BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1736 (PAB1736) DE:Hypothetical protein
(285 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75070 hypothetical protein PAB1736 - Pyrococcus abyssi (st... 580 e-165
pir||G71095 hypothetical protein PH1028 - Pyrococcus horikoshii ... 439 e-122
pir||H64453 hypothetical protein MJ1233 - Methanococcus jannasch... 353 2e-96
pir||D72693 hypothetical protein APE0964 - Aeropyrum pernix (str... 173 2e-42
pir||F82758 conserved hypothetical protein XF0811 [imported] - X... 136 4e-31
>pir||C75070 hypothetical protein PAB1736 - Pyrococcus abyssi (strain Orsay)
>gi|5458376|emb|CAB49864.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 285
Score = 580 bits (1479), Expect = e-165
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MQGVYFLTFREAREILRARKIAKINPNLNKTAELIEVEVIDNYAVFPDGSRIKLELIRKI 60
MQGVYFLTFREAREILRARKIAKINPNLNKTAELIEVEVIDNYAVFPDGSRIKLELIRKI
Sbjct: 1 MQGVYFLTFREAREILRARKIAKINPNLNKTAELIEVEVIDNYAVFPDGSRIKLELIRKI 60
Query: 61 AEDEGTVYFFKDGELYKAAIAGEHFYKLVPTIPPTIEIDGIRMHRTKDTDPLRDTLAKVE 120
AEDEGTVYFFKDGELYKAAIAGEHFYKLVPTIPPTIEIDGIRMHRTKDTDPLRDTLAKVE
Sbjct: 61 AEDEGTVYFFKDGELYKAAIAGEHFYKLVPTIPPTIEIDGIRMHRTKDTDPLRDTLAKVE 120
Query: 121 TVKPRRGENVLDTCMGLGYTAIESARRGAFVLTIEKDKNVIELAKINPWSRELFEWPNIK 180
TVKPRRGENVLDTCMGLGYTAIESARRGAFVLTIEKDKNVIELAKINPWSRELFEWPNIK
Sbjct: 121 TVKPRRGENVLDTCMGLGYTAIESARRGAFVLTIEKDKNVIELAKINPWSRELFEWPNIK 180
Query: 181 VIHGDSYELVKNFDNESFDVIIHDPPRFSLAGELYSREFYEELYRILKPGGRLFHYVGNP 240
VIHGDSYELVKNFDNESFDVIIHDPPRFSLAGELYSREFYEELYRILKPGGRLFHYVGNP
Sbjct: 181 VIHGDSYELVKNFDNESFDVIIHDPPRFSLAGELYSREFYEELYRILKPGGRLFHYVGNP 240
Query: 241 GKKYRRKDMQRGVMERLRSVGFIKVKKVEEALGVFALKPNHVNRA 285
GKKYRRKDMQRGVMERLRSVGFIKVKKVEEALGVFALKPNHVNRA
Sbjct: 241 GKKYRRKDMQRGVMERLRSVGFIKVKKVEEALGVFALKPNHVNRA 285
>pir||G71095 hypothetical protein PH1028 - Pyrococcus horikoshii
>gi|3257442|dbj|BAA30125.1| (AP000004) 281aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 281
Score = 439 bits (1116), Expect = e-122
Identities = 207/277 (74%), Positives = 246/277 (88%)
Query: 4 VYFLTFREAREILRARKIAKINPNLNKTAELIEVEVIDNYAVFPDGSRIKLELIRKIAED 63
+YF+TFREAR +L++R +A IN +L KT + I V V +Y FPDGSR+K E+I++IAED
Sbjct: 3 LYFITFREARVLLKSRDLALINVDLMKTGKKIRVRVSKDYVEFPDGSRVKKEIIKRIAED 62
Query: 64 EGTVYFFKDGELYKAAIAGEHFYKLVPTIPPTIEIDGIRMHRTKDTDPLRDTLAKVETVK 123
EG VYF +DGE++KAAIAGEHFYKLVPTIPPTIEI+GIRMHRTK TDPL+DT+AKV TVK
Sbjct: 63 EGNVYFVRDGEVFKAAIAGEHFYKLVPTIPPTIEINGIRMHRTKGTDPLKDTIAKVNTVK 122
Query: 124 PRRGENVLDTCMGLGYTAIESARRGAFVLTIEKDKNVIELAKINPWSRELFEWPNIKVIH 183
PR GE VLDTCMGLGYTAIESA+RGA V+TIEKD NVIELAKINPWSRELFE P IK++
Sbjct: 123 PREGEVVLDTCMGLGYTAIESAKRGARVITIEKDPNVIELAKINPWSRELFESPKIKILQ 182
Query: 184 GDSYELVKNFDNESFDVIIHDPPRFSLAGELYSREFYEELYRILKPGGRLFHYVGNPGKK 243
GDS++L+K F++ESFDVIIHDPPRFSLAGELYS EFY E++R+LKPGGRLFHYVGNPGK+
Sbjct: 183 GDSFDLIKKFEDESFDVIIHDPPRFSLAGELYSEEFYMEMFRVLKPGGRLFHYVGNPGKR 242
Query: 244 YRRKDMQRGVMERLRSVGFIKVKKVEEALGVFALKPN 280
YR D+Q+GVMERLR VGF+KV++V+EALGVFALKP+
Sbjct: 243 YRGLDLQKGVMERLRRVGFMKVRRVQEALGVFALKPS 279
>pir||H64453 hypothetical protein MJ1233 - Methanococcus jannaschii
>gi|1591865|gb|AAB99243.1| (U67564) M. jannaschii
predicted coding region MJ1233 [Methanococcus
jannaschii]
Length = 288
Score = 353 bits (895), Expect = 2e-96
Identities = 173/277 (62%), Positives = 224/277 (80%), Gaps = 5/277 (1%)
Query: 6 FLTFREAREILRAR-KIAKINPNLNKTA--ELIEVEVIDNYAVFPDGSRIKLELIRKIAE 62
++T + A+EIL ++ + +N +LNKT E I ++ A FP+G + ++++KIA+
Sbjct: 12 YITSKIAKEILNSQSEEIFLNLDLNKTEKKEKILIDREKKIAKFPEGD-VSFDILKKIAK 70
Query: 63 DEGTVYFFKDGELYKAAIAGEHFYKLVPTIPPTIEIDGIRMHRTKDTDPLRDTLAKVETV 122
DEG +YF KDGE++KAAI+ +YKLVPTIPPTIEI+GIRMHRTK+ +P DTL K+ V
Sbjct: 71 DEGHIYFIKDGEVFKAAISNNGYYKLVPTIPPTIEINGIRMHRTKEVNPYEDTLNKINAV 130
Query: 123 KPRRGENVLDTCMGLGYTAIESARRGAFVLTIEKDKNVIELAKINPWSRELFEWPNIKVI 182
K ++GE VLDTCMGLGYTAIE+ RRGA V+TIEK+ NV+ELAKINP+S ELF+ IK+I
Sbjct: 131 KVKKGEKVLDTCMGLGYTAIEAYRRGAEVITIEKNPNVLELAKINPYSEELFK-GGIKII 189
Query: 183 HGDSYELVKNFDNESFDVIIHDPPRFSLAGELYSREFYEELYRILKPGGRLFHYVGNPGK 242
GD+Y+++K F +E FDV+IHDPPRFSLAG LYS EFY+E++R+LKPGGRLFHYVGNPGK
Sbjct: 190 LGDAYDVIKRFKDEEFDVVIHDPPRFSLAGHLYSEEFYKEIFRVLKPGGRLFHYVGNPGK 249
Query: 243 KYRRKDMQRGVMERLRSVGFIKVKKVEEALGVFALKP 279
KYR KD+Q+GVMERLR VGF+ VK+VEEALGV A+KP
Sbjct: 250 KYRGKDLQKGVMERLRKVGFVNVKRVEEALGVVAVKP 286
>pir||D72693 hypothetical protein APE0964 - Aeropyrum pernix (strain K1)
>gi|5104633|dbj|BAA79948.1| (AP000060) 311aa long
hypothetical protein [Aeropyrum pernix]
Length = 311
Score = 173 bits (434), Expect = 2e-42
Identities = 101/219 (46%), Positives = 135/219 (61%), Gaps = 13/219 (5%)
Query: 65 GTVYFFKDGELYKAAIAGEHFYKLVPTI---PPTIEIDGIRMHRTKDTDPLRDTLAKVET 121
G+ F E Y+ + +YKLVP PPT+EI+GI MHR TDP D LAK
Sbjct: 100 GSTGFMGVAEAYRGS-----YYKLVPLPGGKPPTLEINGIHMHRVAGTDPWSDALAKASL 154
Query: 122 VKPRRGENVLDTCMGLGYTAIESARRGA-FVLTIEKDKNVIELAKINPWSRELFEWPNIK 180
V +RG VLDTC GLGYT+I + RGA V T+E D+ V++LA +NPWS L + I+
Sbjct: 155 VV-KRGFRVLDTCTGLGYTSIAAIARGASLVYTVEVDEIVLQLAALNPWSHRLRD-KRIR 212
Query: 181 VIHGDSYELVKNFDNESFDVIIHDPPRFSLA-GELYSREFYEELYRILKPGGRLFHYVGN 239
+I GD+ E+V++F + +FD +IHDPPRFS + LY+ E Y E +RIL+ GGRLFHY G
Sbjct: 213 IILGDAVEVVRDFGDSAFDALIHDPPRFSKSTSSLYTLELYREFHRILRRGGRLFHYTGE 272
Query: 240 PGKKYRRKDMQRGVMERLRSVGFIKVKKVEEALGVFALK 278
PG + R ++ V LR GF + ALG+ A+K
Sbjct: 273 PG-RIRGLNLPGRVARLLREAGFEVLGFRRRALGLVAVK 310
>pir||F82758 conserved hypothetical protein XF0811 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105711|gb|AAF83621.1|AE003921_1 (AE003921)
conserved hypothetical protein [Xylella fastidiosa]
Length = 286
Score = 136 bits (338), Expect = 4e-31
Identities = 79/204 (38%), Positives = 118/204 (57%), Gaps = 9/204 (4%)
Query: 66 TVYFFKDGELYKAAIA-GEHFYKLVPTI--PPTIEIDGIRMHRTKDTDPLRDTLAKVETV 122
T+Y++ DG+ + A KLVPT PT EIDGI+M + P D KV V
Sbjct: 71 TIYYW-DGQNFTAISRFSGSLIKLVPTPWGVPTFEIDGIKMLPSLRVSPFEDARRKVALV 129
Query: 123 KPRRGENVLDTCMGLGYTAIESARRGAF-VLTIEKDKNVIELAKINPWS---RELFEWPN 178
+P+ G+ VLDTC GLGY A GA + + EK+ +V+ L +NPWS + +
Sbjct: 130 RPQ-GKTVLDTCGGLGYFAACCLEAGAIHIRSFEKNPDVLWLRTLNPWSPNPQAIQANQR 188
Query: 179 IKVIHGDSYELVKNFDNESFDVIIHDPPRFSLAGELYSREFYEELYRILKPGGRLFHYVG 238
++++ GD + +++ + S D I+HDPPRFS+AGELY+ FY++L R+L G++FHY G
Sbjct: 189 LELVGGDIAQAIEDLPDASVDAILHDPPRFSIAGELYALRFYDQLARVLCRDGQMFHYTG 248
Query: 239 NPGKKYRRKDMQRGVMERLRSVGF 262
P + +D+ R + RL GF
Sbjct: 249 TPTQLSHGRDVPREIARRLEQAGF 272
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.142 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107645950
Number of Sequences: 2977
Number of extensions: 4657274
Number of successful extensions: 11512
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11500
Number of HSP's gapped (non-prelim): 5
length of query: 285
length of database: 189,106,746
effective HSP length: 54
effective length of query: 231
effective length of database: 156,788,448
effective search space: 36218131488
effective search space used: 36218131488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)