW 179
Y VY +GF PGF YLGGM +RIA PR ++PR +PAGSVGIAG+QTG Y+I++PGGW
Sbjct: 121 SKEYLVYMIGFAPGFPYLGGMPKRIAAPRRKEPRTLIPAGSVGIAGEQTGVYSIDTPGGW 180
Query: 180 RIIGRTPLRTFNPGKVPPSIVLPGDYVKFVPIDEMEF 216
+IIG+TPL F P PS++ GD+V+F PI E EF
Sbjct: 181 QIIGKTPLSLFRPTAKHPSLLQAGDFVRFQPITEKEF 217
>pir||D81301 hypothetical protein Cj1542 [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6968961|emb|CAB73958.1|
(AL139078) hypothetical protein Cj1542 [Campylobacter
jejuni]
Length = 246
Score = 175 bits (439), Expect = 4e-43
Identities = 92/221 (41%), Positives = 140/221 (62%), Gaps = 7/221 (3%)
Query: 6 AGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLV----EVVPAYSSLLVIYDPLKA 61
+G +LL+ F IS +IN V + + I++ E + E+V AY+SLL+ ++P
Sbjct: 7 SGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEIYGIDELVSAYASLLIYFNPCVL 66
Query: 62 SYEEVESYVRRIST--QEVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIHS 119
S + ++ +I + E+ +E+P+ Y EFG D+EFV ++N +S +++I +H+
Sbjct: 67 SLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEEFGLDLEFVCKHNQISKEELISLHT 126
Query: 120 KPLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGGW 179
KP Y V+ LGF+ GF YLGG+DER+ TPRL PR K+ AGSVGIA KQTG Y I SPGGW
Sbjct: 127 KPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPRAKIEAGSVGIADKQTGVYPISSPGGW 186
Query: 180 RIIGRTPLRTFN-PGKVPPSIVLPGDYVKFVPIDEMEFWEI 219
+II RTPL F+ + P+++ G ++KF I + EF++I
Sbjct: 187 QIIARTPLEFFDKEDEKNPTLLKAGMFLKFKAISKDEFFDI 227
>sp|P75744|YBGJ_ECOLI HYPOTHETICAL 23.9 KDA PROTEIN IN PHRB-NEI INTERGENIC REGION
>gi|7449866|pir||F64806 ybgJ protein - Escherichia coli
>gi|1786929|gb|AAC73805.1| (AE000174) putative
carboxylase [Escherichia coli K12]
>gi|4062307|dbj|BAA35375.1| (D90710) Hypothetical
protein HI1731 [Escherichia coli]
Length = 218
Score = 159 bits (398), Expect = 3e-38
Identities = 84/208 (40%), Positives = 127/208 (60%), Gaps = 3/208 (1%)
Query: 7 GDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIY-DPLKASYEE 65
G++++++ ++ R+ LA+ + D P +VE +P +++ VI +P + +
Sbjct: 10 GETAVVLELEPPVTLASQKRIWRLAQRLV-DMPN-VVEAIPGMNNITVILRNPESLALDA 67
Query: 66 VESYVRRISTQEVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIHSKPLYRV 125
+E R E + + + +EIPV YGG GPD+ VA + GLS V+E+HS Y V
Sbjct: 68 IERLQRWWEESEALEPESRFIEIPVVYGGAGGPDLAVVAAHCGLSEKQVVELHSSVEYVV 127
Query: 126 YFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGGWRIIGRT 185
+FLGF PGF YLG + E++ TPR +PR+ VPAGSVGI G QTG Y + +PGGW++IG T
Sbjct: 128 WFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPAGSVGIGGPQTGVYPLATPGGWQLIGHT 187
Query: 186 PLRTFNPGKVPPSIVLPGDYVKFVPIDE 213
L F+P + P ++ PGD V+FVP E
Sbjct: 188 SLSLFDPARDEPILLRPGDSVRFVPQKE 215
>pir||B83083 conserved hypothetical protein PA4510 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950750|gb|AAG07898.1|AE004864_10 (AE004864)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 225
Score = 155 bits (388), Expect = 4e-37
Identities = 87/225 (38%), Positives = 131/225 (57%), Gaps = 7/225 (3%)
Query: 3 IKPAGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLKAS 62
I+PAG +LL++ + +++ R+ LAR + E + ++VP +++L++ YDP + +
Sbjct: 4 IEPAGAEALLLTLAEEPEVDLSVRLAELARRLREGLGEGVRDLVPGWTTLMLHYDPYRIA 63
Query: 63 YEEVESYVRRISTQ----EVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIH 118
+ +E + + + + G+ EIPV Y GE D+ VA GL+ + VIE+H
Sbjct: 64 SQILEERLGPLLAEWHAWRPAEDAGRLHEIPVWYAGE---DLATVAVACGLTGEGVIELH 120
Query: 119 SKPLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGG 178
S YRV +GF PGFAYLGG+D R+ PR PR +VPAGS+ IA QT Y SPGG
Sbjct: 121 SAAEYRVGAIGFAPGFAYLGGLDPRLVLPRRATPRARVPAGSLAIAEAQTAIYPQASPGG 180
Query: 179 WRIIGRTPLRTFNPGKVPPSIVLPGDYVKFVPIDEMEFWEIYRRE 223
W ++GR+P R F+P PP + GD V+FV I F ++ RE
Sbjct: 181 WHLLGRSPWRPFDPAATPPCPLALGDRVRFVAIGREAFLDLGGRE 225
>sp|P44299|YBGJ_HAEIN HYPOTHETICAL PROTEIN HI1731 >gi|1074915|pir||C64041 hypothetical
protein HI1731 - Haemophilus influenzae (strain Rd KW20)
>gi|1574587|gb|AAC23377.1| (U32845) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 213
Score = 149 bits (372), Expect = 3e-35
Identities = 81/209 (38%), Positives = 123/209 (58%), Gaps = 2/209 (0%)
Query: 1 MLIKPAGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLK 60
M I P +S+++ S S + ++ A AR ++ S + +VEVV ++L V D
Sbjct: 1 MNIVPISESAVVCSLPPPASIQQQRQLWAFARQLQ--SEQDIVEVVLGMNNLTVFTDFFV 58
Query: 61 ASYEEVESYVRRISTQEVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIHSK 120
V+ + + +V +G+ +EIPV YGGE G D+ VA+++ + + +I++HS+
Sbjct: 59 DFKPLVQRLEQLWAELKVSDFQGRHIEIPVIYGGERGQDLSDVAKFHQTTPERIIQMHSE 118
Query: 121 PLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGGWR 180
P+Y VY +GF GF YLGG+ E + TPR PR VPAGSVGI G QTG Y SPGGW+
Sbjct: 119 PIYTVYMIGFQAGFPYLGGLPENLHTPRRATPRTVVPAGSVGIGGAQTGIYPFSSPGGWQ 178
Query: 181 IIGRTPLRTFNPGKVPPSIVLPGDYVKFV 209
+IG T F+ + P+++ GD VKF+
Sbjct: 179 LIGYTKQALFDKNQAQPTLLQAGDTVKFI 207
>gb|AAC46262.1| (AF006000) unknown [Bordetella pertussis]
Length = 568
Score = 145 bits (362), Expect = 5e-34
Identities = 80/207 (38%), Positives = 113/207 (53%), Gaps = 5/207 (2%)
Query: 3 IKPAGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLK-- 60
I P GD L++ FG I + A A + + +VVP+++++ V Y P
Sbjct: 17 ILPQGDRCLIVWFGAQIDAGVGRACLAAAGLLRAAGLAGVTDVVPSFAAVAVHYRPGPDG 76
Query: 61 -ASYEEVESYVRRISTQ--EVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEI 117
Y + + V R+ V+ G+ +EIPV YGGE GPD+E A GL+ + ++ +
Sbjct: 77 APDYATLAAQVERLLAGGIPVDDSAGREMEIPVCYGGEHGPDLEEAARAAGLTPEALVAL 136
Query: 118 HSKPLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPG 177
H P VY LGF PG +Y+G D R+ PR PR VPAGSV IA +QT Y PG
Sbjct: 137 HGAPGSMVYMLGFAPGHSYIGVHDARLDLPRRATPRTAVPAGSVAIANRQTVIYPARLPG 196
Query: 178 GWRIIGRTPLRTFNPGKVPPSIVLPGD 204
GW IIG TPL F+PG+ P +++ PG+
Sbjct: 197 GWNIIGATPLNLFDPGREPAALLQPGE 223
>pir||G81993 hypothetical protein NMA0028 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|6900437|emb|CAB72036.1|
(AJ391262) hypothetical protein (conserved) [Neisseria
meningitidis] >gi|7378805|emb|CAB83347.1| (AL162752)
hypothetical protein NMA0028 [Neisseria meningitidis
Z2491]
Length = 215
Score = 145 bits (361), Expect = 6e-34
Identities = 83/209 (39%), Positives = 117/209 (55%), Gaps = 6/209 (2%)
Query: 3 IKPAGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVI--YDPLK 60
I P +S+L+ ++ A A A+ + + + EVV ++L V +D
Sbjct: 5 ITPISESALVCRLNAPSELGKQQKLWAFAAALGQH--DRIEEVVVGMNNLTVFTRFDTDL 62
Query: 61 ASYEEVESYVRRISTQEVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIHSK 120
A+ + YV + V +GK VEIPV YGGE+GPD+ VA ++ + +++ H+
Sbjct: 63 ATLADELQYVWEHTA--VTDHQGKLVEIPVCYGGEYGPDLAEVAAFHQTVISEIVRRHTA 120
Query: 121 PLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGGWR 180
Y V+ +GF PGF YLGG+ E + TPR PR VPAGSVGI G QTG Y SPGGW+
Sbjct: 121 QTYTVFMMGFQPGFPYLGGLPEALHTPRRAVPRTSVPAGSVGIGGSQTGVYPFASPGGWQ 180
Query: 181 IIGRTPLRTFNPGKVPPSIVLPGDYVKFV 209
IIGRT L F PP+++ GD V+FV
Sbjct: 181 IIGRTELPLFRADLNPPTLLAAGDQVRFV 209
>pir||G81223 conserved hypothetical protein NMB0230 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225452|gb|AAF40685.1| (AE002380) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 215
Score = 145 bits (361), Expect = 6e-34
Identities = 83/209 (39%), Positives = 117/209 (55%), Gaps = 6/209 (2%)
Query: 3 IKPAGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVI--YDPLK 60
I P +S+L+ ++ A A A+ + + + EVV ++L V +D
Sbjct: 5 ITPISESALVYRLNAPSELGKQQKLWAFAAALGQH--DRIEEVVVGMNNLTVFTRFDTDL 62
Query: 61 ASYEEVESYVRRISTQEVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIHSK 120
A+ + YV + V +GK VEIPV YGGE+GPD+ VA ++ + +++ H+
Sbjct: 63 ATLADELQYVWEHTA--VTDHQGKLVEIPVCYGGEYGPDLAEVAAFHQTVISEIVRRHTA 120
Query: 121 PLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGGWR 180
Y V+ +GF PGF YLGG+ E + TPR PR VPAGSVGI G QTG Y SPGGW+
Sbjct: 121 QTYTVFMMGFQPGFPYLGGLPEALHTPRRAVPRTSVPAGSVGIGGSQTGVYPFASPGGWQ 180
Query: 181 IIGRTPLRTFNPGKVPPSIVLPGDYVKFV 209
IIGRT L F PP+++ GD V+FV
Sbjct: 181 IIGRTELPLFRADLNPPTLLAAGDQVRFV 209
>pir||C75582 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460772|gb|AAF12477.1|AE001863_102 (AE001863)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 227
Score = 139 bits (348), Expect = 2e-32
Identities = 72/182 (39%), Positives = 111/182 (60%), Gaps = 4/182 (2%)
Query: 29 ALARAIERDSPEWLVEVVPAYSSLLVIYDPLKASYEEVESYVRRISTQEVEKIKGKTVEI 88
ALA A+ +V+ VPAY SL V YDP S +E+ +++ ++S + + + + +++
Sbjct: 23 ALAEALLAAGLPGVVDAVPAYRSLYVEYDPEGTSADELRAWLAQVSVEGTAQAQ-REIKL 81
Query: 89 PVAYGGEFGPDIEFVAEYNGLSVDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDERIATPR 148
PV Y G D+ VA + GLSV +VIE+HS+P YRV LGF+ GF ++ E + PR
Sbjct: 82 PVVYDGA---DLPEVAAHAGLSVAEVIELHSEPTYRVRALGFVAGFPFMETTPELLQVPR 138
Query: 149 LEKPRVKVPAGSVGIAGKQTGWYAIESPGGWRIIGRTPLRTFNPGKVPPSIVLPGDYVKF 208
PR VP S+ +A QTG Y + +PGGW ++GRT + ++P + P ++ PGD V+F
Sbjct: 139 RATPRAAVPPHSLAVANAQTGIYPVTAPGGWNLLGRTLVPVYDPHRAEPFLLRPGDTVRF 198
Query: 209 VP 210
VP
Sbjct: 199 VP 200
>pir||F83382 hypothetical protein PA2111 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948125|gb|AAG05499.1|AE004638_9
(AE004638) hypothetical protein [Pseudomonas aeruginosa]
Length = 237
Score = 126 bits (314), Expect = 2e-28
Identities = 70/177 (39%), Positives = 105/177 (58%), Gaps = 2/177 (1%)
Query: 42 LVEVVPAYSSLLVIYDPLKASYEEVESYVRRISTQEVEKIK--GKTVEIPVAYGGEFGPD 99
L+++VP+Y++LL+ YD L+ E + + + K + G+ +P Y GPD
Sbjct: 47 LLDLVPSYTTLLLQYDLLQLDPGEARARIAAALSDLRPKRQDGGRLHILPTWYDPRVGPD 106
Query: 100 IEFVAEYNGLSVDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAG 159
+ +A L V ++I HS+ YRV+ LGF PGFA++G ++E +A PRL PR ++ AG
Sbjct: 107 LAPLARRKQLGVAELIRRHSQREYRVFALGFSPGFAFMGLVEEALAAPRLATPRQRIAAG 166
Query: 160 SVGIAGKQTGWYAIESPGGWRIIGRTPLRTFNPGKVPPSIVLPGDYVKFVPIDEMEF 216
SVGIA +QT Y SPGGW ++GR P+R F+ S++ GD V+F PI EF
Sbjct: 167 SVGIAERQTAVYPQASPGGWNLLGRCPVRLFDLTLDGYSLLRAGDRVRFEPIGHAEF 223
>pir||A82420 conserved hypothetical protein VCA0777 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658200|gb|AAF96675.1|
(AE004405) conserved hypothetical protein [Vibrio
cholerae]
Length = 236
Score = 119 bits (296), Expect = 3e-26
Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 3/219 (1%)
Query: 3 IKPAGDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLKAS 62
I+P + S+L+ F + + A I + L+ V P+Y++LL+ Y P + +
Sbjct: 7 IEPIAEGSILVRFQHPADATLAMHIGQCAHDIMQSLAYGLMNVTPSYTTLLIDYLPYRLT 66
Query: 63 YEEVESYVRRISTQ--EVEKIKGKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIHSK 120
+E+ + + + Q + +E+PV Y + G D+ E GL++ +VI++H+
Sbjct: 67 QKELVAQLTLLLNQPRQSNHANANLIELPVYYHPDVGLDLIRYQE-QGLALAEVIQLHTS 125
Query: 121 PLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGGWR 180
Y V +GF PGFA++ + E + PR PR+ +P GSVGIA +QT Y SPGGW
Sbjct: 126 VTYTVAAIGFAPGFAFMTQVAEPLRRPRRTTPRLMLPKGSVGIAEQQTAIYPNASPGGWN 185
Query: 181 IIGRTPLRTFNPGKVPPSIVLPGDYVKFVPIDEMEFWEI 219
IIG P F+P + P S G V+F I+ EF ++
Sbjct: 186 IIGNCPQTLFDPRQEPMSPWQIGTQVRFRSIERDEFIQL 224
>emb|CAB56672.1| (AL121596) hypothetical protein SCF51A.20 [Streptomyces coelicolor
A3(2)]
Length = 252
Score = 111 bits (274), Expect = 1e-23
Identities = 76/216 (35%), Positives = 110/216 (50%), Gaps = 20/216 (9%)
Query: 4 KPAGDSSLLISFGDVISEEINDRVHA--LARAIERDSPEWLVEVVPAYSSLLVIYDPLKA 61
+PAG +LL+ D E HA L R P + EVVP ++L+ P
Sbjct: 10 RPAGRHALLVELRDA---EHTAAFHAEVLRRRAAGALPP-VTEVVPGARTVLLDGVP--- 62
Query: 62 SYEEVESYVRRISTQEVEKIK---GKTVEIPVAYGGEFGPDIEFVAEYNGLSVDDVIEIH 118
+ ++ RR++ +V + G VEIPV Y G PD+ VA G+ D+V +H
Sbjct: 63 ---DPDALARRVADWQVPPVADDTGAVVEIPVRYDG---PDLADVAALWGVGPDEVGALH 116
Query: 119 SKPLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKVPAGSVGIAGKQTGWYAIESPGG 178
YRV F GF PGF YL G+ R+ PR PR +VPAG+V +AG + Y +PGG
Sbjct: 117 RSHAYRVAFCGFAPGFGYLTGLPPRLHVPRRSTPRTRVPAGAVALAGPYSAVYPRATPGG 176
Query: 179 WRIIGR--TPLRTFNPGKVPPSIVLPGDYVKFVPID 212
W++IG P ++P + +++ PG V+FV D
Sbjct: 177 WQLIGTMPDPRPLWDPARERAALLTPGTRVRFVTAD 212
>pir||B83585 hypothetical protein PA0495 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9946358|gb|AAG03884.1|AE004486_13
(AE004486) hypothetical protein [Pseudomonas aeruginosa]
Length = 292
Score = 78.4 bits (190), Expect = 7e-14
Identities = 66/238 (27%), Positives = 110/238 (45%), Gaps = 28/238 (11%)
Query: 7 GDSSLLISFGDVISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLKASYEEV 66
GD L + +S E R A+ RAIE +++V A +S V +DP + + + +
Sbjct: 11 GDEHLFAEVAEAMSLEAFFRGMAITRAIEALQLPGVLDVCLANASFQVRFDPDRLAPQAL 70
Query: 67 ESYVRRISTQEV--EKIKGKTVEIPVAYGGEF----------------GPDIEFVAEYNG 108
VR + + V I+ + VE+PV Y + D+E+ A NG
Sbjct: 71 LETVRGLEAEAVAARSIETRIVEVPVLYNDPWTHETLMRFRDRHQDPDSTDLEYAARING 130
Query: 109 LS-VDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDER---IATPRLEKPRVKVPAGSVGIA 164
+ V I+ HS + V +GF+ G ++ M ER + P+ +PR+ P ++G
Sbjct: 131 YADVQAFIQAHSGTPWFVSMVGFVAGLPFMYQMVERERQLQVPKYLRPRIDTPKLTLGHG 190
Query: 165 GKQTGWYAIESPGGWRIIGRTPLRTFNPGKVPP----SIVL--PGDYVKFVPIDEMEF 216
G Y++ GG+++ G TP F+P + P S+V GD V+F PI+ E+
Sbjct: 191 GCFGCIYSVRGAGGYQMFGVTPAPIFDPRQGLPYLEESMVFFRAGDIVQFRPIERTEY 248
>pir||C70627 hypothetical protein Rv0264c - Mycobacterium tuberculosis (strain
H37RV) >gi|1850109|emb|CAB06691.1| (Z86089) hypothetical
protein Rv0264c [Mycobacterium tuberculosis]
Length = 210
Score = 75.7 bits (183), Expect = 5e-13
Identities = 40/112 (35%), Positives = 60/112 (52%)
Query: 97 GPDIEFVAEYNGLSVDDVIEIHSKPLYRVYFLGFLPGFAYLGGMDERIATPRLEKPRVKV 156
GPD+ VA GL+ VI H+ +R F G PGFAYL D + PR + R +
Sbjct: 96 GPDLAEVARCTGLTTAAVINAHTATGWRAGFSGSAPGFAYLIDGDPSLRVPRRPERRTSM 155
Query: 157 PAGSVGIAGKQTGWYAIESPGGWRIIGRTPLRTFNPGKVPPSIVLPGDYVKF 208
P GSV +A + Y ++P W+IIG T ++ + P+++ PG +V+F
Sbjct: 156 PPGSVALADGFSAIYPSQAPSDWQIIGHTDAVLWDVDRPQPALLTPGMWVQF 207
>prf||2009329A urea amidolyase [Pichia jadinii]
Length = 1830
Score = 70.6 bits (170), Expect = 2e-11
Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 40/248 (16%)
Query: 4 KPAGDSSLLISFGDVISE-EINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPLKAS 62
+ AGD +L+ +G++ + + R++ L +E +VE+ S+L+ +D K S
Sbjct: 1436 RQAGDRYILVEYGELKMDLNYSYRINRLTNLVENHQTVGIVEMSQGVRSVLIEFDGYKIS 1495
Query: 63 Y----EEVESYVRRISTQEVEKIKGKTVEIPVAYGGE-------------------FGPD 99
E + +Y R I + K+K K ++P+A+ + +
Sbjct: 1496 QKDLLETLIAYEREILFENKWKVKSKIFKLPMAFEDKKTLACVTRYQETIRSEAPWLPNN 1555
Query: 100 IEFVAEYNGLSVDDVIEIHSKPLYRVYFLGFLPGFAYLGG-----MD--ERIATPRLEKP 152
++F+A N ++ +DV ++ LY +L G +LG +D R+ +
Sbjct: 1556 VDFIANVNDITREDVRDM----LYSAKYLVLGLGDVFLGAPCAVPLDPRHRLMGTKYNPS 1611
Query: 153 RVKVPAGSVGIAGKQTGWYAIESPGGWRIIGRT-----PLRTFNPGKVPPSIVLPGDYVK 207
R G VGI G YA++SPGG++++GRT L+ P ++ P D V+
Sbjct: 1612 RTYTANGVVGIGGMYMCIYAMDSPGGYQLVGRTIPIWDKLKLGAHSTEHPWLLTPFDQVE 1671
Query: 208 FVPIDEME 215
F P+ E E
Sbjct: 1672 FYPVSEEE 1679
>gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae]
Length = 1835
Score = 67.9 bits (163), Expect = 1e-10
Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 39/248 (15%)
Query: 1 MLIKPAGDSSLLISFGD-VISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPL 59
++ + AGD +L+ +GD ++ I+ R+ L ++++ +VE+ S+L+ +D
Sbjct: 1436 VVYRQAGDRYVLVEYGDNEMNFNISYRIECLISLVKKNKTIGIVEMSQGVRSVLIEFDGY 1495
Query: 60 KASYEEV----ESYVRRISTQEVEKIKGKTVEIPVAYGGE-------------------F 96
K + +E+ +Y I E KI + +P+A+
Sbjct: 1496 KVTQKELLKVLVAYETEIQFDENWKITSNIIRLPMAFEDSKTLACVQRYQETIRSSAPWL 1555
Query: 97 GPDIEFVAEYNGLSVDDVIEIHSKPLYRVYFLGFLPGFAYLGG-----MD--ERIATPRL 149
+++F+A NG+S ++V ++ LY F+ G +LG +D R +
Sbjct: 1556 PNNVDFIANVNGISRNEVYDM----LYSARFMVLGLGDVFLGSPCAVPLDPRHRFLGSKY 1611
Query: 150 EKPRVKVPAGSVGIAGKQTGWYAIESPGGWRIIGRT-PL---RTFNPGKVPPSIVLPGDY 205
R G+VGI G YA SPGG++++GRT P+ P ++ P D
Sbjct: 1612 NPSRTYTERGAVGIGGMYMCIYAANSPGGYQLVGRTIPIWDKLCLAASSEVPWLMNPFDQ 1671
Query: 206 VKFVPIDE 213
V+F P+ E
Sbjct: 1672 VEFYPVSE 1679
>gi|6319685 Urea amidolyase (contains urea carboxylase and allophanate
hydrolase); Dur1,2p [Saccharomyces cerevisiae]
>gi|585072|sp|P32528|DUR1_YEAST UREA AMIDOLYASE
[INCLUDES: UREA CARBOXYLASE ; ALLOPHANATE HYDROLASE ]
>gi|626973|pir||S46082 urea carboxylase (EC 6.3.4.6) -
yeast (Saccharomyces cerevisiae)
>gi|536588|emb|CAA85172.1| (Z36077) ORF YBR208c
[Saccharomyces cerevisiae]
Length = 1835
Score = 67.9 bits (163), Expect = 1e-10
Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 39/248 (15%)
Query: 1 MLIKPAGDSSLLISFGD-VISEEINDRVHALARAIERDSPEWLVEVVPAYSSLLVIYDPL 59
++ + AGD +L+ +GD ++ I+ R+ L ++++ +VE+ S+L+ +D
Sbjct: 1436 VVYRQAGDRYVLVEYGDNEMNFNISYRIECLISLVKKNKTIGIVEMSQGVRSVLIEFDGY 1495
Query: 60 KASYEEV----ESYVRRISTQEVEKIKGKTVEIPVAYGGE-------------------F 96
K + +E+ +Y I E KI + +P+A+
Sbjct: 1496 KVTQKELLKVLVAYETEIQFDENWKITSNIIRLPMAFEDSKTLACVQRYQETIRSSAPWL 1555
Query: 97 GPDIEFVAEYNGLSVDDVIEIHSKPLYRVYFLGFLPGFAYLGG-----MD--ERIATPRL 149
+++F+A NG+S ++V ++ LY F+ G +LG +D R +
Sbjct: 1556 PNNVDFIANVNGISRNEVYDM----LYSARFMVLGLGDVFLGSPCAVPLDPRHRFLGSKY 1611
Query: 150 EKPRVKVPAGSVGIAGKQTGWYAIESPGGWRIIGRT-PL---RTFNPGKVPPSIVLPGDY 205
R G+VGI G YA SPGG++++GRT P+ P ++ P D
Sbjct: 1612 NPSRTYTERGAVGIGGMYMCIYAANSPGGYQLVGRTIPIWDKLCLAASSEVPWLMNPFDQ 1671
Query: 206 VKFVPIDE 213
V+F P+ E
Sbjct: 1672 VEFYPVSE 1679
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.142 0.429
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95076797
Number of Sequences: 2977
Number of extensions: 4408257
Number of successful extensions: 9351
Number of sequences better than 1.0e-10: 20
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9316
Number of HSP's gapped (non-prelim): 24
length of query: 225
length of database: 189,106,746
effective HSP length: 51
effective length of query: 174
effective length of database: 158,583,909
effective search space: 27593600166
effective search space used: 27593600166
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)