BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1730 (PAB1730) DE:Hypothetical protein
(279 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75071 hypothetical protein PAB1730 - Pyrococcus abyssi (st... 539 e-152
pir||B71094 hypothetical protein PH1015 - Pyrococcus horikoshii ... 409 e-113
sp|Q58408|YA02_METJA HYPOTHETICAL PROTEIN MJ1002 >gi|2128625|pir... 167 2e-40
gb|AAG19714.1| (AE005057) Vng1389c [Halobacterium sp. NRC-1] 137 1e-31
gi|11499348 conserved hypothetical protein [Archaeoglobus fulgid... 125 7e-28
>pir||F75071 hypothetical protein PAB1730 - Pyrococcus abyssi (strain Orsay)
>gi|5458387|emb|CAB49875.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 279
Score = 539 bits (1373), Expect = e-152
Identities = 279/279 (100%), Positives = 279/279 (100%)
Query: 1 MVDTLDVFEALLSTAERLAKEINAKALVLVYPPAEDLEINFSGDIIIISRESEVSSKKEK 60
MVDTLDVFEALLSTAERLAKEINAKALVLVYPPAEDLEINFSGDIIIISRESEVSSKKEK
Sbjct: 1 MVDTLDVFEALLSTAERLAKEINAKALVLVYPPAEDLEINFSGDIIIISRESEVSSKKEK 60
Query: 61 KNNVKNLSFPVSIGLQNLLNLISAFLKSRGIADKNEFFVYVTNESVGVKRIEEKSSISDE 120
KNNVKNLSFPVSIGLQNLLNLISAFLKSRGIADKNEFFVYVTNESVGVKRIEEKSSISDE
Sbjct: 61 KNNVKNLSFPVSIGLQNLLNLISAFLKSRGIADKNEFFVYVTNESVGVKRIEEKSSISDE 120
Query: 121 FFEKFEKYSNVISRVLEIAIELSIEGREGMPVGTIFVIGDTKEVMKHSHQLVPNPFKGHN 180
FFEKFEKYSNVISRVLEIAIELSIEGREGMPVGTIFVIGDTKEVMKHSHQLVPNPFKGHN
Sbjct: 121 FFEKFEKYSNVISRVLEIAIELSIEGREGMPVGTIFVIGDTKEVMKHSHQLVPNPFKGHN 180
Query: 181 LNILDPKVKNVIKEFSFLDGAFIVSSKGRIIAAGRYLDVDPKSLDVSLPQGLGSRHLASA 240
LNILDPKVKNVIKEFSFLDGAFIVSSKGRIIAAGRYLDVDPKSLDVSLPQGLGSRHLASA
Sbjct: 181 LNILDPKVKNVIKEFSFLDGAFIVSSKGRIIAAGRYLDVDPKSLDVSLPQGLGSRHLASA 240
Query: 241 AITKVTKAVAITLSESGTVRIFKNGRIVFEYNPRLAINL 279
AITKVTKAVAITLSESGTVRIFKNGRIVFEYNPRLAINL
Sbjct: 241 AITKVTKAVAITLSESGTVRIFKNGRIVFEYNPRLAINL 279
>pir||B71094 hypothetical protein PH1015 - Pyrococcus horikoshii
>gi|3257429|dbj|BAA30112.1| (AP000004) 272aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 272
Score = 409 bits (1039), Expect = e-113
Identities = 201/276 (72%), Positives = 245/276 (87%), Gaps = 8/276 (2%)
Query: 1 MVDTLDVFEALLSTAERLAKEINAKALVLVYPPAEDLEINFSGDIIIISRESEVSSKKEK 60
MV L++FE LL A+ +A+EINA+ +VLVYP ED+ + FSG+I+I+ RE +VS
Sbjct: 1 MVLKLEIFEILLIKAKEIAEEINARVIVLVYPSREDVNLEFSGEIVIVGREFDVS----- 55
Query: 61 KNNVKNLSFPVSIGLQNLLNLISAFLKSRGIADKNEFFVYVTNESVGVKRIEEKSSISDE 120
+ N+K L FPVSIGL NLL+L+SAFLKSRGI + EFFVYVT +S+G++++EEK+ I++E
Sbjct: 56 RENIKKLPFPVSIGLPNLLSLVSAFLKSRGIIKEGEFFVYVTKDSIGIRKVEEKTMIANE 115
Query: 121 FFEKFEKYSNVISRVLEIAIELSIEGREGMPVGTIFVIGDTKEVMKHSHQLVPNPFKGHN 180
FFE++E +I+RVLEIAIELSIEGREG+PVGTIFVIGDTKEVMKHSHQL+PNPFKGH+
Sbjct: 116 FFERYE---GIINRVLEIAIELSIEGREGVPVGTIFVIGDTKEVMKHSHQLIPNPFKGHH 172
Query: 181 LNILDPKVKNVIKEFSFLDGAFIVSSKGRIIAAGRYLDVDPKSLDVSLPQGLGSRHLASA 240
LNILDPKVKN+IKEFSFLDGAFI+SSKGRIIAAGRYLDVDPKSLDV+LPQGLGSRHLASA
Sbjct: 173 LNILDPKVKNIIKEFSFLDGAFIISSKGRIIAAGRYLDVDPKSLDVTLPQGLGSRHLASA 232
Query: 241 AITKVTKAVAITLSESGTVRIFKNGRIVFEYNPRLA 276
AITK+TKA+A+TLSESGTVRIFK+G+IVFE+NPRL+
Sbjct: 233 AITKITKAIAVTLSESGTVRIFKDGQIVFEHNPRLS 268
>sp|Q58408|YA02_METJA HYPOTHETICAL PROTEIN MJ1002 >gi|2128625|pir||A64425 hypothetical
protein MJ1002 - Methanococcus jannaschii
>gi|1591662|gb|AAB99005.1| (U67542) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 309
Score = 167 bits (418), Expect = 2e-40
Identities = 100/249 (40%), Positives = 158/249 (63%), Gaps = 21/249 (8%)
Query: 46 IIISRESEVSSKKEKKNNVKNLSFPVSIGLQ--NLLNLISA----FLKSRGIADKNEFFV 99
II++ ++V+ KK N +N+ +P+ I + N +IS+ LK + + + N+
Sbjct: 61 IIVATPNQVTYKKISSENEENI-YPIFIKHREDNRCMIISSGIVHALKMKILKENNKIVA 119
Query: 100 YVTN-------ESVGVKRIEE--KSSISDEFFEKF-EKYSNVISRVLEIAIELSIEGREG 149
V +++ V ++E K+ E FE EK + ++++A+E+ EGREG
Sbjct: 120 VVGEPKTPGKLDTIMVVNVKEHVKTITLYELFETLDEKQKRTLKEIIKLAMEIGREGREG 179
Query: 150 MPVGTIFVIGDTKEVMKHSHQLVPNPFKGHNLNILDPKVKNVIKEFSFLDGAFIVSSKGR 209
VGTIFV+GDT VM S L+ NPF GHN +I D VK IKE S +DGAFI++ +G+
Sbjct: 180 EYVGTIFVMGDTLNVMSMSKPLILNPFAGHNASIFDENVKGTIKELSSIDGAFIITDEGK 239
Query: 210 IIAAGRYLDVDPKSLDVSLPQGLGSRHLASAAITKVTKAVAITLSES-GTVRIFKNGRIV 268
+++AGR+L++ DV++P+GLG+RHLA+A+I+K T A+A+T+S+S G VR+FK+G+IV
Sbjct: 240 VVSAGRFLEIKG---DVNIPKGLGARHLAAASISKNTNAIAVTVSQSGGIVRVFKDGKIV 296
Query: 269 FEYNPRLAI 277
FE +PR I
Sbjct: 297 FETDPRANI 305
>gb|AAG19714.1| (AE005057) Vng1389c [Halobacterium sp. NRC-1]
Length = 270
Score = 137 bits (342), Expect = 1e-31
Identities = 72/155 (46%), Positives = 104/155 (66%), Gaps = 3/155 (1%)
Query: 120 EFFEKFEKYSNVISRVLEIAIELSIEGREGMPVGTIFVIGDTKEVMKHSHQLVPNPFKGH 179
E F VI V ++AIEL +G++G PVG +FV+GD +VM S L NPF+
Sbjct: 115 ELFASTRAEPGVIRDVFDVAIELGRKGQKGKPVGALFVVGDAGKVMTKSRPLSYNPFEKS 174
Query: 180 NLNILDPKVKNVIKEFSFLDGAFIVSSKGRIIAAGRYLDVDPKSLDVSLPQGLGSRHLAS 239
++++ DP V ++KEFS LDGAF++S G+I+++ RYL+ + D+ P+GLG+RH+A+
Sbjct: 175 HVHVGDPIVNVMLKEFSRLDGAFVISDSGKIVSSYRYLEPGAEGTDI--PKGLGARHMAA 232
Query: 240 AAITKVTKAVAITLSES-GTVRIFKNGRIVFEYNP 273
AIT+ T AVAI LSES G VR F+NG +V E +P
Sbjct: 233 GAITRDTNAVAIVLSESDGLVRAFRNGELVLELDP 267
>gi|11499348 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483165|pir||F69469 conserved hypothetical protein
AF1759 - Archaeoglobus fulgidus
>gi|2648790|gb|AAB89490.1| (AE000981) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 334
Score = 125 bits (310), Expect = 7e-28
Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 6/190 (3%)
Query: 82 ISAFLKSRGIADKNEFFVYVTNESVGVKRIE-EKSSISDEFFEKFEK-YSNVISRVLEIA 139
ISA + +G V+ T+ G+ E EKSS E E+ + VL +A
Sbjct: 134 ISAQMYLKGFEFGRAVVVFDTDTLKGLTIFEPEKSSFLKAVEECVERVHPEAFRAVLTVA 193
Query: 140 IELSIEGREGMPVGTIFVIGDTKEVMKHSHQLVPNPFKGH---NLNILDPKVKNVIKEFS 196
+ ++ +GREG +GT FV+GD +EVM S QLV NP+ GH + +I +P+ + EF+
Sbjct: 194 LNIAQKGREGRKIGTAFVMGDVEEVMSRSSQLVINPYHGHKEADRDIKNPENWESVMEFA 253
Query: 197 FLDGAFIVSSKGRIIAAGRYLDVDPKSLDVSLPQGLGSRHLASAAITKVTKAVAITLSES 256
+DG F++ G IIA GRY++ K L + +GLG RH+A A+ITK TKA+A+ +SES
Sbjct: 254 QIDGVFVLDENGIIIACGRYIEASAKDLVSKIKRGLGGRHIACASITKETKAIAVVVSES 313
Query: 257 -GTVRIFKNG 265
G + ++K+G
Sbjct: 314 GGDITVYKDG 323
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.136 0.365
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92514700
Number of Sequences: 2977
Number of extensions: 3744015
Number of successful extensions: 10957
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10946
Number of HSP's gapped (non-prelim): 5
length of query: 279
length of database: 189,106,746
effective HSP length: 61
effective length of query: 218
effective length of database: 152,599,039
effective search space: 33266590502
effective search space used: 33266590502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)