BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1726 (tbp) DE:transcription initiation factor IID
(191 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75072 transcription initiation factor iid PAB1726 - Pyroco... 381 e-105
sp|O58737|TF2D_PYRHO TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) ... 373 e-103
sp|Q57050|TF2D_PYRFU TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) ... 349 2e-95
pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II... 331 4e-90
pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II... 331 4e-90
sp|Q52366|TF2D_PYRKO TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) ... 330 7e-90
sp|Q56253|TF2D_THECE TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) ... 321 4e-87
emb|CAC11345.1| (AL445063) probable TATA-box binding protein (TF... 178 4e-44
emb|CAB66385.1| (AJ271331) archaeal transcription factor TBP [Me... 178 5e-44
sp|Q57930|TF2D_METJA TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) ... 176 1e-43
sp|Q55031|TF2D_SULSH TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) ... 172 3e-42
gi|11497985 transcription initiation factor IID [Archaeoglobus f... 170 9e-42
gb|AAG20365.1| (AE005110) transcription initiation factor IID; T... 167 1e-40
gi|10803661 tbpD [Halobacterium sp. NRC-1] >gi|7443539|pir||T083... 166 1e-40
gb|AAF18138.1|AF205428_1 (AF205428) TATA-box binding protein [Su... 166 1e-40
emb|CAA64405.1| (X94935) box A binding protein (BAP) [Sulfolobus... 166 1e-40
sp|O27664|TF2D_METTH TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) ... 166 2e-40
gb|AAK41225.1| TATA box binding protein, hypothetical (tfIID) [S... 162 2e-39
pir||F72572 probable TATA-box binding protein APE1862 - Aeropyru... 160 1e-38
gi|10803585 tbpB [Halobacterium sp. NRC-1] >gi|10803718|ref|NP_0... 153 2e-36
gb|AAG21034.1| (AE005169) transcription initiation factor IID; T... 152 2e-36
sp|P20227|TF2D_DROME TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 128 5e-29
gb|AAA79092.1| (U35147) TATA-box binding protein [Drosophila mel... 128 5e-29
emb|CAB40395.1| (AJ010592) TATA binding protein of transcription... 126 2e-28
gb|AAF03091.1|AF144035_1 (AF144035) transcription initiation fac... 126 2e-28
sp|O43133|TF2D_CANAL TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 124 6e-28
sp|O17488|TF2D_ARTSF TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 124 8e-28
sp|P53361|TF2D_SPOFR TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 123 1e-27
emb|CAA11000.1| (AJ222806) TBP [Bombyx mori] 123 1e-27
gb|AAA35146.1| (M26403) tata-box factor protein [Saccharomyces c... 123 2e-27
gi|6320996 TATA-binding protein (tfIId); Spt15p [Saccharomyces c... 123 2e-27
gb|AAC35362.1| (AF085685) TATA-binding protein [Lytechinus varie... 122 3e-27
sp|Q27850|TF2D_TETTH TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 122 4e-27
pdb|1TBP|A Chain A, Tata-Binding Protein (Tbp, C-Terminal 179 Am... 122 4e-27
gb|AAA79367.1| (U14410) TATA binding protein [Pneumocystis carinii] 122 4e-27
pdb|1YTB|A Chain A, Tata-Box Binding Protein (Ytbp) Complexed Wi... 122 4e-27
sp|P26354|TF2D_ACACA TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 121 5e-27
sp|P32085|TF2D_CAEEL TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 121 5e-27
gb|AAF71711.1|AF220262_1 (AF220262) TATA box-binding protein; TB... 121 5e-27
sp|P28148|TF22_ARATH TRANSCRIPTION INITIATION FACTOR TFIID-2 (TA... 121 7e-27
gb|AAA79368.1| (U14411) TATA binding protein [Pneumocystis carinii] 121 7e-27
sp|Q12731|TF2D_EMENI TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 121 7e-27
gi|11419065 TATA box binding protein [Homo sapiens] >gi|37066|em... 120 9e-27
sp|P27633|TF2D_XENLA TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 120 9e-27
sp|P29037|TF2D_MOUSE TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 120 9e-27
gi|4507379 TATA box binding protein [Homo sapiens] >gi|1351223|s... 120 9e-27
sp|P53360|TF2D_MESAU TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 120 9e-27
prf||2119243A TATA box-binding protein [Homo sapiens] 120 9e-27
gi|8850234 TATA box binding protein [Mus musculus] >gi|2052377|g... 120 9e-27
pir||S68859 transcription factor TBP - African clawed frog 120 9e-27
sp|O13270|TF2D_CHICK TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 120 9e-27
sp|P50159|TF22_MAIZE TRANSCRIPTION INITIATION FACTOR TFIID-2 (TA... 120 1e-26
gb|AAA16924.1| (L13731) TATA box-binding protein [Onchocerca vol... 120 1e-26
sp|P46272|TF2D_ACECL TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 120 1e-26
pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna 120 1e-26
pdb|1TGH|A Chain A, Human Tbp Complex With Tata Element Dna 120 2e-26
pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain... 120 2e-26
sp|P50158|TF21_MAIZE TRANSCRIPTION INITIATION FACTOR TFIID-1 (TA... 119 2e-26
pir||T03386 transcription initiation factor tbp1 - maize >gi|974... 119 2e-26
sp|Q42808|TF2D_SOYBN TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 119 2e-26
sp|P91809|TF2D_STRPU TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 119 2e-26
gb|AAC03409.1| (M34960) transcription factor IID [Homo sapiens] 119 2e-26
sp|Q92117|TF2D_TRIFL TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 119 3e-26
sp|P28147|TF21_ARATH TRANSCRIPTION INITIATION FACTOR TFIID-1 (TA... 119 3e-26
sp|Q02879|TF22_WHEAT TRANSCRIPTION INITIATION FACTOR TFIID-2 (TA... 119 3e-26
sp|Q92146|TF2D_TRIGA TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 119 3e-26
sp|P26356|TF21_WHEAT TRANSCRIPTION INITIATION FACTOR TFIID-1 (TA... 118 4e-26
sp|P17871|TF2D_SCHPO TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 118 4e-26
sp|P48511|TF2D_MESCR TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 118 4e-26
sp|P93348|TF2D_TOBAC TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 118 4e-26
gb|AAD10237.1| (AF015784) TATA-box binding protein [Phaseolus vu... 118 6e-26
gb|AAD10238.1| (AF015785) TATA-box binding protein [Phaseolus vu... 118 6e-26
sp|P26357|TF2D_SOLTU TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 117 8e-26
sp|P52653|TF2D_ENTHI TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 114 7e-25
pir||I60128 transcription factor IID - human 113 1e-24
pir||S52407 TATA box-binding protein - Entamoeba histolytica 111 7e-24
pir||S37740 transcription factor TRF - fruit fly (Drosophila mel... 110 1e-23
sp|P26355|TF2D_DICDI TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 100 2e-20
gi|10803647 tbpC [Halobacterium sp. NRC-1] >gi|7443543|pir||T083... 90 1e-17
sp|P32086|TF2D_PLAFA TRANSCRIPTION INITIATION FACTOR TFIID (TATA... 89 4e-17
gi|10803578 tbpA Similar to Pyrococcus woesei TATA-box binding p... 79 4e-14
gb|AAF71245.1| (AF221563) TA-TA binding protein 1 [Gallus gallus... 77 2e-13
gb|AAF79169.1| (AF249992) TATA-box binding protein 2 [Habrotroch... 74 1e-12
gb|AAF79168.1| (AF249991) TATA-box binding protein 1 [Habrotroch... 72 4e-12
gb|AAF79165.1|AF249988_1 (AF249988) TATA-box binding protein 1 [... 71 7e-12
gb|AAF79170.1| (AF249993) TATA-box binding protein [Brachionus p... 71 7e-12
emb|CAB41469.1| (AJ238443) TBP-like factor [Caenorhabditis elegans] 71 9e-12
gb|AAF59926.1| (AF228692) TBP-like factor [Caenorhabditis elegans] 71 9e-12
emb|CAB41467.1| (AJ238444) TBP-like factor [Brugia malayi] 71 1e-11
gb|AAF79166.1| (AF249989) TATA-box binding protein 2 [Macrotrach... 69 5e-11
gb|AAF79164.1|AF249987_1 (AF249987) TATA-box binding protein 1 [... 68 6e-11
emb|CAB41487.1| (AJ238441) TBP-like factor [Xenopus laevis] 68 8e-11
>pir||E75072 transcription initiation factor iid PAB1726 - Pyrococcus abyssi
(strain Orsay) >gi|5458394|emb|CAB49882.1| (AJ248286)
transcription initiation factor IID [Pyrococcus abyssi]
Length = 191
Score = 381 bits (969), Expect = e-105
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MVDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIF 60
MVDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIF
Sbjct: 1 MVDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIF 60
Query: 61 SSGKLVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNV 120
SSGKLVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNV
Sbjct: 61 SSGKLVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNV 120
Query: 121 ALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK 180
ALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK
Sbjct: 121 ALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK 180
Query: 181 YGLIEEEEEEL 191
YGLIEEEEEEL
Sbjct: 181 YGLIEEEEEEL 191
>sp|O58737|TF2D_PYRHO TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) (TATA SEQUENCE-BINDING
PROTEIN) (TBP) >gi|7443540|pir||D71093 probable
TATA-binding protein (transcription initiation factor
TFIID) - Pyrococcus horikoshii
>gi|3257423|dbj|BAA30106.1| (AP000004) 191aa long
hypothetical TATA-binding protein (transcription
initiation factor TFIID) [Pyrococcus horikoshii]
Length = 191
Score = 373 bits (948), Expect = e-103
Identities = 186/191 (97%), Positives = 190/191 (99%)
Query: 1 MVDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIF 60
MVDT+NVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIF
Sbjct: 1 MVDTSNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIF 60
Query: 61 SSGKLVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNV 120
SSGKLVVTGAKSI DIERAVAKLI+KLKGIGVKFKRAPLID+QNMVFSGDIGREFNLDNV
Sbjct: 61 SSGKLVVTGAKSIQDIERAVAKLIQKLKGIGVKFKRAPLIDVQNMVFSGDIGREFNLDNV 120
Query: 121 ALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK 180
ALTLPNCEYEPEQFPGVIYRVK+PRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK
Sbjct: 121 ALTLPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK 180
Query: 181 YGLIEEEEEEL 191
YGLIEEEEEEL
Sbjct: 181 YGLIEEEEEEL 191
>sp|Q57050|TF2D_PYRFU TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) (TATA SEQUENCE-BINDING
PROTEIN) (TBP) >gi|2129423|pir||A54275 TATA-binding
protein - Pyrococcus woesei >gi|11277773|pir||T47230
transcription factor aTFB [validated] - Pyrococcus
furiosus >gi|1942573|pdb|1PCZ|A Chain A, Structure Of
Tata-Binding Protein >gi|1942574|pdb|1PCZ|B Chain B,
Structure Of Tata-Binding Protein
>gi|498649|gb|AAA73447.1| (U10285) TATA-binding protein
[Pyrococcus woesei] >gi|1245168|gb|AAA93368.1| (U48392)
TATA-box binding protein [Pyrococcus furiosus]
Length = 191
Score = 349 bits (885), Expect = 2e-95
Identities = 172/191 (90%), Positives = 182/191 (95%)
Query: 1 MVDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIF 60
MVD + VKLRIENIVASVDLFAQLDLEKVLD+CPNSKYNPEEFPGIIC DDPKVALLIF
Sbjct: 1 MVDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIF 60
Query: 61 SSGKLVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNV 120
SSGKLVVTGAKS+ DIERAVAKL +KLK IGVKFKRAP ID+QNMVFSGDIGREFNLD V
Sbjct: 61 SSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVV 120
Query: 121 ALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK 180
ALTLPNCEYEPEQFPGVIYRVK+P++VILLFSSGKIVCSGAKSEADAWEAVRKLLREL+K
Sbjct: 121 ALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDK 180
Query: 181 YGLIEEEEEEL 191
YGL+EEEEEEL
Sbjct: 181 YGLLEEEEEEL 191
>pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 182
Score = 331 bits (839), Expect = 4e-90
Identities = 163/181 (90%), Positives = 172/181 (94%)
Query: 1 MVDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIF 60
MVD + VKLRIENIVASVDLFAQLDLEKVLD+CPNSKYNPEEFPGIIC DDPKVALLIF
Sbjct: 1 MVDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIF 60
Query: 61 SSGKLVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNV 120
SSGKLVVTGAKS+ DIERAVAKL +KLK IGVKFKRAP ID+QNMVFSGDIGREFNLD V
Sbjct: 61 SSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVV 120
Query: 121 ALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK 180
ALTLPNCEYEPEQFPGVIYRVK+P++VILLFSSGKIVCSGAKSEADAWEAVRKLLREL+K
Sbjct: 121 ALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDK 180
Query: 181 Y 181
Y
Sbjct: 181 Y 181
Score = 76.1 bits (184), Expect = 3e-13
Identities = 36/82 (43%), Positives = 55/82 (66%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
I+N+V S D+ + +L+ V PN +Y PE+FPG+I + DP+ +L+FSSGK+V +GA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGA 70
Query: 162 KSEADAWEAVRKLLRELEKYGL 183
KS D AV KL ++L+ G+
Sbjct: 71 KSVQDIERAVAKLAQKLKSIGV 92
>pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA-
Box Complex From Pyrococcus Woesei
Length = 181
Score = 331 bits (839), Expect = 4e-90
Identities = 163/181 (90%), Positives = 172/181 (94%)
Query: 1 MVDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIF 60
MVD + VKLRIENIVASVDLFAQLDLEKVLD+CPNSKYNPEEFPGIIC DDPKVALLIF
Sbjct: 1 MVDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIF 60
Query: 61 SSGKLVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNV 120
SSGKLVVTGAKS+ DIERAVAKL +KLK IGVKFKRAP ID+QNMVFSGDIGREFNLD V
Sbjct: 61 SSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVV 120
Query: 121 ALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK 180
ALTLPNCEYEPEQFPGVIYRVK+P++VILLFSSGKIVCSGAKSEADAWEAVRKLLREL+K
Sbjct: 121 ALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDK 180
Query: 181 Y 181
Y
Sbjct: 181 Y 181
Score = 76.1 bits (184), Expect = 3e-13
Identities = 36/82 (43%), Positives = 55/82 (66%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
I+N+V S D+ + +L+ V PN +Y PE+FPG+I + DP+ +L+FSSGK+V +GA
Sbjct: 11 IENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGA 70
Query: 162 KSEADAWEAVRKLLRELEKYGL 183
KS D AV KL ++L+ G+
Sbjct: 71 KSVQDIERAVAKLAQKLKSIGV 92
>sp|Q52366|TF2D_PYRKO TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) (TATA SEQUENCE-BINDING
PROTEIN) (TBP) >gi|2129420|pir||JC4514 TATA-binding
protein - Pyrococcus sp >gi|1405351|dbj|BAA08743.1|
(D50018) TATA binding protein [Pyrococcus sp.]
Length = 190
Score = 330 bits (837), Expect = 7e-90
Identities = 165/189 (87%), Positives = 174/189 (91%)
Query: 1 MVDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIF 60
MVD +NVKLRIENIVASVDLF L+LEKV++ICP+SKYNPEEFPGIICRFDDPKVALLIF
Sbjct: 1 MVDMSNVKLRIENIVASVDLFTDLNLEKVIEICPSSKYNPEEFPGIICRFDDPKVALLIF 60
Query: 61 SSGKLVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNV 120
SSGKLVVTGAKS+ DI+RAV KLIE LK IG KF R P IDIQNMVFSGDIG EFNLD V
Sbjct: 61 SSGKLVVTGAKSVDDIKRAVYKLIEMLKKIGAKFTREPQIDIQNMVFSGDIGMEFNLDAV 120
Query: 121 ALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK 180
AL LPNCEYEPEQFPGVIYRVK+PRAVILLFSSGKIVCSGAKSE DAWEAV+KLLRELEK
Sbjct: 121 ALILPNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEQDAWEAVKKLLRELEK 180
Query: 181 YGLIEEEEE 189
YGLIEEEEE
Sbjct: 181 YGLIEEEEE 189
>sp|Q56253|TF2D_THECE TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) (TATA SEQUENCE-BINDING
PROTEIN) (TBP) >gi|498255|gb|AAA73412.1| (U04932)
TATA-binding protein [Thermococcus celer]
Length = 189
Score = 321 bits (814), Expect = 4e-87
Identities = 160/186 (86%), Positives = 172/186 (92%)
Query: 5 NNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGK 64
+NVKLRIENIVASVDLF QL+LE+V+++CP+SKYNPEEFPGIICRFD+PKVALLIFSSGK
Sbjct: 2 SNVKLRIENIVASVDLFTQLNLERVIEMCPHSKYNPEEFPGIICRFDEPKVALLIFSSGK 61
Query: 65 LVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTL 124
LVVTGAKS+ DIERAV KLI+ LK IG KF RAP IDIQNMVFSGDIG EFNLD VAL+L
Sbjct: 62 LVVTGAKSVEDIERAVNKLIQMLKKIGAKFSRAPQIDIQNMVFSGDIGMEFNLDAVALSL 121
Query: 125 PNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLI 184
PNCEYEPEQFPGVIYRVK+PRAVILLFSSGKIVCSGAKSE DAWEAVRKLLRELEKY LI
Sbjct: 122 PNCEYEPEQFPGVIYRVKEPRAVILLFSSGKIVCSGAKSEHDAWEAVRKLLRELEKYDLI 181
Query: 185 EEEEEE 190
E EEE
Sbjct: 182 GEGEEE 187
>emb|CAC11345.1| (AL445063) probable TATA-box binding protein (TFIID homolog)
[Thermoplasma acidophilum]
Length = 184
Score = 178 bits (447), Expect = 4e-44
Identities = 89/179 (49%), Positives = 126/179 (69%), Gaps = 2/179 (1%)
Query: 8 KLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVV 67
K+ IENIVAS L LDL ++ S+Y PE+FPG+I R +PK A+LIF SGK+
Sbjct: 6 KITIENIVASTSLAEHLDLSRIALALDGSEYEPEQFPGLIYRLQEPKTAVLIFRSGKVNC 65
Query: 68 TGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALT--LP 125
TGAK+I D++R + +I+KLK ++ P I +QN+V D+ E NL ++A++ L
Sbjct: 66 TGAKNIEDVKRTIKIIIDKLKAADIEVYDDPQIIVQNIVAVYDLESELNLTDIAMSLGLE 125
Query: 126 NCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLI 184
N EYEPEQFPG++YRV++PR V+LLF SGK+VC+GAK E++ +AV K+ +EL+K GLI
Sbjct: 126 NVEYEPEQFPGLVYRVEEPRVVLLLFGSGKVVCTGAKEESEIEQAVIKVKKELQKVGLI 184
>emb|CAB66385.1| (AJ271331) archaeal transcription factor TBP [Methanococcus
thermolithotrophicus]
Length = 181
Score = 178 bits (446), Expect = 5e-44
Identities = 88/180 (48%), Positives = 127/180 (69%), Gaps = 4/180 (2%)
Query: 8 KLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVV 67
+++I N+V S + +DLE DI N++Y PE+FPG++CR DPKVALLIF SGKL
Sbjct: 4 EIKIVNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLNC 63
Query: 68 TGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPNC 127
TGAKS D E A+ K+I++LK G+ P +++QNMV + D+G E NLD+++ TL
Sbjct: 64 TGAKSKEDAEIAIKKIIKELKDAGMDIIDNPEVNVQNMVATADLGIEPNLDDIS-TLEGT 122
Query: 128 EYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIEEE 187
EYEPEQFPG++YR+ DP+ V+L+F SGK+V +G K + DA+ A+ K+L L++ +EEE
Sbjct: 123 EYEPEQFPGLVYRLSDPKVVVLIFGSGKVVITGLKKKDDAYLALDKILSTLKE---LEEE 179
Score = 88.5 bits (216), Expect = 5e-17
Identities = 41/86 (47%), Positives = 61/86 (70%)
Query: 98 PLIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIV 157
P I I N+V S IG + +L+ A L N EYEPEQFPG++ R+ DP+ +L+F SGK+
Sbjct: 3 PEIKIVNVVVSTQIGTDIDLEYAADILDNAEYEPEQFPGLVCRLSDPKVALLIFRSGKLN 62
Query: 158 CSGAKSEADAWEAVRKLLRELEKYGL 183
C+GAKS+ DA A++K+++EL+ G+
Sbjct: 63 CTGAKSKEDAEIAIKKIIKELKDAGM 88
>sp|Q57930|TF2D_METJA TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) (TATA SEQUENCE-BINDING
PROTEIN) (TBP) >gi|2129299|pir||C64363 TATA-binding
transcription initiation factor - Methanococcus
jannaschii >gi|1591210|gb|AAB98497.1| (U67500)
transcription initiation factor IID, TATA-box binding
protein [Methanococcus jannaschii]
Length = 183
Score = 176 bits (442), Expect = 1e-43
Identities = 85/173 (49%), Positives = 123/173 (70%)
Query: 8 KLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVV 67
+++I N+V S + +DLE+V I N++Y PE+FPG++CR PKVALLIF SGK+
Sbjct: 7 EIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNC 66
Query: 68 TGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPNC 127
TGAKS + E A+ K+I++LK G+ P I IQNMV + D+G E NLD++AL +
Sbjct: 67 TGAKSKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMVEGT 126
Query: 128 EYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK 180
EYEPEQFPG++YR+ DP+ V+L+F SGK+V +G KSE DA A++K+L +++
Sbjct: 127 EYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKE 179
Score = 88.2 bits (215), Expect = 6e-17
Identities = 42/94 (44%), Positives = 64/94 (67%)
Query: 98 PLIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIV 157
P I I N+V S IG +L+ VA+ L N EYEPEQFPG++ R+ P+ +L+F SGK+
Sbjct: 6 PEIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVN 65
Query: 158 CSGAKSEADAWEAVRKLLRELEKYGLIEEEEEEL 191
C+GAKS+ +A A++K+++EL+ G+ E E+
Sbjct: 66 CTGAKSKEEAEIAIKKIIKELKDAGIDVIENPEI 99
Score = 83.9 bits (204), Expect = 1e-15
Identities = 36/85 (42%), Positives = 62/85 (72%)
Query: 6 NVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKL 65
N +++I+N+VA+ DL + +L+ + + ++Y PE+FPG++ R DDPKV +LIF SGK+
Sbjct: 96 NPEIKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKV 155
Query: 66 VVTGAKSIHDIERAVAKLIEKLKGI 90
V+TG KS D +RA+ K+++ +K +
Sbjct: 156 VITGLKSEEDAKRALKKILDTIKEV 180
>sp|Q55031|TF2D_SULSH TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) (TATA SEQUENCE-BINDING
PROTEIN) (TBP) >gi|1361936|pir||S55311 TATA-binding
protein - Sulfolobus shibatae (fragment)
>gi|886020|gb|AAC43403.1| (U23419) TATA-binding protein
homolog; Method: conceptual translation supplied by
author [Sulfolobus shibatae]
Length = 198
Score = 172 bits (431), Expect = 3e-42
Identities = 92/184 (50%), Positives = 125/184 (67%), Gaps = 3/184 (1%)
Query: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
+ IENIVA+V L LDL + PN +Y+P++FPG+I R + PKV LIF SGK+VVT
Sbjct: 12 VNIENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVT 71
Query: 69 GAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPNCE 128
GAKS ++ +AV ++I+ LK G+K P I IQN+V S ++ NLD A L N
Sbjct: 72 GAKSTEELIKAVKRIIKTLKKYGIKIMGKPKIQIQNIVASANLHVNVNLDKAAFLLENNM 131
Query: 129 YEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL---LRELEKYGLIE 185
YEPEQFPG+I+R+ DPR V+L+FSSGK+V +GAK E + +AV+++ L EL+ IE
Sbjct: 132 YEPEQFPGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAELDCVKPIE 191
Query: 186 EEEE 189
EEEE
Sbjct: 192 EEEE 195
Score = 89.7 bits (219), Expect = 2e-17
Identities = 40/80 (50%), Positives = 60/80 (75%)
Query: 8 KLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVV 67
K++I+NIVAS +L ++L+K + N+ Y PE+FPG+I R DDP+V LLIFSSGK+V+
Sbjct: 102 KIQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVI 161
Query: 68 TGAKSIHDIERAVAKLIEKL 87
TGAK ++ +AV ++ +KL
Sbjct: 162 TGAKREDEVSKAVKRIFDKL 181
Score = 81.9 bits (199), Expect = 5e-15
Identities = 33/86 (38%), Positives = 64/86 (74%)
Query: 98 PLIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIV 157
P+++I+N+V + + + +L + ++PN EY+P+QFPG+I+R++ P+ L+F SGK+V
Sbjct: 10 PIVNIENIVATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMV 69
Query: 158 CSGAKSEADAWEAVRKLLRELEKYGL 183
+GAKS + +AV+++++ L+KYG+
Sbjct: 70 VTGAKSTEELIKAVKRIIKTLKKYGI 95
>gi|11497985 transcription initiation factor IID [Archaeoglobus fulgidus]
>gi|6647869|sp|O29874|TF2D_ARCFU TATA-BOX BINDING
PROTEIN (TATA-BOX FACTOR) (TATA SEQUENCE-BINDING
PROTEIN) (TBP) >gi|7443535|pir||E69296 transcription
initiation factor IID homolog - Archaeoglobus fulgidus
>gi|2650259|gb|AAB90862.1| (AE001078) transcription
initiation factor IID [Archaeoglobus fulgidus]
Length = 183
Score = 170 bits (427), Expect = 9e-42
Identities = 82/179 (45%), Positives = 123/179 (67%), Gaps = 2/179 (1%)
Query: 8 KLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVV 67
K++IEN+VAS + +DL K+ +S+Y P++FPG++ R +PK A L+F SGK+V
Sbjct: 5 KIKIENVVASTQIGENIDLNKISREIKDSEYKPKQFPGLVLRTKEPKAAALVFRSGKVVC 64
Query: 68 TGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVA--LTLP 125
TG+KS+ D RAV ++++ LK IG+ P + +QN+V S D+G + NL+ +A L L
Sbjct: 65 TGSKSVEDARRAVKQIVKMLKEIGISVIDEPEVKVQNIVASADLGVDLNLNAIAIGLGLE 124
Query: 126 NCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLI 184
N EYEPEQFPG++YR+ +PR V+L+F SGK+V +G KS DA +AV ++ EL GL+
Sbjct: 125 NIEYEPEQFPGLVYRLDNPRVVVLIFGSGKMVVTGGKSPEDARKAVERISEELRTLGLM 183
Score = 83.9 bits (204), Expect = 1e-15
Identities = 37/92 (40%), Positives = 65/92 (70%)
Query: 100 IDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCS 159
I I+N+V S IG +L+ ++ + + EY+P+QFPG++ R K+P+A L+F SGK+VC+
Sbjct: 6 IKIENVVASTQIGENIDLNKISREIKDSEYKPKQFPGLVLRTKEPKAAALVFRSGKVVCT 65
Query: 160 GAKSEADAWEAVRKLLRELEKYGLIEEEEEEL 191
G+KS DA AV+++++ L++ G+ +E E+
Sbjct: 66 GSKSVEDARRAVKQIVKMLKEIGISVIDEPEV 97
>gb|AAG20365.1| (AE005110) transcription initiation factor IID; TbpE [Halobacterium
sp. NRC-1]
Length = 186
Score = 167 bits (418), Expect = 1e-40
Identities = 84/179 (46%), Positives = 119/179 (65%), Gaps = 2/179 (1%)
Query: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
+ IEN+VAS + +LDL+ V + Y+PE+FPG++ R DPK A LIF SGK+V T
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCT 67
Query: 69 GAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVA--LTLPN 126
GAKS D+ ++ + +KL+ + +K + P I +QN+V S D+GR+ NL+ +A L L N
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELSIKVEDDPEIVVQNIVTSADLGRQLNLNAIAIGLGLEN 127
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIE 185
EYEPEQFPG++YR+ DP V LLF SGK+V +G K DA AV K+ LE+ GL++
Sbjct: 128 IEYEPEQFPGLVYRLDDPEVVALLFGSGKLVITGGKEPKDAEHAVDKITSRLEELGLLD 186
Score = 91.3 bits (223), Expect = 7e-18
Identities = 41/92 (44%), Positives = 66/92 (71%)
Query: 100 IDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCS 159
I+I+N+V S IG+E +L +VA+ L +Y+PEQFPG++YR +DP++ L+F SGKIVC+
Sbjct: 8 INIENVVASTGIGQELDLQSVAMDLEGADYDPEQFPGLVYRTQDPKSAALIFRSGKIVCT 67
Query: 160 GAKSEADAWEAVRKLLRELEKYGLIEEEEEEL 191
GAKS D E++R + +L + + E++ E+
Sbjct: 68 GAKSTDDVHESLRIVFDKLRELSIKVEDDPEI 99
>gi|10803661 tbpD [Halobacterium sp. NRC-1] >gi|7443539|pir||T08331 TATA-binding
transcription initiation factor homolog tbpD -
Halobacterium sp. (strain NRC-1) plasmid pNRC100
>gi|2822392|gb|AAC82898.1| (AF016485) tbpD
[Halobacterium sp. NRC-1]
Length = 186
Score = 166 bits (417), Expect = 1e-40
Identities = 81/179 (45%), Positives = 121/179 (67%), Gaps = 2/179 (1%)
Query: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
++IEN+VAS DL +L LE++ P ++YNP +FPG+I R DDPK A LIF SGK V T
Sbjct: 8 IQIENVVASTDLSQELALEQLATDLPGAEYNPGDFPGVIYRLDDPKSATLIFDSGKAVCT 67
Query: 69 GAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVA--LTLPN 126
GA+S+ D+ A++ ++E L+ +G+ +P + +QN+V SG + ++ NL+ +A L L +
Sbjct: 68 GAQSVDDVHDAISIVVEDLRDLGIDIPPSPPVHVQNIVCSGSLDQDLNLNAIAIGLGLED 127
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIE 185
EYEPEQFPG++YR+ DP V+LLF SGK+V +G + DA A+ + L GL+E
Sbjct: 128 VEYEPEQFPGLVYRLNDPDVVVLLFGSGKLVITGGSNPDDAHHALEIIHERLTDLGLLE 186
>gb|AAF18138.1|AF205428_1 (AF205428) TATA-box binding protein [Sulfolobus acidocaldarius]
Length = 197
Score = 166 bits (417), Expect = 1e-40
Identities = 86/182 (47%), Positives = 123/182 (67%)
Query: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
+ IENIVA+V L LDL + PN +Y+P++FPG+I R + PK+ LIF SGK+VVT
Sbjct: 12 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVT 71
Query: 69 GAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPNCE 128
GAKS ++ +AV ++I+ LK G++ P I IQN+V S ++ NLD A L N
Sbjct: 72 GAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNM 131
Query: 129 YEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIEEEE 188
YEPEQFPG+IYR+ +PR V+L+FSSGK+V +GAK E + +AV+K+ +L + ++ E
Sbjct: 132 YEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVELDCVKPVE 191
Query: 189 EE 190
EE
Sbjct: 192 EE 193
Score = 89.3 bits (218), Expect = 3e-17
Identities = 41/84 (48%), Positives = 61/84 (71%)
Query: 4 TNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSG 63
T K++I+NIVAS +L ++L+K + N+ Y PE+FPG+I R D+P+V LLIFSSG
Sbjct: 98 TGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSG 157
Query: 64 KLVVTGAKSIHDIERAVAKLIEKL 87
K+V+TGAK ++ +AV K+ +KL
Sbjct: 158 KMVITGAKREDEVHKAVKKIFDKL 181
Score = 77.3 bits (187), Expect = 1e-13
Identities = 32/85 (37%), Positives = 63/85 (73%)
Query: 99 LIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVC 158
+++I+N+V + + + +L + ++PN EY+P+QFPG+I+R++ P+ L+F SGK+V
Sbjct: 11 VVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVV 70
Query: 159 SGAKSEADAWEAVRKLLRELEKYGL 183
+GAKS + +AV+++++ L+KYG+
Sbjct: 71 TGAKSTDELIKAVKRIIKTLKKYGM 95
>emb|CAA64405.1| (X94935) box A binding protein (BAP) [Sulfolobus acidocaldarius]
Length = 198
Score = 166 bits (417), Expect = 1e-40
Identities = 86/182 (47%), Positives = 123/182 (67%)
Query: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
+ IENIVA+V L LDL + PN +Y+P++FPG+I R + PK+ LIF SGK+VVT
Sbjct: 13 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVT 72
Query: 69 GAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPNCE 128
GAKS ++ +AV ++I+ LK G++ P I IQN+V S ++ NLD A L N
Sbjct: 73 GAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNM 132
Query: 129 YEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIEEEE 188
YEPEQFPG+IYR+ +PR V+L+FSSGK+V +GAK E + +AV+K+ +L + ++ E
Sbjct: 133 YEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVELDCVKPVE 192
Query: 189 EE 190
EE
Sbjct: 193 EE 194
Score = 89.3 bits (218), Expect = 3e-17
Identities = 41/84 (48%), Positives = 61/84 (71%)
Query: 4 TNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSG 63
T K++I+NIVAS +L ++L+K + N+ Y PE+FPG+I R D+P+V LLIFSSG
Sbjct: 99 TGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSG 158
Query: 64 KLVVTGAKSIHDIERAVAKLIEKL 87
K+V+TGAK ++ +AV K+ +KL
Sbjct: 159 KMVITGAKREDEVHKAVKKIFDKL 182
Score = 77.3 bits (187), Expect = 1e-13
Identities = 32/85 (37%), Positives = 63/85 (73%)
Query: 99 LIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVC 158
+++I+N+V + + + +L + ++PN EY+P+QFPG+I+R++ P+ L+F SGK+V
Sbjct: 12 VVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVV 71
Query: 159 SGAKSEADAWEAVRKLLRELEKYGL 183
+GAKS + +AV+++++ L+KYG+
Sbjct: 72 TGAKSTDELIKAVKRIIKTLKKYGM 96
>sp|O27664|TF2D_METTH TATA-BOX BINDING PROTEIN (TATA-BOX FACTOR) (TATA SEQUENCE-BINDING
PROTEIN) (TBP) >gi|7443536|pir||D69084 TATA-binding
transcription initiation factor - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622753|gb|AAB86100.1| (AE000921) TATA-binding
transcription initiation factor [Methanobacterium
thermoautotrophicum]
Length = 181
Score = 166 bits (416), Expect = 2e-40
Identities = 85/179 (47%), Positives = 117/179 (64%)
Query: 6 NVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKL 65
+V ++IENIVAS L +DL+ V + N +N E+FPG++ + +PK A LIF SGKL
Sbjct: 3 DVDIKIENIVASATLGKSIDLQTVAEALENVDFNREQFPGLVYKLKEPKTAALIFGSGKL 62
Query: 66 VVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLP 125
V TGAKSI D +RA+ ++ ++ + I IQN+V S ++G+ NL+ VAL L
Sbjct: 63 VCTGAKSIEDSKRAIKLTVDMMRTMDPDIPEEFEIKIQNIVASANLGKPLNLEAVALGLE 122
Query: 126 NCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLI 184
N EYEPEQFPG++YR+ DP+ V+LLF SGK+VC+GAKS DA V K L + LI
Sbjct: 123 NTEYEPEQFPGLVYRLDDPKVVLLLFGSGKVVCTGAKSAEDAKLGVEKTKARLAELDLI 181
>gb|AAK41225.1| TATA box binding protein, hypothetical (tfIID) [Sulfolobus
solfataricus]
Length = 181
Score = 162 bits (407), Expect = 2e-39
Identities = 87/178 (48%), Positives = 120/178 (66%), Gaps = 3/178 (1%)
Query: 15 VASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGAKSIH 74
+A+V L LDL + PN +Y+P++FPG+I R + PKV LIF SGK+VVTGAKS
Sbjct: 1 MATVTLEQSLDLYAMERSIPNIEYDPDQFPGLIFRLEQPKVTALIFKSGKMVVTGAKSTE 60
Query: 75 DIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQF 134
++ +AV ++I+ LK G+K P I IQN+V S ++ NLD A L N YEPEQF
Sbjct: 61 ELIKAVKRIIKTLKKYGIKIVGKPKIQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQF 120
Query: 135 PGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL---LRELEKYGLIEEEEE 189
PG+I+R+ DPR V+L+FSSGK+V +GAK E + +AV+++ L EL+ IEEEEE
Sbjct: 121 PGLIFRMDDPRVVLLIFSSGKMVITGAKREDEVSKAVKRIFDKLAELDCVKPIEEEEE 178
Score = 89.7 bits (219), Expect = 2e-17
Identities = 40/80 (50%), Positives = 60/80 (75%)
Query: 8 KLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVV 67
K++I+NIVAS +L ++L+K + N+ Y PE+FPG+I R DDP+V LLIFSSGK+V+
Sbjct: 85 KIQIQNIVASANLHVNVNLDKAAFLLENNMYEPEQFPGLIFRMDDPRVVLLIFSSGKMVI 144
Query: 68 TGAKSIHDIERAVAKLIEKL 87
TGAK ++ +AV ++ +KL
Sbjct: 145 TGAKREDEVSKAVKRIFDKL 164
>pir||F72572 probable TATA-box binding protein APE1862 - Aeropyrum pernix
(strain K1) >gi|5105554|dbj|BAA80867.1| (AP000062) 222aa
long hypothetical TATA-box binding protein [Aeropyrum
pernix]
Length = 222
Score = 160 bits (400), Expect = 1e-38
Identities = 79/173 (45%), Positives = 119/173 (68%)
Query: 8 KLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVV 67
+++IENIVA+V L QLDL + + YNP++FPG++ R + P+V +LIF SGK+V+
Sbjct: 41 EVKIENIVATVILENQLDLNLIETKIQDVDYNPDQFPGLVYRLESPRVTVLIFKSGKMVI 100
Query: 68 TGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPNC 127
TGAKSI+ + V KL++ G+ P I IQN+V S ++ +L+ AL N
Sbjct: 101 TGAKSINQLIHVVKKLLKAFADQGIPISGKPQIQIQNIVASANLKVYIDLEKAALEFENS 160
Query: 128 EYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEK 180
YEPEQFPG+IYR+ +PR V+L+FSSGK+V +GAK E + ++AV+K+ R+L++
Sbjct: 161 LYEPEQFPGLIYRMDEPRVVMLIFSSGKMVITGAKMENEVYDAVKKVARKLKE 213
Score = 69.5 bits (167), Expect = 3e-11
Identities = 32/93 (34%), Positives = 57/93 (60%)
Query: 91 GVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILL 150
GV+ P + I+N+V + + + +L+ + + + +Y P+QFPG++YR++ PR +L+
Sbjct: 33 GVEGLPKPEVKIENIVATVILENQLDLNLIETKIQDVDYNPDQFPGLVYRLESPRVTVLI 92
Query: 151 FSSGKIVCSGAKSEADAWEAVRKLLRELEKYGL 183
F SGK+V +GAKS V+KLL+ G+
Sbjct: 93 FKSGKMVITGAKSINQLIHVVKKLLKAFADQGI 125
>gi|10803585 tbpB [Halobacterium sp. NRC-1] >gi|10803718|ref|NP_046116.1| tbpB
[Halobacterium sp. NRC-1] >gi|7443538|pir||T08255
TATA-binding transcription initiation factor homolog
tbpB - Halobacterium sp. (strain NRC-1) plasmid pNRC100
>gi|11277771|pir||T44922 TATA box binding protein
[validated] - Halobacterium salinarum
>gi|1070345|emb|CAA63691.1| (X93206) TATA box binding
protein [Halobacterium salinarum]
>gi|2822316|gb|AAC82822.1| (AF016485) tbpB
[Halobacterium sp. NRC-1] >gi|2822449|gb|AAC82955.1|
(AF016485) tbpB [Halobacterium sp. NRC-1]
>gi|10584112|gb|AAG20743.1| (AE005143) transcription
initiation factor IID; TbpB_1 [Halobacterium sp. NRC-1]
>gi|10584490|gb|AAG21065.1| (AE005171) transcription
initiation factor IID; TbpB_2 [Halobacterium sp. NRC-1]
Length = 186
Score = 153 bits (382), Expect = 2e-36
Identities = 75/179 (41%), Positives = 118/179 (65%), Gaps = 2/179 (1%)
Query: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
+ IEN+VAS DL +L L+++ P ++YNPE+FPG++ R +PK A LIF SGK+V T
Sbjct: 8 IHIENVVASSDLGQELALDQLSTDLPGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCT 67
Query: 69 GAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVA--LTLPN 126
GAKS+ D+ A+ + ++ +G+ P I++QN+V S + + NL+ +A L L
Sbjct: 68 GAKSVDDVHEALGIVFGDIRELGIDVTSNPPIEVQNIVSSASLEQSLNLNAIAIGLGLEQ 127
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIE 185
EYEPEQFPG++YR+ DP V+LLF SGK+V +G ++ +A +A+ + L + GL++
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGGQNPDEAEQALAHVQDRLTELGLLD 186
Score = 88.5 bits (216), Expect = 5e-17
Identities = 39/87 (44%), Positives = 60/87 (68%)
Query: 97 APLIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKI 156
A I I+N+V S D+G+E LD ++ LP EY PE FPGV+YR+++P++ L+F SGK+
Sbjct: 5 ADTIHIENVVASSDLGQELALDQLSTDLPGAEYNPEDFPGVVYRLQEPKSATLIFRSGKV 64
Query: 157 VCSGAKSEADAWEAVRKLLRELEKYGL 183
VC+GAKS D EA+ + ++ + G+
Sbjct: 65 VCTGAKSVDDVHEALGIVFGDIRELGI 91
Score = 69.9 bits (168), Expect = 2e-11
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
Query: 4 TNNVKLRIENIVASVDLFAQLDLEKV---LDICPNSKYNPEEFPGIICRFDDPKVALLIF 60
T+N + ++NIV+S L L+L + L + +Y PE+FPG++ R DDP V +L+F
Sbjct: 94 TSNPPIEVQNIVSSASLEQSLNLNAIAIGLGL-EQIEYEPEQFPGLVYRLDDPDVVVLLF 152
Query: 61 SSGKLVVTGAKSIHDIERAVAKLIEKLKGIGV 92
SGKLV+TG ++ + E+A+A + ++L +G+
Sbjct: 153 GSGKLVITGGQNPDEAEQALAHVQDRLTELGL 184
>gb|AAG21034.1| (AE005169) transcription initiation factor IID; TbpF [Halobacterium
sp. NRC-1]
Length = 186
Score = 152 bits (381), Expect = 2e-36
Identities = 77/179 (43%), Positives = 115/179 (64%), Gaps = 2/179 (1%)
Query: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
+ IEN+VAS DL +L L+++ ++YNPE+FPG++ R +PK A LIF SGK+V T
Sbjct: 8 IHIENVVASSDLGQELALDQLATDLDGAEYNPEDFPGVVYRLQEPKSATLIFRSGKVVCT 67
Query: 69 GAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVA--LTLPN 126
GAKS+ + A+ + + L+ +G+ P + +QN+V S + + NL+ +A L L
Sbjct: 68 GAKSVDAVHDALEIVFDDLRELGIDVDSTPPVKVQNIVSSASLEQSLNLNAIAIGLGLEQ 127
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIE 185
EYEPEQFPG++YR+ DP V+LLF SGK+V +GA ADA A+ + L + GL+E
Sbjct: 128 IEYEPEQFPGLVYRLDDPDVVVLLFGSGKLVITGAAESADAQHALAHVNDRLTELGLLE 186
Score = 83.9 bits (204), Expect = 1e-15
Identities = 38/87 (43%), Positives = 58/87 (65%)
Query: 97 APLIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKI 156
A I I+N+V S D+G+E LD +A L EY PE FPGV+YR+++P++ L+F SGK+
Sbjct: 5 ADTIHIENVVASSDLGQELALDQLATDLDGAEYNPEDFPGVVYRLQEPKSATLIFRSGKV 64
Query: 157 VCSGAKSEADAWEAVRKLLRELEKYGL 183
VC+GAKS +A+ + +L + G+
Sbjct: 65 VCTGAKSVDAVHDALEIVFDDLRELGI 91
>sp|P20227|TF2D_DROME TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) (TATA-BOX BINDING
PROTEIN) >gi|85157|pir||A35615 transcription initiation
factor IID - fruit fly (Drosophila melanogaster)
>gi|158532|gb|AAA28926.1| (M38388)
TATA-consensus-binding transcription factor TFII
[Drosophila melanogaster] >gi|158542|gb|AAA28931.1|
(M38082) TATA-box binding protein [Drosophila
melanogaster] >gi|515665|gb|AAA68629.1| (U11718)
TATA-box binding protein [Drosophila melanogaster]
>gi|7291324|gb|AAF46754.1| (AE003454) Tbp gene product
[Drosophila melanogaster]
Length = 353
Score = 128 bits (318), Expect = 5e-29
Identities = 76/176 (43%), Positives = 110/176 (62%), Gaps = 8/176 (4%)
Query: 10 RIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTG 69
+++NIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFSSGK+V TG
Sbjct: 178 QLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 237
Query: 70 AKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN 126
AKS D R A++I+KL G KF IQNMV S D+ L+ + LT N
Sbjct: 238 AKSEDDSRLAARKYARIIQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHCN 293
Query: 127 -CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKY 181
YEPE FPG+IYR+ PR V+L+F SGK+V +GAK + ++A K+ L+K+
Sbjct: 294 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 349
Score = 74.9 bits (181), Expect = 6e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 179 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 238
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 239 KSEDDSRLAARKYARIIQKLG 259
>gb|AAA79092.1| (U35147) TATA-box binding protein [Drosophila melanogaster]
Length = 354
Score = 128 bits (318), Expect = 5e-29
Identities = 76/176 (43%), Positives = 110/176 (62%), Gaps = 8/176 (4%)
Query: 10 RIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTG 69
+++NIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFSSGK+V TG
Sbjct: 179 QLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 238
Query: 70 AKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN 126
AKS D R A++I+KL G KF IQNMV S D+ L+ + LT N
Sbjct: 239 AKSEDDSRLAARKYARIIQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHCN 294
Query: 127 -CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKY 181
YEPE FPG+IYR+ PR V+L+F SGK+V +GAK + ++A K+ L+K+
Sbjct: 295 FSSYEPELFPGLIYRMVRPRIVLLIFVSGKVVLTGAKVRQEIYDAFDKIFPILKKF 350
Score = 74.9 bits (181), Expect = 6e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 180 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 239
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 240 KSEDDSRLAARKYARIIQKLG 260
>emb|CAB40395.1| (AJ010592) TATA binding protein of transcription factor IID
[Guillardia theta] >gi|6690140|gb|AAF24005.1|AF083031_2
(AF083031) transcription initiation factor IID TATA
binding protein [Guillardia theta]
Length = 249
Score = 126 bits (314), Expect = 2e-28
Identities = 75/183 (40%), Positives = 106/183 (56%), Gaps = 5/183 (2%)
Query: 2 VDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFS 61
V N + I+N+V++V L QLDL+++ N++YNP F +I R DPK LIFS
Sbjct: 66 VRANEITPNIQNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIRDPKTTALIFS 125
Query: 62 SGKLVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLID--IQNMVFSGDIGREFNLDN 119
SGK+VVTGAKS A K ++ +G + A ID IQN+V S D+ L++
Sbjct: 126 SGKMVVTGAKSEDSARVACKKYARIIQRLG--YGHAKFIDFRIQNIVASCDVRFPIRLES 183
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLREL 178
+A C YEPE FPG+IYR+ P+ V+L+F SGK+V +GAK D ++A + L
Sbjct: 184 LAHAHNQFCSYEPELFPGLIYRMITPKVVLLIFVSGKLVLTGAKQRNDIFQAFSNIYSVL 243
Query: 179 EKY 181
Y
Sbjct: 244 CLY 246
Score = 72.6 bits (175), Expect = 3e-12
Identities = 35/82 (42%), Positives = 53/82 (63%)
Query: 101 DIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSG 160
+IQN+V + +G + +L +AL N EY P +F VI R++DP+ L+FSSGK+V +G
Sbjct: 74 NIQNVVSTVSLGIQLDLKRIALKARNAEYNPRRFAAVIMRIRDPKTTALIFSSGKMVVTG 133
Query: 161 AKSEADAWEAVRKLLRELEKYG 182
AKSE A A +K R +++ G
Sbjct: 134 AKSEDSARVACKKYARIIQRLG 155
>gb|AAF03091.1|AF144035_1 (AF144035) transcription initiation factor TFIID [Nosema locustae]
Length = 259
Score = 126 bits (313), Expect = 2e-28
Identities = 72/172 (41%), Positives = 102/172 (58%), Gaps = 2/172 (1%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++N+VA+V+L +LDL+ + N++YNP+ F +I R DPK LIF+SGK+VVTGA
Sbjct: 86 LQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 145
Query: 71 KSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN-CEY 129
KS + A K + +G K A IQN+V S D L+ +A N C Y
Sbjct: 146 KSEQTSKLAAQKFSRIIHKLGFNTKFAD-FKIQNIVSSCDTQFSIRLEGLAFAHSNFCSY 204
Query: 130 EPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKY 181
EPE FPG+IYR+ P+ V+L+F SGKIV +GAK + +EA + L +Y
Sbjct: 205 EPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKMRDEIYEAFDNIYPVLTQY 256
Score = 67.9 bits (163), Expect = 8e-11
Identities = 36/97 (37%), Positives = 59/97 (60%)
Query: 86 KLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPR 145
++KG + K L +QN+V + ++ + +L +AL N EY P++F VI R++DP+
Sbjct: 70 EIKGQDMYRKSDILPALQNVVATVNLNCKLDLKAIALRARNAEYNPKRFAAVIMRIRDPK 129
Query: 146 AVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYG 182
L+F+SGK+V +GAKSE + A +K R + K G
Sbjct: 130 TTALIFASGKMVVTGAKSEQTSKLAAQKFSRIIHKLG 166
>sp|O43133|TF2D_CANAL TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|2708495|gb|AAC49985.1| (U95549) TATA-binding protein
[Candida albicans] >gi|2708497|gb|AAC49986.1| (U95550)
TATA-binding protein [Candida albicans]
Length = 238
Score = 124 bits (309), Expect = 6e-28
Identities = 77/177 (43%), Positives = 108/177 (60%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIVA+V+L +LDL+ + N++YNP+ F +I R DPK LIF+SGK+VVTGA
Sbjct: 65 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 124
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS D + R A++I+KL G KF IQN+V S D+ L+ +A
Sbjct: 125 KSEDDSKLASRKYARIIQKL-GFNAKFCD---FKIQNIVGSTDVKFAIRLEGLAFAHGTF 180
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEA---DAWEAVRKLLRELEK 180
YEPE FPG+IYR+ P+ V+L+F SGKIV +GAK DA+E++ +L E K
Sbjct: 181 SSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKKREEIYDAFESIYPVLNEFRK 237
Score = 69.9 bits (168), Expect = 2e-11
Identities = 34/81 (41%), Positives = 53/81 (64%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ +L +AL N EY P++F VI R++DP+ L+F+SGK+V +GA
Sbjct: 65 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVVTGA 124
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 125 KSEDDSKLASRKYARIIQKLG 145
>sp|O17488|TF2D_ARTSF TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|2623958|emb|CAA05488.1| (AJ002478) TATA-binding
protein [Artemia franciscana]
Length = 275
Score = 124 bits (308), Expect = 8e-28
Identities = 76/177 (42%), Positives = 108/177 (60%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
+ENIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFSSGK+V TGA
Sbjct: 103 LENIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 162
Query: 71 KSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS D R A++++KL G KF IQNMV S D+ L+ + LT
Sbjct: 163 KSEEDSRLAARKYARIVQKL-GFSAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQF 218
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEA---DAWEAVRKLLRELEK 180
YEPE FPG+IYR+ PR V+L+F SGK+V +GAK DA+E + +L+ +K
Sbjct: 219 SSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFENIYPILKGFKK 275
Score = 77.3 bits (187), Expect = 1e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
++N+V + ++G +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 103 LENIVSTVNLGCRLDLKKIALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 162
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 163 KSEEDSRLAARKYARIVQKLG 183
>sp|P53361|TF2D_SPOFR TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|349117|gb|AAA62394.1| (L22538) DNA-binding protein
[Spodoptera frugiperda]
Length = 307
Score = 123 bits (306), Expect = 1e-27
Identities = 74/176 (42%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 10 RIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTG 69
+++NIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFSSGK+V TG
Sbjct: 133 QLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 192
Query: 70 AKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN 126
AKS D R A++I+KL G KF IQNMV S D+ L+ + LT
Sbjct: 193 AKSEEDSRLAARKYARIIQKL-GFTAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQ 248
Query: 127 -CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKY 181
YEPE FPG+IYR+ PR V+L+F SGK+V +GAK + +EA + L+ +
Sbjct: 249 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFDNIYPILKSF 304
Score = 76.5 bits (185), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 134 LQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 193
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 194 KSEEDSRLAARKYARIIQKLG 214
>emb|CAA11000.1| (AJ222806) TBP [Bombyx mori]
Length = 307
Score = 123 bits (306), Expect = 1e-27
Identities = 74/176 (42%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 10 RIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTG 69
+++NIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFSSGK+V TG
Sbjct: 133 QLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 192
Query: 70 AKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN 126
AKS D R A++I+KL G KF IQNMV S D+ L+ + LT
Sbjct: 193 AKSEEDSRLAARKYARIIQKL-GFTAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHGQ 248
Query: 127 -CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKY 181
YEPE FPG+IYR+ PR V+L+F SGK+V +GAK + +EA + L+ +
Sbjct: 249 FSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVREEIYEAFDNIYPILKSF 304
Score = 76.5 bits (185), Expect = 2e-13
Identities = 37/84 (44%), Positives = 56/84 (66%)
Query: 99 LIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVC 158
L +QN+V + ++ + +L +AL N EY P++F VI R+++PR L+FSSGK+VC
Sbjct: 131 LPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 190
Query: 159 SGAKSEADAWEAVRKLLRELEKYG 182
+GAKSE D+ A RK R ++K G
Sbjct: 191 TGAKSEEDSRLAARKYARIIQKLG 214
>gb|AAA35146.1| (M26403) tata-box factor protein [Saccharomyces cerevisiae]
Length = 240
Score = 123 bits (305), Expect = 2e-27
Identities = 77/184 (41%), Positives = 111/184 (59%), Gaps = 11/184 (5%)
Query: 4 TNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSG 63
T+ + ++NIVA+V L +LDL+ V N++YNP+ F +I R +PK LIF+SG
Sbjct: 60 TSGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 119
Query: 64 KLVVTGAKSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNV 120
K+VVTGAKS D + R A++I+K+ G KF IQN+V S D+ L+ +
Sbjct: 120 KMVVTGAKSEDDSKLASRKYARIIQKI-GFAAKFTD---FKIQNIVGSCDVKFPIRLEGL 175
Query: 121 ALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLR 176
A + YEPE FPG+IYR+ P+ V+L+F SGKIV +GAK + A+EA+ +L
Sbjct: 176 AFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLS 235
Query: 177 ELEK 180
E K
Sbjct: 236 EFRK 239
Score = 70.6 bits (170), Expect = 1e-11
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + +G +L VAL N EY P++F VI R+++P+ L+F+SGK+V +GA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 127 KSEDDSKLASRKYARIIQKIG 147
>gi|6320996 TATA-binding protein (tfIId); Spt15p [Saccharomyces cerevisiae]
>gi|135643|sp|P13393|TF2D_YEAST TRANSCRIPTION INITIATION
FACTOR TFIID (TATA-BOX FACTOR) (TATA SEQUENCE-BINDING
PROTEIN) (TBP) (TRANSCRIPTION FACTOR D)
>gi|83563|pir||A30366 transcription initiation factor
IID - yeast (Saccharomyces cerevisiae)
>gi|4610|emb|CAA34751.1| (X16860) transcription factor
IID (AA 1-240) [Saccharomyces cerevisiae]
>gi|171132|gb|AAA34458.1| (M29459) TATA box factor
[Saccharomyces cerevisiae] >gi|172901|gb|AAA35147.1|
(M27135) TATA-binding protein [Saccharomyces cerevisiae]
>gi|603388|gb|AAB64675.1| (U18917) Spt15p: TATA-box
binding protein tfIId [Saccharomyces cerevisiae]
>gi|226502|prf||1515352A transcription initiation factor
TFIID [Saccharomyces cerevisiae]
Length = 240
Score = 123 bits (305), Expect = 2e-27
Identities = 77/184 (41%), Positives = 111/184 (59%), Gaps = 11/184 (5%)
Query: 4 TNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSG 63
T+ + ++NIVA+V L +LDL+ V N++YNP+ F +I R +PK LIF+SG
Sbjct: 60 TSGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASG 119
Query: 64 KLVVTGAKSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNV 120
K+VVTGAKS D + R A++I+K+ G KF IQN+V S D+ L+ +
Sbjct: 120 KMVVTGAKSEDDSKLASRKYARIIQKI-GFAAKFTD---FKIQNIVGSCDVKFPIRLEGL 175
Query: 121 ALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLR 176
A + YEPE FPG+IYR+ P+ V+L+F SGKIV +GAK + A+EA+ +L
Sbjct: 176 AFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLS 235
Query: 177 ELEK 180
E K
Sbjct: 236 EFRK 239
Score = 70.6 bits (170), Expect = 1e-11
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + +G +L VAL N EY P++F VI R+++P+ L+F+SGK+V +GA
Sbjct: 67 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 126
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 127 KSEDDSKLASRKYARIIQKIG 147
>gb|AAC35362.1| (AF085685) TATA-binding protein [Lytechinus variegatus]
Length = 271
Score = 122 bits (303), Expect = 3e-27
Identities = 71/183 (38%), Positives = 111/183 (59%), Gaps = 8/183 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +L+L+K+ N++YNP+ F +I R +P+ LIFSS
Sbjct: 89 ESSGIVPQLQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 148
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS D R A++++KL G KF IQNMV S D+ L+
Sbjct: 149 GKMVCTGAKSEDDSRLAARKYARVVQKL-GFAAKFLD---FKIQNMVGSCDVKFPIRLEG 204
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLREL 178
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK + ++A + L
Sbjct: 205 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPIL 264
Query: 179 EKY 181
+ +
Sbjct: 265 KSF 267
Score = 75.7 bits (183), Expect = 4e-13
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 97 LQNIVSTVNLSCKLELKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 156
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 157 KSEDDSRLAARKYARVVQKLG 177
>sp|Q27850|TF2D_TETTH TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) >gi|482247|pir||S41473
transcription initiation factor IID - Tetrahymena
thermophila >gi|349811|gb|AAC14470.1| (L16957)
TATA-binding protein [Tetrahymena thermophila]
Length = 246
Score = 122 bits (302), Expect = 4e-27
Identities = 74/176 (42%), Positives = 110/176 (62%), Gaps = 8/176 (4%)
Query: 10 RIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTG 69
+++NIV++V+L +LDL+++ N++YNP+ F +I R DPK LIF+SGK+V TG
Sbjct: 52 KLQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTG 111
Query: 70 AKSIHDIERAV---AKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN 126
AK+ D RA AK+I+K+ G V+FK IQN+V S D+ NLD++
Sbjct: 112 AKTEEDSNRAARKYAKIIQKI-GFPVQFKD---FKIQNIVGSTDVKFPINLDHLEQDHKK 167
Query: 127 -CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKY 181
+YEPE FPG IYR + + V+L+F SGKIV +GAK+ + +A +K+ L Y
Sbjct: 168 FVQYEPEIFPGKIYREFNTKIVLLIFVSGKIVLTGAKTRENINKAFQKIYWVLYNY 223
Score = 74.5 bits (180), Expect = 8e-13
Identities = 33/81 (40%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R++DP+ L+F+SGK+VC+GA
Sbjct: 53 LQNIVSTVNLSTKLDLKQIALRARNAEYNPKRFAAVIMRLRDPKTTALIFASGKMVCTGA 112
Query: 162 KSEADAWEAVRKLLRELEKYG 182
K+E D+ A RK + ++K G
Sbjct: 113 KTEEDSNRAARKYAKIIQKIG 133
>pdb|1TBP|A Chain A, Tata-Binding Protein (Tbp, C-Terminal 179 Amino Acids)
>gi|494633|pdb|1TBP|B Chain B, Tata-Binding Protein
(Tbp, C-Terminal 179 Amino Acids)
Length = 180
Score = 122 bits (302), Expect = 4e-27
Identities = 76/177 (42%), Positives = 108/177 (60%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIVA+V L +LDL+ V N++YNP+ F +I R +PK LIF+SGK+VVTGA
Sbjct: 7 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 66
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS D + R A++I+K+ G KF IQN+V S D+ L+ +A +
Sbjct: 67 KSEDDSKLASRKYARIIQKI-GFAAKFTD---FKIQNIVGSCDVKFPIRLEGLAFSHGTF 122
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEK 180
YEPE FPG+IYR+ P+ V+L+F SGKIV +GAK + A+EA+ +L E K
Sbjct: 123 SSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 179
Score = 70.6 bits (170), Expect = 1e-11
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + +G +L VAL N EY P++F VI R+++P+ L+F+SGK+V +GA
Sbjct: 7 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 66
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 67 KSEDDSKLASRKYARIIQKIG 87
>gb|AAA79367.1| (U14410) TATA binding protein [Pneumocystis carinii]
Length = 230
Score = 122 bits (302), Expect = 4e-27
Identities = 76/177 (42%), Positives = 109/177 (60%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIVA+V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+VVTGA
Sbjct: 56 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 115
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS D + R A++I+KL G KF IQN+V S D+ L+ +A +
Sbjct: 116 KSEDDSKLASRKYARIIQKL-GFNAKFTD---FKIQNIVGSCDVKFPIRLEGLAYSHGTF 171
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEK 180
YEPE FPG+IYR+ P+ V+L+F SGKIV +GAK + A+EA+ +L E K
Sbjct: 172 SSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFRK 228
Score = 68.3 bits (164), Expect = 6e-11
Identities = 33/81 (40%), Positives = 53/81 (64%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ +L +AL N EY P++F VI R+++P+ L+F+SGK+V +GA
Sbjct: 56 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 115
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 116 KSEDDSKLASRKYARIIQKLG 136
>pdb|1YTB|A Chain A, Tata-Box Binding Protein (Ytbp) Complexed With Dna
Containing Tata-Box >gi|999661|pdb|1YTB|B Chain B,
Tata-Box Binding Protein (Ytbp) Complexed With Dna
Containing Tata-Box >gi|1633307|pdb|1YTF|A Chain A,
Yeast TfiiaTBPDNA COMPLEX >gi|5822424|pdb|1TBA|B Chain
B, Solution Structure Of A Tbp-Tafii230 Complex: Protein
Mimicry Of The Minor Groove Surface Of The Tata Box
Unwound By Tbp, Nmr, 25 Structures
Length = 180
Score = 122 bits (302), Expect = 4e-27
Identities = 76/177 (42%), Positives = 108/177 (60%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIVA+V L +LDL+ V N++YNP+ F +I R +PK LIF+SGK+VVTGA
Sbjct: 7 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 66
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS D + R A++I+K+ G KF IQN+V S D+ L+ +A +
Sbjct: 67 KSEDDSKLASRKYARIIQKI-GFAAKFTD---FKIQNIVGSCDVKFPIRLEGLAFSHGTF 122
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEK 180
YEPE FPG+IYR+ P+ V+L+F SGKIV +GAK + A+EA+ +L E K
Sbjct: 123 SSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRK 179
Score = 70.6 bits (170), Expect = 1e-11
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + +G +L VAL N EY P++F VI R+++P+ L+F+SGK+V +GA
Sbjct: 7 LQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 66
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 67 KSEDDSKLASRKYARIIQKIG 87
>sp|P26354|TF2D_ACACA TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) >gi|283449|pir||JQ1666
transcription initiation factor IID - Acanthamoeba
castellanii >gi|5593|emb|CAA44843.1| (X63133) TFIID
[Acanthamoeba castellanii] >gi|155636|gb|AAA27712.1|
(M93340) transcription factor [Acanthamoeba castellanii]
>gi|155638|gb|AAA27713.1| (M87493) TFIID [Acanthamoeba
castellanii]
Length = 258
Score = 121 bits (301), Expect = 5e-27
Identities = 72/175 (41%), Positives = 105/175 (59%), Gaps = 8/175 (4%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 85 LQNIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 144
Query: 71 KSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS R A++I+KL G KF IQN+V S D+ L+ +A +
Sbjct: 145 KSEEASRLAARKYARIIQKL-GFAAKFLD---FKIQNIVGSCDVRFPIRLEGLAFAHNHY 200
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKY 181
C YEPE FPG+IYR+ P+ V+L+F SGKIV +GAK + +EA + L +Y
Sbjct: 201 CSYEPELFPGLIYRMVQPKIVLLIFVSGKIVLTGAKVREEIYEAFENIYPVLTEY 255
Score = 75.7 bits (183), Expect = 4e-13
Identities = 35/81 (43%), Positives = 56/81 (68%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L N+AL N EY P++F VI R+++P+ L+F+SGK+VC+GA
Sbjct: 85 LQNIVSTVNLGCKLDLKNIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 144
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 145 KSEEASRLAARKYARIIQKLG 165
>sp|P32085|TF2D_CAEEL TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) >gi|539423|pir||A48671
transcription initiation factor IID - Caenorhabditis
elegans >gi|156448|gb|AAA03582.1| (L07754) TATA-box
binding protein [Caenorhabditis elegans]
>gi|500715|gb|AAA19055.1| (U10401) highly similar to
transcription initiation factor TFIID, TATA-box factor
[Caenorhabditis elegans]
Length = 340
Score = 121 bits (301), Expect = 5e-27
Identities = 68/161 (42%), Positives = 100/161 (61%), Gaps = 2/161 (1%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L QLDL+K+ N++YNP+ F +I R +P+ LIFSSGK+V TGA
Sbjct: 168 LQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 227
Query: 71 KSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN-CEY 129
KS A K ++ +G + K + +QNMV S D+ L+ + +T Y
Sbjct: 228 KSEEASRLAARKYARIVQKLGFQAKFTEFM-VQNMVGSCDVRFPIQLEGLCITHSQFSTY 286
Query: 130 EPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEA 170
EPE FPG+IYR+ PR V+L+F SGK+V +GAK++ D EA
Sbjct: 287 EPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKTKRDIDEA 327
Score = 77.3 bits (187), Expect = 1e-13
Identities = 37/85 (43%), Positives = 57/85 (66%)
Query: 98 PLIDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIV 157
P+ +QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+V
Sbjct: 164 PMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMV 223
Query: 158 CSGAKSEADAWEAVRKLLRELEKYG 182
C+GAKSE + A RK R ++K G
Sbjct: 224 CTGAKSEEASRLAARKYARIVQKLG 248
>gb|AAF71711.1|AF220262_1 (AF220262) TATA box-binding protein; TBP [Drosophila virilis]
Length = 349
Score = 121 bits (301), Expect = 5e-27
Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 2/173 (1%)
Query: 10 RIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTG 69
+++NIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFSSGK+V TG
Sbjct: 174 QLQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAPVIMRIREPRTTALIFSSGKMVCTG 233
Query: 70 AKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN-CE 128
AK D A K ++ +G + K L IQNMV D+ L+ + LT N
Sbjct: 234 AKGEDDSRLAARKYARIIQKLGFRAKFLDL-KIQNMVGLCDVKFPIRLEGLVLTHCNFSR 292
Query: 129 YEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKY 181
YEPE FPG+IYR+ PR V+LL + GK+V +GAK + ++A K+ L+K+
Sbjct: 293 YEPELFPGLIYRMVRPRIVLLLPAPGKVVLTGAKVRQEIYDAFDKIFSILKKF 345
Score = 72.6 bits (175), Expect = 3e-12
Identities = 35/81 (43%), Positives = 54/81 (66%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 175 LQNIVSTVNLCCKLDLKKIALHARNAEYNPKRFAPVIMRIREPRTTALIFSSGKMVCTGA 234
Query: 162 KSEADAWEAVRKLLRELEKYG 182
K E D+ A RK R ++K G
Sbjct: 235 KGEDDSRLAARKYARIIQKLG 255
>sp|P28148|TF22_ARATH TRANSCRIPTION INITIATION FACTOR TFIID-2 (TATA-BOX FACTOR 2) (TATA
SEQUENCE-BINDING PROTEIN 2) (TBP-2)
>gi|99764|pir||S10945 transcription initiation factor
IID (clone At-1) - Arabidopsis thaliana
>gi|16546|emb|CAA38742.1| (X54995) transcription
initiation factor II [Arabidopsis thaliana]
>gi|4204264|gb|AAD10645.1| (AC005223) 43453 [Arabidopsis
thaliana] >gi|227073|prf||1613452A transcription
initiation factor TFIID-1 [Arabidopsis thaliana]
Length = 200
Score = 121 bits (300), Expect = 7e-27
Identities = 75/177 (42%), Positives = 110/177 (61%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS H + R A++++KL G KFK IQN+V S D+ L+ +A +
Sbjct: 85 KSEHLSKLAARKYARIVQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHSAF 140
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEK 180
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + A+E + +LRE K
Sbjct: 141 SSYEPELFPGLIYRMKLPKIVLLIFVSGKIVITGAKMREETYTAFENIYPVLREFRK 197
Score = 68.7 bits (165), Expect = 5e-11
Identities = 33/81 (40%), Positives = 54/81 (65%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R+++P+ L+F+SGK+VC+GA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 85 KSEHLSKLAARKYARIVQKLG 105
>gb|AAA79368.1| (U14411) TATA binding protein [Pneumocystis carinii]
Length = 229
Score = 121 bits (300), Expect = 7e-27
Identities = 76/177 (42%), Positives = 109/177 (60%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIVA+V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+VVTGA
Sbjct: 55 LQNIVATVNLDCRLDLKTIALQRRNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 114
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS D + R A++I+KL G KF IQN+V S D+ L+ +A +
Sbjct: 115 KSEDDSKLASRKYARIIQKL-GFNAKFTD---FKIQNIVGSCDVKFPIRLEGLAYSHGTF 170
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEK 180
YEPE FPG+IYR+ P+ V+L+F SGKIV +GAK + A+EA+ +L E K
Sbjct: 171 SSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLNEFRK 227
Score = 68.3 bits (164), Expect = 6e-11
Identities = 33/81 (40%), Positives = 53/81 (64%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ +L +AL N EY P++F VI R+++P+ L+F+SGK+V +GA
Sbjct: 55 LQNIVATVNLDCRLDLKTIALQRRNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 114
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 115 KSEDDSKLASRKYARIIQKLG 135
>sp|Q12731|TF2D_EMENI TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|887878|gb|AAB57874.1| (U28332) TATA-box binding
protein [Aspergillus nidulans] >gi|887880|gb|AAB57876.1|
(U28333) TATA-box binding protein [Aspergillus nidulans]
Length = 268
Score = 121 bits (300), Expect = 7e-27
Identities = 73/164 (44%), Positives = 102/164 (61%), Gaps = 8/164 (4%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIVA+V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+VVTGA
Sbjct: 95 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 154
Query: 71 KSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS D R A++I+KL G KF IQN+V S DI L+ +A N
Sbjct: 155 KSEDDSKLASRKYARIIQKL-GFNAKFTD---FKIQNIVGSCDIKFPIRLEGLASRHHNF 210
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEA 170
YEPE FPG+IYR+ P+ V+L+F SGKIV +GAK + ++A
Sbjct: 211 SSYEPELFPGLIYRMMKPKIVLLIFVSGKIVLTGAKVREEIYQA 254
Score = 68.3 bits (164), Expect = 6e-11
Identities = 33/81 (40%), Positives = 53/81 (64%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ +L +AL N EY P++F VI R+++P+ L+F+SGK+V +GA
Sbjct: 95 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGA 154
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE D+ A RK R ++K G
Sbjct: 155 KSEDDSKLASRKYARIIQKLG 175
>gi|11419065 TATA box binding protein [Homo sapiens] >gi|37066|emb|CAA38736.1|
(X54993) TFIID [Homo sapiens] >gi|227072|prf||1613451A
TATA binding factor TFIID [Homo sapiens]
Length = 335
Score = 120 bits (299), Expect = 9e-27
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 153 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 212
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 213 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 268
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 269 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 324
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 161 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 220
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 221 KSEEQSRLAARKYARVVQKLG 241
>sp|P27633|TF2D_XENLA TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) >gi|2119951|pir||I51648
transcription initiation factor IID - African clawed
frog >gi|65149|emb|CAA46832.1| (X66033) transcription
factor [Xenopus laevis]
Length = 297
Score = 120 bits (299), Expect = 9e-27
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 115 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 174
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 175 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 230
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 231 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 286
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 123 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 182
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 183 KSEEQSRLAARKYARVVQKLG 203
>sp|P29037|TF2D_MOUSE TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) >gi|423594|pir||S34437
transcription initiation factor IID - mouse
>gi|220612|dbj|BAA00840.1| (D01034) TFIID [Mus musculus]
Length = 316
Score = 120 bits (299), Expect = 9e-27
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 134 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 193
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 194 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 249
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 250 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 305
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 142 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 201
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 202 KSEEQSRLAARKYARVVQKLG 222
>gi|4507379 TATA box binding protein [Homo sapiens]
>gi|1351223|sp|P20226|TF2D_HUMAN TRANSCRIPTION
INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) >gi|1070666|pir||TWHU2D
transcription initiation factor IID - human
>gi|339492|gb|AAA36731.1| (M55654) TATA-box binding
protein [Homo sapiens] >gi|3790134|emb|CAA20286.1|
(AL031259) dJ191N21.2 (TATA box binding factor) [Homo
sapiens]
Length = 339
Score = 120 bits (299), Expect = 9e-27
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 157 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 216
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 217 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 272
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 273 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 328
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 165 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 224
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 225 KSEEQSRLAARKYARVVQKLG 245
>sp|P53360|TF2D_MESAU TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|493654|dbj|BAA06287.1| (D30051) hamster TBP
[Mesocricetus auratus]
Length = 318
Score = 120 bits (299), Expect = 9e-27
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 136 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 195
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 196 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 251
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 252 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 307
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 144 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 203
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 204 KSEEQSRLAARKYARVVQKLG 224
>prf||2119243A TATA box-binding protein [Homo sapiens]
Length = 338
Score = 120 bits (299), Expect = 9e-27
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 156 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 215
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 216 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 271
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 272 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 327
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 164 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 223
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 224 KSEEQSRLAARKYARVVQKLG 244
>gi|8850234 TATA box binding protein [Mus musculus] >gi|2052377|gb|AAB53097.1|
(U63933) transcription factor IID [Mus musculus
domesticus]
Length = 318
Score = 120 bits (299), Expect = 9e-27
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 136 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 195
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 196 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 251
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 252 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 307
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 144 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 203
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 204 KSEEQSRLAARKYARVVQKLG 224
>pir||S68859 transcription factor TBP - African clawed frog
Length = 297
Score = 120 bits (299), Expect = 9e-27
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 115 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 174
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 175 GKIVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 230
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 231 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 286
Score = 78.0 bits (189), Expect = 7e-14
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGKIVC+GA
Sbjct: 123 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKIVCTGA 182
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 183 KSEEQSRLAARKYARVVQKLG 203
>sp|O13270|TF2D_CHICK TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) >gi|7443533|pir||JC5513
transcription initiation factor IID - chicken
>gi|2145309|dbj|BAA20296.1| (D83126) TBP0 [Gallus
gallus] >gi|2145310|dbj|BAA20297.1| (D83127) TBP1
[Gallus gallus] >gi|2145320|dbj|BAA20298.1| (D83135) TBP
[Gallus gallus]
Length = 302
Score = 120 bits (299), Expect = 9e-27
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 120 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 179
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 180 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 235
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 236 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 291
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 187
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 188 KSEEQSRLAARKYARVVQKLG 208
>sp|P50159|TF22_MAIZE TRANSCRIPTION INITIATION FACTOR TFIID-2 (TATA-BOX FACTOR 2) (TATA
SEQUENCE-BINDING PROTEIN 2) (TBP-2)
>gi|2119950|pir||S61088 transcription initiation factor
IID.2 - maize >gi|293906|gb|AAA65942.1| (L13302)
TATA-binding protein [Zea mays]
Length = 200
Score = 120 bits (298), Expect = 1e-26
Identities = 72/180 (40%), Positives = 109/180 (60%), Gaps = 8/180 (4%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTL-PN 126
KS + R A++I+KL G KFK IQN+V S D+ L+ +A +
Sbjct: 85 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAF 140
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIEE 186
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + + A + L ++ I++
Sbjct: 141 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLSEFRKIQQ 200
>gb|AAA16924.1| (L13731) TATA box-binding protein [Onchocerca volvulus]
Length = 179
Score = 120 bits (298), Expect = 1e-26
Identities = 70/168 (41%), Positives = 102/168 (60%), Gaps = 8/168 (4%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L LDL+K+ N++YNP+ F +I R +P+ LIFSSGK+V TGA
Sbjct: 7 LQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 66
Query: 71 KSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS R A++++KL G KF +QNMV S D+ L+ + LT
Sbjct: 67 KSEESSRLAARKYARIVQKL-GFNAKFTE---FKVQNMVGSCDVRFPIQLEGLCLTHTQF 122
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
YEPE FPG+IYR+ PR V+L+F SGK+V +GAK + D +A ++
Sbjct: 123 STYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFNQI 170
Score = 75.3 bits (182), Expect = 5e-13
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 7 LQNIVSTVNLGVPLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 66
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 67 KSEESSRLAARKYARIVQKLG 87
>sp|P46272|TF2D_ACECL TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|2654376|emb|CAA82267.1| (Z28644) TATA box binding
protein [Acetabularia cliftonii]
Length = 191
Score = 120 bits (298), Expect = 1e-26
Identities = 68/175 (38%), Positives = 104/175 (58%), Gaps = 8/175 (4%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++N+V++V+L L+L+++ N++YNP+ F +I R DPK LIF SGK+V TGA
Sbjct: 18 LQNVVSTVNLGCTLELKEIAMQARNAEYNPKRFAAVIMRIRDPKTTALIFGSGKMVCTGA 77
Query: 71 KSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS D R AK+++KL G KF IQN+V S D+ ++ +A
Sbjct: 78 KSEQDSRTAARKYAKIVQKL-GFPAKFTE---FKIQNIVGSCDVKFPIRMEPLAYQHQQF 133
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKY 181
C YEPE FPG+IYR+ P+ V+L+F SGK+V +GAK + + A ++ L ++
Sbjct: 134 CSYEPELFPGLIYRMLQPKIVLLIFVSGKVVLTGAKERTEIYRAFEQIYPVLTQF 188
Score = 76.1 bits (184), Expect = 3e-13
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 101 DIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSG 160
++QN+V + ++G L +A+ N EY P++F VI R++DP+ L+F SGK+VC+G
Sbjct: 17 ELQNVVSTVNLGCTLELKEIAMQARNAEYNPKRFAAVIMRIRDPKTTALIFGSGKMVCTG 76
Query: 161 AKSEADAWEAVRKLLRELEKYG 182
AKSE D+ A RK + ++K G
Sbjct: 77 AKSEQDSRTAARKYAKIVQKLG 98
>pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna
Length = 179
Score = 120 bits (298), Expect = 1e-26
Identities = 71/169 (42%), Positives = 104/169 (61%), Gaps = 8/169 (4%)
Query: 10 RIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTG 69
+++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSSGK+V TG
Sbjct: 6 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 65
Query: 70 AKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN 126
AKS + R A++++KL G KF IQNMV S D+ L+ + LT
Sbjct: 66 AKSEENSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHQQ 121
Query: 127 -CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 122 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 170
Score = 77.3 bits (187), Expect = 1e-13
Identities = 36/81 (44%), Positives = 56/81 (68%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 7 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 66
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE ++ A RK R ++K G
Sbjct: 67 KSEENSRLAARKYARVVQKLG 87
>pdb|1TGH|A Chain A, Human Tbp Complex With Tata Element Dna
Length = 185
Score = 120 bits (297), Expect = 2e-26
Identities = 71/169 (42%), Positives = 103/169 (60%), Gaps = 8/169 (4%)
Query: 10 RIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTG 69
+++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSSGK+V TG
Sbjct: 10 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 69
Query: 70 AKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN 126
AKS R A++++KL G KF IQNMV S D+ L+ + LT
Sbjct: 70 AKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHQQ 125
Query: 127 -CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 126 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 174
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 11 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 70
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 71 KSEEQSRLAARKYARVVQKLG 91
>pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib
Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
>gi|6980710|pdb|1C9B|F Chain F, Crystal Structure Of A
Human Tbp Core Domain-Human Tfiib Core Domain Complex
Bound To An Extended, Modified Adenoviral Major Late
Promoter (Admlp) >gi|6980712|pdb|1C9B|J Chain J, Crystal
Structure Of A Human Tbp Core Domain-Human Tfiib Core
Domain Complex Bound To An Extended, Modified Adenoviral
Major Late Promoter (Admlp) >gi|6980714|pdb|1C9B|N Chain
N, Crystal Structure Of A Human Tbp Core Domain-Human
Tfiib Core Domain Complex Bound To An Extended, Modified
Adenoviral Major Late Promoter (Admlp)
>gi|6980716|pdb|1C9B|R Chain R, Crystal Structure Of A
Human Tbp Core Domain-Human Tfiib Core Domain Complex
Bound To An Extended, Modified Adenoviral Major Late
Promoter (Admlp)
Length = 180
Score = 120 bits (297), Expect = 2e-26
Identities = 71/169 (42%), Positives = 103/169 (60%), Gaps = 8/169 (4%)
Query: 10 RIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTG 69
+++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSSGK+V TG
Sbjct: 7 QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTG 66
Query: 70 AKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN 126
AKS R A++++KL G KF IQNMV S D+ L+ + LT
Sbjct: 67 AKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEGLVLTHQQ 122
Query: 127 -CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 123 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 171
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 8 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 67
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 68 KSEEQSRLAARKYARVVQKLG 88
>sp|P50158|TF21_MAIZE TRANSCRIPTION INITIATION FACTOR TFIID-1 (TATA-BOX FACTOR 1) (TATA
SEQUENCE-BINDING PROTEIN 1) (TBP-1)
>gi|100928|pir||S21140 transcription initiation factor
IID.1 - maize >gi|293904|gb|AAA65941.1| (L13301)
TATA-binding protein [Zea mays]
Length = 200
Score = 119 bits (296), Expect = 2e-26
Identities = 71/180 (39%), Positives = 109/180 (60%), Gaps = 8/180 (4%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTL-PN 126
KS + R A++I+KL G KFK IQN+V S D+ L+ +A +
Sbjct: 85 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAF 140
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIEE 186
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + + A + L ++ +++
Sbjct: 141 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEFRKVQQ 200
>pir||T03386 transcription initiation factor tbp1 - maize
>gi|974216|emb|CAA62224.1| (X90652) TATA-box binding
protein [Zea mays]
Length = 215
Score = 119 bits (296), Expect = 2e-26
Identities = 71/180 (39%), Positives = 109/180 (60%), Gaps = 8/180 (4%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTL-PN 126
KS + R A++I+KL G KFK IQN+V S D+ L+ +A +
Sbjct: 85 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAF 140
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIEE 186
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + + A + L ++ +++
Sbjct: 141 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLAEFRKVQQ 200
>sp|Q42808|TF2D_SOYBN TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|1220522|gb|AAA91948.1| (L28002) TATA-box binding
protein [Glycine max]
Length = 200
Score = 119 bits (296), Expect = 2e-26
Identities = 75/177 (42%), Positives = 108/177 (60%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R DPK LIF+SGK+V TGA
Sbjct: 25 LQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 84
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS + R A++I+KL G KFK IQN+V S D+ L+ +A +
Sbjct: 85 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAF 140
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEK 180
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 141 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
Score = 73.4 bits (177), Expect = 2e-12
Identities = 34/81 (41%), Positives = 54/81 (65%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R++DP+ L+F+SGK+VC+GA
Sbjct: 25 LQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 84
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 85 KSEQQSKLAARKYARIIQKLG 105
>sp|P91809|TF2D_STRPU TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|1840134|gb|AAB47272.1| (U86586) TATA binding protein
[Strongylocentrotus purpuratus]
Length = 265
Score = 119 bits (296), Expect = 2e-26
Identities = 70/183 (38%), Positives = 110/183 (59%), Gaps = 8/183 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+K+ N++YNP+ F +I R +P+ LIFSS
Sbjct: 83 ESSGIVPQLQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSS 142
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAK + R A++++KL G KF IQNMV S D+ L+
Sbjct: 143 GKMVCTGAKREDNSRLAARKYARVVQKL-GFAAKFLD---FKIQNMVGSCDVKFPIRLEG 198
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLREL 178
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK + ++A + L
Sbjct: 199 LVLTHGQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFNNIYPIL 258
Query: 179 EKY 181
+ +
Sbjct: 259 KSF 261
Score = 71.8 bits (173), Expect = 5e-12
Identities = 34/81 (41%), Positives = 53/81 (64%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 91 LQNIVSTVNLNCRLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 150
Query: 162 KSEADAWEAVRKLLRELEKYG 182
K E ++ A RK R ++K G
Sbjct: 151 KREDNSRLAARKYARVVQKLG 171
>gb|AAC03409.1| (M34960) transcription factor IID [Homo sapiens]
Length = 339
Score = 119 bits (296), Expect = 2e-26
Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 157 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRRRNAEYNPKRFAAVIMRIREPRTTALIFSS 216
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 217 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 272
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK A+ +EA +
Sbjct: 273 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENI 328
Score = 76.5 bits (185), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 165 LQNIVSTVNLGCKLDLKTIALRRRNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 224
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 225 KSEEQSRLAARKYARVVQKLG 245
>sp|Q92117|TF2D_TRIFL TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|1483195|dbj|BAA06555.1| (D31777) TATA-box binding
protein [Protobothrops flavoviridis]
Length = 300
Score = 119 bits (295), Expect = 3e-26
Identities = 70/176 (39%), Positives = 106/176 (59%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 118 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 177
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 178 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 233
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK + +EA +
Sbjct: 234 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENI 289
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 126 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 185
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 186 KSEEQSRLAARKYARVVQKLG 206
>sp|P28147|TF21_ARATH TRANSCRIPTION INITIATION FACTOR TFIID-1 (TATA-BOX FACTOR 1) (TATA
SEQUENCE-BINDING PROTEIN 1) (TBP-1)
>gi|99763|pir||S10946 transcription initiation factor
IID (clone At-2) - Arabidopsis thaliana
>gi|1943466|pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp
(Dimer) >gi|7245909|pdb|1QNE|B Chain B, Crystal
Structure Of The Adenovirus Major Late Promoter Tata Box
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). >gi|1943467|pdb|1VOK|B Chain B, Arabidopsis Thaliana
Tbp (Dimer) >gi|7245867|pdb|1QN6|B Chain B, Crystal
Structure Of The T(-26) Adenovirus Major Late Promoter
Tata Box Variant Bound To Wild-Type Tbp (Arabidopsis
Thaliana Tbp Isoform 2). Tata Element Recognition By The
Tata Box-Binding Protein Has Been Conserved Throughout
Evolution. >gi|7245897|pdb|1QNB|B Chain B, Crystal
Structure Of The T(-25) Adenovirus Major Late Promoter
Tata Box Variant Bound To Wild-Type Tbp (Arabidopsis
Thaliana Tbp Isoform 2). Tata Element Recognition By The
Tata Box-Binding Protein Has Been Conserved Throughout
Evolution. >gi|1943469|pdb|1VOL|B Chain B, Tfiib (Human
Core Domain)TBP (A.THALIANA)TATA ELEMENT Ternary Complex
>gi|7245908|pdb|1QNE|A Chain A, Crystal Structure Of The
Adenovirus Major Late Promoter Tata Box Bound To
Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform 2).
>gi|7245879|pdb|1QN8|B Chain B, Crystal Structure Of The
T(-28) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245903|pdb|1QNC|B Chain B, Crystal Structure Of The
A(-31) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245891|pdb|1QNA|B Chain B, Crystal Structure Of The
T(-30) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245861|pdb|1QN5|B Chain B, Crystal Structure Of The
G(-26) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7246011|pdb|1QN4|B Chain B, Crystal Structure Of The
T(-24) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245885|pdb|1QN9|B Chain B, Crystal Structure Of The
C(-29) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245939|pdb|1QN3|B Chain B, Crystal Structure Of The
C(-25) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245872|pdb|1QN7|A Chain A, Crystal Structure Of The
T(-27) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245873|pdb|1QN7|B Chain B, Crystal Structure Of The
T(-27) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245866|pdb|1QN6|A Chain A, Crystal Structure Of The
T(-26) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245860|pdb|1QN5|A Chain A, Crystal Structure Of The
G(-26) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245896|pdb|1QNB|A Chain A, Crystal Structure Of The
T(-25) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245902|pdb|1QNC|A Chain A, Crystal Structure Of The
A(-31) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7246010|pdb|1QN4|A Chain A, Crystal Structure Of The
T(-24) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245884|pdb|1QN9|A Chain A, Crystal Structure Of The
C(-29) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245938|pdb|1QN3|A Chain A, Crystal Structure Of The
C(-25) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245878|pdb|1QN8|A Chain A, Crystal Structure Of The
T(-28) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|7245890|pdb|1QNA|A Chain A, Crystal Structure Of The
T(-30) Adenovirus Major Late Promoter Tata Box Variant
Bound To Wild-Type Tbp (Arabidopsis Thaliana Tbp Isoform
2). Tata Element Recognition By The Tata Box-Binding
Protein Has Been Conserved Throughout Evolution.
>gi|16548|emb|CAA38743.1| (X54996) transcription
initiation factor II [Arabidopsis thaliana]
>gi|9280296|dbj|BAB01751.1| (AP000603) transcription
initiation factor TFIID-1 (TATA-box factor 1) (TATA
sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana] >gi|227074|prf||1613452B transcription
initiation factor TFIID-2 [Arabidopsis thaliana]
Length = 200
Score = 119 bits (295), Expect = 3e-26
Identities = 72/181 (39%), Positives = 110/181 (59%), Gaps = 10/181 (5%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 71 KSIHDIE----RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALT-LP 125
KS D R A++++KL G KFK IQN+V S D+ L+ +A +
Sbjct: 85 KS-EDFSKMAARKYARIVQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHAA 139
Query: 126 NCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIE 185
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + ++A + L ++ I+
Sbjct: 140 FSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKIQ 199
Query: 186 E 186
+
Sbjct: 200 Q 200
>sp|Q02879|TF22_WHEAT TRANSCRIPTION INITIATION FACTOR TFIID-2 (TATA-BOX FACTOR 2) (TATA
SEQUENCE-BINDING PROTEIN 2) (TBP-2)
>gi|422014|pir||S30216 transcription initiation factor
IID - wheat >gi|21877|emb|CAA79268.1| (Z18804) DNA
binding protein [Triticum aestivum]
>gi|170778|gb|AAA34307.1| (L07604) DNA-binding protein
[Triticum aestivum]
Length = 201
Score = 119 bits (295), Expect = 3e-26
Identities = 70/180 (38%), Positives = 109/180 (59%), Gaps = 8/180 (4%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 26 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 85
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTL-PN 126
KS + R A++I+KL G KFK IQN+V S D+ L+ +A +
Sbjct: 86 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVASCDVKFPIRLEGLAYSHGAF 141
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKYGLIEE 186
YEPE FPG+IYR++ P+ V+L+F SGKIV +GAK + + A + L ++ +++
Sbjct: 142 SSYEPELFPGLIYRMRQPKIVLLIFVSGKIVLTGAKVREETYSAFENIYPVLTEFRKVQQ 201
>sp|Q92146|TF2D_TRIGA TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) >gi|1079365|pir||JC4059
transcription initiation factor IID - Indian green tree
viper >gi|808897|dbj|BAA06554.1| (D31776) TATA-box
binding protein [Trimeresurus gramineus]
>gi|1483197|dbj|BAA06560.1| (D31782) TATA-box binding
protein [Trimeresurus gramineus]
Length = 302
Score = 119 bits (295), Expect = 3e-26
Identities = 70/176 (39%), Positives = 106/176 (59%), Gaps = 8/176 (4%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 120 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSS 179
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 180 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 235
Query: 120 VALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
+ LT YEPE FPG+IYR+ PR V+L+F SGK+V +GAK + +EA +
Sbjct: 236 LVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENI 291
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 128 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 187
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 188 KSEEQSRLAARKYARVVQKLG 208
>sp|P26356|TF21_WHEAT TRANSCRIPTION INITIATION FACTOR TFIID-1 (TATA-BOX FACTOR 1) (TATA
SEQUENCE-BINDING PROTEIN 1) (TBP-1)
>gi|283028|pir||S23522 transcription initiation factor
IID - wheat >gi|21875|emb|CAA42531.1| (X59874) TATA
binding protein (TFIID) [Triticum aestivum]
Length = 233
Score = 118 bits (293), Expect = 4e-26
Identities = 71/175 (40%), Positives = 106/175 (60%), Gaps = 8/175 (4%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+++ N++YNP+ F +I R DPK LIF+SGK+V TGA
Sbjct: 58 LQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 117
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTL-PN 126
KS + R A++++KL G FK IQN+V S D+ L+ +A +
Sbjct: 118 KSEEHSKLAARKYARIVQKL-GFPATFKD---FKIQNIVASCDVKFPIRLEGLAYSHGAF 173
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKY 181
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + + A + L +Y
Sbjct: 174 SSYEPELFPGLIYRMKQPKIVLLVFVSGKIVLTGAKVRDEIYAAFENIYPVLTEY 228
Score = 72.2 bits (174), Expect = 4e-12
Identities = 34/81 (41%), Positives = 53/81 (64%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ +L +AL N EY P++F VI R++DP+ L+F+SGK+VC+GA
Sbjct: 58 LQNIVSTVNLDCRLDLKQIALQARNAEYNPKRFAAVIMRIRDPKTTALIFASGKMVCTGA 117
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 118 KSEEHSKLAARKYARIVQKLG 138
>sp|P17871|TF2D_SCHPO TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) >gi|280421|pir||A35873
transcription initiation factor IID [similarity] -
fission yeast (Schizosaccharomyces pombe)
>gi|295936|emb|CAA37494.1| (X53415) TFIID
[Schizosaccharomyces pombe] >gi|1044934|emb|CAA91430.1|
(Z66525) transcription initiation factor tfiid
[Schizosaccharomyces pombe] >gi|6723895|emb|CAB66471.1|
(AL136538) transcription initiation factor tfiid
[Schizosaccharomyces pombe] >gi|226987|prf||1612348A
transcription factor IID [Schizosaccharomyces pombe]
Length = 231
Score = 118 bits (293), Expect = 4e-26
Identities = 74/178 (41%), Positives = 107/178 (59%), Gaps = 11/178 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIVA+V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+VV G
Sbjct: 58 LQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRIREPKSTALIFASGKMVVLGG 117
Query: 71 KSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS D R A++I+KL G KF IQN+V S D+ L+ +A +
Sbjct: 118 KSEDDSKLASRKYARIIQKL-GFNAKFTD---FKIQNIVGSCDVKFPIRLEGLAYSHGTF 173
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEKY 181
YEPE FPG+IYR+ P+ V+L+F SGKIV +GAK + A+EA+ +L E K+
Sbjct: 174 SSYEPELFPGLIYRMVKPKVVLLIFVSGKIVLTGAKVREEIYQAFEAIYPVLSEFRKH 231
>sp|P48511|TF2D_MESCR TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|841440|gb|AAA80641.1| (U25275) TATA-binding protein
[Mesembryanthemum crystallinum]
Length = 200
Score = 118 bits (293), Expect = 4e-26
Identities = 74/177 (41%), Positives = 108/177 (60%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS + R A++I+KL G KFK IQN+V S D+ L+ +A +
Sbjct: 85 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAF 140
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEK 180
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 141 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVREETYTAFENIYPVLTEFRK 197
Score = 71.0 bits (171), Expect = 9e-12
Identities = 33/81 (40%), Positives = 54/81 (65%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R+++P+ L+F+SGK+VC+GA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 85 KSEQQSKLAARKYARIIQKLG 105
>sp|P93348|TF2D_TOBAC TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|1498162|dbj|BAA13156.1| (D86722) TATA binding
protein (TBP) [Nicotiana tabacum]
Length = 200
Score = 118 bits (293), Expect = 4e-26
Identities = 74/177 (41%), Positives = 108/177 (60%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS + R A++I+KL G KFK IQN+V S D+ L+ +A +
Sbjct: 85 KSEQSSKLAARKYARIIQKL-GFDAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAF 140
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEK 180
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 141 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
Score = 71.0 bits (171), Expect = 9e-12
Identities = 33/81 (40%), Positives = 54/81 (65%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R+++P+ L+F+SGK+VC+GA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 85 KSEQSSKLAARKYARIIQKLG 105
>gb|AAD10237.1| (AF015784) TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 118 bits (292), Expect = 6e-26
Identities = 74/177 (41%), Positives = 108/177 (60%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 25 LQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS + R A++I+KL G KFK IQN+V S D+ L+ +A +
Sbjct: 85 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAF 140
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEK 180
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 141 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
Score = 71.8 bits (173), Expect = 5e-12
Identities = 33/81 (40%), Positives = 54/81 (65%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R+++P+ L+F+SGK+VC+GA
Sbjct: 25 LQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 85 KSEQQSKLAARKYARIIQKLG 105
>gb|AAD10238.1| (AF015785) TATA-box binding protein [Phaseolus vulgaris]
Length = 200
Score = 118 bits (292), Expect = 6e-26
Identities = 74/177 (41%), Positives = 108/177 (60%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 25 LQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS + R A++I+KL G KFK IQN+V S D+ L+ +A +
Sbjct: 85 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYSHGAF 140
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEK 180
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 141 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRK 197
Score = 71.8 bits (173), Expect = 5e-12
Identities = 33/81 (40%), Positives = 54/81 (65%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R+++P+ L+F+SGK+VC+GA
Sbjct: 25 LQNIVSTVNLDCKLDLKTIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 85 KSEQQSKLAARKYARIIQKLG 105
>sp|P26357|TF2D_SOLTU TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) >gi|72901|pir||TWPO2D
transcription initiation factor IID - potato
>gi|21581|emb|CAA44360.1| (X62494) TATA-binding protein
[Solanum tuberosum]
Length = 200
Score = 117 bits (291), Expect = 8e-26
Identities = 74/177 (41%), Positives = 107/177 (59%), Gaps = 11/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V+L +LDL+ + N++YNP+ F +I R +PK LIF+SGK+V TGA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 71 KSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLPN- 126
KS + R A++I+KL G KFK IQN+V S D+ L+ +A
Sbjct: 85 KSEQQSKLAARKYARIIQKL-GFPAKFKD---FKIQNIVGSCDVKFPIRLEGLAYAHGAF 140
Query: 127 CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEAD---AWEAVRKLLRELEK 180
YEPE FPG+IYR+K P+ V+L+F SGKIV +GAK + A+E + +L E K
Sbjct: 141 SSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRK 197
Score = 71.0 bits (171), Expect = 9e-12
Identities = 33/81 (40%), Positives = 54/81 (65%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++ + +L +AL N EY P++F VI R+++P+ L+F+SGK+VC+GA
Sbjct: 25 LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 85 KSEQQSKLAARKYARIIQKLG 105
>sp|P52653|TF2D_ENTHI TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|3201503|emb|CAA88304.1| (Z48307) TATA box-binding
protein [Entamoeba histolytica]
Length = 234
Score = 114 bits (283), Expect = 7e-25
Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
Query: 5 NNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGK 64
N+ I N+V++ L +L+L K++ N++YNP+ F G I R PK LIF +GK
Sbjct: 50 NDTHPEIVNVVSTFQLGVKLELRKIVQKARNAEYNPKRFAGAIMRISSPKSTALIFQTGK 109
Query: 65 LVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN-VALT 123
+V TG +SI + + A K + +K IG + ++QN+V S D+ + L V
Sbjct: 110 IVCTGTRSIEESKIASKKYAKIIKKIGYPIHYSN-FNVQNIVGSCDVKFQIALRTLVDSY 168
Query: 124 LPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSE 164
L C+YEPE FPG++YR+ P+ +L+FS+GK+V +GAK E
Sbjct: 169 LAFCQYEPEVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDE 209
>pir||I60128 transcription factor IID - human
Length = 344
Score = 113 bits (280), Expect = 1e-24
Identities = 71/181 (39%), Positives = 107/181 (58%), Gaps = 13/181 (7%)
Query: 3 DTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSS 62
+++ + +++NIV++V+L +LDL+ + N++YNP+ F +I R +P+ LIFSS
Sbjct: 157 ESSGIVPQLQNIVSTVNLGCKLDLKTIALRRRNAEYNPKRFAAVIMRIREPRTTALIFSS 216
Query: 63 GKLVVTGAKSIHD---IERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN 119
GK+V TGAKS R A++++KL G KF IQNMV S D+ L+
Sbjct: 217 GKMVCTGAKSEEQSRLAARKYARVVQKL-GFPAKFLD---FKIQNMVGSCDVKFPIRLEG 272
Query: 120 VALTLPN-CEYEPEQFPGVIY-----RVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRK 173
+ LT YEPE FPG+IY R+ PR V+L+F SGK+V +GAK A+ +EA
Sbjct: 273 LVLTHQQFSSYEPELFPGLIYRMIKPRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFEN 332
Query: 174 L 174
+
Sbjct: 333 I 333
Score = 76.5 bits (185), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 165 LQNIVSTVNLGCKLDLKTIALRRRNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 224
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 225 KSEEQSRLAARKYARVVQKLG 245
>pir||S52407 TATA box-binding protein - Entamoeba histolytica
Length = 233
Score = 111 bits (274), Expect = 7e-24
Identities = 61/155 (39%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
I N+V+ L +L+L K++ N+ YNP+ F G I R PK LIF +GK+V TG
Sbjct: 55 IVNVVSRFQLGVKLELRKIVQKAINAIYNPKRFAGAIMRISSPKSTALIFQTGKIVCTGT 114
Query: 71 KSIHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDN-VALTLPNCEY 129
+SI + + A K + +K IG + ++QN+V S D+ + L V L C+Y
Sbjct: 115 RSIEESKIASKKYAKIIKKIGYPIHYSN-FNVQNIVGSCDVKFQIALRTLVDSDLAFCQY 173
Query: 130 EPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSE 164
EPE FPG++YR+ P+ +L+FS+GK+V +GAK E
Sbjct: 174 EPEVFPGLVYRMASPKVTLLVFSTGKVVLTGAKDE 208
>pir||S37740 transcription factor TRF - fruit fly (Drosophila melanogaster)
>gi|11136|emb|CAA50185.1| (X70837) TBP-related factor
[Drosophila melanogaster] >gi|11138|emb|CAA50186.1|
(X70838) TBP-related factor [Drosophila melanogaster]
>gi|7297339|gb|AAF52600.1| (AE003619) Trf gene product
[Drosophila melanogaster] >gi|445085|prf||1908393A
TATA-binding protein-related factor [Drosophila sp.]
Length = 224
Score = 110 bits (272), Expect = 1e-23
Identities = 67/180 (37%), Positives = 106/180 (58%), Gaps = 11/180 (6%)
Query: 8 KLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVV 67
++R++NIVA+ + +LDL+ + NS+Y+P+ F G+I R P+ LIF +GK++
Sbjct: 48 EIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVIMRMHSPRCTALIFRTGKVIC 107
Query: 68 TGAKSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVALTL 124
TGA++ + + R A++++KL G VKF L QN+V + D+ L+N+
Sbjct: 108 TGARNEIEADIGSRKFARILQKL-GFPVKFMEYKL---QNIVATVDLRFPIRLENLNHVH 163
Query: 125 PN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSE---ADAWEAVRKLLRELEK 180
YEPE FPG+IYR+ PR V+L+F +GK+V +GAKS D EA+ +L K
Sbjct: 164 GQFSSYEPEMFPGLIYRMVKPRIVLLIFVNGKVVFTGAKSRKDIMDCLEAISPILLSFRK 223
>sp|P26355|TF2D_DICDI TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP)
>gi|167899|gb|AAA33256.1| (M64861) TFIID [Dictyostelium
discoideum]
Length = 205
Score = 99.8 bits (245), Expect = 2e-20
Identities = 65/177 (36%), Positives = 98/177 (54%), Gaps = 12/177 (6%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
++NIV++V++ +L L+ + N++YNP+ F +I R +PK LIF SGK+V TGA
Sbjct: 27 LQNIVSTVNMATELYLKAIALGARNAEYNPKRFAAVIMRIREPKTTALIFKSGKMVCTGA 86
Query: 71 KS---IHDIERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLD---NVALTL 124
KS R A++I+KL R IQN+V S D+ L+ N +
Sbjct: 87 KSEDASRFAARKYARIIQKLDFPA----RFTDFKIQNIVGSCDVKFPIKLELLHNAHTSF 142
Query: 125 PNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLRELEKY 181
N YEPE FPG+IY++ P+ ++L+F SGKIV +GAK +EA + L +
Sbjct: 143 TN--YEPEIFPGLIYKMIQPKVLLLIFVSGKIVLTGAKVREYIYEAFENIYPVLSAF 197
>gi|10803647 tbpC [Halobacterium sp. NRC-1] >gi|7443543|pir||T08317 TATA-binding
transcription initiation factor homolog tbpC -
Halobacterium sp. (strain NRC-1) plasmid pNRC100
>gi|2822378|gb|AAC82884.1| (AF016485) tbpC
[Halobacterium sp. NRC-1] >gi|10584194|gb|AAG20813.1|
(AE005149) transcription initiation factor IID; TbpC
[Halobacterium sp. NRC-1]
Length = 181
Score = 90.5 bits (221), Expect = 1e-17
Identities = 57/178 (32%), Positives = 102/178 (57%), Gaps = 8/178 (4%)
Query: 9 LRIENIVASVDLFAQLDLEKV-LDIC-PNSKYNPEEFPGIICRFDDPKVALLIFSSGKLV 66
+ I NIV S DL +LD+E + D+ P S+Y+P + G+ R ++ + ++ SGK +
Sbjct: 3 VEIANIVGSGDLGVELDVEPLEADLSTPYSEYDPSNYHGLYVRLEENGPLITVYRSGKYI 62
Query: 67 VTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPL-IDIQNMVFSGDIGREFNLDNVA--LT 123
+TG S+ + + + L +GV + ++N+V + + +L+ +A L
Sbjct: 63 ITGCASMESLHETNEEFLGMLADLGVTEEDTQTGFTVENVVCTAMLDELVSLNALAIGLG 122
Query: 124 LPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAK---SEADAWEAVRKLLREL 178
L EYEPEQFPG++YR ++ AV+L+F++GK+V +GAK + A+E + ++EL
Sbjct: 123 LEVTEYEPEQFPGLVYRPEEIGAVLLVFANGKMVITGAKDTETAESAYEYFQSKVQEL 180
>sp|P32086|TF2D_PLAFA TRANSCRIPTION INITIATION FACTOR TFIID (TATA-BOX FACTOR) (TATA
SEQUENCE-BINDING PROTEIN) (TBP) >gi|484632|pir||JQ2124
transcription initiation factor IID - malaria parasite
(Plasmodium falciparum) >gi|160700|gb|AAA29769.1|
(L06060) TATA-binding protein [Plasmodium falciparum]
>gi|5911375|gb|AAD55768.1|AF177280_1 (AF177280)
TATA-binding protein [Plasmodium falciparum]
Length = 228
Score = 88.9 bits (217), Expect = 4e-17
Identities = 57/183 (31%), Positives = 99/183 (53%), Gaps = 10/183 (5%)
Query: 6 NVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKL 65
N+ L I NI++S +L ++L V N++YNP + +I R + P+ LIF +G++
Sbjct: 47 NISLNIHNIISSANLCIDINLRLVAVSIRNAEYNPSKINTLIIRLNKPQCTALIFKNGRI 106
Query: 66 VVTGAKSIHDIE---RAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVAL 122
++TG ++ D + +AK+I+ + VKF I+N++ S + L+ +A
Sbjct: 107 MLTGTRTKKDSIMGCKKIAKIIKIVTKDKVKFCN---FKIENIIASANCNIPIRLEVLAH 163
Query: 123 TLPN-CEYEPEQFPGVIYRVK---DPRAVILLFSSGKIVCSGAKSEADAWEAVRKLLREL 178
C YEPE F G++YR K + ++VIL+F SGKI+ +G KS + + + L
Sbjct: 164 DHKEYCNYEPELFAGLVYRYKPTSNLKSVILIFVSGKIIITGCKSVNKLYTVFQDIYNVL 223
Query: 179 EKY 181
+Y
Sbjct: 224 IQY 226
>gi|10803578 tbpA Similar to Pyrococcus woesei TATA-box binding proteins
gp:gi-498649; % similarity 51.5, % identity 36.6, length
191;putative TATA-box binding protein [Halobacterium sp.
NRC-1] >gi|7443537|pir||T08248 TATA-binding
transcription initiation factor homolog tbpA -
Halobacterium sp. (strain NRC-1) plasmid pNRC100
>gi|2822309|gb|AAC82815.1| (AF016485) tbpA Similar to
Pyrococcus woesei TATA-box binding proteins
gp:gi-498649; % similarity 51.5, % identity 36.6, length
191;putative TATA-box binding protein [Halobacterium sp.
NRC-1]
Length = 100
Score = 78.8 bits (191), Expect = 4e-14
Identities = 39/86 (45%), Positives = 55/86 (63%)
Query: 100 IDIQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCS 159
I I+N+V S I +E +L VA+ L +Y+PEQFPG++YR+ +P V LLF SGK+V +
Sbjct: 8 ITIENVVASTAIEQELDLSRVAMDLEGADYDPEQFPGLVYRLDEPSVVALLFGSGKLVIT 67
Query: 160 GAKSEADAWEAVRKLLRELEKYGLIE 185
G K DA AV + LE GL++
Sbjct: 68 GGKHPVDAEHAVDTIDSRLEDLGLLD 93
Score = 75.7 bits (183), Expect = 4e-13
Identities = 36/84 (42%), Positives = 54/84 (63%)
Query: 9 LRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVT 68
+ IEN+VAS + +LDL +V + Y+PE+FPG++ R D+P V L+F SGKLV+T
Sbjct: 8 ITIENVVASTAIEQELDLSRVAMDLEGADYDPEQFPGLVYRLDEPSVVALLFGSGKLVIT 67
Query: 69 GAKSIHDIERAVAKLIEKLKGIGV 92
G K D E AV + +L+ +G+
Sbjct: 68 GGKHPVDAEHAVDTIDSRLEDLGL 91
>gb|AAF71245.1| (AF221563) TA-TA binding protein 1 [Gallus gallus]
>gi|7960168|gb|AAF71246.1| (AF221564) TA-TA binding
protein 1 [Gallus gallus]
Length = 210
Score = 76.9 bits (186), Expect = 2e-13
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 102 IQNMVFSGDIGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGA 161
+QN+V + ++G + +L +AL N EY P++F VI R+++PR L+FSSGK+VC+GA
Sbjct: 116 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 175
Query: 162 KSEADAWEAVRKLLRELEKYG 182
KSE + A RK R ++K G
Sbjct: 176 KSEEQSRLAARKYARVVQKLG 196
>gb|AAF79169.1| (AF249992) TATA-box binding protein 2 [Habrotrocha constricta]
Length = 108
Score = 74.1 bits (179), Expect = 1e-12
Identities = 33/72 (45%), Positives = 49/72 (67%)
Query: 111 IGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEA 170
+G + +L +AL N EY P++F VI R++ PR L+FSSGK+VC+GAKSE D+ +A
Sbjct: 1 LGCQLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSIQA 60
Query: 171 VRKLLRELEKYG 182
R+ R ++K G
Sbjct: 61 ARRYARVIQKLG 72
Score = 70.6 bits (170), Expect = 1e-11
Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
Query: 20 LFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGAKSIHD---I 76
L QLDL+++ N++YNP+ F +I R P+ LIFSSGK+V TGAKS D
Sbjct: 1 LGCQLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSIQA 60
Query: 77 ERAVAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNLDNVAL 122
R A++I+KL G KF IQNMV S D+ + L+ +AL
Sbjct: 61 ARRYARVIQKL-GFPAKFLD---FKIQNMVGSADVSFKIQLEALAL 102
>gb|AAF79168.1| (AF249991) TATA-box binding protein 1 [Habrotrocha constricta]
Length = 108
Score = 72.2 bits (174), Expect = 4e-12
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 111 IGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEA 170
+G +L +AL N EY P++F VI R+++PR L+F SGK+VC+GAKSE D+ +A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRNPRTTALIFGSGKMVCTGAKSEEDSLQA 60
Query: 171 VRKLLRELEKYG 182
R+ R ++K G
Sbjct: 61 ARRYARVIQKLG 72
>gb|AAF79165.1|AF249988_1 (AF249988) TATA-box binding protein 1 [Philodina roseola]
Length = 108
Score = 71.4 bits (172), Expect = 7e-12
Identities = 32/72 (44%), Positives = 47/72 (64%)
Query: 111 IGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEA 170
+G +L +AL N EY P++F VI R++ PR L+F SGK+VC+GAKSE D+ +A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 171 VRKLLRELEKYG 182
R+ R ++K G
Sbjct: 61 ARRYARVIQKLG 72
>gb|AAF79170.1| (AF249993) TATA-box binding protein [Brachionus plicatilis]
Length = 109
Score = 71.4 bits (172), Expect = 7e-12
Identities = 34/72 (47%), Positives = 46/72 (63%)
Query: 111 IGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEA 170
+G L +AL N EY P++F VI R++ PR L+FSSGK+VC+GAKSE D+ A
Sbjct: 1 LGCNLELKKIALYARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKMVCTGAKSEEDSRLA 60
Query: 171 VRKLLRELEKYG 182
RK R ++K G
Sbjct: 61 ARKYARIIQKLG 72
>emb|CAB41469.1| (AJ238443) TBP-like factor [Caenorhabditis elegans]
Length = 454
Score = 71.0 bits (171), Expect = 9e-12
Identities = 48/179 (26%), Positives = 91/179 (50%), Gaps = 7/179 (3%)
Query: 1 MVDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFD-DPKVALLI 59
M D ++ ++I N+V + L +DL K+ N Y E+ G++ + P + +
Sbjct: 257 MPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREK--GVMMKQKRSPGCYIKV 314
Query: 60 FSSGKLVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLID---IQNMVFSGDIGREFN 116
+SSGK+ + G +S D +RA + ++ + K K I + N++ + +
Sbjct: 315 YSSGKVYIVGCRSEADCKRAARSIARHVQRVMGKTKERVSIRNYRVNNVLATCRLPFGIK 374
Query: 117 LDNVALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
++ VA P+ YEPE G+++R P+A + + ++G I +GA+SEAD E + K+
Sbjct: 375 IEEVAAKYPSESTYEPELSVGLVWRSVTPKATLRIHTTGSITVTGAQSEADVLEVLSKI 433
>gb|AAF59926.1| (AF228692) TBP-like factor [Caenorhabditis elegans]
Length = 505
Score = 71.0 bits (171), Expect = 9e-12
Identities = 48/179 (26%), Positives = 91/179 (50%), Gaps = 7/179 (3%)
Query: 1 MVDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFD-DPKVALLI 59
M D ++ ++I N+V + L +DL K+ N Y E+ G++ + P + +
Sbjct: 257 MPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREK--GVMMKQKRSPGCYIKV 314
Query: 60 FSSGKLVVTGAKSIHDIERAVAKLIEKLKGIGVKFKRAPLID---IQNMVFSGDIGREFN 116
+SSGK+ + G +S D +RA + ++ + K K I + N++ + +
Sbjct: 315 YSSGKVYIVGCRSEADCKRAARSIARHVQRVMGKTKERVSIRNYRVNNVLATCRLPFGIK 374
Query: 117 LDNVALTLPN-CEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAVRKL 174
++ VA P+ YEPE G+++R P+A + + ++G I +GA+SEAD E + K+
Sbjct: 375 IEEVAAKYPSESTYEPELSVGLVWRSVTPKATLRIHTTGSITVTGAQSEADVLEVLSKI 433
>emb|CAB41467.1| (AJ238444) TBP-like factor [Brugia malayi]
Length = 295
Score = 70.6 bits (170), Expect = 1e-11
Identities = 48/175 (27%), Positives = 93/175 (52%), Gaps = 7/175 (4%)
Query: 2 VDTNNVKLRIENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFD-DPKVALLIF 60
+D + +I N+V + L +DL +V N ++ G++ + +P + I+
Sbjct: 42 IDIQCFEFQIRNVVCNYTLPLHIDLHRVALNSGNVAFDRGR--GVLLKQKRNPSCYVKIY 99
Query: 61 SSGKLVVTGAKSIHDIERA---VAKLIEKLKGIGVKFKRAPLIDIQNMVFSGDIGREFNL 117
SSGK+ + G +S + +RA VA++++K G + R + N++ + + +
Sbjct: 100 SSGKIYIVGCRSESECKRAARGVARMVQKTMGKMMDVVRIRNYRVCNVLATCKMPFGVKI 159
Query: 118 DNVALTLPNC-EYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEAV 171
+ +A P+C +YEPE G+I+R +PRA + + ++G I +GA SE+D +AV
Sbjct: 160 EELAQKYPDCSQYEPELSVGLIWRSTNPRATLRIHTTGSITVTGAASESDVMKAV 214
>gb|AAF79166.1| (AF249989) TATA-box binding protein 2 [Macrotrachela
quadricornifera] >gi|8777981|gb|AAF79167.1| (AF249990)
TATA-box binding protein 2 [Philodina roseola]
Length = 108
Score = 68.7 bits (165), Expect = 5e-11
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 111 IGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEA 170
+G +L +AL N EY P++F VI R++ PR L+F SGK+VC+GAKSE + +A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMRIRSPRTTALIFGSGKMVCTGAKSENXSLQA 60
Query: 171 VRKLLRELEKYG 182
R+ R ++K G
Sbjct: 61 ARRYARVIQKLG 72
>gb|AAF79164.1|AF249987_1 (AF249987) TATA-box binding protein 1 [Macrotrachela
quadricornifera]
Length = 108
Score = 68.3 bits (164), Expect = 6e-11
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 111 IGREFNLDNVALTLPNCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSGAKSEADAWEA 170
+G +L +AL N EY P++F VI ++ PR L+F SGK+VC+GAKSE D+ +A
Sbjct: 1 LGCPLDLKRIALQARNAEYNPKRFAAVIMCIRSPRTTALIFGSGKMVCTGAKSENDSLQA 60
Query: 171 VRKLLRELEKYG 182
R+ R ++K G
Sbjct: 61 ARRYARVIQKLG 72
>emb|CAB41487.1| (AJ238441) TBP-like factor [Xenopus laevis]
Length = 186
Score = 67.9 bits (163), Expect = 8e-11
Identities = 53/177 (29%), Positives = 82/177 (45%), Gaps = 13/177 (7%)
Query: 11 IENIVASVDLFAQLDLEKVLDICPNSKYNPEEFPGIICRFDDPKVALLIFSSGKLVVTGA 70
I N+V L+L K+ N Y E ++ + P++ I+SSGK++ TGA
Sbjct: 13 ITNVVCVFRTRCHLNLRKIALEGLNVIYK-REVSKVLMKLRKPRITATIWSSGKIICTGA 71
Query: 71 KSIHDIERAVAKLIEKLKGIG-----VKFKRAPLIDIQNMVFSGDIGREFNLDNVALTLP 125
S + + +L L+ +G +FK ++ + M F + EF N P
Sbjct: 72 TSEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVLAVCTMPFEIRLN-EFTKQN----RP 126
Query: 126 NCEYEPEQFPGVIYRVKDPRAVILLFSSGKIVCSG--AKSEADAWEAVRKLLRELEK 180
+ YEPE P V YR+K RA + +FS+G I +G KS A A E + + E K
Sbjct: 127 HASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPDVKSVASAIEQIYPFVFESRK 183
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.141 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71989812
Number of Sequences: 2977
Number of extensions: 2910897
Number of successful extensions: 6898
Number of sequences better than 1.0e-10: 92
Number of HSP's better than 0.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6562
Number of HSP's gapped (non-prelim): 216
length of query: 191
length of database: 189,106,746
effective HSP length: 54
effective length of query: 137
effective length of database: 156,788,448
effective search space: 21480017376
effective search space used: 21480017376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)