BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1723 (PAB1723) DE:Hypothetical protein
(252 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75073 hypothetical protein PAB1723 - Pyrococcus abyssi (st... 513 e-145
pir||G71092 hypothetical protein PH1004 - Pyrococcus horikoshii ... 467 e-131
gi|11499535 A. fulgidus predicted coding region AF1953 [Archaeog... 144 9e-34
pir||A75174 hypothetical protein PAB1999 - Pyrococcus abyssi (st... 102 4e-21
pir||H71040 probable phosphoesterase (EC 3.1.-.-) PH1616 - Pyroc... 101 1e-20
pir||G72200 conserved hypothetical protein - Thermotoga maritima... 92 5e-18
>pir||A75073 hypothetical protein PAB1723 - Pyrococcus abyssi (strain Orsay)
>gi|5458398|emb|CAB49886.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 252
Score = 513 bits (1308), Expect = e-145
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MAYVAVLANIAGNLPALTAALGRIEELKEEGYEIEKYYILGNIVGLFPYPKEVIEALKNL 60
MAYVAVLANIAGNLPALTAALGRIEELKEEGYEIEKYYILGNIVGLFPYPKEVIEALKNL
Sbjct: 1 MAYVAVLANIAGNLPALTAALGRIEELKEEGYEIEKYYILGNIVGLFPYPKEVIEALKNL 60
Query: 61 AKSNRVKIIRGKYDQLIAMSDPHAKGPDYIDKLDLPSHLKASLKYTWEKLGHEGREYLRD 120
AKSNRVKIIRGKYDQLIAMSDPHAKGPDYIDKLDLPSHLKASLKYTWEKLGHEGREYLRD
Sbjct: 61 AKSNRVKIIRGKYDQLIAMSDPHAKGPDYIDKLDLPSHLKASLKYTWEKLGHEGREYLRD 120
Query: 121 LPVYLVDKIGKNEIFGVYGSPINPFDGEVLPDQPTSYYEAIMRPVKEYEMLIVASPRYPV 180
LPVYLVDKIGKNEIFGVYGSPINPFDGEVLPDQPTSYYEAIMRPVKEYEMLIVASPRYPV
Sbjct: 121 LPVYLVDKIGKNEIFGVYGSPINPFDGEVLPDQPTSYYEAIMRPVKEYEMLIVASPRYPV 180
Query: 181 EAMTMYGRVVCPGSVGFPPAREHKATFALIDAETLKAKFIEVDYDKRIIEERIRSEGLPE 240
EAMTMYGRVVCPGSVGFPPAREHKATFALIDAETLKAKFIEVDYDKRIIEERIRSEGLPE
Sbjct: 181 EAMTMYGRVVCPGSVGFPPAREHKATFALIDAETLKAKFIEVDYDKRIIEERIRSEGLPE 240
Query: 241 EIIRILYHGGKA 252
EIIRILYHGGKA
Sbjct: 241 EIIRILYHGGKA 252
>pir||G71092 hypothetical protein PH1004 - Pyrococcus horikoshii
>gi|3257418|dbj|BAA30101.1| (AP000004) 252aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 252
Score = 467 bits (1188), Expect = e-131
Identities = 218/252 (86%), Positives = 241/252 (95%)
Query: 1 MAYVAVLANIAGNLPALTAALGRIEELKEEGYEIEKYYILGNIVGLFPYPKEVIEALKNL 60
M YVAVLANIAGN PALTAAL +IEELKEEGYEIEKYYILGNIVGLFPYP+EVIEA+KNL
Sbjct: 1 MVYVAVLANIAGNFPALTAALEKIEELKEEGYEIEKYYILGNIVGLFPYPREVIEAIKNL 60
Query: 61 AKSNRVKIIRGKYDQLIAMSDPHAKGPDYIDKLDLPSHLKASLKYTWEKLGHEGREYLRD 120
AK++ VK+IRGKYDQLIAMSDPHA P YIDKL++P HLKA+LKYTWEKLGHEGREYLRD
Sbjct: 61 AKTSNVKVIRGKYDQLIAMSDPHAGDPKYIDKLEIPDHLKATLKYTWEKLGHEGREYLRD 120
Query: 121 LPVYLVDKIGKNEIFGVYGSPINPFDGEVLPDQPTSYYEAIMRPVKEYEMLIVASPRYPV 180
LP+YLVDKIGKNEIFGVYGSP+NPFDGE+LPDQPTSYYEAIMRPVKEYEML+VASPRYP+
Sbjct: 121 LPIYLVDKIGKNEIFGVYGSPVNPFDGEILPDQPTSYYEAIMRPVKEYEMLLVASPRYPL 180
Query: 181 EAMTMYGRVVCPGSVGFPPAREHKATFALIDAETLKAKFIEVDYDKRIIEERIRSEGLPE 240
+AMTMYGRVVCPGS+GFPPAREHKATFAL+DAETLK KFIEV+YDK+IIE+RI+ E LPE
Sbjct: 181 DAMTMYGRVVCPGSIGFPPAREHKATFALVDAETLKVKFIEVEYDKKIIEDRIKLEKLPE 240
Query: 241 EIIRILYHGGKA 252
E+I+ILYHGGKA
Sbjct: 241 EVIKILYHGGKA 252
>gi|11499535 A. fulgidus predicted coding region AF1953 [Archaeoglobus fulgidus]
>gi|7435079|pir||H69493 hypothetical protein AF1953 -
Archaeoglobus fulgidus >gi|2648593|gb|AAB89306.1|
(AE000968) A. fulgidus predicted coding region AF1953
[Archaeoglobus fulgidus]
Length = 247
Score = 144 bits (360), Expect = 9e-34
Identities = 92/261 (35%), Positives = 144/261 (54%), Gaps = 30/261 (11%)
Query: 1 MAYVAVLANIAGNLPALTAALGRIEELKEEGYEIEKYYILGNIVGLFPYPKEVIEALKNL 60
M +A+L+N+ NLPAL L +E++KEEG +++K YIL + GL PYP+E + L
Sbjct: 1 MDMIAILSNLHSNLPALAEVLSIVEKMKEEGTDVKKIYIL-SAFGLMPYPEETYKLLSG- 58
Query: 61 AKSNRVKIIRGKYDQLIA----MSD---PHAKGPDYIDKLDLPSHLKASLKYTWEKLGHE 113
+ + ++ GKYD+L+A +SD A G + ++ +D+ W++LGHE
Sbjct: 59 GQGKIISVVSGKYDRLLAKWNELSDEEKEEAVGKELVEVMDI----------YWDELGHE 108
Query: 114 GREYLRDLPV-YLVDKIGKNEIFGVYGSPINPFDGEVLPDQPTSYYEAIMRPVKEYEMLI 172
GR+++R++ ++ +K NE + YG NP D +QP SYYEA +K+YE++
Sbjct: 109 GRKWVRNMTERFIAEKFDWNEFYFTYGLLENP-DEMPAENQPPSYYEAKYADLKKYEVIA 167
Query: 173 VASPRYPVEAMTMYGRVVCPGSVGFPPAREHKATFALIDAETLKAKFIEVDYDKRIIEER 232
VA R P T G++VCPG G + TFAL+D +TL F +Y + +E+R
Sbjct: 168 VAG-REPYAVNTKIGKIVCPGIAGL----GREPTFALVDTKTLHVSFETFEYKIKEVEDR 222
Query: 233 IRSEGLP----EEIIRILYHG 249
I +P E + ILY G
Sbjct: 223 IMELEIPQATKEYLKDILYRG 243
>pir||A75174 hypothetical protein PAB1999 - Pyrococcus abyssi (strain Orsay)
>gi|5457982|emb|CAB49472.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 233
Score = 102 bits (252), Expect = 4e-21
Identities = 73/246 (29%), Positives = 119/246 (47%), Gaps = 19/246 (7%)
Query: 4 VAVLANIAGNLPALTAALGRIEELKEEGYEIEKYYILGNIVGLFPYPKEVIEALKNLAKS 63
+A++++I N AL A I++ IEK +G++VG P EV+E +K +
Sbjct: 6 IALISDIHSNYEALRAVWKEIKD-------IEKVACMGDLVGYGASPNEVVEFIKREMEK 58
Query: 64 NRVKIIRGKYDQLIAMSDPHAKGPDYIDKLDLPSHLKASLKYTWEKLGHEGREYLRDLPV 123
+V +RG +D +A P + + ++++ L E E+LR LPV
Sbjct: 59 GKVLCVRGNHDNAVAFGADWGFNP----------YARYAIRWQQRVLTVENLEFLRRLPV 108
Query: 124 YLVDKIGKNEIFGVYGSPINPFDGEVLPDQPTSYYEAIMRPVKEYEMLIVASPRYPVEAM 183
K+G ++GSP P D + P P S +E +R ++E + LIV P+
Sbjct: 109 RQFFKLGNRSYHVIHGSPRAPLDEYLFPWLPDSEFEDCLRYIRE-DDLIVGHTHVPMLKE 167
Query: 184 TMYGRVVCPGSVGFPPAREHKATFALIDAETLKAKFIEVDYDKRIIEERIRSEGLPEEII 243
RV+ PGSVG P + +A++A++ E K +F V+YD E+I GLPE +
Sbjct: 168 IKGRRVINPGSVGQPRDGDWRASYAIL-YENGKIEFFRVEYDVEKAAEKILKAGLPEFLA 226
Query: 244 RILYHG 249
L+ G
Sbjct: 227 LRLFEG 232
>pir||H71040 probable phosphoesterase (EC 3.1.-.-) PH1616 - Pyrococcus
horikoshii >gi|3258045|dbj|BAA30728.1| (AP000006) 233aa
long hypothetical protein [Pyrococcus horikoshii]
Length = 233
Score = 101 bits (248), Expect = 1e-20
Identities = 71/246 (28%), Positives = 119/246 (47%), Gaps = 19/246 (7%)
Query: 4 VAVLANIAGNLPALTAALGRIEELKEEGYEIEKYYILGNIVGLFPYPKEVIEALKNLAKS 63
+A++++I N AL A I++ I+K LG++VG P V+E ++ K
Sbjct: 6 IALISDIHSNYEALKAVWKEIKD-------IDKIVCLGDLVGYGASPDAVVELIRKEMKR 58
Query: 64 NRVKIIRGKYDQLIAMSDPHAKGPDYIDKLDLPSHLKASLKYTWEKLGHEGREYLRDLPV 123
+ IRG +D +A P + + ++++ + E E+LR+LPV
Sbjct: 59 REILCIRGNHDNAVAFGTDWGFNP----------YARYAVRWHQRTMKSENLEFLRNLPV 108
Query: 124 YLVDKIGKNEIFGVYGSPINPFDGEVLPDQPTSYYEAIMRPVKEYEMLIVASPRYPVEAM 183
L K G+ ++GSP P D + P P S + +R ++E + LIV P+ +
Sbjct: 109 RLFFKYGERSYHIIHGSPRAPLDEYLFPWLPDSEFADCLRYIRE-DDLIVGHTHVPMLKI 167
Query: 184 TMYGRVVCPGSVGFPPAREHKATFALIDAETLKAKFIEVDYDKRIIEERIRSEGLPEEII 243
RV+ PGSVG P + +A++A++ E K +F V+YD E+I GLPE +
Sbjct: 168 IGKRRVINPGSVGQPRDGDWRASYAIL-YEDGKVEFFRVEYDVETAAEKILKAGLPEFLA 226
Query: 244 RILYHG 249
L+ G
Sbjct: 227 YRLFEG 232
>pir||G72200 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982462|gb|AAD36938.1|AE001824_7 (AE001824)
conserved hypothetical protein [Thermotoga maritima]
Length = 254
Score = 92.4 bits (226), Expect = 5e-18
Identities = 69/248 (27%), Positives = 120/248 (47%), Gaps = 14/248 (5%)
Query: 4 VAVLANIAGNLPALTAALGRIEELKEEGYEIEKYYILGNIVGLFPYPKEVIEALKNLAKS 63
+A ++ GN AL A L E+++ +G +++ + LG++VG P P+ V++ +
Sbjct: 3 LAFFGDVHGNFEALKAVL---EDMENKG--VDEVFCLGDLVGYGPDPEAVVQTIME---- 53
Query: 64 NRVKIIRGKYDQLIAMSDPHAKGPDYIDKLDLPSHLKASLKYTWEKLGHEGREYLRDLPV 123
+K I G YD + S G Y + SLK++ E + RE+LR+LP
Sbjct: 54 KNIKTIMGNYDDAVGYSKESC-GCSYAPGRETEVG-DISLKWSIENTSEKTREFLRNLPK 111
Query: 124 YLVDKIGKNEIFGVYGSPINPFDGEVLPDQPTSYYEAIMRPVKEYEMLIVASPRYPVEAM 183
L ++ V+GSP+N V P+ P + I+ V+E +++ P+
Sbjct: 112 KLSFEVEGVRFLLVHGSPLNELLEYVKPNTPPDRLKKIVESVEE-NVVVNGHTHLPMVKW 170
Query: 184 TMYGRVVCPGSVGFPPAREHKATFALIDAE--TLKAKFIEVDYDKRIIEERIRSEGLPEE 241
M V+ PGS G P + +A++ ++D E T+ + + V YD + E+I GLP E
Sbjct: 171 VMGKLVLNPGSAGRPKDGDPRASYMIVDVENGTVSFEIVRVRYDVKTTVEKIARNGLPVE 230
Query: 242 IIRILYHG 249
+ +L G
Sbjct: 231 LATVLALG 238
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.141 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100523666
Number of Sequences: 2977
Number of extensions: 4413442
Number of successful extensions: 9933
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9917
Number of HSP's gapped (non-prelim): 6
length of query: 252
length of database: 189,106,746
effective HSP length: 54
effective length of query: 198
effective length of database: 156,788,448
effective search space: 31044112704
effective search space used: 31044112704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)