BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1737 (hydG-like) DE:hydrogenase, subunit gamma related
protein
(278 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75069 hydrogenase, chain gamma related protein PAB1737 - P... 568 e-161
sp|Q9X1X4|PYRK_THEMA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 306 2e-82
pir||E71288 probable hydrogenase, gamma chain (hydG) - syphilis ... 279 4e-74
pir||E71200 hypothetical protein PH1874 - Pyrococcus horikoshii ... 243 2e-63
pir||C75024 hydrogenase, gamma chain (hydg). PAB1213 - Pyrococcu... 241 6e-63
pir||F71076 hypothetical protein PH0878 - Pyrococcus horikoshii ... 230 2e-59
pir||G70479 hypothetical protein aq_2098 - Aquifex aeolicus >gi|... 162 4e-39
gb|AAB93308.1| (L04500) unknown [Eubacterium acidaminophilum] 153 3e-36
dbj|BAB06254.1| (AP001515) dihydroorotate dehydrogenase (electro... 127 1e-28
sp|P46536|PYRK_BACCL DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS... 118 7e-26
sp|P25983|PYRK_BACSU DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS... 115 6e-25
sp|Q58841|PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 115 8e-25
sp|O57738|PYRK_PYRHO PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 108 8e-23
sp|Q9UXV5|PYRK_PYRAB PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 101 1e-20
pir||E71212 hypothetical protein PH1965 - Pyrococcus horikoshii ... 100 2e-20
gi|11498139 cytochrome-c3 hydrogenase, subunit gamma [Archaeoglo... 95 8e-19
sp|O67329|PYRK_AQUAE PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 85 1e-15
sp|O27280|PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 83 3e-15
sp|P56968|PYRK_LACLC DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS... 83 3e-15
emb|CAC11546.1| (AL445064) nife hydrogenase gamma subunit relate... 80 2e-14
pir||H75069 cytochrome-c3 hydrogenase, chain gamma PAB0639 - Pyr... 79 5e-14
gb|AAF61852.1|AF176650_2 (AF176650) sulfhydrogenase II subunit g... 73 5e-12
sp|P26475|ASRB_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT B >gi|9... 71 1e-11
emb|CAA53035.1| (X75255) hydrogenase (gamma subunit) [Pyrococcus... 69 4e-11
pir||S48834 cytochrome-c3 hydrogenase (EC 1.12.2.1) gamma chain ... 69 4e-11
pir||H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyr... 69 4e-11
gb|AAB94934.1| (AF039208) NiFe hydrogenase gamma subunit [Thermo... 69 7e-11
>pir||F75069 hydrogenase, chain gamma related protein PAB1737 - Pyrococcus
abyssi (strain Orsay) >gi|5458371|emb|CAB49859.1|
(AJ248286) hydrogenase, subunit gamma related protein
[Pyrococcus abyssi]
Length = 278
Score = 568 bits (1449), Expect = e-161
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60
MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT
Sbjct: 1 MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60
Query: 61 IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAM 120
IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAM
Sbjct: 61 IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAM 120
Query: 121 KEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRK 180
KEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRK
Sbjct: 121 KEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRK 180
Query: 181 IDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDG 240
IDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDG
Sbjct: 181 IDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDG 240
Query: 241 PEFDAHLVDWDELMKRLSYYRDLERISLEKWERERGMV 278
PEFDAHLVDWDELMKRLSYYRDLERISLEKWERERGMV
Sbjct: 241 PEFDAHLVDWDELMKRLSYYRDLERISLEKWERERGMV 278
>sp|Q9X1X4|PYRK_THEMA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451851|pir||G72230 hypothetical protein TM1639 -
Thermotoga maritima (strain MSB8)
>gi|4982212|gb|AAD36706.1|AE001806_16 (AE001806)
electron transfer protein, putative [Thermotoga
maritima]
Length = 282
Score = 306 bits (775), Expect = 2e-82
Identities = 147/274 (53%), Positives = 201/274 (72%), Gaps = 2/274 (0%)
Query: 3 KILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSITIV 62
+I+ K ++A + F + +P ++K A+PGQFV+IRLHE+GERIPLT+AD ++G +V
Sbjct: 8 EIVKKVKIAEDVFDFWIHSPSVSKEARPGQFVVIRLHEKGERIPLTVADTKPEEGLFRMV 67
Query: 63 AQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAMKE 122
+ VGKTT EL +EGD I D++GPLGNPS ++ +G V++VGGGVG+A +YP+A+A+KE
Sbjct: 68 VKVVGKTTHELSLKKEGDTILDVVGPLGNPSEIENYGNVLLVGGGVGIATLYPIAKALKE 127
Query: 123 KGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKID 182
GN + ++LG RTKD + D+ +++SD V++ T+DGS GMKG T A+ KL E RK D
Sbjct: 128 AGNNITTVLGARTKDYLIMVDEFKEISD-VLLVTDDGSAGMKGVVTDAMDKLFRE-RKFD 185
Query: 183 LVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPE 242
+ AVGP IMMK + +G+ SLNPIMVDGTGMCGACRVTV G+IKFACVDGPE
Sbjct: 186 ICWAVGPTIMMKFCTLKAREFGVPIWVSLNPIMVDGTGMCGACRVTVSGQIKFACVDGPE 245
Query: 243 FDAHLVDWDELMKRLSYYRDLERISLEKWERERG 276
F VDWDEL+KRL+ YR+ E+IS E++ + G
Sbjct: 246 FRGEEVDWDELLKRLAQYREQEKISYERFLKTAG 279
>pir||E71288 probable hydrogenase, gamma chain (hydG) - syphilis spirochete
>gi|3323041|gb|AAC65704.1| (AE001245) hydrogenase, gamma
chain (hydG) [Treponema pallidum]
Length = 280
Score = 279 bits (705), Expect = 4e-74
Identities = 138/265 (52%), Positives = 183/265 (68%), Gaps = 1/265 (0%)
Query: 1 MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLH-ERGERIPLTIADFDRDKGSI 59
MF IL K++ +P + +V AP IAK+ GQFV+++L E ERIPLTIAD D+G I
Sbjct: 1 MFSILEKKQFSPQVFYLKVHAPDIAKNRAAGQFVLVQLDDEYAERIPLTIADAHADEGWI 60
Query: 60 TIVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARA 119
+V Q VG TT L E GD I +LGPLGNP+ ++ GTV V GGVG A +YP+A+A
Sbjct: 61 ALVIQTVGATTMRLCEKEVGDSISVVLGPLGNPTLIENVGTVACVAGGVGAAPLYPIAQA 120
Query: 120 MKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGR 179
K GN+VI ILG R +DL+ +E+++R ++DE+++ T+DGSYG KG T L++L
Sbjct: 121 HKRAGNHVIVILGARNRDLIIFEEEMRALADELVIVTDDGSYGRKGLVTEPLRELCXRAS 180
Query: 180 KIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVD 239
V A+GP IMMK AE T+P+GI+TV SLN IM+DGTGMCG CRV VG EIKF CVD
Sbjct: 181 CPQEVVAIGPPIMMKFCAETTRPFGIRTVVSLNTIMIDGTGMCGGCRVNVGSEIKFVCVD 240
Query: 240 GPEFDAHLVDWDELMKRLSYYRDLE 264
GPEFD H VD++ +M+R+ ++ E
Sbjct: 241 GPEFDGHQVDFESMMRRMRAFQARE 265
>pir||E71200 hypothetical protein PH1874 - Pyrococcus horikoshii
>gi|3258313|dbj|BAA30996.1| (AP000007) 298aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 298
Score = 243 bits (614), Expect = 2e-63
Identities = 131/284 (46%), Positives = 183/284 (64%), Gaps = 12/284 (4%)
Query: 1 MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60
M+KIL K+ +A +++ AP +AK +PGQFVI+R GERIPLT +DR++G I
Sbjct: 10 MYKILEKKEIAMRNTWYKIYAPHVAKKVQPGQFVIVRAFPNGERIPLTPIMWDREEGWIV 69
Query: 61 IVAQEVGKTTKELGT-YEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARA 119
+VA GKTT ++ +EGD I ++ GPLGNP+ ++KFG ++ +G VG+AE+YP+A+A
Sbjct: 70 LVAFTKGKTTMKMAMELKEGDEILNVAGPLGNPAPMEKFGKILAIGAYVGIAEVYPIAKA 129
Query: 120 MKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIV---------TTNDGSYGMKGFTTHA 170
+E GN V + L + +V +D K IV + + + + T
Sbjct: 130 WQEIGNDVTT-LHVTFEPMVILKDYFEKAVSRHIVEPVKIDQEKSFQENTKNVTKALTAK 188
Query: 171 LQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVG 230
+++L+D DLV VGP KAV E+ K YGI L+PIMVDGTGMCGACRVTVG
Sbjct: 189 VKELLDN-ENWDLVFMVGPPGDQKAVFEVVKKYGIPMKVDLHPIMVDGTGMCGACRVTVG 247
Query: 231 GEIKFACVDGPEFDAHLVDWDELMKRLSYYRDLERISLEKWERE 274
GE+KFACVDGPEFDA+LVDWDEL+ R+ +Y LE+++LEK+ E
Sbjct: 248 GEVKFACVDGPEFDAYLVDWDELIHRVGFYSKLEKLALEKYMEE 291
>pir||C75024 hydrogenase, gamma chain (hydg). PAB1213 - Pyrococcus abyssi
(strain Orsay) >gi|5459147|emb|CAB50633.1| (AJ248288)
HYDROGENASE, GAMMA CHAIN (HYDG). [Pyrococcus abyssi]
Length = 292
Score = 241 bits (609), Expect = 6e-63
Identities = 133/283 (46%), Positives = 180/283 (62%), Gaps = 10/283 (3%)
Query: 1 MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60
++KIL K +A ++V+AP +AK +PGQFVI+R + GERIPLT +DRD+G I
Sbjct: 4 VYKILEKREIAMRNTWYKVQAPHVAKKVQPGQFVIVRAFQNGERIPLTPVMWDRDEGWIV 63
Query: 61 IVAQEVGKTTKELGT-YEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARA 119
++A GKTT + T +EGDYI ++ GPLGNP+ ++KFG V+ +G G+ E+YP+A+A
Sbjct: 64 LIAFTRGKTTMRMATELKEGDYILNVAGPLGNPAPMEKFGKVLAIGAYTGIVEVYPIAKA 123
Query: 120 MKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTT----NDGSY--GMKGFTTHALQK 173
+E GN V + L + +V ++ K IV D S+ MK T K
Sbjct: 124 WQEIGNDVTT-LHVTLEPMVMLKEYFEKAVSRHIVEPVKFDPDKSFPENMKNVTKALTGK 182
Query: 174 LID--EGRKIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGG 231
+ + E DLV VGP KAV + K +GI L+PIMVDGTGMCGACRVTVGG
Sbjct: 183 VRELLETEDWDLVFMVGPPGDQKAVFNVVKEFGIPMRVDLHPIMVDGTGMCGACRVTVGG 242
Query: 232 EIKFACVDGPEFDAHLVDWDELMKRLSYYRDLERISLEKWERE 274
EIKFACVDGPEFDA+ VDWDEL+ R+ +Y LE+++LEK+ E
Sbjct: 243 EIKFACVDGPEFDAYQVDWDELIHRVGFYSKLEKLALEKYMEE 285
>pir||F71076 hypothetical protein PH0878 - Pyrococcus horikoshii
>gi|3257289|dbj|BAA29972.1| (AP000004) 285aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 285
Score = 230 bits (580), Expect = 2e-59
Identities = 126/283 (44%), Positives = 184/283 (64%), Gaps = 9/283 (3%)
Query: 2 FKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSITI 61
+KI K L+P EVEAP IAK KPGQFVI LHERGER+P+++ + + G I +
Sbjct: 6 YKITDKRDLSPIDFFVEVEAPHIAKAWKPGQFVIFILHERGERVPMSV--YKAENGRIGM 63
Query: 62 VAQEVGKTTKELG-TYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGV-GVAEIYPVARA 119
+++GKT+ +L + GD + ++GPLG P V +G VV V G AE Y +A
Sbjct: 64 FIRKLGKTSLQLYYEFNVGDEFYSMVGPLGKPIKVKYYGNVVFASDAVCGQAENYATLKA 123
Query: 120 MKEKGNYVISILGFRTKDLVFWEDKLRK-VSDEVIVTTNDGSYGMKGFTTHALQKLIDEG 178
MKE GNY ISI F + V+ E+ L K V+DE +TT DGS G+KG +++LI++
Sbjct: 124 MKEVGNYTISIQTFENAENVYPEEFLAKPVADEHYLTTEDGSVGIKGHYLDIVKELIEKD 183
Query: 179 RKIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACV 238
K+D++ A G + +AELT+PYGI T A++ IMVDGTGMCG+CR+ GE+KFAC
Sbjct: 184 -KVDIIFAGGKLGSLAKLAELTRPYGIPTYATVRQIMVDGTGMCGSCRILYDGEVKFACR 242
Query: 239 DGPEFDAHLVDWDELMKRLSYYRDLERISLEK---WERERGMV 278
DGP FDAH VDW+++++R + + + ER++ E+ + R++G++
Sbjct: 243 DGPVFDAHKVDWEDVLRRANRFLEQERLAKERYLEYLRKKGVI 285
>pir||G70479 hypothetical protein aq_2098 - Aquifex aeolicus
>gi|2984312|gb|AAC07835.1| (AE000772) putative protein
[Aquifex aeolicus]
Length = 279
Score = 162 bits (406), Expect = 4e-39
Identities = 93/274 (33%), Positives = 153/274 (54%), Gaps = 4/274 (1%)
Query: 1 MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60
M+K+L KERL P L EV+ R AK KPGQ+ +++ +E E IPL+ D + S T
Sbjct: 1 MYKVLRKERLTPKAVLLEVQDER-AKLVKPGQYALVQANEESEPIPLSFLDVK--ESSYT 57
Query: 61 IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAM 120
+ + G+ T E+ E + I I P G+P V +G V+++ GVA + + RA+
Sbjct: 58 FLVEVGGRATLEIAELVE-EKIQFIEAPCGSPFPVKNYGKVLLISKNWGVAPLINIGRAL 116
Query: 121 KEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRK 180
KE+ N + + ++ VF + ++S+E ++ T DGS G +G + AL I+ K
Sbjct: 117 KEESNEIYFVHVAEDEERVFLTKEASEISEEFLLFTEDGSLGEEGNSEWALGYFIENFGK 176
Query: 181 IDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDG 240
DL+ + G + + + + I +A +N ++D G+C ACRV V G+ K AC+DG
Sbjct: 177 PDLIVSAGSNLDSQMINRFAEERNIPHIAMVNAHILDANGLCLACRVLVEGQEKLACIDG 236
Query: 241 PEFDAHLVDWDELMKRLSYYRDLERISLEKWERE 274
P FDA VDWD +++ ++Y++ E +L+ + RE
Sbjct: 237 PWFDASKVDWDYAIQKEAFYKEEEEKALKTFLRE 270
>gb|AAB93308.1| (L04500) unknown [Eubacterium acidaminophilum]
Length = 168
Score = 153 bits (382), Expect = 3e-36
Identities = 76/167 (45%), Positives = 111/167 (65%), Gaps = 7/167 (4%)
Query: 1 MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60
MFKI+ K+ LAP I L +++APR+AK AKPGQFVIIR+ E+GERIPLTI D+D++ G++T
Sbjct: 1 MFKIVEKKVLAPSIFLMKIDAPRVAKSAKPGQFVIIRMDEKGERIPLTICDYDKEAGTVT 60
Query: 61 IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSH-----VD--KFGTVVMVGGGVGVAEI 113
IV Q +G +T+ + + EGDY D +GPLG S +D K ++ V GGVG A +
Sbjct: 61 IVVQSMGCSTRRMAEFNEGDYFSDFVGPLGRESEFVHESIDALKNKKILFVAGGVGTAPV 120
Query: 114 YPVARAMKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGS 160
YP + + E G I+G + K+++ E++L+ VS + T+DGS
Sbjct: 121 YPQVKWLHENGIDADVIIGAKNKEMMIMEEELKSVSKNLYPATDDGS 167
>dbj|BAB06254.1| (AP001515) dihydroorotate dehydrogenase (electron transfer subunit)
[Bacillus halodurans]
Length = 259
Score = 127 bits (316), Expect = 1e-28
Identities = 82/251 (32%), Positives = 133/251 (52%), Gaps = 18/251 (7%)
Query: 4 ILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGE---RIPLTIADFDRDKGSIT 60
I +R+A GI +V R+ + PGQFV +++ + E R PL+I D +T
Sbjct: 9 ITSHQRIADGIYEMKVTGERVKEMTSPGQFVHVKVDDGSELLLRRPLSICHVDEQTSELT 68
Query: 61 IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFG---TVVMVGGGVGVAEIYPVA 117
++ + G+ TK L G+ + DILGPLG ++ T +++GGG+GV +Y +A
Sbjct: 69 LLYRAEGQGTKRLAQKARGETV-DILGPLGQGFPLEAIASGETALLIGGGIGVPPLYYLA 127
Query: 118 RAMKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDE 177
+ +K KG +VI++LGF++ F+ ++ ++ + T DG+ G KGF TH L + E
Sbjct: 128 KRLKAKGCHVINVLGFQSAKDSFYYEQFSQLGTTYVATV-DGTAGTKGFVTHVLNQ---E 183
Query: 178 GRKIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGE----- 232
++V++ GP M+KAV+E + G + S+ M G G C AC V G+
Sbjct: 184 ALSYNVVYSCGPTPMLKAVSE--RFIGERAFISMEERMGCGIGACFACVCHVTGDEAGTA 241
Query: 233 IKFACVDGPEF 243
+ C DGP F
Sbjct: 242 YRKICTDGPVF 252
>sp|P46536|PYRK_BACCL DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|2126771|pir||I40170 hypothetical protein 2 -
Bacillus caldolyticus >gi|312444|emb|CAA51740.1|
(X73308) ORF2 [Bacillus caldolyticus]
Length = 257
Score = 118 bits (293), Expect = 7e-26
Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 20/228 (8%)
Query: 29 KPGQFVIIRLHERGE---RIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDI 85
+PGQFV +++ + R PL++ D +G TI+ ++ GK T L + GD + D+
Sbjct: 34 QPGQFVHVKVAASADPLLRRPLSLCHIDHKQGQCTIIYRQEGKGTALLAQKQPGDTV-DV 92
Query: 86 LGPLGN--PSHVDKFGT-VVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWE 142
LGPLGN P G+ ++VGGG+GV +Y +A+ + ++G V+S+LGF+TK VF+E
Sbjct: 93 LGPLGNGFPLEAAPAGSRALLVGGGIGVPPLYELAKQLTKRGVKVVSVLGFQTKAAVFYE 152
Query: 143 DKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAEL--T 200
++ E V T+DGS+G G T ++ + D+++A GP M++A+AE
Sbjct: 153 EEFAAFG-ETHVATDDGSHGTAGRVTDVIEA---RSLEFDVLYACGPKPMLRALAERFPN 208
Query: 201 KPYGIKTVASLNPIMVDGTGMCGACRVTVGGE---IKFACVDGPEFDA 245
+P SL M G G C AC V G K C DGP F A
Sbjct: 209 RP----VYLSLEERMGCGVGACFACVCHVPGSETAYKKVCSDGPVFRA 252
>sp|P25983|PYRK_BACSU DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|98369|pir||G39845 dihydroorotate dehydrogenase
(electron transfer subunit) pyrDII - Bacillus subtilis
>gi|143391|gb|AAA21271.1| (M59757) unknown [Bacillus
subtilis] >gi|2633926|emb|CAB13427.1| (Z99112)
dihydroorotate dehydrogenase (electron transfer subunit)
[Bacillus subtilis]
Length = 256
Score = 115 bits (285), Expect = 6e-25
Identities = 82/229 (35%), Positives = 129/229 (55%), Gaps = 18/229 (7%)
Query: 30 PGQFVIIRLHERGE---RIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDIL 86
PGQF+ +++ E R P++IAD + +K +TI+ + G+ T+ L ++G+ + D+L
Sbjct: 34 PGQFLHLKVSEAVTPLLRRPISIADVNFEKNEVTIIYRVDGEGTRLLSLKQQGELV-DVL 92
Query: 87 GPLGNPSHVDKFG---TVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWED 143
GPLGN V++ T ++VGGGVGV + +++ + EKG VI +LGF++ VF+E+
Sbjct: 93 GPLGNGFPVNEVQPGKTALLVGGGVGVPPLQELSKRLIEKGVNVIHVLGFQSAKDVFYEE 152
Query: 144 KLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPY 203
+ R+ D V T DGSYG GF T +++ + + D++ + GP M+KA L + Y
Sbjct: 153 ECRQYGD-TYVATADGSYGETGFVTDVIKR---KKLEFDILLSCGPTPMLKA---LKQEY 205
Query: 204 GIKTV-ASLNPIMVDGTGMCGACRV-TVGGEIKF--ACVDGPEFDAHLV 248
K V S+ M G G C AC T E + C+DGP F A V
Sbjct: 206 AHKEVYLSMEERMGCGIGACFACVCHTNESETSYVKVCLDGPVFKAQEV 254
>sp|Q58841|PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|2127836|pir||E64480 cytochrome-c3 hydrogenase gamma
chain homolog - Methanococcus jannaschii
>gi|1592091|gb|AAB99455.1| (U67585) cytochrome-c3
hydrogenase, gamma chain [Methanococcus jannaschii]
Length = 257
Score = 115 bits (284), Expect = 8e-25
Identities = 81/238 (34%), Positives = 123/238 (51%), Gaps = 21/238 (8%)
Query: 29 KPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGP 88
KPGQF ++ L E+ P + K S ++ VG+ TK++ +EGD I + GP
Sbjct: 31 KPGQFAMLWLPGVDEK-PFGFSS----KNSFSVA--RVGEFTKKMHELKEGDII-GVRGP 82
Query: 89 LGNPSHVDKFGTVVM-VGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWEDKLRK 147
G ++ + G V+ V GG+G A I ++G + +ILG RTK+ + + D+ K
Sbjct: 83 YG--TYFEPIGDKVLAVAGGIGAAPIITAVEEFSKQGIEITTILGARTKEELLFLDRFEK 140
Query: 148 VSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPYGIKT 207
VS + + T+DGS+G KGFTT +++++ E K DL+ GP IMMK V E+ Y I
Sbjct: 141 VS-RLEICTDDGSFGFKGFTTEKMKEVLKE-EKFDLIITCGPEIMMKKVVEIANEYNIPV 198
Query: 208 VASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDWDELMKRLSYYRDLER 265
S+ M G G+CG C V E C DGP F W + +K + + +R
Sbjct: 199 QVSMERYMKCGIGICGQC--CVDDEGLCVCKDGPVF------WGDKLKFIREFGKYKR 248
>sp|O57738|PYRK_PYRHO PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
Length = 247
Score = 108 bits (267), Expect = 8e-23
Identities = 82/216 (37%), Positives = 114/216 (51%), Gaps = 25/216 (11%)
Query: 30 PGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGPL 89
PGQF+++ L E+ P ++AD D IV + VG T +L T EEGDY+ I GP
Sbjct: 30 PGQFIMVWLPGVNEK-PFSLADKD------LIVVKRVGPFTSKLFTLEEGDYLW-IRGPY 81
Query: 90 GNPSHVDKFGTVVMVGGGVGVAEIYPVAR--AMKEKGNYVISILGFRTKDLVFWEDKLRK 147
GN K G V +V GG+G+ IY +A+ ++EK + I G R KD + D +
Sbjct: 82 GNGFKEVK-GKVALVAGGIGIPPIYALAKHGKLEEK----VLIYGARGKDELALLD-IEN 135
Query: 148 VSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPYGIKT 207
DE+++TT+DGSYG+KGF T L K +E V+A GP IM+ V E+ +T
Sbjct: 136 YVDEIVITTDDGSYGIKGFPTDVLAKRKEE---FSQVYACGPEIMLAKVLEIMNYE--RT 190
Query: 208 VASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEF 243
S M G G+CG+C + C DGP F
Sbjct: 191 QISAERYMKCGIGICGSCALGP----YLVCRDGPVF 222
>sp|Q9UXV5|PYRK_PYRAB PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451842|pir||D75027 dihydroorotate dehydrogenase
electron transfer chain PAB1150 - Pyrococcus abyssi
(strain Orsay) >gi|5459172|emb|CAB50658.1| (AJ248288)
DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
[Pyrococcus abyssi]
Length = 247
Score = 101 bits (248), Expect = 1e-20
Identities = 80/230 (34%), Positives = 119/230 (50%), Gaps = 29/230 (12%)
Query: 30 PGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGPL 89
PGQF+++ L E+ P ++AD D IV ++VG T +L EEGDY+ I GP
Sbjct: 30 PGQFIMLWLPGINEK-PFSLADKD------LIVVKKVGPFTSKLFKLEEGDYVW-IRGPY 81
Query: 90 GNPSHVDKFGTVVMVGGGVGVAEIYPVARA--MKEKGNYVISILGFRTKDLVFWEDKLRK 147
GN G V +V GG+G+ IY +A+ ++EK + I G R+K+ + D +
Sbjct: 82 GN-GFKSVEGKVALVAGGIGIPPIYALAKYGNLEEK----VLIYGARSKEELATLD-IEN 135
Query: 148 VSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDL--VHAVGPAIMMKAVAELTKPYGI 205
DEV++TT+DGS G+KGF T L + RK++ V+A GP +M+ V E+
Sbjct: 136 YVDEVVITTDDGSAGIKGFPTDVLAR-----RKVEFSQVYACGPEVMLAKVLEIMNYE-- 188
Query: 206 KTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDWDELMK 255
+T S M G G+CG+C + C DGP F + E+ K
Sbjct: 189 RTQISAERYMKCGIGICGSCALGP----YLVCRDGPVFTGEQLKGTEIGK 234
>pir||E71212 hypothetical protein PH1965 - Pyrococcus horikoshii
>gi|3258409|dbj|BAA31092.1| (AP000007) 213aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 213
Score = 100 bits (247), Expect = 2e-20
Identities = 76/200 (38%), Positives = 104/200 (52%), Gaps = 24/200 (12%)
Query: 46 PLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVG 105
P ++AD D IV + VG T +L T EEGDY+ I GP GN K G V +V
Sbjct: 11 PFSLADKD------LIVVKRVGPFTSKLFTLEEGDYLW-IRGPYGNGFKEVK-GKVALVA 62
Query: 106 GGVGVAEIYPVAR--AMKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGM 163
GG+G+ IY +A+ ++EK + I G R KD + D + DE+++TT+DGSYG+
Sbjct: 63 GGIGIPPIYALAKHGKLEEK----VLIYGARGKDELALLD-IENYVDEIVITTDDGSYGI 117
Query: 164 KGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCG 223
KGF T L K +E V+A GP IM+ V E+ +T S M G G+CG
Sbjct: 118 KGFPTDVLAKRKEE---FSQVYACGPEIMLAKVLEIMNYE--RTQISAERYMKCGIGICG 172
Query: 224 ACRVTVGGEIKFACVDGPEF 243
+C + C DGP F
Sbjct: 173 SCALGP----YLVCRDGPVF 188
>gi|11498139 cytochrome-c3 hydrogenase, subunit gamma [Archaeoglobus fulgidus]
>gi|9297031|sp|O29722|PYRK_ARCFU PROBABLE DIHYDROOROTATE
DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451846|pir||H69315 cytochrome-c3 hydrogenase,
subunit gamma homolog - Archaeoglobus fulgidus
>gi|2650096|gb|AAB90709.1| (AE001068) cytochrome-c3
hydrogenase, subunit gamma [Archaeoglobus fulgidus]
Length = 232
Score = 95.2 bits (233), Expect = 8e-19
Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 23/230 (10%)
Query: 24 IAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIH 83
I+ + PGQFV++ + E IPL+++ S+T+ A VG+TT L +EG Y+
Sbjct: 23 ISLRSYPGQFVMVYV-PGCEEIPLSLSS----SNSVTVKA--VGETTASLINAKEGQYV- 74
Query: 84 DILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWED 143
+ G G+ K ++V GG+G+A + + + + G+ V + G RT +FW D
Sbjct: 75 GVRGAFGSAFTPSK--RALIVAGGIGIAPMKYLYEYLMKCGSKVSVVYGERTAKNLFWLD 132
Query: 144 KLRKVSDEVIVTTNDGSYGMKGFTTHALQ-KLIDEGRKIDLVHAVGPAIMMKAVAELTKP 202
K D + VTT DGS+G+KG AL+ + +DE KI + G M++A + K
Sbjct: 133 KF----DRITVTTEDGSFGLKGTVLDALKLEKLDEYEKI---YVCGSEGMLRATYDFLKE 185
Query: 203 YGI--KTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDW 250
K SL M G G+CG+C + G + C DGP F+A + W
Sbjct: 186 RDALDKAEFSLERYMRCGIGVCGSCVIENGLRV---CADGPVFNASELPW 232
>sp|O67329|PYRK_AQUAE PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451841|pir||F70412 dihydroorotate dehydrogenase
electron transfer subunit - Aquifex aeolicus
>gi|2983725|gb|AAC07287.1| (AE000733) dihydroorotate
dehydrogenase electron transfer subunit [Aquifex
aeolicus]
Length = 251
Score = 84.7 bits (206), Expect = 1e-15
Identities = 67/223 (30%), Positives = 105/223 (47%), Gaps = 13/223 (5%)
Query: 23 RIAKHAKPGQFVIIRLHERGE---RIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEG 79
+I K +PG F +I+ + + R +AD + K GK T L + G
Sbjct: 29 KILKQIEPGHFAMIKPSDTYDPMGRRAFAVADIEEHKA--VFYYDVYGKGTYLLSKRKPG 86
Query: 80 DYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLV 139
+ + L PLG + +++GGGVG+A + +A+ +++ G V G R+++ +
Sbjct: 87 ERLKTFL-PLGKRLFSYEGDKHLLIGGGVGLAGLTLLAKKLRDMGKKVFIAYGGRSREHL 145
Query: 140 FWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAEL 199
+ L K + TNDGS G KGF T L++ + +VHA GP M+K + E+
Sbjct: 146 GMVEWLEKEEFPYELFTNDGSAGRKGFVTEILKEFSTDW----VVHACGPKPMLKTIKEM 201
Query: 200 TKPYGIKTVASLNPIMVDGTGMCGACRV-TVGGEIKFACVDGP 241
G K SL M G G+C C V T G+ K C +GP
Sbjct: 202 KT--GHKVYFSLEERMACGWGVCLGCVVKTRDGKFKRVCYEGP 242
>sp|O27280|PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451852|pir||H69028 cytochrome-c3 hydrogenase, gamma
subunit - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622322|gb|AAB85701.1| (AE000889)
cytochrome-c3 hydrogenase, gamma subunit
[Methanobacterium thermoautotrophicum]
Length = 266
Score = 83.5 bits (203), Expect = 3e-15
Identities = 63/232 (27%), Positives = 107/232 (45%), Gaps = 15/232 (6%)
Query: 26 KHAKPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDI 85
+ +PGQFV++ + + P++++ D + I I + VG+ T + EGD + I
Sbjct: 33 REVRPGQFVMV--WDFRDEKPMSVSLIDPVRSEIGISIRRVGEFTDRVHGLSEGDLL-GI 89
Query: 86 LGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWEDKL 145
GP G + +++VGGG+G+A + +A +G V +++ RT D + + D+L
Sbjct: 90 RGPYGRGFEL-MGRDILLVGGGIGMAPLAALADEATARGMRVDALVAARTADELLFLDRL 148
Query: 146 RKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPYGI 205
+ T+DGS G KGF A ++L+ D+ GP MM V + +
Sbjct: 149 EAAGVNISTCTDDGSCGFKGF---AHERLLTLEENHDMAAVCGPEPMMFQVMRILDERDV 205
Query: 206 KTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDWDELMKRL 257
SL M G+CG C + G C +GP F W + + R+
Sbjct: 206 PAQLSLERYMKCAVGICGQCCLDDTG--FRVCAEGPVF------WSQELSRV 249
>sp|P56968|PYRK_LACLC DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
Length = 262
Score = 83.1 bits (202), Expect = 3e-15
Identities = 68/245 (27%), Positives = 125/245 (50%), Gaps = 24/245 (9%)
Query: 15 NLFEV--EAPRIAKHAKPGQFVIIRLHERGE--RIPLTIADFDRDKGSITIVAQEVGKTT 70
N+FE+ + + + PGQF+ + + R P++I+ +D+ + TI+ + +TT
Sbjct: 19 NIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETT 78
Query: 71 K--ELGTYEEGDYIHDILGPLGNP---SHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGN 125
+L E G + D++GPLGN + V ++++GGG+GV +Y +A+ +++ G
Sbjct: 79 GTYKLSKLESGAKV-DVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTGC 137
Query: 126 YVISILGFRTKDLVFWEDKLRKVSDEVI-VTTNDGSYGMKGFTTHALQKLIDEGRKIDLV 184
+ +LGF ++++ E++ + + + + T+DGSYG KG + ++ E +D +
Sbjct: 138 QMTILLGFASENVKILENEFSNLKNVTLKIATDDGSYGTKGHVGMLMNEIDFE---VDAL 194
Query: 185 HAVGPAIMMKAVAELTKPYG--IKTVASLNPIMVDGTGMCGAC----RVTVGGEIKFACV 238
+ G M+KAVA K Y + S+ M G G C AC + +K C
Sbjct: 195 YTCGAPAMLKAVA---KKYDQLERLYISMESRMACGIGACYACVEHDKEDESHALK-VCE 250
Query: 239 DGPEF 243
DGP F
Sbjct: 251 DGPVF 255
>emb|CAC11546.1| (AL445064) nife hydrogenase gamma subunit related protein
[Thermoplasma acidophilum]
Length = 250
Score = 80.4 bits (195), Expect = 2e-14
Identities = 66/217 (30%), Positives = 107/217 (48%), Gaps = 22/217 (10%)
Query: 29 KPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGP 88
KPGQFV++ L GE IP++++ KG I + GK ++ + E G + I GP
Sbjct: 28 KPGQFVMVWLPGLGE-IPMSLSYVGSPKG---ITVKAYGKVSQAMIDMEPGHEFY-IRGP 82
Query: 89 LGNPSHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWEDKLRKV 148
GN ++ G +++GGG G+A + P+A + + +++ +TK+ + + D+ +
Sbjct: 83 YGNGFQIES-GRKLIIGGGSGIASLLPIADSDTD------ALISAKTKEELIFTDRFPE- 134
Query: 149 SDEVIVTTNDGSYGMKGFTTHALQKL-IDEGRKIDLVHAVGPAIMMKAVAELTKPYGIKT 207
+ + T+DGS G GF L +L I RKI + GP M+ V + +
Sbjct: 135 -SRLFIATDDGSEGFHGFPHEFLDRLDISVYRKI---YVCGPEPMLYRVMQKLASMNARA 190
Query: 208 VASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFD 244
SL M G G+C +C +VGG C GP FD
Sbjct: 191 EFSLERTMKCGIGICDSC--SVGG--LQVCRQGPVFD 223
>pir||H75069 cytochrome-c3 hydrogenase, chain gamma PAB0639 - Pyrococcus abyssi
(strain Orsay) >gi|5458373|emb|CAB49861.1| (AJ248286)
cytochrome-c3 hydrogenase, subunit gamma [Pyrococcus
abyssi]
Length = 288
Score = 79.2 bits (192), Expect = 5e-14
Identities = 80/288 (27%), Positives = 125/288 (42%), Gaps = 46/288 (15%)
Query: 3 KILHKERLAPGINLFEVEA--PRIAKHA--KPGQFVIIRLHERGERIPLTIADFDRDKGS 58
+I+ L P LF ++ P + + KPGQFVI+ + GE P+++ K
Sbjct: 10 RIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGE-FPISLCSSPTRK-P 67
Query: 59 ITIVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKF--GTVVMVGGGVGVAEIYPV 116
I + + VG+ T+ + + EGD I + GP GN ++K T+++V GG+G+A + V
Sbjct: 68 IQLCIRRVGRLTRLIHKFSEGDVI-GVRGPYGNGFPLEKMEGATLILVAGGLGMAPLRSV 126
Query: 117 ARAMKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGS---------------- 160
+ G + L + TK +ED L + DE+I G
Sbjct: 127 LWYAIDSGKFEKIYLYYGTKS---YEDILFR--DEIIYLLKHGEKLNCHVKLAYEVETPS 181
Query: 161 --YGMKGFTTHALQKLIDE---GRKIDLVHAV----GPAIMMKAVAELTKPYGI---KTV 208
Y KGF+ + L+ + G D+ ++ GP +M K V + G+ +
Sbjct: 182 CVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241
Query: 209 ASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDWDELMKR 256
+L M G G CG C V IK+ C DGP F WD L R
Sbjct: 242 MTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSY----WDALSTR 285
>gb|AAF61852.1|AF176650_2 (AF176650) sulfhydrogenase II subunit g [Pyrococcus furiosus]
Length = 288
Score = 72.6 bits (175), Expect = 5e-12
Identities = 73/258 (28%), Positives = 112/258 (43%), Gaps = 42/258 (16%)
Query: 29 KPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGP 88
KPGQFVI+ + GE P+++ + I + + VG+ TK + EGD I I GP
Sbjct: 40 KPGQFVIVDIRGFGE-FPISLCS-SPTRRPIQLCIRRVGRMTKFIHKMNEGDII-GIRGP 96
Query: 89 LGN--PSHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWEDKLR 146
GN P + + ++++ GG+G+A + V + G Y L + TK +ED L
Sbjct: 97 YGNGFPMDLMEGSNLILIAGGLGMAPLRSVLWYAIDSGKYEKIYLFYGTKS---YEDILF 153
Query: 147 KVSDEVI------------------VTTNDGSYGMKGFTTHALQKLIDE---GRKIDLVH 185
+ DE+I V T Y +GF+ + ++ + G + D+ +
Sbjct: 154 R--DEIIHLLKHGEKLNCHVKLAYEVETPSCIYLERGFSEKVCKGVVTDLFRGEEFDVEN 211
Query: 186 AV----GPAIMMKAVAELTKPYGI---KTVASLNPIMVDGTGMCGACRVTVGGEIKFACV 238
+ GP +M K V G+ + +L M G G CG C V IK+ C
Sbjct: 212 SYALICGPPVMYKYVIRELLDRGLSPGRIYMTLERRMRCGVGKCGHCIVGTSVSIKYICK 271
Query: 239 DGPEFDAHLVDWDELMKR 256
DGP F WD L R
Sbjct: 272 DGPVF----TYWDALSTR 285
>sp|P26475|ASRB_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT B >gi|96706|pir||B38453
anaerobic sulfite reduction protein B - Salmonella
typhimurium >gi|153883|gb|AAA99276.1| (M57706) anaerobic
sulfite reductase [Salmonella typhimurium]
Length = 272
Score = 71.4 bits (172), Expect = 1e-11
Identities = 65/227 (28%), Positives = 109/227 (47%), Gaps = 21/227 (9%)
Query: 31 GQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGPLG 90
GQFV + L GE P++++D+ G I ++ + VGK T L T +EGD + + G G
Sbjct: 45 GQFVEVSLPRVGEA-PISVSDYG--DGWIDLLIRNVGKVTSALFTLKEGDNVW-LRGCYG 100
Query: 91 NPSHVD--KFGTVVMVGGGVGVAEIYPVARAMKEKGNYV---ISILGFRTKDLVFWEDKL 145
N VD + +++V GG GVA + + R E + ILG++ +D V +++++
Sbjct: 101 NGYPVDTLRHKPLLVVAGGTGVAPVKGLMRYFVENPQEIGQLDMILGYKNRDCVLYKEEM 160
Query: 146 R--KVSDEVIVTTNDGSYGMKGFTTHALQKLIDEG-RKIDLVHA--VGPAIMMKAVAELT 200
+ +++T ++G + +L D ID + A VGP IM+ ++
Sbjct: 161 ATWRGKHNLVLTLDEGEADDRYQIGRVTDRLADMTLSDIDTMQAIVVGPPIMITFTVKML 220
Query: 201 KPYGIKTV---ASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFD 244
G+K M G CG CR+ GE+ + C DGP F+
Sbjct: 221 LQKGLKPEQIWVDYERRMACSVGKCGHCRM---GEV-YVCTDGPIFN 263
>emb|CAA53035.1| (X75255) hydrogenase (gamma subunit) [Pyrococcus furiosus]
Length = 291
Score = 69.5 bits (167), Expect = 4e-11
Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 16 LFEVEAPRIAKH--AKPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKEL 73
LF E P +A+ KPGQFV + + GE +P++I KG + ++ G+ T +
Sbjct: 35 LFRFEDPELAEKWTFKPGQFVQLTIPGVGE-VPISICSSPMRKGFFELCIRKAGRVTTVV 93
Query: 74 GTYEEGDYIHDILGPLGNPSHVDKFG--TVVMVGGGVGVAEIYPV-ARAMKEK---GNYV 127
+ GD + + GP GN VD++ ++++ G+G A + V AM + GN
Sbjct: 94 HRLKPGDTVL-VRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNIT 152
Query: 128 ISILGFRTKDLVFWED-----KLRKVSDEVIV--TTNDGSY-GMKGFTTHALQKLIDEGR 179
KDL+F+++ L + + I+ T D ++ G+KG + + +
Sbjct: 153 FINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTRDPNWPGLKGRPQQFIVEA-NTNP 211
Query: 180 KIDLVHAVGPAIMMKAVAELTKPYGIKT---VASLNPIMVDGTGMCGACRVTVGGEIKFA 236
K V GP M K+V E YG + +L M G G CG C V K+
Sbjct: 212 KNTAVAICGPPRMYKSVFEALINYGYRPENIFVTLERRMKCGIGKCGHCNVGTSTSWKYI 271
Query: 237 CVDGPEF 243
C DGP F
Sbjct: 272 CKDGPVF 278
>pir||S48834 cytochrome-c3 hydrogenase (EC 1.12.2.1) gamma chain - Pyrococcus
furiosus
Length = 292
Score = 69.5 bits (167), Expect = 4e-11
Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 16 LFEVEAPRIAKH--AKPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKEL 73
LF E P +A+ KPGQFV + + GE +P++I KG + ++ G+ T +
Sbjct: 36 LFRFEDPELAEKWTFKPGQFVQLTIPGVGE-VPISICSSPMRKGFFELCIRKAGRVTTVV 94
Query: 74 GTYEEGDYIHDILGPLGNPSHVDKFG--TVVMVGGGVGVAEIYPV-ARAMKEK---GNYV 127
+ GD + + GP GN VD++ ++++ G+G A + V AM + GN
Sbjct: 95 HRLKPGDTVL-VRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNIT 153
Query: 128 ISILGFRTKDLVFWED-----KLRKVSDEVIV--TTNDGSY-GMKGFTTHALQKLIDEGR 179
KDL+F+++ L + + I+ T D ++ G+KG + + +
Sbjct: 154 FINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTRDPNWPGLKGRPQQFIVEA-NTNP 212
Query: 180 KIDLVHAVGPAIMMKAVAELTKPYGIKT---VASLNPIMVDGTGMCGACRVTVGGEIKFA 236
K V GP M K+V E YG + +L M G G CG C V K+
Sbjct: 213 KNTAVAICGPPRMYKSVFEALINYGYRPENIFVTLERRMKCGIGKCGHCNVGTSTSWKYI 272
Query: 237 CVDGPEF 243
C DGP F
Sbjct: 273 CKDGPVF 279
>pir||H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyrococcus
horikoshii >gi|3257711|dbj|BAA30394.1| (AP000005) 292aa
long hypothetical cytochrome-c3 hydrogenase gamma chain
[Pyrococcus horikoshii]
Length = 292
Score = 69.5 bits (167), Expect = 4e-11
Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 24/261 (9%)
Query: 1 MFKILHKERLAPGINLFEVEAPRIAKH--AKPGQFVIIRLHERGERIPLTIADFDRDKGS 58
++ + KE+L LF E P++A+ KPGQFV + + GE +P++I +G
Sbjct: 25 VYDLTEKEKLF----LFRFEDPKLAETWTFKPGQFVQLTIPGVGE-VPISICSSPMRRGF 79
Query: 59 ITIVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFG--TVVMVGGGVGVAEIYPV 116
+ + G+ T + + GD + + GP GN VD++ ++++ G+G A + V
Sbjct: 80 FELCIRRAGRVTTVVHRLKPGDIVL-VRGPYGNGFPVDEWEGMDLLLIAAGLGAAPLRSV 138
Query: 117 -ARAMKEK---GNYVISILGFRTKDLVFWED-----KLRKVSDEVIVTTNDGSYGMKGFT 167
AM + GN KDL+F+++ L + + I+ + G
Sbjct: 139 FLYAMDNRWKYGNITFINTARYGKDLLFYKELEAIKDLAEAENVKIIQSVTRDPNWPGLH 198
Query: 168 THALQKLIDEGR--KIDLVHAVGPAIMMKAVAELTKPYGIKT---VASLNPIMVDGTGMC 222
Q +++ K V GP M K+V E YG + +L M G G C
Sbjct: 199 GRPQQFIVEANTNPKNTAVAICGPPRMYKSVFEALINYGYRPENIYVTLERKMKCGIGKC 258
Query: 223 GACRVTVGGEIKFACVDGPEF 243
G C V +K+ C DGP F
Sbjct: 259 GHCVVGTSTSLKYICKDGPVF 279
>gb|AAB94934.1| (AF039208) NiFe hydrogenase gamma subunit [Thermococcus litoralis]
Length = 296
Score = 68.7 bits (165), Expect = 7e-11
Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 24/248 (9%)
Query: 16 LFEVEAPRIAKH--AKPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKEL 73
LF E P IA++ KPGQFV + + GE +P+++ +G + ++ G+ T +
Sbjct: 40 LFRFEDPTIAENWTFKPGQFVQLTIPGIGE-VPISVCSSPMRQGFFELCIRKAGRVTTVV 98
Query: 74 GTYEEGDYIHDILGPLGNPSHVDKFG--TVVMVGGGVGVAEIYPV-ARAMKEK---GNYV 127
+ GD + + GP GN VD++ ++++ G+G A + V AM + GN
Sbjct: 99 HKLKPGDTVL-VRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNIT 157
Query: 128 ISILGFRTKDLVFWEDKLRKVSD-------EVI--VTTNDGSYGMKGFTTHALQKLIDEG 178
KDL+F+++ L + D ++I VT + G+KG + + + +
Sbjct: 158 FINTARYGKDLLFYKE-LEAMKDIAEAENVKIIQSVTRDPDWPGLKGRPQNFIVEA-NTN 215
Query: 179 RKIDLVHAVGPAIMMKAVAELTKPYGIKT---VASLNPIMVDGTGMCGACRVTVGGEIKF 235
K V GP M K V E YG + +L +M G G CG C V K+
Sbjct: 216 PKNTAVAICGPPRMYKDVFESLINYGYRPENIYVTLERMMKCGIGKCGHCNVGTSTSWKY 275
Query: 236 ACVDGPEF 243
C DGP F
Sbjct: 276 VCKDGPVF 283
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109603077
Number of Sequences: 2977
Number of extensions: 4785128
Number of successful extensions: 11322
Number of sequences better than 1.0e-10: 27
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 11262
Number of HSP's gapped (non-prelim): 27
length of query: 278
length of database: 189,106,746
effective HSP length: 53
effective length of query: 225
effective length of database: 157,386,935
effective search space: 35412060375
effective search space used: 35412060375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)