BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB1714 (PAB1714) DE:Hypothetical protein (331 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||F75074 hypothetical protein PAB1714 - Pyrococcus abyssi (st... 667 0.0 pir||G71090 hypothetical protein PH0988 - Pyrococcus horikoshii ... 584 e-166 dbj|BAB05537.1| (AP001513) unknown conserved protein (divided) [... 224 1e-57 pir||E81301 hypothetical protein Cj1543 [imported] - Campylobact... 186 4e-46 pir||D82417 conserved hypothetical protein VCA0778 [imported] - ... 180 3e-44 pir||H81993 hypothetical protein NMA0029 [imported] - Neisseria ... 176 2e-43 sp|P44298|YBGK_HAEIN HYPOTHETICAL PROTEIN HI1730 >gi|1074914|pir... 175 9e-43 gb|AAC46262.1| (AF006000) unknown [Bordetella pertussis] 162 5e-39 sp|P75745|YBGK_ECOLI HYPOTHETICAL 34.4 KDA PROTEIN IN PHRB-NEI I... 161 1e-38 pir||C83585 conserved hypothetical protein PA0496 [imported] - P... 161 1e-38 prf||2009329A urea amidolyase [Pichia jadinii] 161 1e-38 emb|CAB56673.1| (AL121596) hypothetical protein SCF51A.21 [Strep... 149 4e-35 pir||B70627 hypothetical protein Rv0263c - Mycobacterium tubercu... 141 8e-33 pir||E83382 hypothetical protein PA2110 [imported] - Pseudomonas... 140 2e-32 gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] 138 7e-32 gi|6319685 Urea amidolyase (contains urea carboxylase and alloph... 137 2e-31 pir||A83083 hypothetical protein PA4509 [imported] - Pseudomonas... 131 2e-29 emb|CAB48407.1| (AJ243652) urea amidolyase homologue [Pseudomona... 125 7e-28 >pir||F75074 hypothetical protein PAB1714 - Pyrococcus abyssi (strain Orsay) >gi|5458411|emb|CAB49899.1| (AJ248286) hypothetical protein [Pyrococcus abyssi] Length = 331 Score = 667 bits (1702), Expect = 0.0 Identities = 331/331 (100%), Positives = 331/331 (100%) Query: 1 MGMIEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLS 60 MGMIEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLS Sbjct: 1 MGMIEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLS 60 Query: 61 GPTIRFHSSSVFAITGDVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGI 120 GPTIRFHSSSVFAITGDVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGI Sbjct: 61 GPTIRFHSSSVFAITGDVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGI 120 Query: 121 ECQKILGSCATYSRAKFGRPLKPGDKLKLGYAILTGKAGKFLPEELVPRYGNDVRVTLGP 180 ECQKILGSCATYSRAKFGRPLKPGDKLKLGYAILTGKAGKFLPEELVPRYGNDVRVTLGP Sbjct: 121 ECQKILGSCATYSRAKFGRPLKPGDKLKLGYAILTGKAGKFLPEELVPRYGNDVRVTLGP 180 Query: 181 NLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPLGSIQVPAN 240 NLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPLGSIQVPAN Sbjct: 181 NLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPLGSIQVPAN 240 Query: 241 GKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGVKESQELLRARERTM 300 GKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGVKESQELLRARERTM Sbjct: 241 GKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGVKESQELLRARERTM 300 Query: 301 KALRKALIGEGNLFRIKLKNFEGLIFAYIDE 331 KALRKALIGEGNLFRIKLKNFEGLIFAYIDE Sbjct: 301 KALRKALIGEGNLFRIKLKNFEGLIFAYIDE 331 >pir||G71090 hypothetical protein PH0988 - Pyrococcus horikoshii >gi|3257402|dbj|BAA30085.1| (AP000004) 331aa long hypothetical protein [Pyrococcus horikoshii] Length = 331 Score = 584 bits (1490), Expect = e-166 Identities = 280/331 (84%), Positives = 309/331 (92%) Query: 1 MGMIEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLS 60 MGMIEI+SAPSPLLIQDLGRRGYLKYGVP+SGVMDEVSARLANYLVGNPDD+PLLEFTL Sbjct: 1 MGMIEIISAPSPLLIQDLGRRGYLKYGVPKSGVMDEVSARLANYLVGNPDDSPLLEFTLV 60 Query: 61 GPTIRFHSSSVFAITGDVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGI 120 GPTIRF+SS+VFA+ GDVD YLNDVKIEPWRSYWAK GD+L+VG LKSGMYGYIAFAGGI Sbjct: 61 GPTIRFNSSAVFAVAGDVDVYLNDVKIEPWRSYWAKRGDILRVGMLKSGMYGYIAFAGGI 120 Query: 121 ECQKILGSCATYSRAKFGRPLKPGDKLKLGYAILTGKAGKFLPEELVPRYGNDVRVTLGP 180 EC +ILGSC+TY RA FG+PLKPGDKLKLGYAILT K GK LPEE +P+YG ++RV LGP Sbjct: 121 ECDRILGSCSTYLRANFGKPLKPGDKLKLGYAILTEKVGKSLPEEFIPKYGKEIRVILGP 180 Query: 181 NLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPLGSIQVPAN 240 NLENFT++GIETFL +EYVVT+ESDRMGYRLDGP+IEHS+KGADI+TE IPLGSIQVPAN Sbjct: 181 NLENFTRNGIETFLISEYVVTKESDRMGYRLDGPRIEHSDKGADIITEAIPLGSIQVPAN 240 Query: 241 GKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGVKESQELLRARERTM 300 GKPIVMLAD+QTTGGYAKI VVS+VDLP IAQKRPGEKV+FREI VKE+QELL+ARERTM Sbjct: 241 GKPIVMLADAQTTGGYAKIAVVSKVDLPAIAQKRPGEKVKFREISVKEAQELLKARERTM 300 Query: 301 KALRKALIGEGNLFRIKLKNFEGLIFAYIDE 331 KALRKAL EGNLFRIK+K+FEGLIFAY DE Sbjct: 301 KALRKALTAEGNLFRIKIKDFEGLIFAYTDE 331 >dbj|BAB05537.1| (AP001513) unknown conserved protein (divided) [Bacillus halodurans] Length = 331 Score = 224 bits (565), Expect = 1e-57 Identities = 130/316 (41%), Positives = 182/316 (57%), Gaps = 24/316 (7%) Query: 15 IQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGPTIRFHSSSVFAI 74 IQDLGR GYLKYGV SG MDE + R+AN LVGN + A LLE T GPTI+F S + A+ Sbjct: 12 IQDLGRTGYLKYGVIVSGPMDEYAHRMANLLVGNDEKAALLEMTFIGPTIQFTSDQLIAM 71 Query: 75 TG-DVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGIECQKILGSCATYS 133 TG D+ ++ + +R + K G VL G K+G Y+A GGI+ K++ S +TY Sbjct: 72 TGGDLSPTIDGHSVPMYRPVFVKKGAVLSFGRCKTGCRSYLAIGGGIDVPKVMNSRSTYL 131 Query: 134 RAKFG----RPLKPGDKLKLG------------------YAILTGKAGKFLPEELVPRYG 171 RAK G R L GD+L G ++ T K + Sbjct: 132 RAKIGGFQGRALVEGDELICGAPPEQTERLVKTCQKGIVHSFATTKWSVVSSQRSRDGAE 191 Query: 172 NDVRVTLGPNLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIP 231 VRVT+G + E F++ F + + VT +SDRMGYRL GP +E E+ ++++EPI Sbjct: 192 KVVRVTVGSHYEQFSEASQHKFFSETFQVTSKSDRMGYRLKGPTLERLEE-QELISEPIS 250 Query: 232 LGSIQVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGVKESQE 291 +G+IQVPA+G PI+++AD QTTGGY +I V VDLP IAQ +PG +RF++ +KE++ Sbjct: 251 VGTIQVPADGNPIILMADRQTTGGYPRIAHVIAVDLPIIAQAKPGAAIRFQQASLKEAER 310 Query: 292 LLRARERTMKALRKAL 307 L R R L+ ++ Sbjct: 311 LYIRRAREFNELKTSI 326 >pir||E81301 hypothetical protein Cj1543 [imported] - Campylobacter jejuni (strain NCTC 11168) >gi|6968962|emb|CAB73959.1| (AL139078) hypothetical protein Cj1543 [Campylobacter jejuni] Length = 321 Score = 186 bits (467), Expect = 4e-46 Identities = 117/312 (37%), Positives = 170/312 (53%), Gaps = 17/312 (5%) Query: 4 IEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGPT 63 I+I+ A +QD GR+ + K+G+ RSG MDE + R+AN L+GN D +E L G Sbjct: 3 IKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANILLGNKQDEAGIELCLKGGK 62 Query: 64 IRFHSSSVFAITG-DVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGIEC 122 F + F ++G + +A L++ KI+ + Y A GD+L++ K G GY+ AGG E Sbjct: 63 YEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILELDLAKIGFRGYLCVAGGFEV 122 Query: 123 QKILGSCATYSRAKFGRPLKPGDKLKLGYAILTGKAGKFLPEELVPRYGND--------- 173 + L S + S AK G + G L+ + T F+P L R + Sbjct: 123 KSFLNSKS--SDAKMGAGVFEGRALQKDDILNTHNT--FIPFNLEARECENPLFKSPKEP 178 Query: 174 -VRVTLGPNLENFTKHGIETFLTAEYVVTQESDRMG-YRLDGPKIEHSEKGADIVTEPIP 231 +RV LG N + FT+ GIETFL Y V +SDRM Y IEH + ADI+++P Sbjct: 179 IIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAESSESIEH-KNSADIISDPAV 237 Query: 232 LGSIQVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGVKESQE 291 GSIQVP +G PI+++A Q+TGGY KI V DL +AQ + G +F+ I ++E+ E Sbjct: 238 FGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLLAQAKLGSSFKFQSISMQEALE 297 Query: 292 LLRARERTMKAL 303 L + RE KA+ Sbjct: 298 LYKQREMKFKAM 309 >pir||D82417 conserved hypothetical protein VCA0778 [imported] - Vibrio cholerae (group O1 strain N16961) >gi|9658202|gb|AAF96676.1| (AE004406) conserved hypothetical protein [Vibrio cholerae] Length = 309 Score = 180 bits (451), Expect = 3e-44 Identities = 105/289 (36%), Positives = 159/289 (54%), Gaps = 10/289 (3%) Query: 1 MGMIEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLS 60 +G + ++ A L+ DLGR G+ +G+ SG +DE + AN+L+ NP + LE TL Sbjct: 2 LGKLHVIKAGPLTLLHDLGRYGFSHFGITPSGPLDEYAYSWANHLLANPVNCATLEITLG 61 Query: 61 GPTIRFHSSSVFAITG-DVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGG 119 S + AI G D++A L+ I W ++AK G L+ G ++G+ Y+A GG Sbjct: 62 PAEFLLRSDAQLAIAGGDLNATLDGRPIANWSRFYAKQGQTLRFGLPRNGLRAYLAVQGG 121 Query: 120 IECQKILGSCATYSRAKFGRPLKPGDKLKLGY-AILTGKAGKFLPEELVPRYGND----- 173 LGS +T+ R G G L+ G + + + P ++ R+ D Sbjct: 122 FTVSPQLGSVSTHVRQGLGGLTSQGLALQTGDDLVFSAQQIAQKPVQMTFRFRPDYNLPL 181 Query: 174 -VRVTLGPNLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPL 232 +RV + F+ +E+F +E++VT SDRMGYRL G I ++ I++E I L Sbjct: 182 RLRVIESYQYQAFSPSAMESFYRSEFIVTPNSDRMGYRLQGETISPPDQA--ILSEGIAL 239 Query: 233 GSIQVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRF 281 G+IQVP NG+PI++L D QT GGY K+G V+R+DLP +AQ +PG VRF Sbjct: 240 GAIQVPPNGQPIILLNDRQTIGGYPKLGCVARIDLPRLAQAKPGHSVRF 288 >pir||H81993 hypothetical protein NMA0029 [imported] - Neisseria meningitidis (group A strain Z2491) >gi|6900438|emb|CAB72037.1| (AJ391262) hypothetical protein (conserved) [Neisseria meningitidis] >gi|7378806|emb|CAB83348.1| (AL162752) hypothetical protein NMA0029 [Neisseria meningitidis Z2491] Length = 309 Score = 176 bits (443), Expect = 2e-43 Identities = 106/310 (34%), Positives = 166/310 (53%), Gaps = 14/310 (4%) Query: 3 MIEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGP 62 MI + + +P IQD GR G+ +YG+ +G MD V+ N L+GN + +E L G Sbjct: 1 MIHVSAVQAPAHIQDTGRYGHRRYGIGHAGAMDTVALAAGNILLGNDEGTAAIEIALGGI 60 Query: 63 TIRFHSSSVFAITGDVDAYLNDVKIEPWRSYW---AKSGDVLKVGTLKSGMYGYIAFAGG 119 + F + F +TG V Y ++ EP SYW A+ G LK+ GMYGY+ AGG Sbjct: 61 MLVFERDTPFCLTGAV--YQAELDGEPVYSYWRYTARKGQTLKLVRAVQGMYGYVCVAGG 118 Query: 120 IECQKILGSCATYSRAKFG----RPLKPGDKLKLGYAILTGKAGKFLPEELVPRYGNDVR 175 + +++GS +T +A FG R L+ GD L +G P +P + + V Sbjct: 119 FDVPEVMGSRSTDLKAGFGGHQGRMLQKGDYLPIGKGAQELSKVGIAP---IP-FTDTVH 174 Query: 176 VTLGPNLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPLGSI 235 + F++ G + + +S+RMGYR DG + S+ ++++ + G++ Sbjct: 175 LVPSSEYAAFSEKGRLNLERETWTLQSDSNRMGYRFDGQPLTLSQP-LEMLSHAVQAGTV 233 Query: 236 QVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGVKESQELLRA 295 QVP GKPI++LAD+QTTGGY KI V+ DL +AQ R G KV+F+ IG+K++ L R Sbjct: 234 QVPPGGKPIILLADAQTTGGYPKIATVAAADLGKLAQVRFGSKVKFKIIGLKKATALRRK 293 Query: 296 RERTMKALRK 305 + + +R+ Sbjct: 294 NQAYLNQIRR 303 >sp|P44298|YBGK_HAEIN HYPOTHETICAL PROTEIN HI1730 >gi|1074914|pir||B64041 hypothetical protein HI1730 - Haemophilus influenzae (strain Rd KW20) >gi|1574586|gb|AAC23376.1| (U32845) conserved hypothetical protein [Haemophilus influenzae Rd] Length = 309 Score = 175 bits (438), Expect = 9e-43 Identities = 108/317 (34%), Positives = 170/317 (53%), Gaps = 15/317 (4%) Query: 3 MIEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGP 62 MI+IL S IQDLGR G ++G+ G MD+++ R N L+GN ++ P +E L G Sbjct: 1 MIDILDVKSRATIQDLGRFGLRRFGISHCGAMDKLALRAGNILLGNAENVPAIEVPLGGI 60 Query: 63 TIRFHSSSVFAITGDV-DAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGIE 121 T++F F +TG + L+D + + Y ++G +LK+ K GMYGY+ GG Sbjct: 61 TLQFQQDMNFCVTGAFYEMMLDDKPVFAYWRYQVRAGQILKMARAKIGMYGYLCVQGGFV 120 Query: 122 CQKILGSCATYSRAKFG----RPLKPGDKLKLGYA-ILTGKAGKFLPEELVPRYGNDV-R 175 + L SC+T RA+ G R L+ GD+L+ IL + G + P DV R Sbjct: 121 LPQALNSCSTDLRAQIGGIEGRCLQAGDQLQTANDHILRSEIG------IAPIPLRDVIR 174 Query: 176 VTLGPNLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPLGSI 235 + F + + E+ + SDRMGYR G +E + ++++ I GS+ Sbjct: 175 ALPSSEYQAFKRKSQYYWWRNEWTLQSNSDRMGYRFQGQTLELKQP-LEMLSHAIQFGSV 233 Query: 236 QVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGVKESQELLRA 295 QVP +G+PI+++AD+QTTGGY KI V DL +AQ R G ++F + ++E+ +L R Sbjct: 234 QVPPSGQPIILMADAQTTGGYPKIANVIDADLGALAQVRLGSTIKFEAVSLQEAAKLRRK 293 Query: 296 RERTMKALRKALIGEGN 312 E + +R+ ++ E N Sbjct: 294 NEIYLDQIRR-IVDEKN 309 >gb|AAC46262.1| (AF006000) unknown [Bordetella pertussis] Length = 568 Score = 162 bits (406), Expect = 5e-39 Identities = 111/324 (34%), Positives = 166/324 (50%), Gaps = 33/324 (10%) Query: 16 QDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGPTIRFHSSSVFAIT 75 QD GR GY G+P +G MD + RLAN L GN D LE T++GPT+RF + + A+ Sbjct: 257 QDGGRHGYQHQGIPVAGAMDPRAHRLANLLAGNAADTATLEITVAGPTLRFEAPACVALG 316 Query: 76 G-DVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGIECQKILGSCATYSR 134 G D+ A L + R A++GDVL G Y+A GG + ++G+ +TY R Sbjct: 317 GADLGATLGGLPAPVLRPLVARAGDVLSFARPGQGARAYLAVHGGYDLPMVMGNQSTYLR 376 Query: 135 AKF----GRPLKPGDKLKLGYAILTGKAGK------------FLPEELVPRYGNDVRVTL 178 + F GR L GD++ L + A +L L + +R+ Sbjct: 377 SAFGGYHGRALAKGDQVGLRRPLADDAARLDALAQQLWQLRFYLAATLSSPPRDVLRILP 436 Query: 179 GPNLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPLGSIQVP 238 GP+ F + L + + +SDRMGYRL+GP++ SE ++++E G++QVP Sbjct: 437 GPHWAAFDAASRQALLDQAFRIGAQSDRMGYRLEGPRLRLSEP-REMLSEATCFGTVQVP 495 Query: 239 ANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGVKESQELLRARER 298 A+G PIV++AD QTTGGY P +AQ PG+ +RF I + ++Q L ARE Sbjct: 496 ADGAPIVLMADRQTTGGY-----------PKLAQAMPGQALRFALIELAQAQRLDAARE- 543 Query: 299 TMKALRKALIGEGNLFRIKLKNFE 322 A L G+ + R L++F+ Sbjct: 544 ---AAFAQLTGQLDALRGLLRDFQ 564 >sp|P75745|YBGK_ECOLI HYPOTHETICAL 34.4 KDA PROTEIN IN PHRB-NEI INTERGENIC REGION >gi|7429614|pir||G64806 ybgK protein - Escherichia coli >gi|1786930|gb|AAC73806.1| (AE000174) putative carboxylase [Escherichia coli K12] >gi|4062308|dbj|BAA35376.1| (D90710) Hypothetical protein HI1730 [Escherichia coli] Length = 310 Score = 161 bits (403), Expect = 1e-38 Identities = 99/313 (31%), Positives = 169/313 (53%), Gaps = 9/313 (2%) Query: 3 MIEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGP 62 M++I+ A +QD GR G+ + G+ G +D + R+AN LVGN +AP LE TL Sbjct: 1 MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQL 60 Query: 63 TIRFHSSSVFAITG-DVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGIE 121 T+ F + FA+TG +A L+D + K+G L + + GM Y+A AGGI+ Sbjct: 61 TVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGID 120 Query: 122 CQKILGSCATYSRAKF----GRPLKPGDKLKLGYAILTGKAGKFLPEELVPRYGNDVRVT 177 ++GSC+T + GR LK GD+L +G + + + + L +GN +R Sbjct: 121 VPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLL---WGNRIRAL 177 Query: 178 LGPNLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPLGSIQV 237 GP F + + F + + ++ +S+RMGYRL G ++ + ++++ + G +QV Sbjct: 178 PGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRT-TDRELLSHGLLPGVVQV 236 Query: 238 PANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGVKESQELLRARE 297 P NG+PIV++ D+QTTGGY +I + D+ +AQ G+ + F + ++E+ + + ++ Sbjct: 237 PHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQ 296 Query: 298 RTMKALRKALIGE 310 R + L L E Sbjct: 297 RYFEQLAWRLHNE 309 >pir||C83585 conserved hypothetical protein PA0496 [imported] - Pseudomonas aeruginosa (strain PAO1) >gi|9946359|gb|AAG03885.1|AE004486_14 (AE004486) conserved hypothetical protein [Pseudomonas aeruginosa] Length = 325 Score = 161 bits (403), Expect = 1e-38 Identities = 107/308 (34%), Positives = 154/308 (49%), Gaps = 17/308 (5%) Query: 4 IEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGPT 63 I++L +QD GR G+ G+P SG +D+ + R AN LVGN A +LE L GP Sbjct: 3 IKVLKPGLATSVQDAGREGHYHLGIPPSGALDQYALRAANLLVGNAPTAAVLECALLGPQ 62 Query: 64 IRFHSSSVFAITG-DVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGIEC 122 + F ++ A+ G + L ++ S+ ++G VL +++G GY+A GGI Sbjct: 63 LEFQRDALVAVCGARMTPRLEGAEMPLDTSFRVRAGQVLGFDFIRAGARGYLAIDGGIAV 122 Query: 123 QKILGSCATYSRAKF----GRPLKPGDKLKLGYAILTGKAGKFLPEELVPRYGNDV--RV 176 ++LGS +TY GR L GD L LG A + G LP L G +V RV Sbjct: 123 PEVLGSRSTYGLGAIGGLQGRRLAEGDLLPLGPASPSAVEGLALPRSLQVEVGGEVSLRV 182 Query: 177 TLGPNLENFTKHGIETFLTAEYVVTQESDRMGYRLDG-------PKIEHSEKGAD---IV 226 G + T +E F + V E+DR GYR G P+ + G+D IV Sbjct: 183 VPGLYVHRLTPDAVERFFAETWTVGSEADRTGYRFKGGTALRFEPREQPFGAGSDPSNIV 242 Query: 227 TEPIPLGSIQVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGV 286 P+GSIQVP +PIV+ D+ + GGYA +G V DL +AQ +P +K RF + + Sbjct: 243 DACYPIGSIQVPGGLEPIVLHRDAVSGGGYATLGTVISPDLNRLAQMQPNQKGRFVAVSL 302 Query: 287 KESQELLR 294 +E E R Sbjct: 303 EEGLEARR 310 >prf||2009329A urea amidolyase [Pichia jadinii] Length = 1830 Score = 161 bits (402), Expect = 1e-38 Identities = 106/326 (32%), Positives = 172/326 (52%), Gaps = 27/326 (8%) Query: 5 EILSAPSPLLIQDL-GRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGPT 63 EIL+ + +QD GR GY + GVP SG MD +S RLAN +VGN + AP +E TL+GP+ Sbjct: 1076 EILTPGAYTTVQDYPGRTGYWRIGVPPSGPMDSLSFRLANRIVGNANTAPAIEVTLNGPS 1135 Query: 64 IRFHSSSVFAIT-GDVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGIEC 122 + FH+ +V A+T G+V+ +ND + W K G+ L +G L G Y+A GG++ Sbjct: 1136 MLFHADAVVAVTGGEVEVKVNDTVVNQWEPVVVKRGEKLSIGKLTKGCRAYLAIRGGVDV 1195 Query: 123 QKILGSCATYSRAKF----GRPLKPGDKLKLGYAILTGKA-------GKFLPEELVPRYG 171 + LGS +T++ GR LK GD L LG L LP++L+P Sbjct: 1196 SEYLGSRSTFALGNMGGYNGRVLKVGDVLFLGQTYLPSNTLPAPISEPTALPKDLIPTLE 1255 Query: 172 N---DVRVTLGP--NLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSE-KGADI 225 + V VT GP + + F + +E F +A++ V S+R G RL GPK + + G + Sbjct: 1256 SKEWTVGVTCGPHGSPDFFKQEAVEEFFSAKWKVHYNSNRFGVRLIGPKPKWARLDGGEA 1315 Query: 226 VTEP-------IPLGSIQVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEK 278 P LG+I + +P+++ D + GG+ VV+ ++ I Q +PG+ Sbjct: 1316 GLHPSNQHDYVYSLGAINFTGD-EPVILTCDGPSLGGFVCEAVVADAEMWKIGQVKPGDL 1374 Query: 279 VRFREIGVKESQELLRARERTMKALR 304 ++F I + +++L ++ T++ + Sbjct: 1375 IQFVPISYQTARDLKIKQDSTIETFK 1400 >emb|CAB56673.1| (AL121596) hypothetical protein SCF51A.21 [Streptomyces coelicolor A3(2)] Length = 285 Score = 149 bits (373), Expect = 4e-35 Identities = 98/273 (35%), Positives = 139/273 (50%), Gaps = 12/273 (4%) Query: 15 IQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGPTIRFHSSSVFAI 74 +QD GR G+ GVPRSG +D + RLAN L+GN D +LE TL+G +R + Sbjct: 16 VQDAGRPGHAHLGVPRSGALDAPAMRLANRLLGNDPDTAVLETTLTGCALRPDRDVAAVV 75 Query: 75 TGDVDAYLNDVKIEPWRS-YWAKSGDVLKVGTLKSGMYGYIAFAGGIECQKILGSCATYS 133 G A D + W + +G VL VGT G+ Y+A AGGI + +LGS +T Sbjct: 76 GGAPCAVTVDGRPAAWGAPVRVPAGSVLDVGTATGGVRSYVAVAGGIAAEPVLGSRSTDL 135 Query: 134 RAKFG-RPLKPGDKLKLGYAILTGKAGKFLPEELVPRYGNDVRVTL----GPNLENFTKH 188 + G PL+ GD L +G A P P G + L GP + FT Sbjct: 136 LSGLGPTPLRDGDVLAVG-----APARPAPPPVAAPWPGPPAELVLPVRPGPRADWFTPA 190 Query: 189 GIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPLGSIQVPANGKPIVMLA 248 + T +A Y V+ S+R+G R +GP ++ G ++ +E + LG++QVP +G+P++ L Sbjct: 191 ALRTLTSAAYRVSPHSNRIGLRTEGPPLQRLSTG-ELPSEGMVLGAVQVPPDGRPVIFLH 249 Query: 249 DSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRF 281 D TTGGY + VV L AQ G VRF Sbjct: 250 DHPTTGGYPVVAVVPEPALAAAAQAVAGTPVRF 282 >pir||B70627 hypothetical protein Rv0263c - Mycobacterium tuberculosis (strain H37RV) >gi|1850108|emb|CAB06690.1| (Z86089) hypothetical protein Rv0263c [Mycobacterium tuberculosis] Length = 300 Score = 141 bits (353), Expect = 8e-33 Identities = 96/288 (33%), Positives = 145/288 (50%), Gaps = 15/288 (5%) Query: 1 MGMIEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLS 60 M +EIL + L++DLGR G GV RSG D S LAN LV NPDD +E T Sbjct: 1 MTTLEILRSGPLALVEDLGRAGLAHLGVGRSGAADRRSHTLANRLVANPDDWATVEVTFG 60 Query: 61 GPTIRFHSSSV-FAITG-DVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAG 118 G + R V A+TG D D +N + + + + G V+ +GT ++G+ Y+A G Sbjct: 61 GFSARVRGGDVDIAVTGADTDPTVNGIMVGTNSIHHVRDGQVISLGTPRAGLRTYLAVRG 120 Query: 119 GIECQKILGSCATYSRAKFG-RPLKPGDKLKLG-----YAILTGKAGKFLPEELVPRYGN 172 G+ + +LGS + + G PL+ GD L +G Y L + E LV Sbjct: 121 GVCVEPVLGSRSYDVMSAIGPSPLRAGDVLPVGEHTDDYPELDQAPVAAIEEHLV----- 175 Query: 173 DVRVTLGPNLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPL 232 ++RV GP + + + ++ + SDR+G RL G ++H + E + Sbjct: 176 ELRVVPGPRDDWLVDP--DALVHTIWMASNRSDRVGMRLQGRPLQHRWPDRQLPGEGVTR 233 Query: 233 GSIQVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVR 280 G+IQVP NG P+++ D TG Y +GV++ D+ +AQ RPG+ VR Sbjct: 234 GAIQVPPNGLPVILGPDHPITGSYPVVGVITDEDIDKVAQIRPGQYVR 281 >pir||E83382 hypothetical protein PA2110 [imported] - Pseudomonas aeruginosa (strain PAO1) >gi|9948124|gb|AAG05498.1|AE004638_8 (AE004638) hypothetical protein [Pseudomonas aeruginosa] Length = 313 Score = 140 bits (350), Expect = 2e-32 Identities = 95/306 (31%), Positives = 156/306 (50%), Gaps = 14/306 (4%) Query: 2 GMIEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSG 61 G + + + + +QD GR G GV + G +D +S AN+L+GNP DA ++E L G Sbjct: 7 GGLRVCQSTPLVQLQDRGRFGCRHLGVTQGGALDWLSMGWANWLLGNPLDAAVIEIALGG 66 Query: 62 PTIRFHSSSVFAITG-DVDAYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGI 120 + A+ G D+ A L+ + W ++ + G L + G Y+A GG Sbjct: 67 FVADCRADGWLALAGGDLGATLDGQPLPAWGAFAVRGGQRLAFAHPRQGARAYLAAPGGF 126 Query: 121 ECQKILGSCATYSRAKFGRPLKPGDKLKLGYAI---LTGKAGKFLP---EELVPRYGND- 173 ++ LGS AT +R G P G L G ++ G + LP E ++ G Sbjct: 127 AGERQLGSLATVAREGLGGPRADGKALAAGDSLGWLADGARPRALPLPSERIMDCTGEAR 186 Query: 174 VRVTLGPNLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPIPLG 233 + + LG + +F + ++ V +DRMG RL GP++E ++ +++E I LG Sbjct: 187 LELILGAQIGDFPAMSLFDAFNGDWQVDTRADRMGVRLLGPRLECRQQS--MISEGIALG 244 Query: 234 SIQVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRF----REIGVKES 289 ++QVP +G+PIV+L D QT GGY ++G ++ + L +AQ PG++VR +E +E Sbjct: 245 AVQVPPDGQPIVLLNDRQTIGGYPRLGALAPLALARLAQCLPGQRVRLLPTVQEAAHREH 304 Query: 290 QELLRA 295 + LL A Sbjct: 305 RRLLAA 310 >gb|AAC41643.1| (M64926) urea amidolyase [Saccharomyces cerevisiae] Length = 1835 Score = 138 bits (345), Expect = 7e-32 Identities = 108/330 (32%), Positives = 159/330 (47%), Gaps = 38/330 (11%) Query: 4 IEILSAPSPLLIQDL-GRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGP 62 IEI + IQD GR GY + GVP SG MD S RLAN +VGN P +E TL+GP Sbjct: 1080 IEITLPGAHTSIQDYPGRVGYWRIGVPPSGPMDAYSFRLANRIVGNDYRTPAIEVTLTGP 1139 Query: 63 TIRFHSSSVFAITGDVD-AYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGIE 121 +I FH +V AITG L+ +I + K G L +G L SG Y+ GGI+ Sbjct: 1140 SIVFHCETVIAITGGTALCTLDGQEIPQHKPVEVKRGSTLSIGKLTSGCRAYLGIRGGID 1199 Query: 122 CQKILGSCATYSRAKF----GRPLKPGDKLKLGYAILTGKAGKF-------LPEELVPRY 170 K LGS +T++ GR LK GD L L + + K +P+ L+P+ Sbjct: 1200 VPKYLGSYSTFTLGNVGGYNGRVLKLGDVLFLP----SNEENKSVECLPQNIPQSLIPQI 1255 Query: 171 GND----VRVTLGP--NLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIE------- 217 + VT GP + + F IE F + ++ V S+R G RL GPK + Sbjct: 1256 SETKEWRIGVTCGPHGSPDFFKPESIEEFFSEKWKVHYNSNRFGVRLIGPKPKWARSNGG 1315 Query: 218 ----HSEKGADIVTEPIPLGSIQVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQK 273 H D V LG+I + +P+++ D + GG+ VV +L + Q Sbjct: 1316 EGGMHPSNTHDYV---YSLGAINFTGD-EPVIITCDGPSLGGFVCQAVVPEAELWKVGQV 1371 Query: 274 RPGEKVRFREIGVKESQELLRARERTMKAL 303 +PG+ ++F + + S+ L ++E +K+L Sbjct: 1372 KPGDSIQFVPLSYESSRSLKESQEVAIKSL 1401 >gi|6319685 Urea amidolyase (contains urea carboxylase and allophanate hydrolase); Dur1,2p [Saccharomyces cerevisiae] >gi|585072|sp|P32528|DUR1_YEAST UREA AMIDOLYASE [INCLUDES: UREA CARBOXYLASE ; ALLOPHANATE HYDROLASE ] >gi|626973|pir||S46082 urea carboxylase (EC 6.3.4.6) - yeast (Saccharomyces cerevisiae) >gi|536588|emb|CAA85172.1| (Z36077) ORF YBR208c [Saccharomyces cerevisiae] Length = 1835 Score = 137 bits (342), Expect = 2e-31 Identities = 107/330 (32%), Positives = 159/330 (47%), Gaps = 38/330 (11%) Query: 4 IEILSAPSPLLIQDL-GRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGP 62 IEI + IQD GR GY + GVP SG MD S RLAN +VGN P +E TL+GP Sbjct: 1080 IEITLPGAHTSIQDYPGRVGYWRIGVPPSGPMDAYSFRLANRIVGNDYRTPAIEVTLTGP 1139 Query: 63 TIRFHSSSVFAITGDVD-AYLNDVKIEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAGGIE 121 +I FH +V AITG L+ +I + K G L +G L SG Y+ GGI+ Sbjct: 1140 SIVFHCETVIAITGGTALCTLDGQEIPQHKPVEVKRGSTLSIGKLTSGCRAYLGIRGGID 1199 Query: 122 CQKILGSCATYSRAKF----GRPLKPGDKLKLGYAILTGKAGKF-------LPEELVPRY 170 K LGS +T++ GR LK GD L L + + K +P+ L+P+ Sbjct: 1200 VPKYLGSYSTFTLGNVGGYNGRVLKLGDVLFLP----SNEENKSVECLPQNIPQSLIPQI 1255 Query: 171 GND----VRVTLGP--NLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIE------- 217 + VT GP + + F IE F + ++ V S+R G RL GPK + Sbjct: 1256 SETKEWRIGVTCGPHGSPDFFKPESIEEFFSEKWKVHYNSNRFGVRLIGPKPKWARSNGG 1315 Query: 218 ----HSEKGADIVTEPIPLGSIQVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQK 273 H D V LG+I + +P+++ D + GG+ VV +L + Q Sbjct: 1316 EGGMHPSNTHDYV---YSLGAINFTGD-EPVIITCDGPSLGGFVCQAVVPEAELWKVGQV 1371 Query: 274 RPGEKVRFREIGVKESQELLRARERTMKAL 303 +PG+ ++F + + S+ L +++ +K+L Sbjct: 1372 KPGDSIQFVPLSYESSRSLKESQDVAIKSL 1401 >pir||A83083 hypothetical protein PA4509 [imported] - Pseudomonas aeruginosa (strain PAO1) >gi|9950749|gb|AAG07897.1|AE004864_9 (AE004864) hypothetical protein [Pseudomonas aeruginosa] Length = 309 Score = 131 bits (325), Expect = 2e-29 Identities = 98/305 (32%), Positives = 148/305 (48%), Gaps = 14/305 (4%) Query: 1 MGMIEILSAPSPLLIQDLGRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLS 60 M + ++ A L+QD GRRG+ GV G +D +A AN L+GNP APLLE Sbjct: 1 MNGLRVVKAGPQSLLQDDGRRGWQHLGVSPGGPLDRQAAAWANRLLGNPWGAPLLEIAFG 60 Query: 61 GPTIRFHSSSVF-AITGDVDAYLNDVK-IEPWRSYWAKSGDVLKVGTLKSGMYGYIAFAG 118 G + + + A+TG A D + PW + + G +++G ++G Y+A AG Sbjct: 61 GLVLECTVEATWLALTGARLALTVDGRECLPWSRFRVRRGQRIELGFAEAGQRAYLACAG 120 Query: 119 GIECQKILGSCATYSRAKFGRPLKPGDKLKLGYAILTGKAGKFLP-EELVP-------RY 170 G + +LGS A R G G L G + +AG P + VP R Sbjct: 121 GFRAKPVLGSIACQVRDGLGGLRGDGRILAEGDCLPCVEAGAACPWDASVPWRFQPDYRQ 180 Query: 171 GNDVRVTLGPNLENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIEHSEKGADIVTEPI 230 +RV LG + F F + + ++ SDRMG RL G + + + ++ + Sbjct: 181 QRPLRVLLGGDAAAFDAASRRAFFASAWRISPRSDRMGVRLAGEPLRGASRAW---SQGV 237 Query: 231 PLGSIQVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFREIGVKESQ 290 G+IQVP +G+PIV++AD Q+ GGY +G V +DL +AQ +V F E + Q Sbjct: 238 VEGAIQVPPDGQPIVLMADRQSMGGYPLLGFVHPLDLSRLAQSPAHSEVTFVESDLATQQ 297 Query: 291 -ELLR 294 +LLR Sbjct: 298 ADLLR 302 >emb|CAB48407.1| (AJ243652) urea amidolyase homologue [Pseudomonas fluorescens] Length = 1213 Score = 125 bits (311), Expect = 7e-28 Identities = 101/310 (32%), Positives = 152/310 (48%), Gaps = 26/310 (8%) Query: 4 IEILSAPSPLLIQDL-GRRGYLKYGVPRSGVMDEVSARLANYLVGNPDDAPLLEFTLSGP 62 +E+LS + +QD GR GY GVP SG MD S RL N L+GN + A LE T++G Sbjct: 455 VEVLSPGTQTSVQDYPGRLGYWAVGVPPSGPMDSHSLRLGNRLLGNEEGAAALEITMNGA 514 Query: 63 TIRFHSSSVFAITGDVDAYLNDVKIEPWRSYWA-KSGDVLKVGTLK-SGMYGYIAFAGGI 120 +RF+ + A+TG V A D + P + + +G L +GT+ +G Y+ GG+ Sbjct: 515 AVRFNCDARVAVTGAVIALTLDGEAVPMNTPLSIAAGSTLTIGTIAGAGARSYLCLQGGV 574 Query: 121 ECQKILGSCATYSRAKF----GRPLKPGDKLKLGYAILTGKAGKFLPEELVP----RYGN 172 + LGS +T++ +F GR L GD L L L A LP++ P Sbjct: 575 QVPDYLGSKSTFTLGQFGGHGGRALCTGDVLHL--TELDEHAA--LPQQNAPILELPSER 630 Query: 173 DVRVTLGPN--LENFTKHGIETFLTAEYVVTQESDRMGYRLDGPKIE-----HSEKG--- 222 +RV GP+ E FT+ I+TF + V S R G RL GPK E E G Sbjct: 631 QIRVIYGPHGAPEYFTERYIQTFFDTAWEVHFNSSRTGVRLIGPKPEWVRADGGEAGLHP 690 Query: 223 ADIVTEPIPLGSIQVPANGKPIVMLADSQTTGGYAKIGVVSRVDLPTIAQKRPGEKVRFR 282 ++I P +G++ + P+++ D + GG+ V DL + Q + G+KVRF Sbjct: 691 SNIHDNPYAIGAVDFTGD-MPVILGPDGPSLGGFVCPVTVIEADLWQLGQLKAGDKVRFV 749 Query: 283 EIGVKESQEL 292 + + ++ L Sbjct: 750 PVDISTARSL 759 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.318 0.140 0.406 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 128087442 Number of Sequences: 2977 Number of extensions: 5726733 Number of successful extensions: 10604 Number of sequences better than 1.0e-10: 18 Number of HSP's better than 0.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 10549 Number of HSP's gapped (non-prelim): 19 length of query: 331 length of database: 189,106,746 effective HSP length: 55 effective length of query: 276 effective length of database: 156,189,961 effective search space: 43108429236 effective search space used: 43108429236 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 165 (68.7 bits)