BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1721 (PAB1721) DE:Hypothetical protein
(308 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75073 hypothetical protein PAB1721 - Pyrococcus abyssi (st... 619 e-176
pir||E71092 hypothetical protein PH1002 - Pyrococcus horikoshii ... 533 e-150
pir||C64503 conserved hypothetical protein MJ1629 - Methanococcu... 296 3e-79
gi|11498115 conserved hypothetical protein [Archaeoglobus fulgid... 225 6e-58
gb|AAK43344.1| Conserved hypothetical protein [Sulfolobus solfat... 199 2e-50
pir||E72746 hypothetical protein APE0500 - Aeropyrum pernix (str... 169 3e-41
>pir||C75073 hypothetical protein PAB1721 - Pyrococcus abyssi (strain Orsay)
>gi|5458400|emb|CAB49888.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 308
Score = 619 bits (1579), Expect = e-176
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MKIIPLASESLGVRSLALFLRIGKVGILIDPGVALGPKRYSLPPAQAEMKALAVAREKIQ 60
MKIIPLASESLGVRSLALFLRIGKVGILIDPGVALGPKRYSLPPAQAEMKALAVAREKIQ
Sbjct: 1 MKIIPLASESLGVRSLALFLRIGKVGILIDPGVALGPKRYSLPPAQAEMKALAVAREKIQ 60
Query: 61 EYAKKAQIVTISHYHYDHHTPFFEGLYESSSIEKAKEIYTGKILLIKHPQENINHSQRKR 120
EYAKKAQIVTISHYHYDHHTPFFEGLYESSSIEKAKEIYTGKILLIKHPQENINHSQRKR
Sbjct: 61 EYAKKAQIVTISHYHYDHHTPFFEGLYESSSIEKAKEIYTGKILLIKHPQENINHSQRKR 120
Query: 121 AQEFLKNAREIAREISSADSKTFDFGEFIIEFSPPVPHGREGSKLGYVVMTLVDDGKTRI 180
AQEFLKNAREIAREISSADSKTFDFGEFIIEFSPPVPHGREGSKLGYVVMTLVDDGKTRI
Sbjct: 121 AQEFLKNAREIAREISSADSKTFDFGEFIIEFSPPVPHGREGSKLGYVVMTLVDDGKTRI 180
Query: 181 VHASDSQLINDRAIDWIIEKNPDILIAGGPPTYLSYRVGNVREVGIKNINRIIAETNAKL 240
VHASDSQLINDRAIDWIIEKNPDILIAGGPPTYLSYRVGNVREVGIKNINRIIAETNAKL
Sbjct: 181 VHASDSQLINDRAIDWIIEKNPDILIAGGPPTYLSYRVGNVREVGIKNINRIIAETNAKL 240
Query: 241 VIDHHVVRDKNYENFFQELDKTPQTFAEFLGVKSAPLEAYRKELHKLEKGEDVELPKGIQ 300
VIDHHVVRDKNYENFFQELDKTPQTFAEFLGVKSAPLEAYRKELHKLEKGEDVELPKGIQ
Sbjct: 241 VIDHHVVRDKNYENFFQELDKTPQTFAEFLGVKSAPLEAYRKELHKLEKGEDVELPKGIQ 300
Query: 301 KFLKGLPP 308
KFLKGLPP
Sbjct: 301 KFLKGLPP 308
>pir||E71092 hypothetical protein PH1002 - Pyrococcus horikoshii
>gi|3257416|dbj|BAA30099.1| (AP000004) 352aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 352
Score = 533 bits (1357), Expect = e-150
Identities = 250/306 (81%), Positives = 289/306 (93%)
Query: 1 MKIIPLASESLGVRSLALFLRIGKVGILIDPGVALGPKRYSLPPAQAEMKALAVAREKIQ 60
MK+IPLASESLGVRSLALFL+IGKVGILIDPGVALGPKRY+LPPAQAEMKAL++AREKIQ
Sbjct: 46 MKVIPLASESLGVRSLALFLKIGKVGILIDPGVALGPKRYALPPAQAEMKALSLAREKIQ 105
Query: 61 EYAKKAQIVTISHYHYDHHTPFFEGLYESSSIEKAKEIYTGKILLIKHPQENINHSQRKR 120
EYAKKAQIVTISHYHYDHHTPFFEG+YESSS+EKA+EIY GK+LLIKHP ENIN+SQ+KR
Sbjct: 106 EYAKKAQIVTISHYHYDHHTPFFEGIYESSSVEKAREIYAGKLLLIKHPTENINNSQKKR 165
Query: 121 AQEFLKNAREIAREISSADSKTFDFGEFIIEFSPPVPHGREGSKLGYVVMTLVDDGKTRI 180
A EFLKNA+EIA++I ADS++FDFG F IEFSPPVPHGREGSKLGYV+M LVDDGK +
Sbjct: 166 AHEFLKNAKEIAKDIKFADSQSFDFGSFTIEFSPPVPHGREGSKLGYVLMVLVDDGKKSV 225
Query: 181 VHASDSQLINDRAIDWIIEKNPDILIAGGPPTYLSYRVGNVREVGIKNINRIIAETNAKL 240
+HASD+QLIND+A++WIIEKNPDILIAGGPPTYL++RVGNV+E+G+KNINRII+ETNAK+
Sbjct: 226 LHASDTQLINDKAVEWIIEKNPDILIAGGPPTYLAHRVGNVKEIGMKNINRIISETNAKI 285
Query: 241 VIDHHVVRDKNYENFFQELDKTPQTFAEFLGVKSAPLEAYRKELHKLEKGEDVELPKGIQ 300
V+DHH++RDK YE FF ELD+ P TFAEFLG +SAPLEAYR+ELHKLEKGE+VE+P GI+
Sbjct: 286 VLDHHIIRDKGYERFFSELDERPLTFAEFLGKESAPLEAYRRELHKLEKGEEVEVPGGIK 345
Query: 301 KFLKGL 306
KFLKGL
Sbjct: 346 KFLKGL 351
>pir||C64503 conserved hypothetical protein MJ1629 - Methanococcus jannaschii
>gi|1500528|gb|AAB99650.1| (U67603) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 292
Score = 296 bits (749), Expect = 3e-79
Identities = 154/295 (52%), Positives = 213/295 (72%), Gaps = 10/295 (3%)
Query: 1 MKIIPLASESLGVRSLALFLRIGKVGILIDPGVALGPKRYSLPPAQAEMKALAVAREKIQ 60
MK+IPLASESLGVRSLA +++ VGILIDPGVAL P RY L P E + L R KI
Sbjct: 1 MKVIPLASESLGVRSLATYVKTKDVGILIDPGVALAPDRYGLKPNDIEFEKLREMRNKIN 60
Query: 61 EYAKKAQIVTISHYHYDHHTPFFEGLYESSSIEKAKEIYTGKILLIKHPQENINHSQRKR 120
+YAKK+ ++TISHYHYDH+TPFF+ +Y S + AKE+Y KILLIKHP E IN SQ R
Sbjct: 61 DYAKKSNVITISHYHYDHYTPFFDDIYLESK-DYAKELYKDKILLIKHPTEFINKSQMNR 119
Query: 121 AQEFLKNAREIAREISSADSKTFDFGEFIIEFSPPVPHGREGSKLGYVVMTLVDDGKTRI 180
A++FL++ ++IA++I AD+KTF FG+ I+FSPP PHGR+ KLGYV++T V +GK +
Sbjct: 120 AKKFLESVKDIAKKIEFADNKTFKFGKTEIKFSPPFPHGRD-DKLGYVLITTVKEGKFKF 178
Query: 181 VHASDSQ-LINDRAIDWIIEKNPDILIAGGPPTYLSYRVGNVR-EVGIKNINRIIAETNA 238
+H SD+Q +I D D+II++ P++++ GGPPTYL +R G E +N+ I+ T A
Sbjct: 179 MHTSDTQGIIFDDIRDYIIKEKPNLILMGGPPTYLMHRYGKKNLEKTNENLKYIVENTGA 238
Query: 239 KLVIDHHVVRDKNYENFFQELDKTPQTFAEFLGVKSAPLEAYRKELHKLEKGEDV 293
+L+IDHH++RDK F ++++ +T AEFLG K+ LEAYRKE +++G+D+
Sbjct: 239 ELIIDHHLLRDK---KFREKINVDFKTVAEFLGEKNLLLEAYRKE---IKQGKDI 287
>gi|11498115 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429910|pir||H69312 conserved hypothetical protein
AF0504 - Archaeoglobus fulgidus
>gi|2650122|gb|AAB90734.1| (AE001069) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 301
Score = 225 bits (567), Expect = 6e-58
Identities = 123/299 (41%), Positives = 184/299 (61%), Gaps = 23/299 (7%)
Query: 1 MKIIPLASESLGVRSLALFLRIGKVGILIDPGVALGPKRYSLPPAQAEMKALAVAREKIQ 60
M+++P+A +S+GVRS+A F++ V ILIDPGV+L PKRY LPP + E++ + E+I+
Sbjct: 15 MEVVPIAYDSMGVRSMATFVKTADVSILIDPGVSLAPKRYRLPPHRIEIERMNQKWEEIK 74
Query: 61 EYAKKAQIVTISHYHYDHHTPFFEGLYESSSIEKAKEIYTGKILLIKHPQENINHSQRKR 120
E KKA++ I+HYHYDHH P EI++GK LL+KHP E IN SQ+ R
Sbjct: 75 EMMKKAEVAIITHYHYDHHDP------------NEVEIFSGKKLLLKHPTEKINRSQKGR 122
Query: 121 AQEFLKNAREIAREISSADSKTFDFGEFIIEFSPPVPHGREGSKLGYVVMTLVDDGKTRI 180
A FL+ + + EI D K+++FG ++E S PV HG + S+LG+VV V+DGK+
Sbjct: 123 AAYFLEQLKSVDVEIDYCDGKSYEFGNTVVELSKPVFHGAD-SRLGFVVEVYVEDGKSSF 181
Query: 181 VHASDSQ-LINDRAIDWIIEKNPDILIAGGPPTY-LSYRVGNVR-EVGIKNINRIIAETN 237
+ +SD + N+ + +++EK+ +++ GP TY L YR E ++N+ R+IAE
Sbjct: 182 LFSSDVEGPNNEEQLAFMLEKSAEVVFIDGPMTYMLGYRFSQKSFESSVENLKRLIAEDV 241
Query: 238 AKLVIDHHVVRDKNYENFFQELDKT-------PQTFAEFLGVKSAPLEAYRKELHKLEK 289
LV+DHH+ RD + QE+ K ++ AEF GVK LEA R EL+K++K
Sbjct: 242 KTLVLDHHLTRDLRWREKMQEVFKAGEEAGVKVESAAEFAGVKEELLEARRAELYKMDK 300
>gb|AAK43344.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 308
Score = 199 bits (502), Expect = 2e-50
Identities = 117/314 (37%), Positives = 175/314 (55%), Gaps = 22/314 (7%)
Query: 1 MKIIPLASESLGVRSLALFLRIGKVGILIDPGVALGPKRYSLPPAQAEMKALAVAREKIQ 60
MKI P+A ESLGVRS A + + +L+DP V+L P+RY+LPP Q E+ L + +
Sbjct: 1 MKITPIAFESLGVRSQATLIETKDLRVLVDPAVSLAPRRYNLPPHQREVDRLTQLAKVLV 60
Query: 61 EYAKKAQIVTISHYHYDHHTPFFEGLYESSSIEKAKEIYTGKILLIKHPQENINHSQR-K 119
+ AK ++ +SHYHYDHH P + +IY KI+ +K PQ IN+SQ+ +
Sbjct: 61 DVAKDVDVIVVSHYHYDHHDPGY---------VIPTDIYKNKIVFLKDPQNMINNSQKYR 111
Query: 120 RAQEFLKNAREIAREISSADSKTFDFGEFIIEFSPPVPHGREGSKLGYVVMTLVDDGKTR 179
RA FL++ ++ R+I AD KTF+F I FSP VPHG + +LGYV+ + D +
Sbjct: 112 RAPRFLRSIKDKPRKIEIADGKTFEFNTTTISFSPAVPHGAD-ERLGYVIQVAISDKDST 170
Query: 180 IVHASDSQ-LINDRAIDWIIEKNPDILIAGGPPTYLSYRVGNVREV--GIKNINRIIAET 236
++ SD + D + + EK P ++I GP +YL R E+ I+N+ II
Sbjct: 171 VIFTSDIEGAPKDVHLKFTKEKMPTVIIIDGPLSYLLGRALKEEELENSIRNMEEIIKNG 230
Query: 237 NAKLVIDHHVVRDKNY-------ENFFQELDKTPQTFAEFLGVKSAPLEAYRKELHKLEK 289
++IDHHV+RD NY + ++L T AE+L ++ LEA RKEL+K E
Sbjct: 231 LETVIIDHHVLRDINYAQVLKPVHDIAKDLGVRVTTAAEYLNLEPLILEARRKELYK-ED 289
Query: 290 GEDVELPKGIQKFL 303
++P+G+ L
Sbjct: 290 NRPAKIPRGLANLL 303
>pir||E72746 hypothetical protein APE0500 - Aeropyrum pernix (strain K1)
>gi|5104149|dbj|BAA79465.1| (AP000059) 295aa long
hypothetical protein [Aeropyrum pernix]
Length = 295
Score = 169 bits (425), Expect = 3e-41
Identities = 111/306 (36%), Positives = 168/306 (54%), Gaps = 28/306 (9%)
Query: 1 MKIIPLASESLGVRSLALFLRIGKVGILIDPGVALGPKRYSLPPAQAEMKALAVAREKIQ 60
+++ +A++SLGVRS+A F+ I +D G ++ P+R+SLPP E++ L A ++ +
Sbjct: 2 LRVEIVAADSLGVRSIATFVEACGYSIGVDLGASIAPRRFSLPPHPRELRRLEQALDRAR 61
Query: 61 EYAKKAQIVTISHYHYDHHTPFFEGLYESSSIEKAKEIYTGKILLIKHPQENINHSQRKR 120
+++ I I+HYHYDH+ + E+Y G++LL K +IN SQR R
Sbjct: 62 RRLEESNIAIITHYHYDHY------------LRDEPELYAGRLLLAKDINRSINRSQRFR 109
Query: 121 AQEFLKNAREIAR-EISSADSKTFDF-GEFIIEFSPPVPHGREGSKLGYVVMTLVDDGKT 178
FL + + R + ADS+ F G IEFS PV HG EG+KLG V+M +
Sbjct: 110 GYRFLVKSGLVERGRVEYADSRVFRLEGGLTIEFSKPVWHGEEGTKLGKVLMVRITCEGV 169
Query: 179 RIVHASDSQ-LINDRAIDWII---EKNPDILIAGGPPTYL-SYRVG-NVREVGIKNINRI 232
IV ASD Q N+ A++ ++ + P +LI GPP YL YRVG + E+GI+N+ +
Sbjct: 170 SIVFASDVQGPGNNEALEELLKWSKPRPLVLIISGPPLYLGGYRVGMSSVELGIRNLEVL 229
Query: 233 IAETNAK-LVIDHHVVRDKNYENFFQELDKTPQ-------TFAEFLGVKSAPLEAYRKEL 284
K LV+DHH+VRD + + L T AE++G++ PLE R+EL
Sbjct: 230 AERLRPKRLVVDHHLVRDPRFPEVLERLRGRAAGAGVEVLTAAEYMGLRPEPLETMRREL 289
Query: 285 HKLEKG 290
K E+G
Sbjct: 290 WKGEEG 295
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114575540
Number of Sequences: 2977
Number of extensions: 4785201
Number of successful extensions: 13364
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13339
Number of HSP's gapped (non-prelim): 6
length of query: 308
length of database: 189,106,746
effective HSP length: 57
effective length of query: 251
effective length of database: 154,992,987
effective search space: 38903239737
effective search space used: 38903239737
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)