BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1715 (PAB1715) DE:Hypothetical protein
(102 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75074 hypothetical protein PAB1715 - Pyrococcus abyssi (st... 203 6e-52
pir||H71090 hypothetical protein PH0989 - Pyrococcus horikoshii ... 188 1e-47
gi|11499906 A. fulgidus predicted coding region AF2325 [Archaeog... 109 8e-24
gb|AAK42530.1| Conserved hypothetical protein [Sulfolobus solfat... 86 8e-17
emb|CAC11930.1| (AL445065) conserved hypothetical protein [Therm... 82 2e-15
gb|AAG20544.1| (AE005125) Vng2470c [Halobacterium sp. NRC-1] 71 4e-12
>pir||E75074 hypothetical protein PAB1715 - Pyrococcus abyssi (strain Orsay)
>gi|5458410|emb|CAB49898.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 102
Score = 203 bits (510), Expect = 6e-52
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MSGKIYVKIYRVQGEVLLAACDEELLGKTFREGELKLEVKERFYKGELVEVDELENLLEQ 60
MSGKIYVKIYRVQGEVLLAACDEELLGKTFREGELKLEVKERFYKGELVEVDELENLLEQ
Sbjct: 1 MSGKIYVKIYRVQGEVLLAACDEELLGKTFREGELKLEVKERFYKGELVEVDELENLLEQ 60
Query: 61 ATIANLTGERVVKKAIELGYIDEGRVLRIQGVPHAQMAKLLW 102
ATIANLTGERVVKKAIELGYIDEGRVLRIQGVPHAQMAKLLW
Sbjct: 61 ATIANLTGERVVKKAIELGYIDEGRVLRIQGVPHAQMAKLLW 102
>pir||H71090 hypothetical protein PH0989 - Pyrococcus horikoshii
>gi|3257403|dbj|BAA30086.1| (AP000004) 102aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 102
Score = 188 bits (473), Expect = 1e-47
Identities = 92/102 (90%), Positives = 98/102 (95%)
Query: 1 MSGKIYVKIYRVQGEVLLAACDEELLGKTFREGELKLEVKERFYKGELVEVDELENLLEQ 60
MSGKIYVKIYRVQGEVLLAACDEELLGKTFREGELKLEVKERFYKGELV+V+ L LE+
Sbjct: 1 MSGKIYVKIYRVQGEVLLAACDEELLGKTFREGELKLEVKERFYKGELVDVESLGKFLEE 60
Query: 61 ATIANLTGERVVKKAIELGYIDEGRVLRIQGVPHAQMAKLLW 102
ATIANLTGERV+KKAIELGYIDEGRVLRIQGVPHAQMAK++W
Sbjct: 61 ATIANLTGERVIKKAIELGYIDEGRVLRIQGVPHAQMAKMMW 102
>gi|11499906 A. fulgidus predicted coding region AF2325 [Archaeoglobus
fulgidus] >gi|7483804|pir||E69540 hypothetical protein
AF2325 - Archaeoglobus fulgidus
>gi|2648209|gb|AAB88946.1| (AE000944) A. fulgidus
predicted coding region AF2325 [Archaeoglobus fulgidus]
Length = 94
Score = 109 bits (270), Expect = 8e-24
Identities = 51/91 (56%), Positives = 69/91 (75%)
Query: 7 VKIYRVQGEVLLAACDEELLGKTFREGELKLEVKERFYKGELVEVDELENLLEQATIANL 66
+++YRV+GEVL+A CD +++GKTFREG+LK+EVKE FY E V +E++ L ATIAN+
Sbjct: 1 MRVYRVKGEVLVAVCDSDIVGKTFREGDLKIEVKESFYGSEEVGEEEVKRALRNATIANI 60
Query: 67 TGERVVKKAIELGYIDEGRVLRIQGVPHAQM 97
TG++ V+ A +G ID RVL I G PHAQM
Sbjct: 61 TGKKAVELAARIGIIDRNRVLYIGGCPHAQM 91
>gb|AAK42530.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 111
Score = 86.2 bits (210), Expect = 8e-17
Identities = 39/94 (41%), Positives = 62/94 (65%)
Query: 4 KIYVKIYRVQGEVLLAACDEELLGKTFREGELKLEVKERFYKGELVEVDELENLLEQATI 63
K+ + I R QG L+ C EELLGK FREGE+ L++ E+FY GE VE+D +L+++AT+
Sbjct: 15 KVLLNIIRAQGMTLINICQEELLGKVFREGEIILDISEKFYGGESVELDYALSLIDEATV 74
Query: 64 ANLTGERVVKKAIELGYIDEGRVLRIQGVPHAQM 97
++ G V++AI G + + V+ + G+ AQ+
Sbjct: 75 MSIVGNYAVEEAIRRGLVHKDSVINVAGIKFAQV 108
>emb|CAC11930.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 100
Score = 81.5 bits (198), Expect = 2e-15
Identities = 46/98 (46%), Positives = 65/98 (65%), Gaps = 2/98 (2%)
Query: 4 KIYVKIYRVQGEVLLAACDEELLGKTFREGELKLEVKERFYKGELVEVDEL-ENLLEQAT 62
KI +KI V+GE+LLAA D +++GK FRE L +EV FY GE+ DE+ + + T
Sbjct: 2 KIVMKISEVRGEILLAAADADIVGKKFREKNLHIEVYPSFY-GEVRVTDEMFISSMNICT 60
Query: 63 IANLTGERVVKKAIELGYIDEGRVLRIQGVPHAQMAKL 100
IANL GE + AI+ G+I++ +L IQ VP+AQ AK+
Sbjct: 61 IANLVGEYTIGVAIDAGFIEKDNILYIQKVPYAQYAKI 98
>gb|AAG20544.1| (AE005125) Vng2470c [Halobacterium sp. NRC-1]
Length = 102
Score = 70.6 bits (170), Expect = 4e-12
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 16 VLLAACDEELLGKTFREGELKLEVKERFYKGELVEVDELENLLEQATIANLTGERVVKKA 75
+L+AACD ++LG+T+ G + V E FY GE + D + L +ATI N+ G+ V A
Sbjct: 18 LLVAACDRDVLGETYDNGGTEFTVTESFYDGEAADADAVRAALARATIGNVVGDTAVGIA 77
Query: 76 IELGYIDEGRVLRIQGVPHAQ 96
I+ G+++ VL ++G HAQ
Sbjct: 78 IDAGHVEAANVLELEGTVHAQ 98
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33256761
Number of Sequences: 2977
Number of extensions: 1182578
Number of successful extensions: 3673
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3667
Number of HSP's gapped (non-prelim): 6
length of query: 102
length of database: 189,106,746
effective HSP length: 54
effective length of query: 48
effective length of database: 156,788,448
effective search space: 7525845504
effective search space used: 7525845504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 159 (66.3 bits)