BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1719 (PAB1719) DE:Hypothetical protein
(373 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75073 hypothetical protein PAB1719 - Pyrococcus abyssi (st... 746 0.0
pir||H71091 hypothetical protein PH0997 - Pyrococcus horikoshii ... 589 e-167
pir||B75011 hypothetical protein PAB1283 - Pyrococcus abyssi (st... 95 1e-18
pir||G71140 hypothetical protein PH0338 - Pyrococcus horikoshii ... 92 1e-17
sp|O26820|Y724_METTH HYPOTHETICAL PROTEIN MTH724 >gi|7482247|pir... 73 7e-12
>pir||G75073 hypothetical protein PAB1719 - Pyrococcus abyssi (strain Orsay)
>gi|5458404|emb|CAB49892.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 373
Score = 746 bits (1904), Expect = 0.0
Identities = 373/373 (100%), Positives = 373/373 (100%)
Query: 1 MEKYGIILGKNPELSILEIKSFSRRFKLGVRVVEEVISGPNKSFIVVQSKNDIEKYFRWV 60
MEKYGIILGKNPELSILEIKSFSRRFKLGVRVVEEVISGPNKSFIVVQSKNDIEKYFRWV
Sbjct: 1 MEKYGIILGKNPELSILEIKSFSRRFKLGVRVVEEVISGPNKSFIVVQSKNDIEKYFRWV 60
Query: 61 GGSLKLVRIIGEGIESVKDMEYSRLFTVSVYGRKIDWKEWRRLGSYVKKVFKEKGPSKFF 120
GGSLKLVRIIGEGIESVKDMEYSRLFTVSVYGRKIDWKEWRRLGSYVKKVFKEKGPSKFF
Sbjct: 61 GGSLKLVRIIGEGIESVKDMEYSRLFTVSVYGRKIDWKEWRRLGSYVKKVFKEKGPSKFF 120
Query: 121 KPATTYAMPSELILKGFPEVKDVVFMFLNDRVLVGETVRLSDPFELKKLDVERPVVRPTI 180
KPATTYAMPSELILKGFPEVKDVVFMFLNDRVLVGETVRLSDPFELKKLDVERPVVRPTI
Sbjct: 121 KPATTYAMPSELILKGFPEVKDVVFMFLNDRVLVGETVRLSDPFELKKLDVERPVVRPTI 180
Query: 181 SIPPRLARIMVNLSEIRRGNVLDPFCGTGTIIMELTLQGLNAYGSDISQERILEAKQNVE 240
SIPPRLARIMVNLSEIRRGNVLDPFCGTGTIIMELTLQGLNAYGSDISQERILEAKQNVE
Sbjct: 181 SIPPRLARIMVNLSEIRRGNVLDPFCGTGTIIMELTLQGLNAYGSDISQERILEAKQNVE 240
Query: 241 WLRREFKVEKYPSLRVCDVRKLRKCFPRTRFNAIITEPYMGKALKSKLTFKEAETLGRKL 300
WLRREFKVEKYPSLRVCDVRKLRKCFPRTRFNAIITEPYMGKALKSKLTFKEAETLGRKL
Sbjct: 241 WLRREFKVEKYPSLRVCDVRKLRKCFPRTRFNAIITEPYMGKALKSKLTFKEAETLGRKL 300
Query: 301 DRLYYQAFESFSDVSKRNSKVVFVFPAFNLVDGSVYRRERQWLEDLGFKVITRILEGEKE 360
DRLYYQAFESFSDVSKRNSKVVFVFPAFNLVDGSVYRRERQWLEDLGFKVITRILEGEKE
Sbjct: 301 DRLYYQAFESFSDVSKRNSKVVFVFPAFNLVDGSVYRRERQWLEDLGFKVITRILEGEKE 360
Query: 361 QRILREIYVLSKY 373
QRILREIYVLSKY
Sbjct: 361 QRILREIYVLSKY 373
>pir||H71091 hypothetical protein PH0997 - Pyrococcus horikoshii
>gi|3257411|dbj|BAA30094.1| (AP000004) 374aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 374
Score = 589 bits (1503), Expect = e-167
Identities = 273/370 (73%), Positives = 334/370 (89%)
Query: 1 MEKYGIILGKNPELSILEIKSFSRRFKLGVRVVEEVISGPNKSFIVVQSKNDIEKYFRWV 60
MEKY +ILGKNPELS++E+K+FSRRF+LGVR++EE I G NKSF ++Q+K DIEKYFRW+
Sbjct: 1 MEKYAVILGKNPELSLVELKAFSRRFRLGVRILEERIYGSNKSFAIIQAKEDIEKYFRWI 60
Query: 61 GGSLKLVRIIGEGIESVKDMEYSRLFTVSVYGRKIDWKEWRRLGSYVKKVFKEKGPSKFF 120
GGSLKLVR+IGEG++S++D+EYS+LFTVSVYGR++DWKEWRR GS +K+VFKEK +KFF
Sbjct: 61 GGSLKLVRLIGEGVDSIRDLEYSKLFTVSVYGRRVDWKEWRRFGSMIKEVFKEKDSAKFF 120
Query: 121 KPATTYAMPSELILKGFPEVKDVVFMFLNDRVLVGETVRLSDPFELKKLDVERPVVRPTI 180
KPA TYAMPSELILKGFP+VKDVV +F++D+VLVGETVR++DPFELKKLDVERPVVRPTI
Sbjct: 121 KPANTYAMPSELILKGFPKVKDVVLLFVDDKVLVGETVRVTDPFELKKLDVERPVVRPTI 180
Query: 181 SIPPRLARIMVNLSEIRRGNVLDPFCGTGTIIMELTLQGLNAYGSDISQERILEAKQNVE 240
SIPPRLAR+MVNLSEIRRGNVLDPFCGTGTI+MELTLQGLNAYG+DI + R+ +AK+N++
Sbjct: 181 SIPPRLARVMVNLSEIRRGNVLDPFCGTGTIVMELTLQGLNAYGTDIEEGRVRDAKKNID 240
Query: 241 WLRREFKVEKYPSLRVCDVRKLRKCFPRTRFNAIITEPYMGKALKSKLTFKEAETLGRKL 300
WLR+EF++ KYP L+VCDVR+LRKCFPRTRF+AIITEPYMGK LK K + EA + + L
Sbjct: 241 WLRKEFRIRKYPVLKVCDVRRLRKCFPRTRFDAIITEPYMGKPLKYKPSRGEAIKIAKGL 300
Query: 301 DRLYYQAFESFSDVSKRNSKVVFVFPAFNLVDGSVYRRERQWLEDLGFKVITRILEGEKE 360
DRLYYQAFESF+DV KR S +VFVFPAF+L +G VYRR R WLE+LGFKV+ R+ EGE+E
Sbjct: 301 DRLYYQAFESFADVLKRGSIIVFVFPAFSLSNGEVYRRNRPWLEELGFKVLYRVSEGEEE 360
Query: 361 QRILREIYVL 370
RI+R+I+V+
Sbjct: 361 HRIVRDIHVI 370
>pir||B75011 hypothetical protein PAB1283 - Pyrococcus abyssi (strain Orsay)
>gi|5459042|emb|CAB50528.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 332
Score = 94.8 bits (232), Expect = 1e-18
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 32/217 (14%)
Query: 143 VVFMFLNDRVLVGETVR--LSDPFELKKLDVERPVVRPTISIPPRLARIMVNLSEIRRGN 200
++ ++ ++ +G +R F+ +K D RP RP I++PPR+AR MVNL+ R
Sbjct: 129 IIKVYCGRKLWIGIRIREFRGKEFDERKAD-RRPFSRP-IALPPRIARAMVNLTRATR-E 185
Query: 201 VLDPFCGTGTIIMELTLQGLNAYGSDISQERILEAKQNVEWLRREFKVEKYPSLRVCDVR 260
+LDPF GTG +++E L GL YG DI ++ + AK N+E+ + V+ Y ++V D
Sbjct: 186 ILDPFMGTGGMLIEAGLMGLKVYGIDIREDMVEGAKINLEY----YGVKDY-VVKVGDAT 240
Query: 261 KLRKCFPRTRFNAIITEPYMGKALKSKLTFKEAETLGRKLDRLYYQAFESFSDVSKRNSK 320
K+++ FP F AI T+P G + TL D LY +A ES V + +
Sbjct: 241 KIKEAFPGKTFEAIATDPPYG----------TSTTLPMDRDELYKRALESMYSVLE--GR 288
Query: 321 VVFVFPA-FNLVDGSVYRRERQWLEDLGFKVITRILE 356
+ FP+ F+ +D + E +GFKVI R +
Sbjct: 289 LAIAFPSDFDALDVA---------ETIGFKVIGRFYQ 316
>pir||G71140 hypothetical protein PH0338 - Pyrococcus horikoshii
>gi|3256729|dbj|BAA29412.1| (AP000002) 329aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 329
Score = 92.1 bits (225), Expect = 1e-17
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 33/231 (14%)
Query: 143 VVFMFLNDRVLVGETVR--LSDPFELKKLDVERPVVRPTISIPPRLARIMVNLSEIRRGN 200
VV ++ +++ +G +R FE +K D RP RP I++PPR+AR MVNL++ R
Sbjct: 127 VVRVYCGNKIWLGIRIREFKGKEFEDRKAD-RRPFSRP-IALPPRIARAMVNLTKATR-E 183
Query: 201 VLDPFCGTGTIIMELTLQGLNAYGSDISQERILEAKQNVEWLRREFKVEKYPSLRVCDVR 260
VLDPF GTG +++E L GL YG DI ++ + AK N+E+ + + Y ++V D
Sbjct: 184 VLDPFMGTGGMLIEAGLIGLKVYGLDIREDMVEGAKINLEY----YGIRDY-VVKVGDAT 238
Query: 261 KLRKCFPRTRFNAIITEPYMGKALKSKLTFKEAETLGRKLDRLYYQAFESFSDVSKRNSK 320
K+ + FP F A+ T+P G + TL + LY ++ ES V + +
Sbjct: 239 KIEEVFPGKTFEAVATDPPYG----------NSTTLPMDRNELYKRSLESIHSVLE--GR 286
Query: 321 VVFVFPA-FNLVDGSVYRRERQWLEDLGFKVITRILEGEKEQRILREIYVL 370
+ FPA F+ R E +GFKV+ R + + R YV+
Sbjct: 287 LAIAFPADFD---------ARDVAESIGFKVLGRFYQ-RVHSSLSRYFYVM 327
>sp|O26820|Y724_METTH HYPOTHETICAL PROTEIN MTH724 >gi|7482247|pir||G69196 conserved
hypothetical protein MTH724 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621813|gb|AAB85229.1| (AE000852) methyltransferase
related protein [Methanobacterium thermoautotrophicum]
Length = 336
Score = 72.6 bits (175), Expect = 7e-12
Identities = 88/362 (24%), Positives = 157/362 (43%), Gaps = 67/362 (18%)
Query: 1 MEKYGIILGKNPELSILEIKSFSRRFKLGVRVVE-----EVISGPNKSFIVVQSKNDIEK 55
ME ++ ++PEL E++S + V+E EVI P ++ +++ +
Sbjct: 1 MEMMVLLSQEHPELPSAELRSVLMSEGIDFSVIESGSGYEVIDAPRSTWKILKKR----- 55
Query: 56 YFRWVGGSLKLVRIIGEGIESVKDMEYSRLFTVSVYGRKIDWKEW---------RRLGSY 106
+ + ++ +IG Y+ + +IDW ++ R+L
Sbjct: 56 ----LAYAHEISEVIG----------YAAADDLDDAAEEIDWSKYVRESFAVRIRKLCGD 101
Query: 107 VKKVFKEKGPSKFFKPATTYAMPSELILKGFPEVKDVVFMFLNDRVLVGETVRLSDPFEL 166
V E+ K T + E K + ++ V+ +NDR ++ T RL+
Sbjct: 102 VDSRTLERTIGAIIKEDTGLKVDLE---KPWTLIRPVL---INDRFIL--TRRLA-VISK 152
Query: 167 KKLDVERPVVRPTI---SIPPRLARIMVNLSEIRRGN-VLDPFCGTGTIIMELTLQGLNA 222
+ + RP RP S+ P+LAR MVNLS ++ G+ +LDPFCGTG I++E L G+
Sbjct: 153 EHFNQARPHKRPFFYPGSMSPKLARCMVNLSGVKAGDRILDPFCGTGGILIEAGLMGVRV 212
Query: 223 YGSDISQERILEAKQNVEWLRREFKVEKYPSLRVCDVRKLRKCFPRTRFNAIITEPYMGK 282
G+DI + ++N++ + + + +R D R LR + +AI+T+P G
Sbjct: 213 VGADIDWRMVEGTRENLQ----HYGITDFEVIR-SDARDLRL---DEKVDAIVTDPPYGI 264
Query: 283 ALKSKLTFKEAETLGRKLDRLYYQAFESFSDVSKRNSKVVFVFPAF----NLVDGSVYRR 338
+ A T G K ++LY + +S + P + +L+D R
Sbjct: 265 S---------ASTAGEKSEKLYREFLDSAHSNLAEGGMICMAAPHYLDLESLIDERFSIR 315
Query: 339 ER 340
ER
Sbjct: 316 ER 317
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.141 0.408
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135493055
Number of Sequences: 2977
Number of extensions: 5584595
Number of successful extensions: 12495
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12488
Number of HSP's gapped (non-prelim): 5
length of query: 373
length of database: 189,106,746
effective HSP length: 55
effective length of query: 318
effective length of database: 156,189,961
effective search space: 49668407598
effective search space used: 49668407598
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)