BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1716 (PAB1716) DE:Hypothetical protein
(383 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75074 hypothetical protein PAB1716 - Pyrococcus abyssi (st... 781 0.0
pir||A71091 hypothetical protein PH0990 - Pyrococcus horikoshii ... 731 0.0
pir||H64505 hypothetical protein MJ1650 - Methanococcus jannasch... 221 9e-57
pir||A69103 conserved hypothetical protein MTH1768 - Methanobact... 186 3e-46
pir||E72665 hypothetical protein APE0748 - Aeropyrum pernix (str... 100 3e-20
gi|11499554 conserved hypothetical protein [Archaeoglobus fulgid... 99 1e-19
gb|AAG20548.1| (AE005125) Vng2474c [Halobacterium sp. NRC-1] 97 4e-19
gb|AAK42531.1| Conserved hypothetical protein [Sulfolobus solfat... 78 2e-13
emb|CAC12117.1| (AL445066) conserved hypothetical protein [Therm... 77 4e-13
>pir||D75074 hypothetical protein PAB1716 - Pyrococcus abyssi (strain Orsay)
>gi|5458409|emb|CAB49897.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 383
Score = 781 bits (1994), Expect = 0.0
Identities = 383/383 (100%), Positives = 383/383 (100%)
Query: 1 MRFCYRCGISEEEGGPLINGLCQVCFRKENPILVLPQEVNTELCQNCGSYKKRGVWVDPK 60
MRFCYRCGISEEEGGPLINGLCQVCFRKENPILVLPQEVNTELCQNCGSYKKRGVWVDPK
Sbjct: 1 MRFCYRCGISEEEGGPLINGLCQVCFRKENPILVLPQEVNTELCQNCGSYKKRGVWVDPK 60
Query: 61 NYELEALIFEVAENALLETLEDNLKVKEFEIVDWEELDEIREIPVGKAFVAYRVADYHIE 120
NYELEALIFEVAENALLETLEDNLKVKEFEIVDWEELDEIREIPVGKAFVAYRVADYHIE
Sbjct: 61 NYELEALIFEVAENALLETLEDNLKVKEFEIVDWEELDEIREIPVGKAFVAYRVADYHIE 120
Query: 121 YFPAIVIYEVRAKARIHELQIEPHDETSTVTVYIRQTVCPRCQKFLAGYYEAILQVRVED 180
YFPAIVIYEVRAKARIHELQIEPHDETSTVTVYIRQTVCPRCQKFLAGYYEAILQVRVED
Sbjct: 121 YFPAIVIYEVRAKARIHELQIEPHDETSTVTVYIRQTVCPRCQKFLAGYYEAILQVRVED 180
Query: 181 REFTKEEREEITRLVQEKVDEIMKRDRMGFIQDTIEKEEGIDFYMGSTSAARKLANAIRE 240
REFTKEEREEITRLVQEKVDEIMKRDRMGFIQDTIEKEEGIDFYMGSTSAARKLANAIRE
Sbjct: 181 REFTKEEREEITRLVQEKVDEIMKRDRMGFIQDTIEKEEGIDFYMGSTSAARKLANAIRE 240
Query: 241 KYGGTISEAYELVGLDRQTSKEVYRTSVTIRLPKFRKGDIVEDRHGRVYEVEDVSGKGMR 300
KYGGTISEAYELVGLDRQTSKEVYRTSVTIRLPKFRKGDIVEDRHGRVYEVEDVSGKGMR
Sbjct: 241 KYGGTISEAYELVGLDRQTSKEVYRTSVTIRLPKFRKGDIVEDRHGRVYEVEDVSGKGMR 300
Query: 301 LKNLETWESEHYDWKTIKREKVDLADYEEKKAMLVSKTPSEAQFMDMETYETFEVKKPSD 360
LKNLETWESEHYDWKTIKREKVDLADYEEKKAMLVSKTPSEAQFMDMETYETFEVKKPSD
Sbjct: 301 LKNLETWESEHYDWKTIKREKVDLADYEEKKAMLVSKTPSEAQFMDMETYETFEVKKPSD 360
Query: 361 ELAEGEIYSIVKVKGRMYVKGRD 383
ELAEGEIYSIVKVKGRMYVKGRD
Sbjct: 361 ELAEGEIYSIVKVKGRMYVKGRD 383
>pir||A71091 hypothetical protein PH0990 - Pyrococcus horikoshii
>gi|3257404|dbj|BAA30087.1| (AP000004) 389aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 389
Score = 731 bits (1867), Expect = 0.0
Identities = 346/380 (91%), Positives = 372/380 (97%)
Query: 1 MRFCYRCGISEEEGGPLINGLCQVCFRKENPILVLPQEVNTELCQNCGSYKKRGVWVDPK 60
MRFCYRCGISEEEGGPLINGLCQVCFRKENP+L+LP E+NTELCQNCGSYKKRGVWVDPK
Sbjct: 5 MRFCYRCGISEEEGGPLINGLCQVCFRKENPVLLLPSEINTELCQNCGSYKKRGVWVDPK 64
Query: 61 NYELEALIFEVAENALLETLEDNLKVKEFEIVDWEELDEIREIPVGKAFVAYRVADYHIE 120
NYELEALIFEVAENALLE LEDNLKVK+FE+V+WEELDEI EIPVGKAFVAYRV DYHIE
Sbjct: 65 NYELEALIFEVAENALLEALEDNLKVKDFEVVNWEELDEISEIPVGKAFVAYRVVDYHIE 124
Query: 121 YFPAIVIYEVRAKARIHELQIEPHDETSTVTVYIRQTVCPRCQKFLAGYYEAILQVRVED 180
YFPAIVIYEVR+KARIHELQ+EPHDE +TVTVY+RQTVCPRCQKFLAGYYEAILQVRVE
Sbjct: 125 YFPAIVIYEVRSKARIHELQVEPHDERTTVTVYVRQTVCPRCQKFLAGYYEAILQVRVEG 184
Query: 181 REFTKEEREEITRLVQEKVDEIMKRDRMGFIQDTIEKEEGIDFYMGSTSAARKLANAIRE 240
REFTKEEREEIT+LVQEKVDEIMKRDRMGFIQDTIEKEEGIDFYMGSTSAARKLANAIRE
Sbjct: 185 REFTKEEREEITKLVQEKVDEIMKRDRMGFIQDTIEKEEGIDFYMGSTSAARKLANAIRE 244
Query: 241 KYGGTISEAYELVGLDRQTSKEVYRTSVTIRLPKFRKGDIVEDRHGRVYEVEDVSGKGMR 300
KYGGTISEAYELVG+DRQTS+EVYRTSVT+RLPKFRKGD+VEDR+GRVYEVE+V+GKGMR
Sbjct: 245 KYGGTISEAYELVGMDRQTSREVYRTSVTVRLPKFRKGDVVEDRYGRVYEVEEVNGKGMR 304
Query: 301 LKNLETWESEHYDWKTIKREKVDLADYEEKKAMLVSKTPSEAQFMDMETYETFEVKKPSD 360
LKNLETW+SEHYDWKTIKRE+VDLA+YEEKKAMLVSKTPSE QFMDMETYETFEVKKP+D
Sbjct: 305 LKNLETWKSEHYDWKTIKRERVDLANYEEKKAMLVSKTPSEVQFMDMETYETFEVKKPTD 364
Query: 361 ELAEGEIYSIVKVKGRMYVK 380
EL EGE+Y++V+VKGRMYVK
Sbjct: 365 ELKEGEVYTVVRVKGRMYVK 384
>pir||H64505 hypothetical protein MJ1650 - Methanococcus jannaschii
>gi|1500551|gb|AAB99671.1| (U67605) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 384
Score = 221 bits (558), Expect = 9e-57
Identities = 131/388 (33%), Positives = 216/388 (54%), Gaps = 35/388 (9%)
Query: 4 CYRCGISEEEGGPLINGLCQVCFRKENPILVLPQEVNTELCQNCGSYKKRGVWVDPKNYE 63
CYRCG +E LI+GLC +C+ +E+P++ +P V E+C CGSYK++ +W PK+ E
Sbjct: 22 CYRCGAEDE----LIDGLCPICYAQEHPLIEVPDRVEIEVCHMCGSYKRK-IWQTPKSEE 76
Query: 64 LEALIFEVAENALLETLEDNLKVKEFEIVDWEELDEIREIPVGKAFVAYRVADYHIEYFP 123
++ E+A A + ++ K+ +V+ E E+ ++P GK
Sbjct: 77 AFEILNEIAYYATKDAIK-----KKSVMVEVEIYPEVTQLPGGKRS-------------K 118
Query: 124 AIVIYEVRAKARIHELQIEPHDET--STVTVYIRQTVCPRCQKFLAGYYEAILQVRVEDR 181
I+ + A+ R L E D T + V++R CPRC +F++ YYEA LQVR +R
Sbjct: 119 LIIPVHIVARGR---LPGEKEDRTYEKDIEVHLRMVQCPRCSRFMSNYYEATLQVRAMNR 175
Query: 182 EFTKEEREEITRLVQEKVDEIMKRDRMGFIQDTIEKEEGIDFYMGSTSAARKLANAIREK 241
T+EEREE+ V+E++ + +K+DRM FI I ++EG+D+ +GS AAR +A I+EK
Sbjct: 176 YLTEEEREELDNFVREELAKRLKKDRMAFIAKFIPQKEGLDYQLGSVGAARNVAQRIKEK 235
Query: 242 YGGTISEAYELVGLDRQTSKEVYRTSVTIRLPKFRKGDIVEDRHGRVYEVEDVSGKGMRL 301
YGG I+E LVG+DR + KE+YR +V++R+P+++ GD+VE + + Y V ++ + +
Sbjct: 236 YGGKITETATLVGVDRDSGKELYRVTVSVRVPEYKVGDVVEYK-DKYYLVTAITEDKVYM 294
Query: 302 KNLE-TWESEHYDWKTIKREKVDLADYEEKKAMLVSKTPSEAQFMDMETYETFEVKKPSD 360
K+++ E W ++E +E V T MD ++YE +E D
Sbjct: 295 KSIDYKREKIGLAWHIAEKETKMAKKKDELDTATVIATTPTIMVMDDKSYEVYEFDNIGD 354
Query: 361 -ELAEGEIYSIVKVKGRMY----VKGRD 383
++ EG+ I K +G Y ++G+D
Sbjct: 355 VKIKEGDKVKIFKKEGVSYLVNKIEGKD 382
>pir||A69103 conserved hypothetical protein MTH1768 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622898|gb|AAB86234.1| (AE000932) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 352
Score = 186 bits (468), Expect = 3e-46
Identities = 120/379 (31%), Positives = 194/379 (50%), Gaps = 37/379 (9%)
Query: 3 FCYRCGISEEEGGPLINGLCQVCFRKENPILVLPQEVNTELCQNCGSYKKRGVWVDPKNY 62
FC RCG S+ E L GLC+ CF ++ IL +P + +C +C + G W+D
Sbjct: 2 FCVRCGSSDSE---LYEGLCRDCFLEDYSILRIPDRIEVRVCSHCRAKFISGQWLD---- 54
Query: 63 ELEALIFEVAENALLETLEDNLKVKEFEIVDWEELDEIREIPVGKAFVAYRVADYHIEYF 122
E L E + LED+ + W+E E EI + + +E
Sbjct: 55 --EGL---PDEEIVYRALEDS--------ISWDEPVENPEIELEIMQERGTIYRCLVE-- 99
Query: 123 PAIVIYEVRAKARIHELQIEPHDETSTVTVYIRQTVCPRCQKFLAGYYEAILQVRVEDRE 182
V EV K E ++E V I TVCP C K +GYYEA++Q+R + RE
Sbjct: 100 ---VDAEVLGKRLSQEYEVE---------VRITNTVCPTCSKQSSGYYEAVIQLRADGRE 147
Query: 183 FTKEEREEITRLVQEKVDEIMKRDRMGFIQDTIEKEEGIDFYMGSTSAARKLANAIREKY 242
+ E E R+VQ + ++ +RD++ ++ +E +EG+D+Y+GS +ARK+ +AIREK
Sbjct: 148 LAETEIETADRVVQRTLLKLSRRDKLAYLPQRVEVKEGVDYYIGSHKSARKVVDAIREKL 207
Query: 243 GGTISEAYELVGLDRQTSKEVYRTSVTIRLPKFRKGDIVEDRHGRVYEVEDVSGKGMRLK 302
GG E+ L+G D+ T K +YRT +++RL FR GD + H R+ V D+ KG+ ++
Sbjct: 208 GGITMESPRLMGQDKSTGKGLYRTWISLRLANFRVGDFL-SHHNRILAVIDLRKKGVSVR 266
Query: 303 NLETWESEHYDWKTIKREKVDLADYEEKKAMLVSKTPSEAQFMDMETYETFEVKKPS--D 360
+LET E ++ W + V + K + S++P Q + ET+E +++ S
Sbjct: 267 DLETREVKNILWGEYEDMDVVGRADDVKTTTVTSRSPGMIQILHPETFEPVDLEADSYTS 326
Query: 361 ELAEGEIYSIVKVKGRMYV 379
L GE ++++ R+Y+
Sbjct: 327 TLDIGEQVPVIEIDKRLYI 345
>pir||E72665 hypothetical protein APE0748 - Aeropyrum pernix (strain K1)
>gi|5104410|dbj|BAA79725.1| (AP000060) 371aa long
hypothetical protein [Aeropyrum pernix]
Length = 371
Score = 100 bits (247), Expect = 3e-20
Identities = 100/393 (25%), Positives = 176/393 (44%), Gaps = 57/393 (14%)
Query: 4 CYRCGISEEEGGPLINGLCQVCFRKENPILVLPQEVNTELCQNCGSYKKRGVWVDPKNYE 63
C CG + E G + LC C+ + + +P+ V C++CG+Y+ +G W N
Sbjct: 14 CPSCGRTLEGSG--VRRLCPDCYVERYGVARIPEAVKFVYCRDCGAYRYQGGW----NEG 67
Query: 64 LEALIFEVAENALLETLEDNLKVKEFEIVDWEELDE--IREIPVGKAFVAYRVADYHIEY 121
LE++ E+ L E L L V+ + E ++E + I + +AF V
Sbjct: 68 LESV-----EDTLREYLHMVLTVR---MKPTEAVEEAWVESIELVQAFAGPGV------- 112
Query: 122 FPAIVIYEVRAKARIHELQIEPHDETSTVTVYIRQTVCPRCQKFLAGY-YEAILQVRVED 180
+ A+V RA + E +TV Q +CPRC G +EA ++VR
Sbjct: 113 YTALVTVAGRAGG-------QSLVERKIITVEASQALCPRCTARSTGRGFEAEVKVRSTA 165
Query: 181 REFTKEEREEITRLVQEKVDEIMKRDRMGFIQDTIEKEEGIDFYMGSTSAARKLANAIRE 240
++ + I R+++ R GF+ E EG+D Y+ +AAR LA +R
Sbjct: 166 GSLGRDVKTGIARVLRRS------RSIAGFVVKVDENREGLDIYLTDQTAARMLAGKLRS 219
Query: 241 KYGGTISEAYELVGLDRQTS-KEVYRTSVTIRLPKFRKGDIVEDRHGRVYEVEDVSGKGM 299
++ + E+Y+LVG RQ S + R ++++R+P++R G+++ GR + SG+G+
Sbjct: 220 EFSAEVKESYKLVG--RQPSGRRKGRLTISVRIPEYRPGELI-SVEGRPHLYLGRSGRGL 276
Query: 300 RLKNLETWESEHYDWKT------IKREKVDLADYEEKKAMLVSKTPSEAQFMDMETYETF 353
+L+T D +KR + ++ ML+S + F+D++
Sbjct: 277 VTIDLDTGRERVVDTSRTGVLAGVKRYE---PGARLRRMMLLSSSGDSMVFLDVDKGMQE 333
Query: 354 EVKKPS-------DELAEGEIYSIVKVKGRMYV 379
V P + + G +Y + GR+YV
Sbjct: 334 VVDAPRGSVRPFVESMEPGRVYEVFIHGGRIYV 366
>gi|11499554 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483191|pir||C69496 conserved hypothetical protein
AF1972 - Archaeoglobus fulgidus
>gi|2648569|gb|AAB89283.1| (AE000967) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 349
Score = 98.7 bits (242), Expect = 1e-19
Identities = 64/226 (28%), Positives = 119/226 (52%), Gaps = 15/226 (6%)
Query: 154 IRQTVCPRCQKFLAGYYEAILQVRVEDREFTKEEREEITRLVQEKVDEIMKRDRMGFIQD 213
I + +C +C + GYYE+I+Q+R RE + EE E+ +V E + D+ FI
Sbjct: 127 INKVLCEKCSREAGGYYESIVQLRAAGRELSDEEIEKALEIVDEVISS-APEDQKAFISK 185
Query: 214 TIEKEEGIDFYMGSTSAARKLANAIREKYGGTISEAYELVGLDRQTSKEVYRTSVTIRLP 273
K EG++ + GS + +K++ I +K GG+I+E+ +L R ++VYR + +++LP
Sbjct: 186 LERKREGVNIFFGSRNIGKKVSRMIMKKLGGSITESKKL--HTRIDGRDVYRFTYSVKLP 243
Query: 274 KFRKGDIVEDRHGRVYEVED-VSGKGMRLKNLETWESEHYDWKTIKREKVDLADYEEKKA 332
++R+GDIVE + GR V + V+GKG+ + +T + E+V + + K
Sbjct: 244 EYREGDIVE-KEGRFAVVRNSVAGKGLDILTGKT--------VNLGNERVAVRREDLKSG 294
Query: 333 MLVSKTPSEAQFMDMETYETFEVKKPSDELAEGEIYSIVKVKGRMY 378
++V+ P+ + + E KPS E+ + ++ G+ +
Sbjct: 295 VVVNADPNAVEVV-CEDGRLVTTPKPSGAEIGAEV-KVFEINGKFF 338
>gb|AAG20548.1| (AE005125) Vng2474c [Halobacterium sp. NRC-1]
Length = 367
Score = 96.7 bits (237), Expect = 4e-19
Identities = 92/369 (24%), Positives = 144/369 (38%), Gaps = 47/369 (12%)
Query: 3 FCYRCGISEEEGGP-----LINGLCQVCFRKENPILVLPQEVNTELCQNCGSYKKRGVWV 57
FC CG + G LC C+ ++ P + +C CG+ + WV
Sbjct: 8 FCPECGDPVDSVGGDGATRREQSLCDSCYFAAFDLVDAPDTIEVMVCARCGAVHRGNRWV 67
Query: 58 DPKNYELEALIFEVAENALLETLEDNLKVKEFEIVDWEELDEIREIPVGKAFVAYR--VA 115
D + + A+ ET E E E VDWE E + + + V
Sbjct: 68 DIG-------ADDYVDVAVAETTEALGVHLEAEDVDWEVRPEKLDDNTVRMHATFTGVVR 120
Query: 116 DYHIEYFPAIVIYEVRAKARIHELQIEPHDETSTVTVYIRQTVCPRCQKFLAGYYEAILQ 175
D H E VTV + + C RC + Y + +Q
Sbjct: 121 DTH-------------------------RTEQVAVTVKVSRQTCQRCGRIAGESYASTVQ 155
Query: 176 VRVEDREFTKEEREEITRLVQEKV-DEIMKRDRMGFIQDTIEKEEGIDFYMGSTSAARKL 234
VR R+ T EE + L V D DR F+ + + E G D + +T KL
Sbjct: 156 VRAVGRDPTSEETDRAAELAHRIVADMEATGDREAFVTEIGDAESGTDIKLSTTKIGLKL 215
Query: 235 ANAIREKYGGTISEAYELVGLDRQTSKEVYRTSVTIRLPKFRKGDIVE---DRHGRVYEV 291
A + E++GG E +E + + EVYR + +RLP+F GD+V+ D G V V
Sbjct: 216 ARKLVEEFGGDF-EDHETLITEDDDGNEVYRVTYAVRLPEFVPGDVVDIAADDGGPVL-V 273
Query: 292 EDVSG--KGMRLKNLETWESEHYDWKTIKREKVDLADYEEKKAMLVSKTPSEAQFMDMET 349
+ G KG+R+ E +E+ D + K+ + ++ + + Q +D +T
Sbjct: 274 QSNHGNLKGVRVTTGEPYEASFEDGDSPDARKLGAVADATEATVVTVEDDAAIQILDPDT 333
Query: 350 YETFEVKKP 358
YE V +P
Sbjct: 334 YEAQTVARP 342
>gb|AAK42531.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 240
Score = 78.0 bits (189), Expect = 2e-13
Identities = 58/250 (23%), Positives = 105/250 (41%), Gaps = 35/250 (14%)
Query: 2 RFCYRCGISEEEGGPLINGLCQVCFRKENPILVLPQEVNTELCQNCGSYKKRGVWVDPKN 61
+FC CG ++ LI+ LC C+ K ++ P+ V + C+ CG+ RG W+
Sbjct: 7 KFCVLCG---KQNVDLIDSLCVDCYVKSKKLIETPKRVTGKYCKICGAQWIRGKWIRTSA 63
Query: 62 YELEALIFEVAENALLETLEDNLKVKEFEIVDWEELDEIREIPVGKAFVAYRVADYHIEY 121
L +++ ++ L + + V EF ++ I + P G +F
Sbjct: 64 TSLASVVEDIIARELGSKMRIDKNVDEFAF----DIKSIWKDPSGNSFAT---------- 109
Query: 122 FPAIVIYEVRAKARIHELQIEPHDETSTVTVYIRQTVCPRCQKFLAGYYEAILQVRVEDR 181
E R K R E + +++ + + +C C + YYEAI+Q+R + +
Sbjct: 110 ------IEFRGKVRGKSFSQE-----AVISLEMERELCDSCFRKKTRYYEAIVQLRSKGK 158
Query: 182 EFTKEEREEITRLVQEKVDEIMKRDRMGFIQDTIEKEEGIDFYMGSTSAARKLANAIREK 241
+++ + + I D IE EG+D+Y S S ARKL + I
Sbjct: 159 IGVDDKKRAF-------FESFFSTSIVDNISDVIEGREGVDYYFMSKSVARKLVSMISSI 211
Query: 242 YGGTISEAYE 251
++E+Y+
Sbjct: 212 VDVEVNESYQ 221
>emb|CAC12117.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 335
Score = 76.9 bits (186), Expect = 4e-13
Identities = 59/254 (23%), Positives = 118/254 (46%), Gaps = 20/254 (7%)
Query: 133 KARIHELQIEPHDETSTVTVYIRQTVCPRCQKFLAGYYEAILQVRVEDREFTKEEREEIT 192
K I ++P +T +V + CP C K Y+EA +Q+R ++ +EI
Sbjct: 95 KVNITRDHMDPKVQTVSVPYSVNYISCPTCNKLTGSYFEATIQLRTVSTKY-----DEIL 149
Query: 193 RLVQEKVDEIM----KRDRMGFIQDTIEKEEGIDFYMGSTSAARKLANAIREKYGGTISE 248
V + +++IM K D FI K EG+D Y+G +++ I + Y T+
Sbjct: 150 SEVLDSIEKIMEKRRKMDASSFISKIERKPEGVDIYLGKKGDGDLVSSFILDHYFATLIV 209
Query: 249 AYELVGLDRQTSKEVYRTSVTIRLPKFRKGDIVE-DRHGRVYEVEDVSGKGMRLKNLETW 307
+ L G+ + ++ +R + ++R+ +G IV D+ R Y + + + + + ++ET
Sbjct: 210 SKSLAGV--KEGRKFFRFTYSLRILDAPEGAIVSVDK--RKYILTAIRNRHIDVIDVETE 265
Query: 308 ESEHYDWKTI--KREKVDLADYEEKKAMLVSKTPSEAQFMDMETYETFEVKKPSDELAEG 365
E + K+ + + K +++S+T E+Q MD +T++ +K AEG
Sbjct: 266 ERGRINRNVFFSNDGKIVTKEPQVKNFIVISRTEDESQIMDSQTFKIITIK----GRAEG 321
Query: 366 EIYSIVKVKGRMYV 379
+ +G+ ++
Sbjct: 322 NEIRVFTYRGKYFI 335
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141334451
Number of Sequences: 2977
Number of extensions: 5982566
Number of successful extensions: 19990
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19969
Number of HSP's gapped (non-prelim): 10
length of query: 383
length of database: 189,106,746
effective HSP length: 57
effective length of query: 326
effective length of database: 154,992,987
effective search space: 50527713762
effective search space used: 50527713762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)