BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1727 (PAB1727) DE:Hypothetical protein
         (193 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75072 hypothetical protein PAB1727 - Pyrococcus abyssi (st...   388  e-107
pir||F75082 hypothetical protein PAB1671 - Pyrococcus abyssi (st...    82  3e-15
pir||G75139 hypothetical protein PAB1750 - Pyrococcus abyssi (st...    71  1e-11

>pir||C75072 hypothetical protein PAB1727 - Pyrococcus abyssi (strain Orsay)
           >gi|5458392|emb|CAB49880.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 193
           
 Score =  388 bits (985), Expect = e-107
 Identities = 193/193 (100%), Positives = 193/193 (100%)

Query: 1   MSKALELFMERASIHEDIVNAIKELSSKSLKEILSYALSGELDSTKVYEFLYENLPDGYP 60
           MSKALELFMERASIHEDIVNAIKELSSKSLKEILSYALSGELDSTKVYEFLYENLPDGYP
Sbjct: 1   MSKALELFMERASIHEDIVNAIKELSSKSLKEILSYALSGELDSTKVYEFLYENLPDGYP 60

Query: 61  REKFKEFIEMERDHDRKVEKIFRALFPGEEPVEVKLKTWSKAVLEKDFRLRTVKDYLKAP 120
           REKFKEFIEMERDHDRKVEKIFRALFPGEEPVEVKLKTWSKAVLEKDFRLRTVKDYLKAP
Sbjct: 61  REKFKEFIEMERDHDRKVEKIFRALFPGEEPVEVKLKTWSKAVLEKDFRLRTVKDYLKAP 120

Query: 121 EIAMDLEKLSEGVYTMLYDILRNPEHKRIMKKLAEDERYHYNFLRKEYDFYSQIEAEKAL 180
           EIAMDLEKLSEGVYTMLYDILRNPEHKRIMKKLAEDERYHYNFLRKEYDFYSQIEAEKAL
Sbjct: 121 EIAMDLEKLSEGVYTMLYDILRNPEHKRIMKKLAEDERYHYNFLRKEYDFYSQIEAEKAL 180

Query: 181 KELIRELKGNKGG 193
           KELIRELKGNKGG
Sbjct: 181 KELIRELKGNKGG 193


>pir||F75082 hypothetical protein PAB1671 - Pyrococcus abyssi (strain Orsay)
           >gi|5458475|emb|CAB49963.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 320
           
 Score = 82.3 bits (200), Expect = 3e-15
 Identities = 58/177 (32%), Positives = 87/177 (48%), Gaps = 5/177 (2%)

Query: 6   ELFMERASIHEDIVNAIKELSSKSLKEILSYALSGELDSTKVYEFLYENLPDGYPREKFK 65
           EL +E     E IV  +K+LS K   EILSYA+  E    + Y  L +       R  F 
Sbjct: 3   ELKLEAREYMEKIVKKLKDLSPK---EILSYAIFNEEAEIRYYRELAKRSERESVRVLFL 59

Query: 66  EFIEMERDHDRKVEKIFRALFPGEEPVEVKLKTWSKAVLEKDFRLRTVKDYLKAPEIAMD 125
           +  +  ++H  ++ K+F+ L+P EEPVEV       A     F   TV DYL+A E  M+
Sbjct: 60  QMADESQEHHDRLYKLFKELYPNEEPVEVDAPPVEVAPFYPKF--ETVDDYLEALEYCME 117

Query: 126 LEKLSEGVYTMLYDILRNPEHKRIMKKLAEDERYHYNFLRKEYDFYSQIEAEKALKE 182
            E  ++  Y +L     N + + +  +LAE E  HY  L+K Y+  +  + +K L E
Sbjct: 118 SELFAKETYEVLALKATNEDARVLFAQLAEMENDHYLRLKKLYNLLTSFKQKKILPE 174


>pir||G75139 hypothetical protein PAB1750 - Pyrococcus abyssi (strain Orsay)
           >gi|5458343|emb|CAB49832.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 175
           
 Score = 70.6 bits (170), Expect = 1e-11
 Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 4/151 (2%)

Query: 19  VNAIKELSSKSLKEILSYALSGELDSTKVYEFLYENLPDGYPREKFKEFIEMERDHDRKV 78
           ++ IKEL    L+E+L  A+  E+++ K YE   E +     + K       E  H++ +
Sbjct: 13  LDKIKELP---LEELLGMAIKSEIEARKFYESFAEKIDIEPLKGKILWLASEEEKHEKML 69

Query: 79  EKIFRALFPGEEPVEVKLKTWSKAVLEKDFRLRTVKDYLKAPEIAMDLEKLSEGVYTMLY 138
            K++ ++FPG+E V  K +     +      L+  +D +     AM  E+++   Y  L 
Sbjct: 70  RKLYSSMFPGKEVVFPK-EHIGPELQPVAKELKGSQDVIDLIHWAMKAEEIAAQFYEKLM 128

Query: 139 DILRNPEHKRIMKKLAEDERYHYNFLRKEYD 169
           DI+   E KR+MK L++ ER HY  LR EY+
Sbjct: 129 DIVEGEEKKRLMKSLSDMERGHYYMLRAEYE 159


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.136    0.375 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69557045
Number of Sequences: 2977
Number of extensions: 2921217
Number of successful extensions: 10314
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10309
Number of HSP's gapped (non-prelim): 4
length of query: 193
length of database: 189,106,746
effective HSP length: 58
effective length of query: 135
effective length of database: 154,394,500
effective search space: 20843257500
effective search space used: 20843257500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)