BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1725 (PAB1725) DE:Adenylate kinase related protein
(187 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75072 adenylate kinase related protein PAB1725 - Pyrococcu... 375 e-103
pir||C71093 hypothetical protein PH1008 - Pyrococcus horikoshii ... 281 4e-75
pir||F64474 hypothetical protein MJ1399 - Methanococcus jannasch... 164 6e-40
gb|AAK41303.1| Adenylate kinase related protein (adkA-like) [Sul... 146 2e-34
pir||F69156 conserved hypothetical protein MTH434 - Methanobacte... 144 8e-34
gi|11498991 conserved hypothetical protein [Archaeoglobus fulgid... 143 2e-33
emb|CAC11325.1| (AL445063) conserved hypothetical protein [Therm... 117 1e-25
pir||G72558 hypothetical protein APE1753 - Aeropyrum pernix (str... 113 1e-24
gb|AAG20531.1| (AE005125) Vng2452c [Halobacterium sp. NRC-1] 99 2e-20
>pir||F75072 adenylate kinase related protein PAB1725 - Pyrococcus abyssi
(strain Orsay) >gi|5458395|emb|CAB49883.1| (AJ248286)
Adenylate kinase related protein [Pyrococcus abyssi]
Length = 187
Score = 375 bits (952), Expect = e-103
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MIILLTGMPGSGKGEVAKAFKKLGIPVVSMGDAIREEAEKRGIPKTPEGLKYVSLKVREE 60
MIILLTGMPGSGKGEVAKAFKKLGIPVVSMGDAIREEAEKRGIPKTPEGLKYVSLKVREE
Sbjct: 1 MIILLTGMPGSGKGEVAKAFKKLGIPVVSMGDAIREEAEKRGIPKTPEGLKYVSLKVREE 60
Query: 61 LGPGAVAILIAPKLKNLLKKHKTVVVEGVRSPKEVEEFRKLFPNEEIKVLAIHSPPGARY 120
LGPGAVAILIAPKLKNLLKKHKTVVVEGVRSPKEVEEFRKLFPNEEIKVLAIHSPPGARY
Sbjct: 61 LGPGAVAILIAPKLKNLLKKHKTVVVEGVRSPKEVEEFRKLFPNEEIKVLAIHSPPGARY 120
Query: 121 ERMRKRGRSDDPKTWEEFLDRDKKELNFGIGEVIALADYMIVNDDSFQKFKRDIEVIIRK 180
ERMRKRGRSDDPKTWEEFLDRDKKELNFGIGEVIALADYMIVNDDSFQKFKRDIEVIIRK
Sbjct: 121 ERMRKRGRSDDPKTWEEFLDRDKKELNFGIGEVIALADYMIVNDDSFQKFKRDIEVIIRK 180
Query: 181 ILYFNHQ 187
ILYFNHQ
Sbjct: 181 ILYFNHQ 187
>pir||C71093 hypothetical protein PH1008 - Pyrococcus horikoshii
>gi|3257422|dbj|BAA30105.1| (AP000004) 186aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 186
Score = 281 bits (711), Expect = 4e-75
Identities = 134/182 (73%), Positives = 160/182 (87%)
Query: 1 MIILLTGMPGSGKGEVAKAFKKLGIPVVSMGDAIREEAEKRGIPKTPEGLKYVSLKVREE 60
MIILL GMPGSGKGEVAKAF++ GIPV+SMGDAIREEAEKRGIPKTPEGLKYVSLKVREE
Sbjct: 1 MIILLVGMPGSGKGEVAKAFRRRGIPVISMGDAIREEAEKRGIPKTPEGLKYVSLKVREE 60
Query: 61 LGPGAVAILIAPKLKNLLKKHKTVVVEGVRSPKEVEEFRKLFPNEEIKVLAIHSPPGARY 120
LGPGAVAIL PK++ ++K+ VV+EGVRSP EV+EFR+ F NE + +LAIHSPP R+
Sbjct: 61 LGPGAVAILTIPKVRGIIKRKGIVVIEGVRSPAEVQEFRREFKNERVIILAIHSPPKVRF 120
Query: 121 ERMRKRGRSDDPKTWEEFLDRDKKELNFGIGEVIALADYMIVNDDSFQKFKRDIEVIIRK 180
ER+R+RGRSDDPKTW EFLDRDKKEL FGIGEV++LADY+I+N+ +F +F+R IE ++ K
Sbjct: 121 ERLRRRGRSDDPKTWNEFLDRDKKELGFGIGEVMSLADYVILNNCTFNEFQRKIEKVVSK 180
Query: 181 IL 182
IL
Sbjct: 181 IL 182
>pir||F64474 hypothetical protein MJ1399 - Methanococcus jannaschii
>gi|1592047|gb|AAB99408.1| (U67580) alignment in
/usr/local/projects/ARG/Intergenic/ARG_R584_orf2.nr
[Methanococcus jannaschii]
Length = 197
Score = 164 bits (411), Expect = 6e-40
Identities = 80/182 (43%), Positives = 122/182 (66%), Gaps = 3/182 (1%)
Query: 1 MIILLTGMPGSGKGEVAKAFKKLGIPVVSMGDAIREEAEKRGIPKTPEGLKYVSLKVREE 60
++I +TGMPG+GK + KK +P+VSMGD +R E +KRG+ TPE + ++K+REE
Sbjct: 2 LLIGITGMPGAGKSSAYEIAKKYNLPIVSMGDVVRYETKKRGLELTPENVGNTAIKLREE 61
Query: 61 LGPGAVAILIAPKLKNLLKKHKTVVVEGVRSPKEVEEFRKLFPNEEIKVLAIHSPPGARY 120
G A+A+ ++ LK + V+VEG+RS EV FRK ++ + ++AIHS P R+
Sbjct: 62 FGNEAIAVACLKYIEENLKDKEIVIVEGIRSLYEVNYFRK---HKPLVLIAIHSSPLTRF 118
Query: 121 ERMRKRGRSDDPKTWEEFLDRDKKELNFGIGEVIALADYMIVNDDSFQKFKRDIEVIIRK 180
ER++KRGR DD WE F++RD +EL F IG IALAD+++VN+ SF+ ++ I+++
Sbjct: 119 ERLKKRGREDDSANWEVFVERDLRELGFSIGHAIALADFVVVNEKSFEDCLNQLDNILQE 178
Query: 181 IL 182
IL
Sbjct: 179 IL 180
>gb|AAK41303.1| Adenylate kinase related protein (adkA-like) [Sulfolobus
solfataricus]
Length = 188
Score = 146 bits (364), Expect = 2e-34
Identities = 81/181 (44%), Positives = 113/181 (61%), Gaps = 5/181 (2%)
Query: 2 IILLTGMPGSGKGEVAKAFKKLGIPVVSMGDAIREEAEKRGIPKTPEGLKYVSLKVREEL 61
+IL+TGMPGSGK E AK K+ G V+ M D +R+ P E L + ++RE
Sbjct: 10 VILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPG--ERLMDFAKRLREIY 67
Query: 62 GPGAVAILIAPKLKNLLKKHKTVVVEGVRSPKEVEEFRKLFPNEEIKVLAIHSPPGARYE 121
G G VA L +L H VV +GVRS EVEEF++L + + ++A+HSPP RY+
Sbjct: 68 GDGVVARLCVEELGT--SNHDLVVFDGVRSLAEVEEFKRLL-GDSVYIVAVHSPPKIRYK 124
Query: 122 RMRKRGRSDDPKTWEEFLDRDKKELNFGIGEVIALADYMIVNDDSFQKFKRDIEVIIRKI 181
RM +R RSDD K E + RD++EL GIGEVIA+ADY+I ND ++++FKR E + ++
Sbjct: 125 RMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRV 184
Query: 182 L 182
L
Sbjct: 185 L 185
>pir||F69156 conserved hypothetical protein MTH434 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621499|gb|AAB84940.1| (AE000827) UMP/CMP kinase
related protein [Methanobacterium thermoautotrophicum]
Length = 190
Score = 144 bits (359), Expect = 8e-34
Identities = 76/181 (41%), Positives = 117/181 (63%), Gaps = 9/181 (4%)
Query: 1 MIILLTGMPGSGKGEVAKAFKKLGIPVVSMGDAIREEAEKRGIPKTPEGLKYVSLKVREE 60
++I +TGMPG+GKG V++ + +G V+ MGD IR+EA KRG E ++++REE
Sbjct: 4 VVIGVTGMPGAGKGVVSRIAESMGFRVIRMGDVIRDEARKRG-----EDPGVTAVRLREE 58
Query: 61 LGPGAVAILIAPKLKNLLKKHKTVVVEGVRSPKEVEEFRKLFPNEEIKVLAIHSPPGARY 120
G VA +++ + + ++EG+RSP EVE FRK FP +V+++ S R+
Sbjct: 59 YGKYVVAEKCVERIQE--SESEMFLIEGIRSPHEVEIFRKRFPG--FRVISVFSTRKTRF 114
Query: 121 ERMRKRGRSDDPKTWEEFLDRDKKELNFGIGEVIALADYMIVNDDSFQKFKRDIEVIIRK 180
R+RKR R DD + + EF++RD++EL FGIG+VIA +DYMIVN+ K K+ + I+RK
Sbjct: 115 RRLRKRQREDDSQRYAEFVERDERELGFGIGDVIATSDYMIVNEGPIWKIKKQAKQILRK 174
Query: 181 I 181
+
Sbjct: 175 L 175
>gi|11498991 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483119|pir||B69424 conserved hypothetical protein
AF1395 - Archaeoglobus fulgidus
>gi|2649179|gb|AAB89852.1| (AE001008) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 323
Score = 143 bits (356), Expect = 2e-33
Identities = 73/180 (40%), Positives = 114/180 (62%), Gaps = 1/180 (0%)
Query: 2 IILLTGMPGSGKGEVAKAFKKLGIPVVSMGDAIREEAEKRGIPKTPEGLKYVSLKVREEL 61
+I G P SGK A+ ++LG+PVV MGD +REEA +RG+ T E L V+ ++RE+
Sbjct: 7 VIAFVGYPLSGKSTAAEVARELGLPVVVMGDVVREEAARRGLELTDENLGKVARELREKE 66
Query: 62 GPGAVAILIAPKLKNLLKKHKTVVVEGVRSPKEVEEFRKLFPNEEIKVLAIHSPPGARYE 121
G A+A PK++ LLK+H VVV+G+R EVE F+K F ++ ++AI P R+E
Sbjct: 67 GMDAIAKRCIPKIRELLKEHGVVVVDGIRGVAEVERFKKAF-GDDFVLIAIECPLEVRFE 125
Query: 122 RMRKRGRSDDPKTWEEFLDRDKKELNFGIGEVIALADYMIVNDDSFQKFKRDIEVIIRKI 181
R++ R RSDD + EE +RD++E ++G+ E + +AD+ + N S++ F I I+ K+
Sbjct: 126 RVKMRKRSDDVSSIEELKERDRREESWGLKEAMEMADFTVENTGSYEDFVEKIRQILLKL 185
>emb|CAC11325.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 197
Score = 117 bits (290), Expect = 1e-25
Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 6/169 (3%)
Query: 2 IILLTGMPGSGKGEVAKAFKKLGIPVVSMGDAIREEAEKRGIPKTPEGLKYVSLKVREEL 61
+I++TGMPG+GK E K + LG + MG+ +RE A+ GIP+ + + R++
Sbjct: 17 MIVVTGMPGAGKDEFVKVARSLGFIDLHMGNTVREFAKNAGIPEIDHEIGNFATSERKKY 76
Query: 62 GPGAVAILIAPKLKNLLKKHKTVVVEGVRSPKEVEEFRKLFPNEEIKVLAIHSPPGARYE 121
G A+ A K+ + V++G+R+ +E++ F K +E V+AI + R+
Sbjct: 77 GMDIWAVRTAQKITD----DGRTVIDGLRNYEELQYFSKF--SENPYVVAIFASRKDRFS 130
Query: 122 RMRKRGRSDDPKTWEEFLDRDKKELNFGIGEVIALADYMIVNDDSFQKF 170
R+ KR R DD +T EE ++RD +EL++GIG VIALADYMIVNDD+ + F
Sbjct: 131 RILKRDRPDDIRTMEELIERDTRELSWGIGNVIALADYMIVNDDTLETF 179
>pir||G72558 hypothetical protein APE1753 - Aeropyrum pernix (strain K1)
>gi|5105443|dbj|BAA80756.1| (AP000062) 191aa long
hypothetical protein [Aeropyrum pernix]
Length = 191
Score = 113 bits (281), Expect = 1e-24
Identities = 64/169 (37%), Positives = 104/169 (60%), Gaps = 8/169 (4%)
Query: 1 MIILLTGMPGSGKGEVAKAF-KKLGIPVVSMGDAIREEAEKRGIPKTPEGLKYVSLKVRE 59
+I+ +TG+PGSGK VA+ ++LG+ V MGD +REE +RG+ TPE ++ V+ +RE
Sbjct: 11 LIVAVTGLPGSGKSVVARIVAEELGLEVKVMGDVVREETVRRGLEPTPENVERVARMLRE 70
Query: 60 ELGPGAVAILIAPKLKNLLKKHKTVVVEGVRSPKEVEEFRKLFPNEEIKVLAIHSPPGAR 119
ELG AVA L+A + L+ ++ V++G+RS +E E + + ++ +++P R
Sbjct: 71 ELGRAAVAKLLAER----LEPGRSYVLDGLRSVEEAEVLAR--AGWRVFIIGVYAPRKQR 124
Query: 120 YERMRKRGRSDDPKTWEEFLDRDKKELNFGIGEVIALADYMIVNDDSFQ 168
ER+ +R RS + WE RD + G+GE +AL+DY+IVN S +
Sbjct: 125 LERLMRRRRSGE-TLWEVLELRDASNIELGVGEALALSDYLIVNTGSLE 172
>gb|AAG20531.1| (AE005125) Vng2452c [Halobacterium sp. NRC-1]
Length = 190
Score = 99.5 bits (244), Expect = 2e-20
Identities = 67/171 (39%), Positives = 93/171 (54%), Gaps = 7/171 (4%)
Query: 2 IILLTGMPGSGKGEVAKAFKKLGIPVVSMGDAIREEAEKRGI-PKTPEGLKYVSLKVREE 60
+I GMPGSGK E A GIPV+ MGD IR+E RG+ P G ++ +R+E
Sbjct: 3 VIGTVGMPGSGKSEAATVAANAGIPVLVMGDVIRQECRDRGLDPAQHHG--RIAQALRDE 60
Query: 61 LGPGAVAILIAPKLKNLLKKHKTVVVEGVRSPKEVEEFRKLFPNEEIKVLAIHSPPGARY 120
GPGA+A P +++ L TV+V+G+RS EV FR F ++ ++ + +P R
Sbjct: 61 HGPGAIAHQSLPIIEDHLTDATTVLVDGIRSDVEVTTFRDAF-GDDFTLVHVSAPRELRK 119
Query: 121 ERMRKRGRSDDPKTWEEFLD-RDKKELNFGIGEVIALADYMIVNDDSFQKF 170
R+ R R D T E LD R+ +E FG+ + I LAD I N DS F
Sbjct: 120 ARIEDRDRPGD--TDGEPLDAREDRERGFGMDDAIDLADVRIENTDSLDAF 168
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.141 0.396
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73093134
Number of Sequences: 2977
Number of extensions: 3097733
Number of successful extensions: 10053
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10035
Number of HSP's gapped (non-prelim): 9
length of query: 187
length of database: 189,106,746
effective HSP length: 54
effective length of query: 133
effective length of database: 156,788,448
effective search space: 20852863584
effective search space used: 20852863584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)