BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1737 (hydG-like) DE:hydrogenase, subunit gamma related
protein
         (278 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75069 hydrogenase, chain gamma related protein PAB1737 - P...   568  e-161
sp|Q9X1X4|PYRK_THEMA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT...   306  2e-82
pir||E71288 probable hydrogenase, gamma chain (hydG) - syphilis ...   279  4e-74
pir||E71200 hypothetical protein PH1874 - Pyrococcus horikoshii ...   243  2e-63
pir||C75024 hydrogenase, gamma chain (hydg). PAB1213 - Pyrococcu...   241  6e-63
pir||F71076 hypothetical protein PH0878 - Pyrococcus horikoshii ...   230  2e-59
pir||G70479 hypothetical protein aq_2098 - Aquifex aeolicus >gi|...   162  4e-39
gb|AAB93308.1| (L04500) unknown [Eubacterium acidaminophilum]         153  3e-36
dbj|BAB06254.1| (AP001515) dihydroorotate dehydrogenase (electro...   127  1e-28
sp|P46536|PYRK_BACCL DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS...   118  7e-26
sp|P25983|PYRK_BACSU DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS...   115  6e-25
sp|Q58841|PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT...   115  8e-25
sp|O57738|PYRK_PYRHO PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT...   108  8e-23
sp|Q9UXV5|PYRK_PYRAB PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT...   101  1e-20
pir||E71212 hypothetical protein PH1965 - Pyrococcus horikoshii ...   100  2e-20
gi|11498139 cytochrome-c3 hydrogenase, subunit gamma [Archaeoglo...    95  8e-19
sp|O67329|PYRK_AQUAE PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT...    85  1e-15
sp|O27280|PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT...    83  3e-15
sp|P56968|PYRK_LACLC DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS...    83  3e-15
emb|CAC11546.1| (AL445064) nife hydrogenase gamma subunit relate...    80  2e-14
pir||H75069 cytochrome-c3 hydrogenase, chain gamma PAB0639 - Pyr...    79  5e-14
gb|AAF61852.1|AF176650_2 (AF176650) sulfhydrogenase II subunit g...    73  5e-12
sp|P26475|ASRB_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT B >gi|9...    71  1e-11
emb|CAA53035.1| (X75255) hydrogenase (gamma subunit) [Pyrococcus...    69  4e-11
pir||S48834 cytochrome-c3 hydrogenase (EC 1.12.2.1) gamma chain ...    69  4e-11
pir||H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyr...    69  4e-11
gb|AAB94934.1| (AF039208) NiFe hydrogenase gamma subunit [Thermo...    69  7e-11

>pir||F75069 hydrogenase, chain gamma related protein PAB1737 - Pyrococcus
           abyssi (strain Orsay) >gi|5458371|emb|CAB49859.1|
           (AJ248286) hydrogenase, subunit gamma related protein
           [Pyrococcus abyssi]
           Length = 278
           
 Score =  568 bits (1449), Expect = e-161
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60
           MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT
Sbjct: 1   MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60

Query: 61  IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAM 120
           IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAM
Sbjct: 61  IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAM 120

Query: 121 KEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRK 180
           KEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRK
Sbjct: 121 KEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRK 180

Query: 181 IDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDG 240
           IDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDG
Sbjct: 181 IDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDG 240

Query: 241 PEFDAHLVDWDELMKRLSYYRDLERISLEKWERERGMV 278
           PEFDAHLVDWDELMKRLSYYRDLERISLEKWERERGMV
Sbjct: 241 PEFDAHLVDWDELMKRLSYYRDLERISLEKWERERGMV 278


>sp|Q9X1X4|PYRK_THEMA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
           >gi|7451851|pir||G72230 hypothetical protein TM1639 -
           Thermotoga maritima (strain MSB8)
           >gi|4982212|gb|AAD36706.1|AE001806_16 (AE001806)
           electron transfer protein, putative [Thermotoga
           maritima]
           Length = 282
           
 Score =  306 bits (775), Expect = 2e-82
 Identities = 147/274 (53%), Positives = 201/274 (72%), Gaps = 2/274 (0%)

Query: 3   KILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSITIV 62
           +I+ K ++A  +  F + +P ++K A+PGQFV+IRLHE+GERIPLT+AD   ++G   +V
Sbjct: 8   EIVKKVKIAEDVFDFWIHSPSVSKEARPGQFVVIRLHEKGERIPLTVADTKPEEGLFRMV 67

Query: 63  AQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAMKE 122
            + VGKTT EL   +EGD I D++GPLGNPS ++ +G V++VGGGVG+A +YP+A+A+KE
Sbjct: 68  VKVVGKTTHELSLKKEGDTILDVVGPLGNPSEIENYGNVLLVGGGVGIATLYPIAKALKE 127

Query: 123 KGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKID 182
            GN + ++LG RTKD +   D+ +++SD V++ T+DGS GMKG  T A+ KL  E RK D
Sbjct: 128 AGNNITTVLGARTKDYLIMVDEFKEISD-VLLVTDDGSAGMKGVVTDAMDKLFRE-RKFD 185

Query: 183 LVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPE 242
           +  AVGP IMMK      + +G+    SLNPIMVDGTGMCGACRVTV G+IKFACVDGPE
Sbjct: 186 ICWAVGPTIMMKFCTLKAREFGVPIWVSLNPIMVDGTGMCGACRVTVSGQIKFACVDGPE 245

Query: 243 FDAHLVDWDELMKRLSYYRDLERISLEKWERERG 276
           F    VDWDEL+KRL+ YR+ E+IS E++ +  G
Sbjct: 246 FRGEEVDWDELLKRLAQYREQEKISYERFLKTAG 279


>pir||E71288 probable hydrogenase, gamma chain (hydG) - syphilis spirochete
           >gi|3323041|gb|AAC65704.1| (AE001245) hydrogenase, gamma
           chain (hydG) [Treponema pallidum]
           Length = 280
           
 Score =  279 bits (705), Expect = 4e-74
 Identities = 138/265 (52%), Positives = 183/265 (68%), Gaps = 1/265 (0%)

Query: 1   MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLH-ERGERIPLTIADFDRDKGSI 59
           MF IL K++ +P +   +V AP IAK+   GQFV+++L  E  ERIPLTIAD   D+G I
Sbjct: 1   MFSILEKKQFSPQVFYLKVHAPDIAKNRAAGQFVLVQLDDEYAERIPLTIADAHADEGWI 60

Query: 60  TIVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARA 119
            +V Q VG TT  L   E GD I  +LGPLGNP+ ++  GTV  V GGVG A +YP+A+A
Sbjct: 61  ALVIQTVGATTMRLCEKEVGDSISVVLGPLGNPTLIENVGTVACVAGGVGAAPLYPIAQA 120

Query: 120 MKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGR 179
            K  GN+VI ILG R +DL+ +E+++R ++DE+++ T+DGSYG KG  T  L++L     
Sbjct: 121 HKRAGNHVIVILGARNRDLIIFEEEMRALADELVIVTDDGSYGRKGLVTEPLRELCXRAS 180

Query: 180 KIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVD 239
               V A+GP IMMK  AE T+P+GI+TV SLN IM+DGTGMCG CRV VG EIKF CVD
Sbjct: 181 CPQEVVAIGPPIMMKFCAETTRPFGIRTVVSLNTIMIDGTGMCGGCRVNVGSEIKFVCVD 240

Query: 240 GPEFDAHLVDWDELMKRLSYYRDLE 264
           GPEFD H VD++ +M+R+  ++  E
Sbjct: 241 GPEFDGHQVDFESMMRRMRAFQARE 265


>pir||E71200 hypothetical protein PH1874 - Pyrococcus horikoshii
           >gi|3258313|dbj|BAA30996.1| (AP000007) 298aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 298
           
 Score =  243 bits (614), Expect = 2e-63
 Identities = 131/284 (46%), Positives = 183/284 (64%), Gaps = 12/284 (4%)

Query: 1   MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60
           M+KIL K+ +A     +++ AP +AK  +PGQFVI+R    GERIPLT   +DR++G I 
Sbjct: 10  MYKILEKKEIAMRNTWYKIYAPHVAKKVQPGQFVIVRAFPNGERIPLTPIMWDREEGWIV 69

Query: 61  IVAQEVGKTTKELGT-YEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARA 119
           +VA   GKTT ++    +EGD I ++ GPLGNP+ ++KFG ++ +G  VG+AE+YP+A+A
Sbjct: 70  LVAFTKGKTTMKMAMELKEGDEILNVAGPLGNPAPMEKFGKILAIGAYVGIAEVYPIAKA 129

Query: 120 MKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIV---------TTNDGSYGMKGFTTHA 170
            +E GN V + L    + +V  +D   K     IV         +  + +  +    T  
Sbjct: 130 WQEIGNDVTT-LHVTFEPMVILKDYFEKAVSRHIVEPVKIDQEKSFQENTKNVTKALTAK 188

Query: 171 LQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVG 230
           +++L+D     DLV  VGP    KAV E+ K YGI     L+PIMVDGTGMCGACRVTVG
Sbjct: 189 VKELLDN-ENWDLVFMVGPPGDQKAVFEVVKKYGIPMKVDLHPIMVDGTGMCGACRVTVG 247

Query: 231 GEIKFACVDGPEFDAHLVDWDELMKRLSYYRDLERISLEKWERE 274
           GE+KFACVDGPEFDA+LVDWDEL+ R+ +Y  LE+++LEK+  E
Sbjct: 248 GEVKFACVDGPEFDAYLVDWDELIHRVGFYSKLEKLALEKYMEE 291


>pir||C75024 hydrogenase, gamma chain (hydg). PAB1213 - Pyrococcus abyssi
           (strain Orsay) >gi|5459147|emb|CAB50633.1| (AJ248288)
           HYDROGENASE, GAMMA CHAIN (HYDG). [Pyrococcus abyssi]
           Length = 292
           
 Score =  241 bits (609), Expect = 6e-63
 Identities = 133/283 (46%), Positives = 180/283 (62%), Gaps = 10/283 (3%)

Query: 1   MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60
           ++KIL K  +A     ++V+AP +AK  +PGQFVI+R  + GERIPLT   +DRD+G I 
Sbjct: 4   VYKILEKREIAMRNTWYKVQAPHVAKKVQPGQFVIVRAFQNGERIPLTPVMWDRDEGWIV 63

Query: 61  IVAQEVGKTTKELGT-YEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARA 119
           ++A   GKTT  + T  +EGDYI ++ GPLGNP+ ++KFG V+ +G   G+ E+YP+A+A
Sbjct: 64  LIAFTRGKTTMRMATELKEGDYILNVAGPLGNPAPMEKFGKVLAIGAYTGIVEVYPIAKA 123

Query: 120 MKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTT----NDGSY--GMKGFTTHALQK 173
            +E GN V + L    + +V  ++   K     IV       D S+   MK  T     K
Sbjct: 124 WQEIGNDVTT-LHVTLEPMVMLKEYFEKAVSRHIVEPVKFDPDKSFPENMKNVTKALTGK 182

Query: 174 LID--EGRKIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGG 231
           + +  E    DLV  VGP    KAV  + K +GI     L+PIMVDGTGMCGACRVTVGG
Sbjct: 183 VRELLETEDWDLVFMVGPPGDQKAVFNVVKEFGIPMRVDLHPIMVDGTGMCGACRVTVGG 242

Query: 232 EIKFACVDGPEFDAHLVDWDELMKRLSYYRDLERISLEKWERE 274
           EIKFACVDGPEFDA+ VDWDEL+ R+ +Y  LE+++LEK+  E
Sbjct: 243 EIKFACVDGPEFDAYQVDWDELIHRVGFYSKLEKLALEKYMEE 285


>pir||F71076 hypothetical protein PH0878 - Pyrococcus horikoshii
           >gi|3257289|dbj|BAA29972.1| (AP000004) 285aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 285
           
 Score =  230 bits (580), Expect = 2e-59
 Identities = 126/283 (44%), Positives = 184/283 (64%), Gaps = 9/283 (3%)

Query: 2   FKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSITI 61
           +KI  K  L+P     EVEAP IAK  KPGQFVI  LHERGER+P+++  +  + G I +
Sbjct: 6   YKITDKRDLSPIDFFVEVEAPHIAKAWKPGQFVIFILHERGERVPMSV--YKAENGRIGM 63

Query: 62  VAQEVGKTTKELG-TYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGV-GVAEIYPVARA 119
             +++GKT+ +L   +  GD  + ++GPLG P  V  +G VV     V G AE Y   +A
Sbjct: 64  FIRKLGKTSLQLYYEFNVGDEFYSMVGPLGKPIKVKYYGNVVFASDAVCGQAENYATLKA 123

Query: 120 MKEKGNYVISILGFRTKDLVFWEDKLRK-VSDEVIVTTNDGSYGMKGFTTHALQKLIDEG 178
           MKE GNY ISI  F   + V+ E+ L K V+DE  +TT DGS G+KG     +++LI++ 
Sbjct: 124 MKEVGNYTISIQTFENAENVYPEEFLAKPVADEHYLTTEDGSVGIKGHYLDIVKELIEKD 183

Query: 179 RKIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACV 238
            K+D++ A G    +  +AELT+PYGI T A++  IMVDGTGMCG+CR+   GE+KFAC 
Sbjct: 184 -KVDIIFAGGKLGSLAKLAELTRPYGIPTYATVRQIMVDGTGMCGSCRILYDGEVKFACR 242

Query: 239 DGPEFDAHLVDWDELMKRLSYYRDLERISLEK---WERERGMV 278
           DGP FDAH VDW+++++R + + + ER++ E+   + R++G++
Sbjct: 243 DGPVFDAHKVDWEDVLRRANRFLEQERLAKERYLEYLRKKGVI 285


>pir||G70479 hypothetical protein aq_2098 - Aquifex aeolicus
           >gi|2984312|gb|AAC07835.1| (AE000772) putative protein
           [Aquifex aeolicus]
           Length = 279
           
 Score =  162 bits (406), Expect = 4e-39
 Identities = 93/274 (33%), Positives = 153/274 (54%), Gaps = 4/274 (1%)

Query: 1   MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60
           M+K+L KERL P   L EV+  R AK  KPGQ+ +++ +E  E IPL+  D    + S T
Sbjct: 1   MYKVLRKERLTPKAVLLEVQDER-AKLVKPGQYALVQANEESEPIPLSFLDVK--ESSYT 57

Query: 61  IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAM 120
            + +  G+ T E+    E + I  I  P G+P  V  +G V+++    GVA +  + RA+
Sbjct: 58  FLVEVGGRATLEIAELVE-EKIQFIEAPCGSPFPVKNYGKVLLISKNWGVAPLINIGRAL 116

Query: 121 KEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRK 180
           KE+ N +  +     ++ VF   +  ++S+E ++ T DGS G +G +  AL   I+   K
Sbjct: 117 KEESNEIYFVHVAEDEERVFLTKEASEISEEFLLFTEDGSLGEEGNSEWALGYFIENFGK 176

Query: 181 IDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDG 240
            DL+ + G  +  + +    +   I  +A +N  ++D  G+C ACRV V G+ K AC+DG
Sbjct: 177 PDLIVSAGSNLDSQMINRFAEERNIPHIAMVNAHILDANGLCLACRVLVEGQEKLACIDG 236

Query: 241 PEFDAHLVDWDELMKRLSYYRDLERISLEKWERE 274
           P FDA  VDWD  +++ ++Y++ E  +L+ + RE
Sbjct: 237 PWFDASKVDWDYAIQKEAFYKEEEEKALKTFLRE 270


>gb|AAB93308.1| (L04500) unknown [Eubacterium acidaminophilum]
           Length = 168
           
 Score =  153 bits (382), Expect = 3e-36
 Identities = 76/167 (45%), Positives = 111/167 (65%), Gaps = 7/167 (4%)

Query: 1   MFKILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSIT 60
           MFKI+ K+ LAP I L +++APR+AK AKPGQFVIIR+ E+GERIPLTI D+D++ G++T
Sbjct: 1   MFKIVEKKVLAPSIFLMKIDAPRVAKSAKPGQFVIIRMDEKGERIPLTICDYDKEAGTVT 60

Query: 61  IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSH-----VD--KFGTVVMVGGGVGVAEI 113
           IV Q +G +T+ +  + EGDY  D +GPLG  S      +D  K   ++ V GGVG A +
Sbjct: 61  IVVQSMGCSTRRMAEFNEGDYFSDFVGPLGRESEFVHESIDALKNKKILFVAGGVGTAPV 120

Query: 114 YPVARAMKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGS 160
           YP  + + E G     I+G + K+++  E++L+ VS  +   T+DGS
Sbjct: 121 YPQVKWLHENGIDADVIIGAKNKEMMIMEEELKSVSKNLYPATDDGS 167


>dbj|BAB06254.1| (AP001515) dihydroorotate dehydrogenase (electron transfer subunit)
           [Bacillus halodurans]
           Length = 259
           
 Score =  127 bits (316), Expect = 1e-28
 Identities = 82/251 (32%), Positives = 133/251 (52%), Gaps = 18/251 (7%)

Query: 4   ILHKERLAPGINLFEVEAPRIAKHAKPGQFVIIRLHERGE---RIPLTIADFDRDKGSIT 60
           I   +R+A GI   +V   R+ +   PGQFV +++ +  E   R PL+I   D     +T
Sbjct: 9   ITSHQRIADGIYEMKVTGERVKEMTSPGQFVHVKVDDGSELLLRRPLSICHVDEQTSELT 68

Query: 61  IVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFG---TVVMVGGGVGVAEIYPVA 117
           ++ +  G+ TK L     G+ + DILGPLG    ++      T +++GGG+GV  +Y +A
Sbjct: 69  LLYRAEGQGTKRLAQKARGETV-DILGPLGQGFPLEAIASGETALLIGGGIGVPPLYYLA 127

Query: 118 RAMKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDE 177
           + +K KG +VI++LGF++    F+ ++  ++    + T  DG+ G KGF TH L +   E
Sbjct: 128 KRLKAKGCHVINVLGFQSAKDSFYYEQFSQLGTTYVATV-DGTAGTKGFVTHVLNQ---E 183

Query: 178 GRKIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCGACRVTVGGE----- 232
               ++V++ GP  M+KAV+E  +  G +   S+   M  G G C AC   V G+     
Sbjct: 184 ALSYNVVYSCGPTPMLKAVSE--RFIGERAFISMEERMGCGIGACFACVCHVTGDEAGTA 241

Query: 233 IKFACVDGPEF 243
            +  C DGP F
Sbjct: 242 YRKICTDGPVF 252


>sp|P46536|PYRK_BACCL DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
           >gi|2126771|pir||I40170 hypothetical protein 2 -
           Bacillus caldolyticus >gi|312444|emb|CAA51740.1|
           (X73308) ORF2 [Bacillus caldolyticus]
           Length = 257
           
 Score =  118 bits (293), Expect = 7e-26
 Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 20/228 (8%)

Query: 29  KPGQFVIIRLHERGE---RIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDI 85
           +PGQFV +++    +   R PL++   D  +G  TI+ ++ GK T  L   + GD + D+
Sbjct: 34  QPGQFVHVKVAASADPLLRRPLSLCHIDHKQGQCTIIYRQEGKGTALLAQKQPGDTV-DV 92

Query: 86  LGPLGN--PSHVDKFGT-VVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWE 142
           LGPLGN  P      G+  ++VGGG+GV  +Y +A+ + ++G  V+S+LGF+TK  VF+E
Sbjct: 93  LGPLGNGFPLEAAPAGSRALLVGGGIGVPPLYELAKQLTKRGVKVVSVLGFQTKAAVFYE 152

Query: 143 DKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAEL--T 200
           ++      E  V T+DGS+G  G  T  ++       + D+++A GP  M++A+AE    
Sbjct: 153 EEFAAFG-ETHVATDDGSHGTAGRVTDVIEA---RSLEFDVLYACGPKPMLRALAERFPN 208

Query: 201 KPYGIKTVASLNPIMVDGTGMCGACRVTVGGE---IKFACVDGPEFDA 245
           +P       SL   M  G G C AC   V G     K  C DGP F A
Sbjct: 209 RP----VYLSLEERMGCGVGACFACVCHVPGSETAYKKVCSDGPVFRA 252


>sp|P25983|PYRK_BACSU DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
           >gi|98369|pir||G39845 dihydroorotate dehydrogenase
           (electron transfer subunit) pyrDII - Bacillus subtilis
           >gi|143391|gb|AAA21271.1| (M59757) unknown [Bacillus
           subtilis] >gi|2633926|emb|CAB13427.1| (Z99112)
           dihydroorotate dehydrogenase (electron transfer subunit)
           [Bacillus subtilis]
           Length = 256
           
 Score =  115 bits (285), Expect = 6e-25
 Identities = 82/229 (35%), Positives = 129/229 (55%), Gaps = 18/229 (7%)

Query: 30  PGQFVIIRLHERGE---RIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDIL 86
           PGQF+ +++ E      R P++IAD + +K  +TI+ +  G+ T+ L   ++G+ + D+L
Sbjct: 34  PGQFLHLKVSEAVTPLLRRPISIADVNFEKNEVTIIYRVDGEGTRLLSLKQQGELV-DVL 92

Query: 87  GPLGNPSHVDKFG---TVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWED 143
           GPLGN   V++     T ++VGGGVGV  +  +++ + EKG  VI +LGF++   VF+E+
Sbjct: 93  GPLGNGFPVNEVQPGKTALLVGGGVGVPPLQELSKRLIEKGVNVIHVLGFQSAKDVFYEE 152

Query: 144 KLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPY 203
           + R+  D   V T DGSYG  GF T  +++   +  + D++ + GP  M+KA   L + Y
Sbjct: 153 ECRQYGD-TYVATADGSYGETGFVTDVIKR---KKLEFDILLSCGPTPMLKA---LKQEY 205

Query: 204 GIKTV-ASLNPIMVDGTGMCGACRV-TVGGEIKF--ACVDGPEFDAHLV 248
             K V  S+   M  G G C AC   T   E  +   C+DGP F A  V
Sbjct: 206 AHKEVYLSMEERMGCGIGACFACVCHTNESETSYVKVCLDGPVFKAQEV 254


>sp|Q58841|PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
           >gi|2127836|pir||E64480 cytochrome-c3 hydrogenase gamma
           chain homolog - Methanococcus jannaschii
           >gi|1592091|gb|AAB99455.1| (U67585) cytochrome-c3
           hydrogenase, gamma chain [Methanococcus jannaschii]
           Length = 257
           
 Score =  115 bits (284), Expect = 8e-25
 Identities = 81/238 (34%), Positives = 123/238 (51%), Gaps = 21/238 (8%)

Query: 29  KPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGP 88
           KPGQF ++ L    E+ P   +     K S ++    VG+ TK++   +EGD I  + GP
Sbjct: 31  KPGQFAMLWLPGVDEK-PFGFSS----KNSFSVA--RVGEFTKKMHELKEGDII-GVRGP 82

Query: 89  LGNPSHVDKFGTVVM-VGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWEDKLRK 147
            G  ++ +  G  V+ V GG+G A I        ++G  + +ILG RTK+ + + D+  K
Sbjct: 83  YG--TYFEPIGDKVLAVAGGIGAAPIITAVEEFSKQGIEITTILGARTKEELLFLDRFEK 140

Query: 148 VSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPYGIKT 207
           VS  + + T+DGS+G KGFTT  +++++ E  K DL+   GP IMMK V E+   Y I  
Sbjct: 141 VS-RLEICTDDGSFGFKGFTTEKMKEVLKE-EKFDLIITCGPEIMMKKVVEIANEYNIPV 198

Query: 208 VASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDWDELMKRLSYYRDLER 265
             S+   M  G G+CG C   V  E    C DGP F      W + +K +  +   +R
Sbjct: 199 QVSMERYMKCGIGICGQC--CVDDEGLCVCKDGPVF------WGDKLKFIREFGKYKR 248


>sp|O57738|PYRK_PYRHO PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
           Length = 247
           
 Score =  108 bits (267), Expect = 8e-23
 Identities = 82/216 (37%), Positives = 114/216 (51%), Gaps = 25/216 (11%)

Query: 30  PGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGPL 89
           PGQF+++ L    E+ P ++AD D       IV + VG  T +L T EEGDY+  I GP 
Sbjct: 30  PGQFIMVWLPGVNEK-PFSLADKD------LIVVKRVGPFTSKLFTLEEGDYLW-IRGPY 81

Query: 90  GNPSHVDKFGTVVMVGGGVGVAEIYPVAR--AMKEKGNYVISILGFRTKDLVFWEDKLRK 147
           GN     K G V +V GG+G+  IY +A+   ++EK    + I G R KD +   D +  
Sbjct: 82  GNGFKEVK-GKVALVAGGIGIPPIYALAKHGKLEEK----VLIYGARGKDELALLD-IEN 135

Query: 148 VSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPYGIKT 207
             DE+++TT+DGSYG+KGF T  L K  +E      V+A GP IM+  V E+      +T
Sbjct: 136 YVDEIVITTDDGSYGIKGFPTDVLAKRKEE---FSQVYACGPEIMLAKVLEIMNYE--RT 190

Query: 208 VASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEF 243
             S    M  G G+CG+C +         C DGP F
Sbjct: 191 QISAERYMKCGIGICGSCALGP----YLVCRDGPVF 222


>sp|Q9UXV5|PYRK_PYRAB PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
           >gi|7451842|pir||D75027 dihydroorotate dehydrogenase
           electron transfer chain PAB1150 - Pyrococcus abyssi
           (strain Orsay) >gi|5459172|emb|CAB50658.1| (AJ248288)
           DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
           [Pyrococcus abyssi]
           Length = 247
           
 Score =  101 bits (248), Expect = 1e-20
 Identities = 80/230 (34%), Positives = 119/230 (50%), Gaps = 29/230 (12%)

Query: 30  PGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGPL 89
           PGQF+++ L    E+ P ++AD D       IV ++VG  T +L   EEGDY+  I GP 
Sbjct: 30  PGQFIMLWLPGINEK-PFSLADKD------LIVVKKVGPFTSKLFKLEEGDYVW-IRGPY 81

Query: 90  GNPSHVDKFGTVVMVGGGVGVAEIYPVARA--MKEKGNYVISILGFRTKDLVFWEDKLRK 147
           GN       G V +V GG+G+  IY +A+   ++EK    + I G R+K+ +   D +  
Sbjct: 82  GN-GFKSVEGKVALVAGGIGIPPIYALAKYGNLEEK----VLIYGARSKEELATLD-IEN 135

Query: 148 VSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDL--VHAVGPAIMMKAVAELTKPYGI 205
             DEV++TT+DGS G+KGF T  L +     RK++   V+A GP +M+  V E+      
Sbjct: 136 YVDEVVITTDDGSAGIKGFPTDVLAR-----RKVEFSQVYACGPEVMLAKVLEIMNYE-- 188

Query: 206 KTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDWDELMK 255
           +T  S    M  G G+CG+C +         C DGP F    +   E+ K
Sbjct: 189 RTQISAERYMKCGIGICGSCALGP----YLVCRDGPVFTGEQLKGTEIGK 234


>pir||E71212 hypothetical protein PH1965 - Pyrococcus horikoshii
           >gi|3258409|dbj|BAA31092.1| (AP000007) 213aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 213
           
 Score =  100 bits (247), Expect = 2e-20
 Identities = 76/200 (38%), Positives = 104/200 (52%), Gaps = 24/200 (12%)

Query: 46  PLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFGTVVMVG 105
           P ++AD D       IV + VG  T +L T EEGDY+  I GP GN     K G V +V 
Sbjct: 11  PFSLADKD------LIVVKRVGPFTSKLFTLEEGDYLW-IRGPYGNGFKEVK-GKVALVA 62

Query: 106 GGVGVAEIYPVAR--AMKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGSYGM 163
           GG+G+  IY +A+   ++EK    + I G R KD +   D +    DE+++TT+DGSYG+
Sbjct: 63  GGIGIPPIYALAKHGKLEEK----VLIYGARGKDELALLD-IENYVDEIVITTDDGSYGI 117

Query: 164 KGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPYGIKTVASLNPIMVDGTGMCG 223
           KGF T  L K  +E      V+A GP IM+  V E+      +T  S    M  G G+CG
Sbjct: 118 KGFPTDVLAKRKEE---FSQVYACGPEIMLAKVLEIMNYE--RTQISAERYMKCGIGICG 172

Query: 224 ACRVTVGGEIKFACVDGPEF 243
           +C +         C DGP F
Sbjct: 173 SCALGP----YLVCRDGPVF 188


>gi|11498139 cytochrome-c3 hydrogenase, subunit gamma [Archaeoglobus fulgidus]
           >gi|9297031|sp|O29722|PYRK_ARCFU PROBABLE DIHYDROOROTATE
           DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
           >gi|7451846|pir||H69315 cytochrome-c3 hydrogenase,
           subunit gamma homolog - Archaeoglobus fulgidus
           >gi|2650096|gb|AAB90709.1| (AE001068) cytochrome-c3
           hydrogenase, subunit gamma [Archaeoglobus fulgidus]
           Length = 232
           
 Score = 95.2 bits (233), Expect = 8e-19
 Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 23/230 (10%)

Query: 24  IAKHAKPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIH 83
           I+  + PGQFV++ +    E IPL+++       S+T+ A  VG+TT  L   +EG Y+ 
Sbjct: 23  ISLRSYPGQFVMVYV-PGCEEIPLSLSS----SNSVTVKA--VGETTASLINAKEGQYV- 74

Query: 84  DILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWED 143
            + G  G+     K    ++V GG+G+A +  +   + + G+ V  + G RT   +FW D
Sbjct: 75  GVRGAFGSAFTPSK--RALIVAGGIGIAPMKYLYEYLMKCGSKVSVVYGERTAKNLFWLD 132

Query: 144 KLRKVSDEVIVTTNDGSYGMKGFTTHALQ-KLIDEGRKIDLVHAVGPAIMMKAVAELTKP 202
           K     D + VTT DGS+G+KG    AL+ + +DE  KI   +  G   M++A  +  K 
Sbjct: 133 KF----DRITVTTEDGSFGLKGTVLDALKLEKLDEYEKI---YVCGSEGMLRATYDFLKE 185

Query: 203 YGI--KTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDW 250
                K   SL   M  G G+CG+C +  G  +   C DGP F+A  + W
Sbjct: 186 RDALDKAEFSLERYMRCGIGVCGSCVIENGLRV---CADGPVFNASELPW 232


>sp|O67329|PYRK_AQUAE PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
           >gi|7451841|pir||F70412 dihydroorotate dehydrogenase
           electron transfer subunit - Aquifex aeolicus
           >gi|2983725|gb|AAC07287.1| (AE000733) dihydroorotate
           dehydrogenase electron transfer subunit [Aquifex
           aeolicus]
           Length = 251
           
 Score = 84.7 bits (206), Expect = 1e-15
 Identities = 67/223 (30%), Positives = 105/223 (47%), Gaps = 13/223 (5%)

Query: 23  RIAKHAKPGQFVIIRLHERGE---RIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEG 79
           +I K  +PG F +I+  +  +   R    +AD +  K          GK T  L   + G
Sbjct: 29  KILKQIEPGHFAMIKPSDTYDPMGRRAFAVADIEEHKA--VFYYDVYGKGTYLLSKRKPG 86

Query: 80  DYIHDILGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLV 139
           + +   L PLG      +    +++GGGVG+A +  +A+ +++ G  V    G R+++ +
Sbjct: 87  ERLKTFL-PLGKRLFSYEGDKHLLIGGGVGLAGLTLLAKKLRDMGKKVFIAYGGRSREHL 145

Query: 140 FWEDKLRKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAEL 199
              + L K      + TNDGS G KGF T  L++   +     +VHA GP  M+K + E+
Sbjct: 146 GMVEWLEKEEFPYELFTNDGSAGRKGFVTEILKEFSTDW----VVHACGPKPMLKTIKEM 201

Query: 200 TKPYGIKTVASLNPIMVDGTGMCGACRV-TVGGEIKFACVDGP 241
               G K   SL   M  G G+C  C V T  G+ K  C +GP
Sbjct: 202 KT--GHKVYFSLEERMACGWGVCLGCVVKTRDGKFKRVCYEGP 242


>sp|O27280|PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
           >gi|7451852|pir||H69028 cytochrome-c3 hydrogenase, gamma
           subunit - Methanobacterium thermoautotrophicum (strain
           Delta H) >gi|2622322|gb|AAB85701.1| (AE000889)
           cytochrome-c3 hydrogenase, gamma subunit
           [Methanobacterium thermoautotrophicum]
           Length = 266
           
 Score = 83.5 bits (203), Expect = 3e-15
 Identities = 63/232 (27%), Positives = 107/232 (45%), Gaps = 15/232 (6%)

Query: 26  KHAKPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDI 85
           +  +PGQFV++   +  +  P++++  D  +  I I  + VG+ T  +    EGD +  I
Sbjct: 33  REVRPGQFVMV--WDFRDEKPMSVSLIDPVRSEIGISIRRVGEFTDRVHGLSEGDLL-GI 89

Query: 86  LGPLGNPSHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWEDKL 145
            GP G    +     +++VGGG+G+A +  +A     +G  V +++  RT D + + D+L
Sbjct: 90  RGPYGRGFEL-MGRDILLVGGGIGMAPLAALADEATARGMRVDALVAARTADELLFLDRL 148

Query: 146 RKVSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDLVHAVGPAIMMKAVAELTKPYGI 205
                 +   T+DGS G KGF   A ++L+      D+    GP  MM  V  +     +
Sbjct: 149 EAAGVNISTCTDDGSCGFKGF---AHERLLTLEENHDMAAVCGPEPMMFQVMRILDERDV 205

Query: 206 KTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDWDELMKRL 257
               SL   M    G+CG C +   G     C +GP F      W + + R+
Sbjct: 206 PAQLSLERYMKCAVGICGQCCLDDTG--FRVCAEGPVF------WSQELSRV 249


>sp|P56968|PYRK_LACLC DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
           Length = 262
           
 Score = 83.1 bits (202), Expect = 3e-15
 Identities = 68/245 (27%), Positives = 125/245 (50%), Gaps = 24/245 (9%)

Query: 15  NLFEV--EAPRIAKHAKPGQFVIIRLHERGE--RIPLTIADFDRDKGSITIVAQEVGKTT 70
           N+FE+  +   + +   PGQF+ + +       R P++I+ +D+   + TI+ +   +TT
Sbjct: 19  NIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETT 78

Query: 71  K--ELGTYEEGDYIHDILGPLGNP---SHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGN 125
              +L   E G  + D++GPLGN    + V     ++++GGG+GV  +Y +A+ +++ G 
Sbjct: 79  GTYKLSKLESGAKV-DVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTGC 137

Query: 126 YVISILGFRTKDLVFWEDKLRKVSDEVI-VTTNDGSYGMKGFTTHALQKLIDEGRKIDLV 184
            +  +LGF ++++   E++   + +  + + T+DGSYG KG     + ++  E   +D +
Sbjct: 138 QMTILLGFASENVKILENEFSNLKNVTLKIATDDGSYGTKGHVGMLMNEIDFE---VDAL 194

Query: 185 HAVGPAIMMKAVAELTKPYG--IKTVASLNPIMVDGTGMCGAC----RVTVGGEIKFACV 238
           +  G   M+KAVA   K Y    +   S+   M  G G C AC    +      +K  C 
Sbjct: 195 YTCGAPAMLKAVA---KKYDQLERLYISMESRMACGIGACYACVEHDKEDESHALK-VCE 250

Query: 239 DGPEF 243
           DGP F
Sbjct: 251 DGPVF 255


>emb|CAC11546.1| (AL445064) nife hydrogenase gamma subunit related protein
           [Thermoplasma acidophilum]
           Length = 250
           
 Score = 80.4 bits (195), Expect = 2e-14
 Identities = 66/217 (30%), Positives = 107/217 (48%), Gaps = 22/217 (10%)

Query: 29  KPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGP 88
           KPGQFV++ L   GE IP++++     KG   I  +  GK ++ +   E G   + I GP
Sbjct: 28  KPGQFVMVWLPGLGE-IPMSLSYVGSPKG---ITVKAYGKVSQAMIDMEPGHEFY-IRGP 82

Query: 89  LGNPSHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWEDKLRKV 148
            GN   ++  G  +++GGG G+A + P+A +  +      +++  +TK+ + + D+  + 
Sbjct: 83  YGNGFQIES-GRKLIIGGGSGIASLLPIADSDTD------ALISAKTKEELIFTDRFPE- 134

Query: 149 SDEVIVTTNDGSYGMKGFTTHALQKL-IDEGRKIDLVHAVGPAIMMKAVAELTKPYGIKT 207
              + + T+DGS G  GF    L +L I   RKI   +  GP  M+  V +       + 
Sbjct: 135 -SRLFIATDDGSEGFHGFPHEFLDRLDISVYRKI---YVCGPEPMLYRVMQKLASMNARA 190

Query: 208 VASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFD 244
             SL   M  G G+C +C  +VGG     C  GP FD
Sbjct: 191 EFSLERTMKCGIGICDSC--SVGG--LQVCRQGPVFD 223


>pir||H75069 cytochrome-c3 hydrogenase, chain gamma PAB0639 - Pyrococcus abyssi
           (strain Orsay) >gi|5458373|emb|CAB49861.1| (AJ248286)
           cytochrome-c3 hydrogenase, subunit gamma [Pyrococcus
           abyssi]
           Length = 288
           
 Score = 79.2 bits (192), Expect = 5e-14
 Identities = 80/288 (27%), Positives = 125/288 (42%), Gaps = 46/288 (15%)

Query: 3   KILHKERLAPGINLFEVEA--PRIAKHA--KPGQFVIIRLHERGERIPLTIADFDRDKGS 58
           +I+    L P   LF ++   P + +    KPGQFVI+ +   GE  P+++      K  
Sbjct: 10  RIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGE-FPISLCSSPTRK-P 67

Query: 59  ITIVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKF--GTVVMVGGGVGVAEIYPV 116
           I +  + VG+ T+ +  + EGD I  + GP GN   ++K    T+++V GG+G+A +  V
Sbjct: 68  IQLCIRRVGRLTRLIHKFSEGDVI-GVRGPYGNGFPLEKMEGATLILVAGGLGMAPLRSV 126

Query: 117 ARAMKEKGNYVISILGFRTKDLVFWEDKLRKVSDEVIVTTNDGS---------------- 160
                + G +    L + TK    +ED L +  DE+I     G                 
Sbjct: 127 LWYAIDSGKFEKIYLYYGTKS---YEDILFR--DEIIYLLKHGEKLNCHVKLAYEVETPS 181

Query: 161 --YGMKGFTTHALQKLIDE---GRKIDLVHAV----GPAIMMKAVAELTKPYGI---KTV 208
             Y  KGF+    + L+ +   G   D+ ++     GP +M K V +     G+   +  
Sbjct: 182 CVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPGRIY 241

Query: 209 ASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDWDELMKR 256
            +L   M  G G CG C V     IK+ C DGP F      WD L  R
Sbjct: 242 MTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSY----WDALSTR 285


>gb|AAF61852.1|AF176650_2 (AF176650) sulfhydrogenase II subunit g [Pyrococcus furiosus]
           Length = 288
           
 Score = 72.6 bits (175), Expect = 5e-12
 Identities = 73/258 (28%), Positives = 112/258 (43%), Gaps = 42/258 (16%)

Query: 29  KPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGP 88
           KPGQFVI+ +   GE  P+++      +  I +  + VG+ TK +    EGD I  I GP
Sbjct: 40  KPGQFVIVDIRGFGE-FPISLCS-SPTRRPIQLCIRRVGRMTKFIHKMNEGDII-GIRGP 96

Query: 89  LGN--PSHVDKFGTVVMVGGGVGVAEIYPVARAMKEKGNYVISILGFRTKDLVFWEDKLR 146
            GN  P  + +   ++++ GG+G+A +  V     + G Y    L + TK    +ED L 
Sbjct: 97  YGNGFPMDLMEGSNLILIAGGLGMAPLRSVLWYAIDSGKYEKIYLFYGTKS---YEDILF 153

Query: 147 KVSDEVI------------------VTTNDGSYGMKGFTTHALQKLIDE---GRKIDLVH 185
           +  DE+I                  V T    Y  +GF+    + ++ +   G + D+ +
Sbjct: 154 R--DEIIHLLKHGEKLNCHVKLAYEVETPSCIYLERGFSEKVCKGVVTDLFRGEEFDVEN 211

Query: 186 AV----GPAIMMKAVAELTKPYGI---KTVASLNPIMVDGTGMCGACRVTVGGEIKFACV 238
           +     GP +M K V       G+   +   +L   M  G G CG C V     IK+ C 
Sbjct: 212 SYALICGPPVMYKYVIRELLDRGLSPGRIYMTLERRMRCGVGKCGHCIVGTSVSIKYICK 271

Query: 239 DGPEFDAHLVDWDELMKR 256
           DGP F      WD L  R
Sbjct: 272 DGPVF----TYWDALSTR 285


>sp|P26475|ASRB_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT B >gi|96706|pir||B38453
           anaerobic sulfite reduction protein B - Salmonella
           typhimurium >gi|153883|gb|AAA99276.1| (M57706) anaerobic
           sulfite reductase [Salmonella typhimurium]
           Length = 272
           
 Score = 71.4 bits (172), Expect = 1e-11
 Identities = 65/227 (28%), Positives = 109/227 (47%), Gaps = 21/227 (9%)

Query: 31  GQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGPLG 90
           GQFV + L   GE  P++++D+    G I ++ + VGK T  L T +EGD +  + G  G
Sbjct: 45  GQFVEVSLPRVGEA-PISVSDYG--DGWIDLLIRNVGKVTSALFTLKEGDNVW-LRGCYG 100

Query: 91  NPSHVD--KFGTVVMVGGGVGVAEIYPVARAMKEKGNYV---ISILGFRTKDLVFWEDKL 145
           N   VD  +   +++V GG GVA +  + R   E    +     ILG++ +D V +++++
Sbjct: 101 NGYPVDTLRHKPLLVVAGGTGVAPVKGLMRYFVENPQEIGQLDMILGYKNRDCVLYKEEM 160

Query: 146 R--KVSDEVIVTTNDGSYGMKGFTTHALQKLIDEG-RKIDLVHA--VGPAIMMKAVAELT 200
              +    +++T ++G    +        +L D     ID + A  VGP IM+    ++ 
Sbjct: 161 ATWRGKHNLVLTLDEGEADDRYQIGRVTDRLADMTLSDIDTMQAIVVGPPIMITFTVKML 220

Query: 201 KPYGIKTV---ASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFD 244
              G+K           M    G CG CR+   GE+ + C DGP F+
Sbjct: 221 LQKGLKPEQIWVDYERRMACSVGKCGHCRM---GEV-YVCTDGPIFN 263


>emb|CAA53035.1| (X75255) hydrogenase (gamma subunit) [Pyrococcus furiosus]
           Length = 291
           
 Score = 69.5 bits (167), Expect = 4e-11
 Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 22/247 (8%)

Query: 16  LFEVEAPRIAKH--AKPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKEL 73
           LF  E P +A+    KPGQFV + +   GE +P++I      KG   +  ++ G+ T  +
Sbjct: 35  LFRFEDPELAEKWTFKPGQFVQLTIPGVGE-VPISICSSPMRKGFFELCIRKAGRVTTVV 93

Query: 74  GTYEEGDYIHDILGPLGNPSHVDKFG--TVVMVGGGVGVAEIYPV-ARAMKEK---GNYV 127
              + GD +  + GP GN   VD++    ++++  G+G A +  V   AM  +   GN  
Sbjct: 94  HRLKPGDTVL-VRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNIT 152

Query: 128 ISILGFRTKDLVFWED-----KLRKVSDEVIV--TTNDGSY-GMKGFTTHALQKLIDEGR 179
                   KDL+F+++      L +  +  I+   T D ++ G+KG     + +  +   
Sbjct: 153 FINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTRDPNWPGLKGRPQQFIVEA-NTNP 211

Query: 180 KIDLVHAVGPAIMMKAVAELTKPYGIKT---VASLNPIMVDGTGMCGACRVTVGGEIKFA 236
           K   V   GP  M K+V E    YG +      +L   M  G G CG C V      K+ 
Sbjct: 212 KNTAVAICGPPRMYKSVFEALINYGYRPENIFVTLERRMKCGIGKCGHCNVGTSTSWKYI 271

Query: 237 CVDGPEF 243
           C DGP F
Sbjct: 272 CKDGPVF 278


>pir||S48834 cytochrome-c3 hydrogenase (EC 1.12.2.1) gamma chain - Pyrococcus
           furiosus
           Length = 292
           
 Score = 69.5 bits (167), Expect = 4e-11
 Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 22/247 (8%)

Query: 16  LFEVEAPRIAKH--AKPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKEL 73
           LF  E P +A+    KPGQFV + +   GE +P++I      KG   +  ++ G+ T  +
Sbjct: 36  LFRFEDPELAEKWTFKPGQFVQLTIPGVGE-VPISICSSPMRKGFFELCIRKAGRVTTVV 94

Query: 74  GTYEEGDYIHDILGPLGNPSHVDKFG--TVVMVGGGVGVAEIYPV-ARAMKEK---GNYV 127
              + GD +  + GP GN   VD++    ++++  G+G A +  V   AM  +   GN  
Sbjct: 95  HRLKPGDTVL-VRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNIT 153

Query: 128 ISILGFRTKDLVFWED-----KLRKVSDEVIV--TTNDGSY-GMKGFTTHALQKLIDEGR 179
                   KDL+F+++      L +  +  I+   T D ++ G+KG     + +  +   
Sbjct: 154 FINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTRDPNWPGLKGRPQQFIVEA-NTNP 212

Query: 180 KIDLVHAVGPAIMMKAVAELTKPYGIKT---VASLNPIMVDGTGMCGACRVTVGGEIKFA 236
           K   V   GP  M K+V E    YG +      +L   M  G G CG C V      K+ 
Sbjct: 213 KNTAVAICGPPRMYKSVFEALINYGYRPENIFVTLERRMKCGIGKCGHCNVGTSTSWKYI 272

Query: 237 CVDGPEF 243
           C DGP F
Sbjct: 273 CKDGPVF 279


>pir||H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyrococcus
           horikoshii >gi|3257711|dbj|BAA30394.1| (AP000005) 292aa
           long hypothetical cytochrome-c3 hydrogenase gamma chain
           [Pyrococcus horikoshii]
           Length = 292
           
 Score = 69.5 bits (167), Expect = 4e-11
 Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 24/261 (9%)

Query: 1   MFKILHKERLAPGINLFEVEAPRIAKH--AKPGQFVIIRLHERGERIPLTIADFDRDKGS 58
           ++ +  KE+L     LF  E P++A+    KPGQFV + +   GE +P++I      +G 
Sbjct: 25  VYDLTEKEKLF----LFRFEDPKLAETWTFKPGQFVQLTIPGVGE-VPISICSSPMRRGF 79

Query: 59  ITIVAQEVGKTTKELGTYEEGDYIHDILGPLGNPSHVDKFG--TVVMVGGGVGVAEIYPV 116
             +  +  G+ T  +   + GD +  + GP GN   VD++    ++++  G+G A +  V
Sbjct: 80  FELCIRRAGRVTTVVHRLKPGDIVL-VRGPYGNGFPVDEWEGMDLLLIAAGLGAAPLRSV 138

Query: 117 -ARAMKEK---GNYVISILGFRTKDLVFWED-----KLRKVSDEVIVTTNDGSYGMKGFT 167
              AM  +   GN          KDL+F+++      L +  +  I+ +        G  
Sbjct: 139 FLYAMDNRWKYGNITFINTARYGKDLLFYKELEAIKDLAEAENVKIIQSVTRDPNWPGLH 198

Query: 168 THALQKLIDEGR--KIDLVHAVGPAIMMKAVAELTKPYGIKT---VASLNPIMVDGTGMC 222
               Q +++     K   V   GP  M K+V E    YG +      +L   M  G G C
Sbjct: 199 GRPQQFIVEANTNPKNTAVAICGPPRMYKSVFEALINYGYRPENIYVTLERKMKCGIGKC 258

Query: 223 GACRVTVGGEIKFACVDGPEF 243
           G C V     +K+ C DGP F
Sbjct: 259 GHCVVGTSTSLKYICKDGPVF 279


>gb|AAB94934.1| (AF039208) NiFe hydrogenase gamma subunit [Thermococcus litoralis]
           Length = 296
           
 Score = 68.7 bits (165), Expect = 7e-11
 Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 24/248 (9%)

Query: 16  LFEVEAPRIAKH--AKPGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKEL 73
           LF  E P IA++   KPGQFV + +   GE +P+++      +G   +  ++ G+ T  +
Sbjct: 40  LFRFEDPTIAENWTFKPGQFVQLTIPGIGE-VPISVCSSPMRQGFFELCIRKAGRVTTVV 98

Query: 74  GTYEEGDYIHDILGPLGNPSHVDKFG--TVVMVGGGVGVAEIYPV-ARAMKEK---GNYV 127
              + GD +  + GP GN   VD++    ++++  G+G A +  V   AM  +   GN  
Sbjct: 99  HKLKPGDTVL-VRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNIT 157

Query: 128 ISILGFRTKDLVFWEDKLRKVSD-------EVI--VTTNDGSYGMKGFTTHALQKLIDEG 178
                   KDL+F+++ L  + D       ++I  VT +    G+KG   + + +  +  
Sbjct: 158 FINTARYGKDLLFYKE-LEAMKDIAEAENVKIIQSVTRDPDWPGLKGRPQNFIVEA-NTN 215

Query: 179 RKIDLVHAVGPAIMMKAVAELTKPYGIKT---VASLNPIMVDGTGMCGACRVTVGGEIKF 235
            K   V   GP  M K V E    YG +      +L  +M  G G CG C V      K+
Sbjct: 216 PKNTAVAICGPPRMYKDVFESLINYGYRPENIYVTLERMMKCGIGKCGHCNVGTSTSWKY 275

Query: 236 ACVDGPEF 243
            C DGP F
Sbjct: 276 VCKDGPVF 283


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.141    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109603077
Number of Sequences: 2977
Number of extensions: 4785128
Number of successful extensions: 11322
Number of sequences better than 1.0e-10: 27
Number of HSP's better than  0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 11262
Number of HSP's gapped (non-prelim): 27
length of query: 278
length of database: 189,106,746
effective HSP length: 53
effective length of query: 225
effective length of database: 157,386,935
effective search space: 35412060375
effective search space used: 35412060375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)