BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1738 (gltB-1) DE:GLUTAMATE SYNTHASE SMALL CHAIN
(474 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75069 glutamate synthase small chain PAB1738 - Pyrococcus ... 959 0.0
pir||B75024 glutamate synthase small chain. PAB1214 - Pyrococcus... 788 0.0
pir||D71200 probable glutamate synthase small chain - Pyrococcus... 769 0.0
dbj|BAA21091.1| (D86223) glutamate synthase [Pyrococcus sp.] 695 0.0
pir||D71076 probable glutamate synthase small chain - Pyrococcus... 674 0.0
pir||H72230 glutamate synthase, beta subunit - Thermotoga mariti... 541 e-153
pir||A70477 glutamate synthase small subunit gltD - Aquifex aeol... 413 e-114
pir||D71288 probable glutamate synthase (gltA) - syphilis spiroc... 405 e-112
gb|AAB18329.1| (U73807) formate dehydrogenase beta subunit [Moor... 307 1e-82
sp|P37127|AEGA_ECOLI AEGA PROTEIN >gi|7451584|pir||C65022 yffG p... 294 2e-78
dbj|BAA16342.1| (D90875) similar to [SwissProt Accession Number ... 294 2e-78
pir||JC5184 glutamate synthase (GOGAT) (EC 1.4.1.-) small chain ... 289 6e-77
sp|P09832|GLTD_ECOLI GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN (GLU... 284 2e-75
pir||G83017 glutamate synthase small chain PA5035 [imported] - P... 279 4e-74
gb|AAG38999.1|AF192408_3 (AF192408) NADPH-dependent glutamate sy... 275 7e-73
emb|CAC11556.1| (AL445064) GLUTAMATE SYNTHASE [NADPH] SMALL CHAI... 272 6e-72
pir||G82083 glutamate synthase, small subunit VC2377 [imported] ... 270 2e-71
gb|AAD56915.1|AF180145_7 (AF180145) glutamate synthase small sub... 269 6e-71
sp|Q46820|YGFT_ECOLI HYPOTHETICAL 69.1 KD PROTEIN IN KDUI-LYSS I... 268 1e-70
pir||G65072 hypothetical protein b2887 - Escherichia coli (strai... 268 1e-70
sp|Q05756|GLTD_AZOBR GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN (GLU... 266 3e-70
pir||H82523 glutamate synthase, beta subunit XF2709 [imported] -... 264 2e-69
pir||JE0142 glutamate synthase (EC 1.4.1.-) small chain - Rhodob... 254 2e-66
gb|AAB46944.1| (L34011) Fe-S center and glutamate synthase (GltD... 253 3e-66
emb|CAA73084.1| (Y12481) glutamine--pyruvate aminotransferase [R... 253 3e-66
gb|AAD18034.1| (AF119099) glutamate synthase small subunit [Pseu... 248 9e-65
pir||G72281 glutamate synthase, beta subunit - Thermotoga mariti... 241 1e-62
pir||T34868 probable glutamate synthase small chain - Streptomyc... 231 1e-59
pir||B29617 glutamate synthase (NADPH) (EC 1.4.1.13) small chain... 231 2e-59
pir||F65071 hypothetical protein b2878 - Escherichia coli (strai... 229 7e-59
pir||G83590 probable oxidoreductase PA0440 [imported] - Pseudomo... 226 6e-58
pir||B75551 glutamate synthase, small subunit - Deinococcus radi... 220 3e-56
dbj|BAA35120.1| (AB008845) NADH dependent Glutamate Synthase [Or... 219 6e-56
pir||G70655 probable small subunit of NADH-dependent glutamate s... 218 1e-55
dbj|BAA97323.1| (AB020754) NADH-dependent glutamate synthase [Ar... 214 1e-54
sp|Q03460|GLSN_MEDSA GLUTAMATE SYNTHASE [NADH] PRECURSOR (NADH-G... 212 7e-54
gb|AAB41904.1| (L37606) NADH-dependent glutamate synthase [Medic... 210 3e-53
pir||A64983 hypothetical protein b2146 - Escherichia coli (strai... 210 4e-53
dbj|BAB05448.1| (AP001513) glutamate synthase (small subunit) [B... 210 4e-53
gb|AAC17982.1| (AF031406) NADPH dependent glutamate synthase sma... 209 6e-53
sp|Q28007|DPYD_BOVIN DIHYDROPYRIMIDINE DEHYDROGENASE [NADP+] (DP... 207 2e-52
sp|Q28943|DPYD_PIG DIHYDROPYRIMIDINE DEHYDROGENASE [NADP+] PRECU... 204 2e-51
sp|Q18164|DPYD_CAEEL PROBABLE DIHYDROPYRIMIDINE DEHYDROGENASE [N... 203 3e-51
pir||F82085 glutamate synthase, small chain VC2374 [imported] - ... 203 4e-51
pir||H69634 glutamate synthase (small subunit) gltB - Bacillus s... 203 5e-51
gb|AAF49409.1| (AE003526) CG9674 gene product [alt 1] [Drosophil... 202 6e-51
gb|AAF49410.1| (AE003526) CG9674 gene product [alt 3] [Drosophil... 202 6e-51
dbj|BAA33218.1| (D85035) dihydropyrimidine dehydrogenase [Rattus... 201 2e-50
gi|4503373 dihydropyrimidine dehydrogenase [Homo sapiens] >gi|24... 200 2e-50
gb|AAB51366.1| (U20938) No definition line found [Homo sapiens] ... 200 2e-50
dbj|BAA12742.1| (D85230) small subunit of NADH-dependent glutama... 200 2e-50
pir||S74625 NADH-glutamate synthase small chain gltD - Synechocy... 199 7e-50
gb|AAD41676.1|AF082880_2 (AF082880) glutamate synthase small sub... 195 1e-48
pir||T24629 glutamate synthase (NADH) (EC 1.4.1.14) precursor [s... 194 1e-48
gi|6320030 Glutamate synthase (NADPH); Glt1p [Saccharomyces cere... 192 7e-48
sp|Q12680|GLT1_YEAST GLUTAMATE SYNTHASE [NADPH] PRECURSOR (NADPH... 191 2e-47
pir||G72689 probable glutamate synthase small chain APE0935 - Ae... 190 4e-47
pir||T49818 probable glutamate synthase (NADPH) [imported] - Neu... 185 7e-46
gb|AAF46461.2| (AE003446) Reg-3 gene product [Drosophila melanog... 184 2e-45
pir||T28635 glutamate synthase (NADH) (EC 1.4.1.14) - malaria pa... 174 2e-42
dbj|BAA75930.1| (AB024708) glutamine 2-oxoglutarate aminotransfe... 170 3e-41
gb|AAG13082.1| (U84760) DsrL [Allochromatium vinosum] 170 3e-41
pir||D81416 glutamate synthase (NADPH) (EC 1.4.1.13) small chain... 166 5e-40
gi|11421673 dihydropyrimidine dehydrogenase [Homo sapiens] 165 1e-39
dbj|BAA83927.1| (AB024555) GLTB [Bacillus halodurans] 95 2e-18
pir||C75513 probable ferredoxin/ferredoxin--NADP reductase - Dei... 85 2e-15
emb|CAB60604.1| (AL132865) cDNA EST yk60c5.5 comes from this gen... 83 5e-15
emb|CAB60462.1| (AL132856) putative ferredoxin/ferredoxin-NADP r... 79 9e-14
gb|AAG13948.1|AF283287_1 (AF283287) ferrodoxin-NADP(+) reductase... 79 9e-14
gb|AAC97377.1| (AF107264) glutamate synthase small subunit [Rhiz... 76 8e-13
pir||G69759 thioredoxin reductase homolog ycgT - Bacillus subtil... 76 1e-12
sp|O05204|AHPF_STAAU ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi... 75 2e-12
pir||B71556 probable thioredoxin reductase - Chlamydia trachomat... 74 4e-12
pir||T00824 thioredoxin reductase homolog T32G6.20 - Arabidopsis... 72 2e-11
gb|AAB86519.1| (AC002329) putative thioredoxin reductase [Arabid... 71 2e-11
sp|Q9Z8M4|TRXB_CHLPN THIOREDOXIN REDUCTASE (TRXR) >gi|7431887|pi... 71 2e-11
emb|CAB57297.1| (AJ243598) NADH oxidase [Sulfolobus solfataricus] 71 2e-11
gb|AAK42391.1| Thioredoxin reductase (trxB-1) [Sulfolobus solfat... 71 3e-11
gb|AAK42563.1| Thioredoxin reductase (trxB-3) [Sulfolobus solfat... 71 3e-11
emb|CAC01564.1| (AL391039) 2,4-dienoyl-CoA reductase [NADPH] [St... 71 4e-11
pir||A70920 probable adrenodoxin and NADPH ferredoxin reductase ... 70 6e-11
pir||T45314 probable ferredoxin [imported] - Mycobacterium lepra... 70 6e-11
>pir||E75069 glutamate synthase small chain PAB1738 - Pyrococcus abyssi (strain
Orsay) >gi|5458370|emb|CAB49858.1| (AJ248286) GLUTAMATE
SYNTHASE SMALL CHAIN [Pyrococcus abyssi]
Length = 474
Score = 959 bits (2451), Expect = 0.0
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MPKLIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
MPKLIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI
Sbjct: 1 MPKLIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
Query: 61 DIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPV 120
DIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPV
Sbjct: 61 DIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPV 120
Query: 121 NIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
NIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV
Sbjct: 121 NIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
Query: 181 TIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEF 240
TIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEF
Sbjct: 181 TIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEF 240
Query: 241 DAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIG 300
DAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIG
Sbjct: 241 DAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIG 300
Query: 301 AGNTAMDAARSALRLGAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
AGNTAMDAARSALRLGAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE
Sbjct: 301 AGNTAMDAARSALRLGAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
Query: 361 NGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKV 420
NGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKV
Sbjct: 361 NGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKV 420
Query: 421 DEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSSSS 474
DEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSSSS
Sbjct: 421 DEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSSSS 474
>pir||B75024 glutamate synthase small chain. PAB1214 - Pyrococcus abyssi
(strain Orsay) >gi|5459146|emb|CAB50632.1| (AJ248288)
GLUTAMATE SYNTHASE SMALL CHAIN. [Pyrococcus abyssi]
Length = 475
Score = 788 bits (2012), Expect = 0.0
Identities = 389/475 (81%), Positives = 428/475 (89%), Gaps = 1/475 (0%)
Query: 1 MPKLIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
MPKLIKERVPTPERS ER+RDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI
Sbjct: 1 MPKLIKERVPTPERSPVERVRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
Query: 61 DIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPV 120
DIPGFIRALRENRD+P KAVREALK+IW NSLPAITGRVCPQEDQCEGVCVVGKVGDP+
Sbjct: 61 DIPGFIRALRENRDNPRKAVREALKVIWACNSLPAITGRVCPQEDQCEGVCVVGKVGDPI 120
Query: 121 NIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
NIGKLERFVADYAR+HGI+DELL E+IRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV
Sbjct: 121 NIGKLERFVADYAREHGIDDELLMEEIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
Query: 181 TIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEF 240
TIFEALHEPGGVLAYGIPEFRLPKEI++KE++KLK LGV+I+T+ +VG+TVT EL EE+
Sbjct: 181 TIFEALHEPGGVLAYGIPEFRLPKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEY 240
Query: 241 DAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIG 300
DAIFI TGAGTP++ PG+NLNGIYSANEFLTRINLMKAYKFPEYDTPI +GKRV VIG
Sbjct: 241 DAIFISTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIG 300
Query: 301 AGNTAMDAARSALRLGAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
AGNTAMDAARSALRLGAEV I YRR +++MTAR EE++HA+EEGVKFMF V+P FIGDE
Sbjct: 301 AGNTAMDAARSALRLGAEVIIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE 360
Query: 361 NGNLKAIELEKMK-LGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELK 419
G +KA++ EKMK L E D+ G+R+ + TGE +E DT IIAIGQTPNK +T P LK
Sbjct: 361 EGRVKAVKFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLK 420
Query: 420 VDEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSSSS 474
V E G IIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIH+YLS S+
Sbjct: 421 VREDGTIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKSA 475
>pir||D71200 probable glutamate synthase small chain - Pyrococcus horikoshii
>gi|3258312|dbj|BAA30995.1| (AP000007) 476aa long
hypothetical glutamate synthase small chain [Pyrococcus
horikoshii]
Length = 476
Score = 769 bits (1963), Expect = 0.0
Identities = 376/475 (79%), Positives = 424/475 (89%), Gaps = 1/475 (0%)
Query: 1 MPKLIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
MPKLIKERVPTPER VEERI+DF+EVNLGYTWELAL+EAERCLQCP EYAPCIKGCPVNI
Sbjct: 1 MPKLIKERVPTPERPVEERIKDFDEVNLGYTWELALKEAERCLQCPVEYAPCIKGCPVNI 60
Query: 61 DIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPV 120
+IPGFI+ALREN+D+P KAV+EAL++IW NSLPAITGRVCPQEDQCEG CVVGKVGDPV
Sbjct: 61 NIPGFIKALRENKDNPRKAVKEALRVIWACNSLPAITGRVCPQEDQCEGACVVGKVGDPV 120
Query: 121 NIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
NIGKLERFVADYARQHGI+DELL E+I+ IK+NGK+VAVIGAGPAGLTCAAELAKMGY+V
Sbjct: 121 NIGKLERFVADYARQHGIDDELLMEEIKNIKKNGKKVAVIGAGPAGLTCAAELAKMGYDV 180
Query: 181 TIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEF 240
TI+EALHEPGGVLAYGIPEFRLPKEI++KE++KL LGVKI+T+ +VG+TVT EL +E+
Sbjct: 181 TIYEALHEPGGVLAYGIPEFRLPKEILRKELKKLSILGVKIKTDHIVGRTVTIPELLKEY 240
Query: 241 DAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIG 300
DAIFIGTGAGTP++ PG+NLNGIYSANEFLTRINLMKAYKFPEYDTPI +GKRV VIG
Sbjct: 241 DAIFIGTGAGTPKLLKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIIVGKRVIVIG 300
Query: 301 AGNTAMDAARSALRLGAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
AGNTAMDAARSALRLGAEV I YRR ++MTAR EE++HA+EEGVKFMF V+P FIGDE
Sbjct: 301 AGNTAMDAARSALRLGAEVIIAYRRGEEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDE 360
Query: 361 NGNLKAIELEKMK-LGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELK 419
NG +KA++ EKMK L E D G+R+ I TGE +E DT +IAIGQTPN+ +T P LK
Sbjct: 361 NGRVKAVKFEKMKPLEERDSRGKRKIIGTGEYVTVETDTVVIAIGQTPNRIIWKTTPGLK 420
Query: 420 VDEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSSSS 474
V E G I+VDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIH+YLS S
Sbjct: 421 VRENGTIVVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLSKKS 475
>dbj|BAA21091.1| (D86223) glutamate synthase [Pyrococcus sp.]
Length = 481
Score = 695 bits (1774), Expect = 0.0
Identities = 341/470 (72%), Positives = 405/470 (85%), Gaps = 3/470 (0%)
Query: 3 KLIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDI 62
KLIKERVPTPER EERI+DF EVNLGYT+ELA++EAERCLQCP EYAPCIKGCPV+I+I
Sbjct: 5 KLIKERVPTPERPPEERIKDFKEVNLGYTFELAVKEAERCLQCPYEYAPCIKGCPVHINI 64
Query: 63 PGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNI 122
PGFI L E RDDPDKAV+EAL +IW NSLPA TGRVCPQEDQCE CV+GKVGD +NI
Sbjct: 65 PGFISKLVEYRDDPDKAVKEALNVIWACNSLPATTGRVCPQEDQCEMNCVMGKVGDKINI 124
Query: 123 GKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTI 182
GKLERFVADYAR+ GI++ELL E I I++ G++VA+IGAGPAGLT A ELAK+GY+VTI
Sbjct: 125 GKLERFVADYAREKGIDEELLFEIIPKIEKKGQKVAIIGAGPAGLTAAGELAKLGYDVTI 184
Query: 183 FEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDA 242
+EALHEPGGVL YGIPEFRLPKEIV KE+EKL++LGVKI T+ +VG+TVT EEL +E+DA
Sbjct: 185 YEALHEPGGVLMYGIPEFRLPKEIVNKEIEKLRKLGVKILTDHVVGRTVTIEELLQEYDA 244
Query: 243 IFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAG 302
+FIG+GAGTPR+ PG+NLNGIY+ANEFLTR+NLMKAY FPEYDTP+ +GK+V VIGAG
Sbjct: 245 VFIGSGAGTPRLINAPGINLNGIYTANEFLTRVNLMKAYLFPEYDTPVYVGKKVIVIGAG 304
Query: 303 NTAMDAARSALRLGAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENG 362
NTAMDAARSA R GAEV I YRR ++++AREEE++HA+EEG+KF++ V+P FIGDENG
Sbjct: 305 NTAMDAARSARRFGAEVTIAYRRGEEDVSAREEEVEHAKEEGIKFVYFVNPVEFIGDENG 364
Query: 363 NLKAIELEKMK-LGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVD 421
+KA++ EKMK L E D G+R+ + TGE +E DT IIAIG+ PN+ + T P LKV
Sbjct: 365 RVKAVKFEKMKALDERDARGKRKIVGTGEYVTLEADTVIIAIGKHPNRLIINT-PGLKV- 422
Query: 422 EKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLS 471
E+G+I+VDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIH+YL+
Sbjct: 423 ERGKIVVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYLT 472
>pir||D71076 probable glutamate synthase small chain - Pyrococcus horikoshii
>gi|3257287|dbj|BAA29970.1| (AP000004) 472aa long
hypothetical glutamate synthase small chain [Pyrococcus
horikoshii]
Length = 472
Score = 674 bits (1719), Expect = 0.0
Identities = 337/471 (71%), Positives = 391/471 (82%), Gaps = 8/471 (1%)
Query: 1 MPKLIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
MPKLIKERVPTPER VEERI+DF EVNLGYT+ELA +EAERCLQCP EYAPCIKGCPV+I
Sbjct: 1 MPKLIKERVPTPERPVEERIKDFKEVNLGYTFELAKKEAERCLQCPPEYAPCIKGCPVHI 60
Query: 61 DIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPV 120
+IP FI ++E ++ AL+IIW+ N+LPAITGRVCPQEDQCEG CVVGKVGDPV
Sbjct: 61 NIPAFIAKIKEGD------IKGALRIIWNDNTLPAITGRVCPQEDQCEGACVVGKVGDPV 114
Query: 121 NIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
NIGKLERFVADYAR+HGIE+ELL E + +VAV+GAGPAGLTCA ELAKMGY+V
Sbjct: 115 NIGKLERFVADYAREHGIEEELLREFTEKCDGSKGKVAVVGAGPAGLTCAGELAKMGYKV 174
Query: 181 TIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEF 240
TIFEALH+PGGVLAYGIPEFRLPKEI+ E++KLK LGV+I T+ +VGKTVT +EL +E+
Sbjct: 175 TIFEALHKPGGVLAYGIPEFRLPKEILDHELKKLKMLGVEIRTDHVVGKTVTLDELLQEY 234
Query: 241 DAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIG 300
DA+FIGTGAGTP++ PG+ L+ IYSANEFLTRINLMKAY+FPEYDTPI +GK+V VIG
Sbjct: 235 DAVFIGTGAGTPKLLNIPGILLDRIYSANEFLTRINLMKAYEFPEYDTPIAVGKKVIVIG 294
Query: 301 AGNTAMDAARSALRLGAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
AGNTAMDAARSALRLGAEV I YRR R++MTAREEEIKHAEEEGVKF F + P FIGDE
Sbjct: 295 AGNTAMDAARSALRLGAEVTIAYRRGREDMTAREEEIKHAEEEGVKFEFFLQPVEFIGDE 354
Query: 361 NGNLKAIELEKMK-LGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELK 419
NG +KA++ E+ K L E D G+R+ + TGE +E DT IIAIG PNK + LK
Sbjct: 355 NGRVKAVKFERTKPLEERDSKGKRKIVGTGEYVTLEADTVIIAIGLEPNKIITED-GRLK 413
Query: 420 VDEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYL 470
+ G I+VDENLMTSIPGVFAGGDAIRGEATVILAMGDG++AAKAI +Y+
Sbjct: 414 TNPDGTIVVDENLMTSIPGVFAGGDAIRGEATVILAMGDGKRAAKAIDEYI 464
>pir||H72230 glutamate synthase, beta subunit - Thermotoga maritima (strain
MSB8) >gi|4982213|gb|AAD36707.1|AE001806_17 (AE001806)
glutamate synthase, beta subunit [Thermotoga maritima]
Length = 468
Score = 541 bits (1380), Expect = e-153
Identities = 281/470 (59%), Positives = 350/470 (73%), Gaps = 20/470 (4%)
Query: 8 RVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIR 67
+ P E+S E R R+F EV LGYT E AL EA+RCLQCP PC+ GCPV IDIPGFIR
Sbjct: 5 KTPMKEQSPESRRRNFEEVALGYTLEEALEEAQRCLQCPTH--PCVSGCPVEIDIPGFIR 62
Query: 68 ALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD--PVNIGKL 125
LR+ + + E+ +I+ N+LPA+ GRVCPQE QCE CVVGK+ D PV IG+L
Sbjct: 63 KLRDGK------LEESYRILKSYNNLPAVCGRVCPQEVQCESRCVVGKMKDSEPVAIGRL 116
Query: 126 ERFVADYARQHGIEDELLEEQIRGIKRNGK-RVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
ERFVAD+A ++ LEE ++ + + K +VAV+G+GPAGLT AA+LAKMGY V IFE
Sbjct: 117 ERFVADWAAEN------LEEDVKPLAGSKKEKVAVVGSGPAGLTAAADLAKMGYHVDIFE 170
Query: 185 ALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIF 244
A H+PGGVL YGIPEFRLPK IV++EV +++LGV N +VGKTV +EL E+DA+F
Sbjct: 171 AFHKPGGVLVYGIPEFRLPKRIVEREVSYIRKLGVNFHLNTVVGKTVKVKELLSEYDAVF 230
Query: 245 IGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNT 304
IGTGAGTP+ PG NLNG+YSANEFLTR+NLMKAY FPEYDTPI++GK+VAVIGAGNT
Sbjct: 231 IGTGAGTPKFMGIPGTNLNGVYSANEFLTRVNLMKAYLFPEYDTPIRVGKKVAVIGAGNT 290
Query: 305 AMDAARSALRLGAE-VWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGN 363
AMDAARSALRLGAE V+I+YRRT +EM AR EE HA EEG++F++L P R+IGD NGN
Sbjct: 291 AMDAARSALRLGAEKVYIVYRRTEREMPARREEYHHALEEGIEFLWLTLPIRYIGDANGN 350
Query: 364 LKAIELEKMKLGEPDETGRRRPIP-TGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDE 422
++A+E +M+L E D +GR RP+P G FV+E D I AIGQ PN+ L P L+++E
Sbjct: 351 VEAMECVRMELKEADGSGRPRPVPIEGSNFVLEVDMVIEAIGQGPNRVLLSEFPGLELNE 410
Query: 423 KGRIIVDENL-MTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLS 471
+G I DE+ TS+ GVFAGGD + G ATVI AMG G+KAA+ IH YL+
Sbjct: 411 RGYIKADEDTGATSVKGVFAGGDIVTGAATVIKAMGAGKKAAQFIHSYLT 460
>pir||A70477 glutamate synthase small subunit gltD - Aquifex aeolicus
>gi|2984275|gb|AAC07800.1| (AE000770) glutamate synthase
small subunit gltD [Aquifex aeolicus]
Length = 476
Score = 413 bits (1050), Expect = e-114
Identities = 225/476 (47%), Positives = 305/476 (63%), Gaps = 22/476 (4%)
Query: 7 ERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
+R P EER++ F E LGY+ LAL EA+RCL C CIKGCPV++DIPGFI
Sbjct: 9 DRNKEPTLPPEERVKTFREFELGYSVNLALDEAQRCLFCKDAEQRCIKGCPVHVDIPGFI 68
Query: 67 RALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVV--------GKVGD 118
+ + E + A K+I S+ P+I GRVCPQE QCEG C++ G
Sbjct: 69 KKITEGD------LVGAYKVITQSDIFPSICGRVCPQERQCEGSCILYYDTVRNRKNKGL 122
Query: 119 PVNIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY 178
PV IG LE+FV D+ R GIE E +E G RVAVIGAGPAGL+CA ELAK G+
Sbjct: 123 PVAIGALEKFVGDFIRISGIEIEEEKEPPTGF-----RVAVIGAGPAGLSCAHELAKKGH 177
Query: 179 EVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELRE 238
EV ++EAL +PGGV+ YGIP RL K I++ EV++L++LG+K L+GK +T +ELRE
Sbjct: 178 EVHVYEALPKPGGVMYYGIPNARLDKSIIEWEVKRLEKLGIKFFYGYLIGKNITLQELRE 237
Query: 239 EFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAV 298
++DA+FI GAG ++ PG +L G+YSA +FL R+NL KA +FP+ P+++GKR +
Sbjct: 238 KYDAVFIAVGAGRGKL-GLPGDHLKGVYSAIDFLMRVNLYKANEFPKKGVPVELGKRTVI 296
Query: 299 IGAGNTAMDAARSALRLGAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIG 358
IG G TA+D A +A RLG E ++YRRTR+ +AR+EE H EEGVK +L P IG
Sbjct: 297 IGGGFTAVDCAITANRLGVETHVVYRRTRETSSARQEEWDHLMEEGVKIHWLTQPVEVIG 356
Query: 359 DENGNLKAIELEKMKLGEPDETGRRRPIPT-GETFVMEFDTAIIAIGQTPNKTFLQTVPE 417
+E G + ++ KM+LGEPDE+GR RP+P ++E D+ I AIGQ N +
Sbjct: 357 NEKGEVVGLKCIKMELGEPDESGRPRPVPVPNSEHIIECDSVIFAIGQRANPIAYEG-SG 415
Query: 418 LKVDEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSSS 473
+K + G I V+E T++ GVFAGGD I G V++A+ G++AAK IH+YL S+
Sbjct: 416 IKTTKWGTIEVNERYETNLEGVFAGGDVINGGDRVVVALAHGKEAAKYIHEYLMSN 471
>pir||D71288 probable glutamate synthase (gltA) - syphilis spirochete
>gi|3323040|gb|AAC65703.1| (AE001245) glutamate synthase
(gltA) [Treponema pallidum]
Length = 518
Score = 405 bits (1029), Expect = e-112
Identities = 226/461 (49%), Positives = 295/461 (63%), Gaps = 29/461 (6%)
Query: 25 EVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDDPDKAVREAL 84
E LG+T + AL E++RCL C + PC+KGCPV + IP FI ++ A +EA+
Sbjct: 76 EAALGFTEQQALVESQRCLNCKTK--PCVKGCPVGVPIPEFIACVQRG------AFKEAV 127
Query: 85 KIIWDSNSLPAITGRVCPQEDQCEGVCVVGK----VGDPVNIGKLERFVADYARQHGIED 140
II ++ LPAI GRVCP E QC+ C VGK V V+IG LERFVAD+ RQHG
Sbjct: 128 DIIKTTSLLPAICGRVCPHERQCQLQCTVGKMFKDVSKAVSIGALERFVADWERQHG--- 184
Query: 141 ELLEEQIRG---IKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGI 197
QI K+VAVIG+GPAGL A++ A+ G+ VT+FEALH+PGGV+ YGI
Sbjct: 185 -----QITVPYCAPSTHKKVAVIGSGPAGLAVASDTARAGHSVTVFEALHKPGGVVTYGI 239
Query: 198 PEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREE--FDAIFIGTGAGTPRIY 255
PEFRLPKE+V E+E LK++GV N LVG+T T E+L + FDA+FIGTGAG PR
Sbjct: 240 PEFRLPKEVVVTEIETLKKMGVTFRMNFLVGRTATLEQLFSQYGFDAVFIGTGAGLPRFM 299
Query: 256 PWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRL 315
G L G+++AN++LTR LMKAY DTP+ K V V+G GN A+D++R+ALRL
Sbjct: 300 NIEGEELCGVFAANDYLTRATLMKAYDTAHADTPVYAAKSVVVVGGGNVAVDSSRTALRL 359
Query: 316 GAE-VWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKL 374
GAE V LYR+TR +MTA EEI AE+EGV F FL R +GDE GN++A+ +
Sbjct: 360 GAEQVHCLYRKTRADMTACVEEIAQAEDEGVTFHFLCQTTRILGDEEGNVRAVVFRDCQ- 418
Query: 375 GEPDETGRRRPIPTGET-FVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDENLM 433
E + G R +P G+ + D I+A+G N +T L V E+G I+VDE+
Sbjct: 419 -EQIDAGERVFLPCGDAECKLAADAVIVAVGNGSNPLMAKTTRSLAVSERGTIVVDEDQR 477
Query: 434 TSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSSSS 474
TSIPGV+AGGD + G ATVI AMG GR+AA +I+ YL+ +
Sbjct: 478 TSIPGVWAGGDIVLGAATVIRAMGQGRRAAASINAYLAQKA 518
>gb|AAB18329.1| (U73807) formate dehydrogenase beta subunit [Moorella
thermoacetica]
Length = 707
Score = 307 bits (779), Expect = 1e-82
Identities = 188/443 (42%), Positives = 259/443 (58%), Gaps = 42/443 (9%)
Query: 50 APCIKGCPVNIDIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEG 109
APC+K CP ++DIP +I A+++ R E+L II +L + GRVC CE
Sbjct: 195 APCLKRCPAHLDIPAYIDAIKDGR------YEESLAIIRQRTALAGVLGRVCVH--PCEE 246
Query: 110 VCVVGKVGDPVNIGKLERFVADYARQHGIEDELL-----------------EEQIRGIKR 152
C G V +P+ I L+RFVADY + G + E+ +
Sbjct: 247 NCRRGNVDEPLAIRGLKRFVADYEVKRGRRPVAVCGGNLFTGPWRPAGQAGGEETTAV-T 305
Query: 153 NGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVE 212
+GK+VA+IGAGPAGL+ A +LA GY+VTIFEAL GG+LA GIP +RLP++I+ E+E
Sbjct: 306 SGKKVAIIGAGPAGLSAAYQLAGRGYKVTIFEALPVAGGMLAVGIPSYRLPRDILAGEIE 365
Query: 213 KLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTG--AGTPRIYPWPGVNLNGIYSANE 270
+K LGV I N VG VT ++L+ ++DA+FI TG A + G +
Sbjct: 366 AIKALGVTINLNTRVGVDVTMDQLQRDYDAVFIATGLHASSRMGVAGEDEGYGGFIPGVK 425
Query: 271 FLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRLGA-EVWILYRRTRKE 329
FL +NL + P GK VAV+G GN AMD ARSALR GA EV ++YRR+R E
Sbjct: 426 FLRDLNLDRC--------PSLEGKVVAVVGGGNVAMDCARSALRRGAREVHLIYRRSRAE 477
Query: 330 MTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRPIPT- 388
M A E++ AE EGV + FLV+P + E GN+K ++ +MKLGEPD++GRRRP+P
Sbjct: 478 MPAHATEVRDAEAEGVIYHFLVNPTALVA-EKGNIKGMQCVRMKLGEPDDSGRRRPVPVP 536
Query: 389 GETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDE-NLMTSIPGVFAGGDAIR 447
G F + D + AIGQ + +FL ++V ++G I VD L TS+PGVFAGGD +
Sbjct: 537 GTEFFLPCDIVVPAIGQAADLSFLD--GRIEVGKRGTISVDPVTLATSVPGVFAGGDIVL 594
Query: 448 GEATVILAMGDGRKAAKAIHKYL 470
G TV+ A+ G +AA +I +YL
Sbjct: 595 GARTVVEAVAQGNRAAVSIDQYL 617
>sp|P37127|AEGA_ECOLI AEGA PROTEIN >gi|7451584|pir||C65022 yffG protein - Escherichia
coli (strain K-12) >gi|1788811|gb|AAC75521.1| (AE000333)
putative oxidoreductase, Fe-S subunit [Escherichia coli
K12]
Length = 659
Score = 294 bits (744), Expect = 2e-78
Identities = 181/484 (37%), Positives = 259/484 (53%), Gaps = 26/484 (5%)
Query: 5 IKERVPTPER------SVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPV 58
+++ TP R ++E R F+E+ L + + A REA RCL+C E++ C CP+
Sbjct: 184 VEQMQATPARGEPDKLAIEARKTGFDEIYLPFRADQAQREASRCLKCG-EHSVCEWTCPL 242
Query: 59 NIDIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD 118
+ IP +I ++ D A+++ +N+LP ITGRVCPQ+ CEG C +
Sbjct: 243 HNHIPQWIELVKAGNIDA------AVELSHQTNTLPEITGRVCPQDRLCEGACTIRDEHG 296
Query: 119 PVNIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY 178
V IG +ER+++D A G +L + + KRVA+IGAGPAGL CA L + G
Sbjct: 297 AVTIGNIERYISDQALAKGWRPDLSH-----VTKVDKRVAIIGAGPAGLACADVLTRNGV 351
Query: 179 EVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELRE 238
VT+++ E GG+L +GIP F+L K ++ + E +G+ E N VGK V+ + L E
Sbjct: 352 GVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGIHFELNCEVGKDVSLDSLLE 411
Query: 239 EFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFL--TRINLMKAYKFPEYDTPIKIGKRV 296
++DA+F+G G P + G+Y A FL +M + PE G V
Sbjct: 412 QYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNV 471
Query: 297 AVIGAGNTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKR 355
V+G G+TAMD R+ALR GA V YRR M ++E+K+A EEG F F V P
Sbjct: 472 VVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVA 531
Query: 356 FIGDENGNLKAIELEKMKLGEPDETGRRRPIPT-GETFVMEFDTAIIAIGQTPNKTFLQT 414
+E G++ I + +LGEPD GRRRP+P G FVM D I+A G P+
Sbjct: 532 LELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEGSEFVMPADAVIMAFGFNPHGMPWLE 591
Query: 415 VPELKVDEKGRIIVD----ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYL 470
+ VD+ GRII D T+ P +FAGGDA+RG V+ AM +GR AA+ I +L
Sbjct: 592 SHGVTVDKWGRIIADVESQYRYQTTNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWL 651
Query: 471 SSSS 474
S
Sbjct: 652 GVKS 655
>dbj|BAA16342.1| (D90875) similar to [SwissProt Accession Number P37127]~start codon
is not identified yet [Escherichia coli]
Length = 671
Score = 294 bits (744), Expect = 2e-78
Identities = 181/484 (37%), Positives = 259/484 (53%), Gaps = 26/484 (5%)
Query: 5 IKERVPTPER------SVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPV 58
+++ TP R ++E R F+E+ L + + A REA RCL+C E++ C CP+
Sbjct: 196 VEQMQATPARGEPDKLAIEARKTGFDEIYLPFRADQAQREASRCLKCG-EHSVCEWTCPL 254
Query: 59 NIDIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD 118
+ IP +I ++ D A+++ +N+LP ITGRVCPQ+ CEG C +
Sbjct: 255 HNHIPQWIELVKAGNIDA------AVELSHQTNTLPEITGRVCPQDRLCEGACTIRDEHG 308
Query: 119 PVNIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY 178
V IG +ER+++D A G +L + + KRVA+IGAGPAGL CA L + G
Sbjct: 309 AVTIGNIERYISDQALAKGWRPDLSH-----VTKVDKRVAIIGAGPAGLACADVLTRNGV 363
Query: 179 EVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELRE 238
VT+++ E GG+L +GIP F+L K ++ + E +G+ E N VGK V+ + L E
Sbjct: 364 GVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGIHFELNCEVGKDVSLDSLLE 423
Query: 239 EFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFL--TRINLMKAYKFPEYDTPIKIGKRV 296
++DA+F+G G P + G+Y A FL +M + PE G V
Sbjct: 424 QYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNV 483
Query: 297 AVIGAGNTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKR 355
V+G G+TAMD R+ALR GA V YRR M ++E+K+A EEG F F V P
Sbjct: 484 VVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVA 543
Query: 356 FIGDENGNLKAIELEKMKLGEPDETGRRRPIPT-GETFVMEFDTAIIAIGQTPNKTFLQT 414
+E G++ I + +LGEPD GRRRP+P G FVM D I+A G P+
Sbjct: 544 LELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEGSEFVMPADAVIMAFGFNPHGMPWLE 603
Query: 415 VPELKVDEKGRIIVD----ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYL 470
+ VD+ GRII D T+ P +FAGGDA+RG V+ AM +GR AA+ I +L
Sbjct: 604 SHGVTVDKWGRIIADVESQYRYQTTNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWL 663
Query: 471 SSSS 474
S
Sbjct: 664 GVKS 667
>pir||JC5184 glutamate synthase (GOGAT) (EC 1.4.1.-) small chain - Thiobacillus
ferrooxidans >gi|1033071|gb|AAA79783.1| (U36427)
glutamate synthase small subunit gltD [Acidithiobacillus
ferrooxidans]
Length = 465
Score = 289 bits (731), Expect = 6e-77
Identities = 172/459 (37%), Positives = 244/459 (52%), Gaps = 18/459 (3%)
Query: 16 VEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDD 75
VEER F E+ + A +A+RCL C Y C CPV+ IP +++ + ENR
Sbjct: 19 VEERREAFREIYQSFDLGSAQLQADRCLHCGNPY--CEWKCPVHNYIPNWLQLIVENR-- 74
Query: 76 PDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFVADYARQ 135
+ EA + +N+LP I GR+CPQ+ CEG C + G V IG LERFV + A
Sbjct: 75 ----LEEAATLSHQTNTLPEICGRICPQDRLCEGACTLNATGGAVTIGNLERFVTEEALA 130
Query: 136 HGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAY 195
+ ++ + I NGKRVAV+G GPAGL CA L + G EV +F+ GG+L +
Sbjct: 131 RAWQPDMPD-----ILPNGKRVAVVGGGPAGLGCADILNRAGTEVVVFDRYPAVGGLLTF 185
Query: 196 GIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIY 255
GIP F+L K +V + L+ +G++ + + VG+ ++ +L E+FDA+F+G G T +
Sbjct: 186 GIPSFKLEKAVVARRANLLQEMGIRFQLDTEVGRDISLGKLLEDFDAVFLGMGTYTAKTG 245
Query: 256 PWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPI--KIGKRVAVIGAGNTAMDAARSAL 313
+PG L G+ A +L N + P+ P GKRV V+G G+TAMD R+A+
Sbjct: 246 DFPGEKLPGVLKALSYLI-ANTRHLMQLPDPTLPYISLSGKRVVVLGGGDTAMDCLRTAI 304
Query: 314 RLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKM 372
R GA +V +YRR + M E+ +A EEGV F+F P +GD
Sbjct: 305 RQGARQVTCVYRRDEENMPGSRREVANAREEGVHFLFHRQPVEVVGDAASGSPGRASGGD 364
Query: 373 KLGEPDETGRRRP-IPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDEN 431
GEPD GRR P I G V++ D IIA G P+ + D +GRI +
Sbjct: 365 PSGEPDARGRRHPEIIPGSEQVLDADVVIIAFGFDPSPAPWFAEHHITTDSRGRISTNAQ 424
Query: 432 LMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYL 470
TS P +FAGGD RG V+ A+ +GR+AA+ I YL
Sbjct: 425 FQTSNPRIFAGGDMRRGSDLVVTAVDEGRRAAQGILDYL 463
>sp|P09832|GLTD_ECOLI GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN (GLUTAMATE SYNTHASE BETA
SUBUNIT) (NADPH-GOGAT) (GLTS BETA CHAIN)
>gi|7448188|pir||G65112 glutamate synthase (NADPH) (EC
1.4.1.13) small chain - Escherichia coli
>gi|606152|gb|AAA58015.1| (U18997) glutamate synthase,
small subunit [Escherichia coli]
>gi|1789606|gb|AAC76245.1| (AE000400) glutamate
synthase, small subunit [Escherichia coli K12]
Length = 472
Score = 284 bits (718), Expect = 2e-75
Identities = 169/473 (35%), Positives = 260/473 (54%), Gaps = 23/473 (4%)
Query: 7 ERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
+RV P++ ++ R +F E+ ++ A +A+RCL C Y C CPV+ IP ++
Sbjct: 12 QRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQADRCLSCGNPY--CEWKCPVHNYIPNWL 69
Query: 67 RALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLE 126
+ E R + EA ++ +N+LP + GRVCPQ+ CEG C + V IG +E
Sbjct: 70 KLANEGR------IFEAAELSHQTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIE 123
Query: 127 RFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEAL 186
R++ D A + G ++ G+K+ GK+VA+IGAGPAGL CA L + G + +F+
Sbjct: 124 RYINDKAFEMGWRPDM-----SGVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVVFDRH 178
Query: 187 HEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIG 246
E GG+L +GIP F+L KE++ + E +G++ + N VG+ V ++L ++DA+F+G
Sbjct: 179 PEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLG 238
Query: 247 TGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPE-YDTPI--KIGKRVAVIGAGN 303
G + +G+Y+A FL N + F E D P GKRV V+G G+
Sbjct: 239 VGTYQSMRGGLENEDADGVYAALPFLI-ANTKQLMGFGETRDEPFVSMEGKRVVVLGGGD 297
Query: 304 TAMDAARSALRLGAE-VWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENG 362
TAMD R+++R GA+ V YRR + M E+K+A EEGV+F F V P + NG
Sbjct: 298 TAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNG 357
Query: 363 NLKAIELEKMKLGEPDETGRRR-PIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVD 421
+ +++ + ++GEPD GRRR I G ++ D I+A G P+ +++D
Sbjct: 358 KVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEWLAKHSVELD 417
Query: 422 EKGRIIV----DENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYL 470
+GRII D TS P +FAGGD +RG V+ A+ +GRKAA I +L
Sbjct: 418 SQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWL 470
>pir||G83017 glutamate synthase small chain PA5035 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|1750398|gb|AAB39260.1|
(U81261) glutamate synthase small subunit [Pseudomonas
aeruginosa] >gi|9951324|gb|AAG08420.1|AE004916_9
(AE004916) glutamate synthase small chain [Pseudomonas
aeruginosa]
Length = 477
Score = 279 bits (707), Expect = 4e-74
Identities = 165/465 (35%), Positives = 259/465 (55%), Gaps = 22/465 (4%)
Query: 13 ERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALREN 72
++ + +R R+F E++ + + A +A RCL C Y C CPV+ IP +++ + E
Sbjct: 26 KKLLRQRKREFVEIHDLFKPQQAADQAHRCLGCGNPY--CEWKCPVHNFIPNWLKLVSEG 83
Query: 73 RDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFVADY 132
+ A ++ +N+LP + GRVCPQ+ CEG C + V IG +E+++ D
Sbjct: 84 N------ILAAAELSHQTNTLPEVCGRVCPQDRLCEGACTLNDGFGAVTIGSVEKYITDT 137
Query: 133 ARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGV 192
A G +L + +K G+RVAVIGAGPAGL CA L + G +F+ E GG+
Sbjct: 138 AFAMGWRPDLSK-----VKPTGRRVAVIGAGPAGLGCADVLVRNGVTPVVFDRNPEIGGL 192
Query: 193 LAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTP 252
L +GIPEF+L K ++ + E +G++ N +GK VT E+L +E+DA+F+G G T
Sbjct: 193 LTFGIPEFKLEKHVLSRRREVFTGMGIEFRLNTEIGKDVTMEQLLDEYDAVFMGMGTYTY 252
Query: 253 RIYPWPGVNLNGIYSANEFL-TRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARS 311
+PG +L G++ A +FL +N ++ D GKRV V+G G+TAMD R+
Sbjct: 253 MKGGFPGEDLPGVHDALDFLIANVNRNLGFEKSAEDFVDMKGKRVVVLGGGDTAMDCNRT 312
Query: 312 ALRLGAE-VWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELE 370
++R GA+ V YRR + M +E+K+A+EEGVKF+F P +G++ ++ +++
Sbjct: 313 SIRQGAKSVTCAYRRDEENMPGSRKEVKNAKEEGVKFLFNRQPIAIVGED--RVEGVKVV 370
Query: 371 KMKLGEPDETGRRRPIP-TGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVD 429
+ +LGEPD GRR P P G ++ + +IA G P+ E+ D +GR++
Sbjct: 371 ETRLGEPDARGRRSPEPIPGSEEIIPAEAVLIAFGFRPSPAPWFERFEIATDSQGRVVAP 430
Query: 430 ENL----MTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYL 470
TS P +FAGGD +RG V+ A+ +GR AA+ I YL
Sbjct: 431 AQAQFKHQTSNPKIFAGGDMVRGSDLVVTAIFEGRTAAEGILDYL 475
>gb|AAG38999.1|AF192408_3 (AF192408) NADPH-dependent glutamate synthase small subunit
precursor [Azospirillum brasilense]
Length = 482
Score = 275 bits (696), Expect = 7e-73
Identities = 176/478 (36%), Positives = 259/478 (53%), Gaps = 28/478 (5%)
Query: 7 ERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
+R+P +R ER +DF E+ ++ E A +A RC QC + C CPV+ +IP ++
Sbjct: 14 QRMPD-KRPAAERRQDFAEIYARFSDERANEQANRCSQCGVPF--CQVHCPVSNNIPDWL 70
Query: 67 RALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGK-VGDPVNIGKL 125
+ E R + EA ++ +N+ P I GR+CPQ+ CEG CV+ + V IG +
Sbjct: 71 KLTSEGR------LEEAYEVSQATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSV 124
Query: 126 ERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEA 185
E+++ D A G + G+ V VIGAGPAGL A EL GYEV +++
Sbjct: 125 EKYINDTAWDQGWVKPRTPSRELGLS-----VGVIGAGPAGLAAAEELRAKGYEVHVYDR 179
Query: 186 LHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFI 245
GG+L YGIP F+L K +V++ V+ L GV N VG+ + ELR + A+ +
Sbjct: 180 YDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPELRRKHVAVLV 239
Query: 246 GTGAGTPRIYPWPGVNLNGIYSANEFLT---RINLMKAYKFPEYDTPIKIGKRVAVIGAG 302
TG R PG L I +A ++LT +++L + E + GK V V+G G
Sbjct: 240 ATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG 299
Query: 303 NTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDEN 361
+TAMD R+A+R GA V LYRR RK M + E+ HAEEEGV+F++ +P+ F GD
Sbjct: 300 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDT- 358
Query: 362 GNLKAIELEKMKLGEPDETGRRRP-IPTGETFVMEFDTAIIAIGQTPN---KTFLQTVPE 417
+ + ++ LG D TGR+ P + G F ++ D I A+G P F + PE
Sbjct: 359 -VVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDE--PE 415
Query: 418 LKVDEKGRIIVDENL-MTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSSSS 474
LKV G ++VD MT++ GVFA GD +RG + V+ A+ DGR AA+ IH Y + +
Sbjct: 416 LKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAKAKA 473
>emb|CAC11556.1| (AL445064) GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN related protein
[Thermoplasma acidophilum]
Length = 484
Score = 272 bits (688), Expect = 6e-72
Identities = 182/477 (38%), Positives = 272/477 (56%), Gaps = 43/477 (9%)
Query: 7 ERVPTPERSVEERIRDFNEVNL-GYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGF 65
ERV + +ER++ F+ L YT E A+ EA RCL C C CP ++DI G+
Sbjct: 5 ERVRIKKADPDERVKTFDIEPLDNYTDEEAIAEASRCLGCNM----CSAACPASLDISGY 60
Query: 66 IRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKL 125
IR+ DP + VR II ++ PAI GRVC CE +CV+ G P+ I L
Sbjct: 61 IRSTAAG--DPAQTVR----IIMETLPFPAIIGRVCTH--MCEDICVMYDGGGPIAIRHL 112
Query: 126 ERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEA 185
+R+ AD +G E+L Q R K GK+VAVIG GPAGLT A L+ G +VT+FE
Sbjct: 113 KRYAADKFDDYG---EILRPQKR--KFIGKKVAVIGGGPAGLTVAYYLSLQGVKVTLFEE 167
Query: 186 LHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFI 245
GG + GIP +RLP+ ++ KE+ + GV ++ N VG+ ++F+++ +E+DA+F+
Sbjct: 168 RPALGGFMKTGIPRYRLPQSVLDKEIGYVVSRGVDVKLNTKVGRDISFDQIMKEYDAVFL 227
Query: 246 GTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTA 305
G G PR+ PG + + A EFL R++ + I +G VAVIG G TA
Sbjct: 228 GVGNHKPRMTGTPGSDAPNVMHATEFLERVS---------FGERIDVGDTVAVIGGGFTA 278
Query: 306 MDAARSALRLGAE-VWILYRRTRKEMTA-----REEEIKHAEEEGVKFMFLVSPKRFIGD 359
D+AR++LRLGA+ V+I+YRR + +EE+ AEEE V++++ V+P ++
Sbjct: 279 NDSARTSLRLGAKHVYIMYRRRDVDRPGYPSMNADEEMDEAEEEKVEYVWEVTPFEYV-K 337
Query: 360 ENGNLKAIEL---EKMKLGEPDETGRRRPIP-TGETFVMEFDTAIIAIGQTPNKTFL-QT 414
ENG + A++ E +K G+ GR +P+P + + ++ D I A GQ + +FL
Sbjct: 338 ENGRVVAMKYWMNEMVKEGK----GRAKPVPIKDKVYTIKVDMVIEATGQETDYSFLGDY 393
Query: 415 VPELKVDEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLS 471
V +L+++ G IVD+N MTSI GVF+GGD+ +I A+ DG A + I KYL+
Sbjct: 394 VKKLRLNPHGEPIVDQNGMTSIEGVFSGGDSTNPNRDLISAVRDGDIAVQGILKYLN 450
>pir||G82083 glutamate synthase, small subunit VC2377 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656948|gb|AAF95520.1| (AE004308) glutamate
synthase, small subunit [Vibrio cholerae]
Length = 471
Score = 270 bits (684), Expect = 2e-71
Identities = 164/473 (34%), Positives = 250/473 (52%), Gaps = 27/473 (5%)
Query: 8 RVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIR 67
RV ++ + R +F E+ +T + A +A+RCL C Y C CPV+ IP +++
Sbjct: 14 RVDPAKKPLHIRKIEFVEIYEPFTKQQATAQADRCLDCGNPY--CEWKCPVHNYIPQWLK 71
Query: 68 ALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLER 127
E R + EA + +NSLP + GRVCPQ+ CEG C + V IG +E+
Sbjct: 72 LANEGR------ILEAADLAHQTNSLPEVCGRVCPQDRLCEGSCTLNADFGAVTIGNIEK 125
Query: 128 FVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALH 187
++ D A + G + ++ + K+VA+IGAGPAGL A L + G +F+
Sbjct: 126 YITDTAFEMGWKPDM-----SNVVWTDKKVAIIGAGPAGLAAADILVRNGVRPVVFDRYP 180
Query: 188 EPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGT 247
E GG+L +GIP F+L K +++ +G++ NV VG+ +T ++L +E+DA+F+G
Sbjct: 181 EIGGLLTFGIPSFKLEKGVMENRRRIFSEMGIEFRLNVEVGQDITLQQLLDEYDAVFLGV 240
Query: 248 GAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKI----GKRVAVIGAGN 303
G + G+Y A FL + YK E + GK V V+G G+
Sbjct: 241 GTYQYMRAGLANEDAPGVYDALPFL----ISNTYKVMELNNEAPFIDMAGKNVVVLGGGD 296
Query: 304 TAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENG 362
TAMD R+++R GA V YRR + M E+K+A+EEGV+FMF + P + G
Sbjct: 297 TAMDCVRTSIRQGASRVICAYRRDEENMPGSRREVKNAKEEGVEFMFNLQPLGIEVNAQG 356
Query: 363 NLKAIELEKMKLGEPDETGRRRPIP-TGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVD 421
+ +++ K LGEPD GRR+P P G V+ D I+A G P+K ++++D
Sbjct: 357 QVTGVKVVKTALGEPDAAGRRKPEPVAGSEHVLPADAVIMAFGFQPHKMAWLEPFDVELD 416
Query: 422 EKGRIIVDE----NLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYL 470
+ GRI T+ P +FAGGDA+RG V+ A+ +GRKAA+ I YL
Sbjct: 417 QWGRIKAPAKQTYQYQTTNPKIFAGGDAVRGSDLVVTAIDEGRKAAEGILDYL 469
>gb|AAD56915.1|AF180145_7 (AF180145) glutamate synthase small subunit gltS [Zymomonas
mobilis]
Length = 490
Score = 269 bits (680), Expect = 6e-71
Identities = 178/479 (37%), Positives = 270/479 (56%), Gaps = 30/479 (6%)
Query: 5 IKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPG 64
+K+ P +RS +ER +DFNE+ ++ E A +A RC QC Y C CP++ +IP
Sbjct: 12 LKQAYPE-KRSAQERDKDFNEIYRSFSDEQASCQASRCSQCGVPY--CSAYCPLHNNIPD 68
Query: 65 FIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD-PVNIG 123
+++ E R +++A + ++++P I GR+CPQ+ CEG CV+ G V IG
Sbjct: 69 WLKMTAEGR------LQDAYALSSATSTMPEICGRICPQDRLCEGNCVIENSGHGAVTIG 122
Query: 124 KLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIF 183
+E+++ D A + G E ++ I G V +IG+GPAGLT A +L + GY+V ++
Sbjct: 123 SVEKYITDTAWKEG-----WVEPLQPITELGISVGIIGSGPAGLTAAEKLRQQGYQVHVY 177
Query: 184 EALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELRE--EFD 241
+ GG+L Y IP FRL K+IV + V++L G + + V L+
Sbjct: 178 DRHVRAGGLLTYCIPGFRLDKDIVARRVKRLADWGCHLPYQ--FARRVKMPALKNCVTHA 235
Query: 242 AIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAY--KFPEYD--TPIKIGKRVA 297
AI I TG R PG LNGI A +FL N K++ K +D T GK+V
Sbjct: 236 AILIATGVYKARGLATPGKELNGIVDALDFLISSN-RKSFGDKVEAFDNGTLDAKGKKVV 294
Query: 298 VIGAGNTAMDAARSALRLGAE-VWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRF 356
VIG G+TAMD R+A+R GAE V LYRR R M E+K+AE+EG +F++L +P+ F
Sbjct: 295 VIGGGDTAMDCVRTAIRQGAESVRCLYRRDRVNMPGSAREVKNAEDEGAEFVWLSAPESF 354
Query: 357 IGDENGNLKAIELEKMKLGEPDETGRRRPIP-TGETFVMEFDTAIIAIGQTP-NKTFLQT 414
+G + +++++++ M+LG PD +GRR P P F M+ D I A+G +P + L
Sbjct: 355 VGKD--HVQSVKVRGMRLGAPDGSGRRSPEPDPARLFDMDADLVICALGFSPEDLPTLFN 412
Query: 415 VPELKVDEKGRIIVDE-NLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSS 472
PEL V G + D L TSI GVFA GD +RG + V+ A+ DG A++ +H++L++
Sbjct: 413 APELSVTPWGTVEADPVTLQTSIEGVFAAGDIVRGASLVVWAIRDGLVASEQMHQWLAT 471
>sp|Q46820|YGFT_ECOLI HYPOTHETICAL 69.1 KD PROTEIN IN KDUI-LYSS INTERGENIC REGION
Length = 639
Score = 268 bits (677), Expect = 1e-70
Identities = 172/469 (36%), Positives = 248/469 (52%), Gaps = 22/469 (4%)
Query: 5 IKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPG 64
+ R + S ER F E+ G + A E++RC+ C E A C CP++ IP
Sbjct: 173 VNSRKGADKISASERKTHFGEIYCGLDPQQATYESDRCVYCA-EKANCNWHCPLHNAIPD 231
Query: 65 FIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGK 124
+IR ++E + + EA ++ ++SLP I GRVCPQ+ CEG C + V+IG
Sbjct: 232 YIRLVQEGK------IIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGN 285
Query: 125 LERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
LER++ D A G ++ + + ++VAVIGAGPAGL CA LA+ G +V +F+
Sbjct: 286 LERYITDTALAMGWRPDVSK-----VVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFD 340
Query: 185 ALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIF 244
E GG+L +GIP F+L K ++ + E +G+ N +G+ +TF +L E+DA+F
Sbjct: 341 RHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVF 400
Query: 245 IGTGAGTPRIYPWPGVNLNGIYSANEFLT--RINLMKAYKFPEYDTPIKIGKRVAVIGAG 302
IG G P + G+ A FLT LM + EY GKRV V+G G
Sbjct: 401 IGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGG 460
Query: 303 NTAMDAARSALRL-GAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDEN 361
+T MD R+++RL A V YRR M +E+ +A EEGV+F F V P+ DE+
Sbjct: 461 DTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDED 520
Query: 362 GNLKAIELEKMKLGEPDETGRRRPIP-TGETFVMEFDTAIIAIG-QTPNKTFLQTVPELK 419
G L A+ L + +GEP GRRRP P G F + D I+A G Q +LQ +K
Sbjct: 521 GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQG-SGIK 579
Query: 420 VDEKGRIIVDE----NLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAK 464
+D+ G I + T + VFAGGDA+ G V+ AM GR+AA+
Sbjct: 580 LDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAAR 628
>pir||G65072 hypothetical protein b2887 - Escherichia coli (strain K-12)
>gi|887837|gb|AAA83068.1| (U28375) ORF_f644 [Escherichia
coli] >gi|1789253|gb|AAC75925.1| (AE000372) putative
oxidoreductase, Fe-S subunit [Escherichia coli K12]
Length = 644
Score = 268 bits (677), Expect = 1e-70
Identities = 172/469 (36%), Positives = 248/469 (52%), Gaps = 22/469 (4%)
Query: 5 IKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPG 64
+ R + S ER F E+ G + A E++RC+ C E A C CP++ IP
Sbjct: 178 VNSRKGADKISASERKTHFGEIYCGLDPQQATYESDRCVYCA-EKANCNWHCPLHNAIPD 236
Query: 65 FIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGK 124
+IR ++E + + EA ++ ++SLP I GRVCPQ+ CEG C + V+IG
Sbjct: 237 YIRLVQEGK------IIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGN 290
Query: 125 LERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
LER++ D A G ++ + + ++VAVIGAGPAGL CA LA+ G +V +F+
Sbjct: 291 LERYITDTALAMGWRPDVSK-----VVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFD 345
Query: 185 ALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIF 244
E GG+L +GIP F+L K ++ + E +G+ N +G+ +TF +L E+DA+F
Sbjct: 346 RHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVF 405
Query: 245 IGTGAGTPRIYPWPGVNLNGIYSANEFLT--RINLMKAYKFPEYDTPIKIGKRVAVIGAG 302
IG G P + G+ A FLT LM + EY GKRV V+G G
Sbjct: 406 IGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGG 465
Query: 303 NTAMDAARSALRL-GAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDEN 361
+T MD R+++RL A V YRR M +E+ +A EEGV+F F V P+ DE+
Sbjct: 466 DTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDED 525
Query: 362 GNLKAIELEKMKLGEPDETGRRRPIP-TGETFVMEFDTAIIAIG-QTPNKTFLQTVPELK 419
G L A+ L + +GEP GRRRP P G F + D I+A G Q +LQ +K
Sbjct: 526 GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQG-SGIK 584
Query: 420 VDEKGRIIVDE----NLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAK 464
+D+ G I + T + VFAGGDA+ G V+ AM GR+AA+
Sbjct: 585 LDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAAR 633
>sp|Q05756|GLTD_AZOBR GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN (GLUTAMATE SYNTHASE BETA
SUBUNIT) (NADPH-GOGAT) (GLTS BETA CHAIN)
>gi|420793|pir||A46602 glutamate synthase (NADPH) (EC
1.4.1.13) beta chain [validated] - Azospirillum
brasilense
Length = 481
Score = 266 bits (674), Expect = 3e-70
Identities = 172/468 (36%), Positives = 253/468 (53%), Gaps = 28/468 (5%)
Query: 7 ERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
+R+P +R ER +DF E+ ++ E A +A RC QC + C CPV+ +IP ++
Sbjct: 14 QRMPD-KRPAAERRQDFAEIYARFSDERANEQANRCSQCGVPF--CQVHCPVSNNIPDWL 70
Query: 67 RALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGK-VGDPVNIGKL 125
+ E R + EA ++ +N+ P I GR+CPQ+ CEG CV+ + V IG +
Sbjct: 71 KLTSEGR------LEEAYEVSQATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSV 124
Query: 126 ERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEA 185
E+++ D A G + G+ V VIGAGPAGL A EL GYEV +++
Sbjct: 125 EKYINDTAWDQGWVKPRTPSRELGLS-----VGVIGAGPAGLAAAEELRAKGYEVHVYDR 179
Query: 186 LHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFI 245
GG+L YGIP F+L K +V++ V+ L GV N VG+ + ELR + A+ +
Sbjct: 180 YDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPELRRKHVAVLV 239
Query: 246 GTGAGTPRIYPWPGVNLNGIYSANEFLT---RINLMKAYKFPEYDTPIKIGKRVAVIGAG 302
TG R PG L I +A ++LT +++L + E + GK V V+G G
Sbjct: 240 ATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG 299
Query: 303 NTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDEN 361
+TAMD R+A+R GA V LYRR RK M + E+ HAEEEGV+F++ +P+ F GD
Sbjct: 300 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGDT- 358
Query: 362 GNLKAIELEKMKLGEPDETGRRRP-IPTGETFVMEFDTAIIAIGQTPN---KTFLQTVPE 417
+ + ++ LG D TGR+ P + G F ++ D I A+G P F + PE
Sbjct: 359 -VVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDE--PE 415
Query: 418 LKVDEKGRIIVDENL-MTSIPGVFAGGDAIRGEATVILAMGDGRKAAK 464
LKV G ++VD MT++ GVFA GD +RG + V+ A+ DGR A +
Sbjct: 416 LKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAGR 463
>pir||H82523 glutamate synthase, beta subunit XF2709 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107954|gb|AAF85506.1|AE004077_2 (AE004077)
glutamate synthase, beta subunit [Xylella fastidiosa]
Length = 494
Score = 264 bits (667), Expect = 2e-69
Identities = 167/493 (33%), Positives = 255/493 (50%), Gaps = 37/493 (7%)
Query: 1 MPKLIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNI 60
+P+ + +R+P R+ D+ E+ + A +A RCL C Y C CPV+
Sbjct: 12 LPRQMPQRIPVELRTSG----DWRELYGKFDKAEAQYQAGRCLDCGNPY--CSWKCPVHN 65
Query: 61 DIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPV 120
IP +++ ++ENR D EA + +N LP + GRVCPQ+ CEG C + + G V
Sbjct: 66 AIPQWLQLVQENRID------EAAALCHATNPLPEVCGRVCPQDRLCEGSCTLEEFG-AV 118
Query: 121 NIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEV 180
IG +E+++ D A Q G +L ++ G RVAV+GAGPAGL CA LA+ G +
Sbjct: 119 TIGAVEKYIVDTALQQGWRPDLSH-----VQPTGWRVAVVGAGPAGLACADRLARAGVQA 173
Query: 181 TIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEF 240
+++ + GG+L +GIP F+L K ++ + L+ +GV+ V +GK + E L E +
Sbjct: 174 VVYDRYEQIGGLLQFGIPSFKLDKAVMSTRRKVLEGMGVEFRLGVEIGKDLGIEALLEHY 233
Query: 241 DAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFP----------EYDTPI 290
DA+F+G GA PG +L + A FL + + + P + P
Sbjct: 234 DAVFLGVGAYRYTDGGLPGQDLKNVLPALPFLVQNGRIVSGNDPYGRPIAGWEDQVQLPD 293
Query: 291 KIGKRVAVIGAGNTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMF 349
GK V V+G G+T MD RSA+RLGA +V +YRR M E+ +A EEGV+F+F
Sbjct: 294 VTGKSVVVLGGGDTGMDCVRSAIRLGATKVTCIYRRDEANMPGSAREVANAREEGVRFLF 353
Query: 350 LVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRPIP-TGETFVMEFDTAIIAIGQTPN 408
P + + + + KL EPD GRR +P G V+E D IIA G +P
Sbjct: 354 NRQPLSIQSGTDKQAIGVTVVETKLAEPDANGRRNAVPIQGTEAVLEADVVIIAFGFSPM 413
Query: 409 KTFLQTVPELKVDEKGRIIV-------DENLMTSIPGVFAGGDAIRGEATVILAMGDGRK 461
T ++ GRI+V T+ P +FAGGD +RG V+ A+ +GR
Sbjct: 414 LPEWLTAQGIQASSNGRIVVALSDTGDGLTYQTTHPKLFAGGDCVRGADLVVTAVAEGRD 473
Query: 462 AAKAIHKYLSSSS 474
AA++I ++L +++
Sbjct: 474 AAESIVRWLRATA 486
>pir||JE0142 glutamate synthase (EC 1.4.1.-) small chain - Rhodobacter
sphaeroides
Length = 413
Score = 254 bits (641), Expect = 2e-66
Identities = 158/406 (38%), Positives = 233/406 (56%), Gaps = 21/406 (5%)
Query: 73 RDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD-PVNIGKLERFVAD 131
R+ P+K R S I GR+CPQ+ +CEG CV+ + G V IG +E+++ D
Sbjct: 14 RETPEKRPRSKR-----SQDFGEICGRICPQDRKCEGNCVIEQSGHGTVTIGAVEKYITD 68
Query: 132 YARQHG--IEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEP 189
A ++G + + E+ + V +IGAGP GL A L + G +VT+++
Sbjct: 69 TAWENGWVVPGKPAYER-------SESVGIIGAGPGGLAAADALRRAGLQVTVYDRYDRA 121
Query: 190 GGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGA 249
GG+L YGIP F+L K++V + VE+L++ GV+ N VG+ ++F+ +R + DA+ I TG
Sbjct: 122 GGLLTYGIPGFKLEKDVVARRVEQLEQAGVQFVLNCNVGEDLSFDAIRGQHDAVLIATGV 181
Query: 250 GTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAA 309
R PGV G+ A +LT N + D GKRV VIG G+TAMD
Sbjct: 182 YKQRDLAAPGVGSAGVVQALSYLTASNRRSFGDEVDDDGLDASGKRVVVIGGGDTAMDCV 241
Query: 310 RSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIE 368
R+A+R GA V LYRR R M + E+ +AEEEGV+F++L +P+ FI + ++ +
Sbjct: 242 RTAIRQGATSVKCLYRRDRANMPGSQREVANAEEEGVEFVWLSAPRGFIAGD--AVEGVI 299
Query: 369 LEKMKLGEPDETGRRRP-IPTGETFVMEFDTAIIAIGQTP-NKTFLQTVPELKVDEKGRI 426
++KM+LGEPD TGR+ P I G +V D AI+A+G P + L VP+L V G I
Sbjct: 300 VQKMRLGEPDATGRQMPEIIEGADYVEPADLAIMALGFEPEDLPTLWGVPDLTVTRWGTI 359
Query: 427 IVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLS 471
D TS+PGV+A GD +RG + V+ A+ DGR AA++I YL+
Sbjct: 360 KADFRTHATSLPGVYAVGDIVRGASLVVWAIRDGRDAAQSILDYLA 405
>gb|AAB46944.1| (L34011) Fe-S center and glutamate synthase (GltD) protein
[Escherichia coli]
Length = 652
Score = 253 bits (640), Expect = 3e-66
Identities = 153/414 (36%), Positives = 221/414 (52%), Gaps = 22/414 (5%)
Query: 5 IKERVPTPER------SVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPV 58
+++ TP R ++E R F+E+ L + + A REA RCL+C E++ C CP+
Sbjct: 184 VEQMQATPARGEPDKLAIEARKTGFDEIYLPFRADQAQREASRCLKCG-EHSVCEWTCPL 242
Query: 59 NIDIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD 118
+ IP +I ++ D A+++ +N+LP ITGRVCPQ+ CEG C +
Sbjct: 243 HNHIPQWIELVKAGNIDA------AVELSHQTNTLPEITGRVCPQDRLCEGACTIRDEHG 296
Query: 119 PVNIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY 178
V IG +ER+++D A G +L + + KRVA+IGAGPAGL CA L + G
Sbjct: 297 AVTIGNIERYISDQALAKGWRPDLSH-----VTKVDKRVAIIGAGPAGLACADVLTRNGV 351
Query: 179 EVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELRE 238
VT+++ E GG+L +GIP F+L K ++ + E +G+ E N VGK V+ + L E
Sbjct: 352 GVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGIHFELNCEVGKDVSLDSLLE 411
Query: 239 EFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFL--TRINLMKAYKFPEYDTPIKIGKRV 296
++DA+F+G G P + G+Y A FL +M + PE G V
Sbjct: 412 QYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNV 471
Query: 297 AVIGAGNTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKR 355
V+G G+TAMD R+A R GA V YRR M ++E K+A EEG F F V P
Sbjct: 472 VVLGGGDTAMDCVRTARRHGASNVTCAYRRDEANMPGSKKEAKNAREEGANFEFNVQPVA 531
Query: 356 FIGDENGNLKAIELEKMKLGEPDETGRRRPIPT-GETFVMEFDTAIIAIGQTPN 408
+E G++ I + +LGEPD GRRRP+P G FVM D I+A G P+
Sbjct: 532 LELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEGSEFVMPADAVIMAFGFNPH 585
>emb|CAA73084.1| (Y12481) glutamine--pyruvate aminotransferase [Rhodobacter
sphaeroides]
Length = 413
Score = 253 bits (640), Expect = 3e-66
Identities = 158/414 (38%), Positives = 236/414 (56%), Gaps = 24/414 (5%)
Query: 65 FIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD-PVNIG 123
F++ RE + +++R S I GR+CPQ+ CEG CV+ + G V IG
Sbjct: 9 FVKMARETPEKRPRSLR--------SQDFHEICGRICPQDRLCEGNCVIEQSGHGTVTIG 60
Query: 124 KLERFVADYARQHG--IEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVT 181
+E+++ D A ++G + + E+ + V +IGAGP GL A L + G +VT
Sbjct: 61 AVEKYITDTAWENGWVVPGKPAYER-------SESVGIIGAGPGGLAAADALRRAGLQVT 113
Query: 182 IFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFD 241
+++ GG+L YGIP F+L K++V + VE+L++ GV+ N VG+ ++F+ +R + D
Sbjct: 114 VYDRYDRAGGLLTYGIPGFKLEKDVVARRVEQLEQAGVQFVLNCNVGEDLSFDAIRGQHD 173
Query: 242 AIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGA 301
A+ I TG R PGV G+ A +LT N + D GKRV VIG
Sbjct: 174 AVLIATGVYKQRDLAAPGVGSAGVVQALSYLTASNRRSFGDEVDDDGLDASGKRVVVIGG 233
Query: 302 GNTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
G+TAMD R+A+R GA V LYRR R M + E+ +AEEEGV+F++L +P+ FI +
Sbjct: 234 GDTAMDCVRTAIRQGATSVKCLYRRDRANMPGSQREVANAEEEGVEFVWLSAPRGFIAGD 293
Query: 361 NGNLKAIELEKMKLGEPDETGRRRP-IPTGETFVMEFDTAIIAIGQTP-NKTFLQTVPEL 418
++ + ++KM+LGEPD TGR+ P I G +V D AI+A+G P + L VP+L
Sbjct: 294 --AVEGVIVQKMRLGEPDATGRQMPEIIEGADYVEPADLAIMALGFEPEDLPTLWGVPDL 351
Query: 419 KVDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLS 471
V G I D TS+PGV+A GD +RG + V+ A+ DGR AA++I YL+
Sbjct: 352 TVTRWGTIKADFRTHATSLPGVYAVGDIVRGASLVVWAIRDGRDAAQSILDYLA 405
>gb|AAD18034.1| (AF119099) glutamate synthase small subunit [Pseudomonas
fluorescens]
Length = 437
Score = 248 bits (627), Expect = 9e-65
Identities = 147/422 (34%), Positives = 235/422 (54%), Gaps = 20/422 (4%)
Query: 13 ERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALREN 72
++ + +R ++F E+ + + + +A RCL C Y C CPV+ IP +++ + E
Sbjct: 21 KKLLRQRKKEFVEIYEPFKPQQSADQAHRCLGCGNPY--CEWKCPVHNFIPNWLKLVAEG 78
Query: 73 RDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFVADY 132
+ +A ++ +N+LP + GRVCPQ+ CEG C + V IG +E+++ D
Sbjct: 79 N------ILQAAELSHQTNTLPEVCGRVCPQDRLCEGACTLNDGFGAVTIGSVEKYITDT 132
Query: 133 ARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGV 192
A G ++ + +K GKRVA+IGAGPAGL CA L + G +F+ E GG+
Sbjct: 133 AFAMGWRPDMSK-----VKPTGKRVAIIGAGPAGLGCADVLVRGGVTPVVFDKNPEIGGL 187
Query: 193 LAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTP 252
L +GIPEF+L K ++ E +G++ N VGK VT E+L EE+DA+F+G G T
Sbjct: 188 LTFGIPEFKLEKTVLSNRREVFTGMGIEFRLNTEVGKDVTMEQLLEEYDAVFMGMGTYTY 247
Query: 253 RIYPWPGVNLNGIYSANEFL-TRINLMKAY-KFPEYDTPIKIGKRVAVIGAGNTAMDAAR 310
+ G +L G+Y A +FL +N + K PE +K GK+V V+G G+TAMD R
Sbjct: 248 MKGGFAGEDLPGVYDALDFLIANVNRNLGFEKSPEDFVDMK-GKKVVVLGGGDTAMDCNR 306
Query: 311 SALRLGAE-VWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIEL 369
+++R GA+ V YRR M +E+K+A+EEGVKF++ P +G++ ++ +++
Sbjct: 307 TSIRQGAKSVTCAYRRDEANMPGSRKEVKNAKEEGVKFLYNRQPIAIVGED--KVEGVKV 364
Query: 370 EKMKLGEPDETGRRRPIP-TGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIV 428
+ +LGEPD GRR P P G ++ D +IA G P+ ++ D +GR++
Sbjct: 365 VETRLGEPDARGRRSPEPIPGSEEIIPADAVVIAFGFRPSPAPWFEQFSIQTDSQGRVVA 424
Query: 429 DE 430
E
Sbjct: 425 PE 426
>pir||G72281 glutamate synthase, beta subunit - Thermotoga maritima (strain
MSB8) >gi|4981770|gb|AAD36292.1|AE001778_13 (AE001778)
glutamate synthase, beta subunit [Thermotoga maritima]
Length = 618
Score = 241 bits (609), Expect = 1e-62
Identities = 169/478 (35%), Positives = 259/478 (53%), Gaps = 42/478 (8%)
Query: 7 ERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
ER+ P E RI+ F E+ GY+ E A++EA RC++C C CP ++DIP +I
Sbjct: 165 ERIEMPVEPPEVRIKSFIEIVKGYSREQAMQEAARCVEC----GVCTYTCPEHMDIPQYI 220
Query: 67 RALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLE 126
+++ E+ + E L+ ++ +N L + GRVC +CE C VG G+PV I L+
Sbjct: 221 KSVYEDN------LEEGLRWLYRTNPLSMVCGRVCTH--RCETACSVGVRGEPVAIQWLK 272
Query: 127 RFVADYA--RQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
R++ D ++G E+L+ + +R GK V +IG+GPAGL A LA MGY+VTI+E
Sbjct: 273 RYIVDSIPLERYG---EILDIKP---ERKGKSVGIIGSGPAGLAAAYFLATMGYDVTIYE 326
Query: 185 ALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIF 244
+ +PGGV+ YGIP++RLP E + K++ ++ LGVKI N V + V+FE++R+ D +F
Sbjct: 327 SESKPGGVMRYGIPKYRLPDEALDKDIAFIEALGVKILLNTRVVQDVSFEDVRKRHDVVF 386
Query: 245 IGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNT 304
+ TG G R PG + + A L + +++ Y + P + +R+ VIG GN
Sbjct: 387 LATGFGLGRSTGVPGTDHPDVKQA---LPLLKMIRDYLRGDGPKP-PVPERLVVIGGGNV 442
Query: 305 AMDAARSALRLGAEVWILYRRTR----------KEMTAREEEIKHAEEEGVKFMFLVSPK 354
AMD +RS RL ++ Y R ++M A EEI+ A EEG+ P
Sbjct: 443 AMDISRSMARL---QFMEYGRVNVQVLSLEGCFEDMPADMEEIEEALEEGIVINPGWGPM 499
Query: 355 RFIGDENGNLKAIELEKMKLGEPDETGRRRP-IPTGETFVMEFDTAIIAIGQTPNKTFLQ 413
+ EN +K ++ +K + D GR P E +E D + AIGQ P+ ++L
Sbjct: 500 EVV-IENDRIKGVKFKKC-VSVFDGEGRFNPQFDEKEQIFVEADMVVEAIGQAPDYSYLP 557
Query: 414 TVPELKVD-EKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYL 470
K++ +GRI +E TS+ +FAGGD + G +I + DG AAK I YL
Sbjct: 558 EEIRSKLEFFRGRIKTNEYNQTSVEWLFAGGDIVHG-PDIIHGIADGYAAAKGIDMYL 614
>pir||T34868 probable glutamate synthase small chain - Streptomyces coelicolor
>gi|5738513|emb|CAB52860.1| (AL109849) putative
glutamate synthase small subunit [Streptomyces
coelicolor A3(2)]
Length = 487
Score = 231 bits (584), Expect = 1e-59
Identities = 155/482 (32%), Positives = 249/482 (51%), Gaps = 48/482 (9%)
Query: 14 RSVEERIRDFNEVNL-GYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALREN 72
R V+ER++D+NEV + G + ++A RC+ C + C GCP+ IP +
Sbjct: 18 RPVDERVKDWNEVYVPGSLLPIISKQASRCMDCGIPF--CHNGCPLGNLIPEW------- 68
Query: 73 RDDPDKAVRE----ALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERF 128
D A RE A + + +N+ P TGR+CP CE CV+G PV I +E
Sbjct: 69 ---NDYAYREDWSAASERLHATNNFPEFTGRLCPAP--CESACVLGINQPPVTIKNVEVS 123
Query: 129 VADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHE 188
+ D A + G + E++ +GK VAVIG+GPAGL A +L + G+ V ++E
Sbjct: 124 IIDKAWETGDVAPRIPERL-----SGKTVAVIGSGPAGLAAAQQLTRAGHTVAVYERADR 178
Query: 189 PGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTG 248
GG+L YGIPEF++ K + + +E+++ G + T V +G+ + +L++ +DA+ I G
Sbjct: 179 VGGLLRYGIPEFKMEKRHINRRIEQMRAEGTRFRTGVEIGRDLKATDLKKRYDAVVIAAG 238
Query: 249 AGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKI-GKRVAVIGAGNTAMD 307
+ T R P PG LNGI+ A E+L N K + PI GK V VIG G+T D
Sbjct: 239 STTARDLPVPGRELNGIHQAMEYLPLAN--KVQEGDYVAPPITAEGKHVVVIGGGDTGAD 296
Query: 308 AARSALRLGA----EVWILYRRTRKEMTAREE--------EIKHAEEEGVKFMFLVSPKR 355
+A R GA ++ I+ R + R+ ++ A EEG + ++ VS
Sbjct: 297 CVGTAHRQGAASVTQLEIMPRPGEERDAVRQPWPTFPMLYKVTSAHEEGGERVYAVSTTH 356
Query: 356 FIGDENGNLKAIELEKMKLGE---PDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFL 412
F GDE+GN++ + + +++ + + G R IP + T + T L
Sbjct: 357 FEGDEDGNVQWLHMSEVEFVDGKLTSKPGTERKIPA------QLVTLAMGFTGTDKDNGL 410
Query: 413 QTVPELKVDEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSS 472
L++DE+G I D + T++PGVF GDA RG++ ++ A+ +GR AA+ ++L+
Sbjct: 411 VDQFGLELDERGNIARDADFQTNVPGVFVAGDAGRGQSLIVWAIAEGRSAARGADRFLTG 470
Query: 473 SS 474
+S
Sbjct: 471 AS 472
>pir||B29617 glutamate synthase (NADPH) (EC 1.4.1.13) small chain - Escherichia
coli >gi|146209|gb|AAA23905.1| (M18747) glutamate
synthase small subunit [Escherichia coli]
Length = 471
Score = 231 bits (582), Expect = 2e-59
Identities = 148/471 (31%), Positives = 237/471 (49%), Gaps = 20/471 (4%)
Query: 7 ERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFI 66
+RV P++ ++ R +F E+ ++ R + Y C CPV+ IP ++
Sbjct: 12 QRVDPPKKPLKIRKIEFVEIYEPFSEARPKRRLTAACRAANPY--CEWKCPVHNYIPNWL 69
Query: 67 RALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLE 126
+ E R + EA ++ +N+LP + GRVCPQ+ CEG C + V IG ++
Sbjct: 70 KLANEGR------IFEAAELSHQTNTLPEVCGRVCPQDRLCEGSCTLNDEFGAVTIGNIK 123
Query: 127 RFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEAL 186
R++ D A + G ++ G+K+ GK+VA+IGAGPAGL CA L + G + F+
Sbjct: 124 RYINDKAFEMGWRPDM-----SGVKQTGKKVAIIGAGPAGLACADVLTRNGVKAVCFDRH 178
Query: 187 HEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIG 246
E GG+L +GIP F+L KE++ + E +G++ + N VG+ V ++L ++DA+F+G
Sbjct: 179 PEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLG 238
Query: 247 TGAGTPRIYPWPGVNLNGIYS--ANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNT 304
G + +G + T +LM + + GKRV V+G G+T
Sbjct: 239 VGTYQSMRGGLENEDADGCTQRCRSSSPTPNSLMGFGETRDEPFVSMEGKRVVVLGGGDT 298
Query: 305 AMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGN 363
AMD R+++R GA +V YRR + M E+K+A EEGV+F F V P + NG
Sbjct: 299 AMDCVRTSVRQGANDVTCAYRRDEENMPGSRREVKNAREEGVEFKFNVQPLGIEVNGNGK 358
Query: 364 LKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEK 423
+ +++ + ++GEPD R + P+ +++D +
Sbjct: 359 VSGVKMVRTEMGEPDAKASPRGDRCRFRTYRTGRCGDHGVWFRPHNMEWLAKHSVELDSQ 418
Query: 424 GRIIV----DENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYL 470
GRII D TS P +FAGGD +RG V+ A+ +GRKAA I +L
Sbjct: 419 GRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWL 469
>pir||F65071 hypothetical protein b2878 - Escherichia coli (strain K-12)
>gi|887828|gb|AAA83059.1| (U28375) was o492p and o826p
before splice [Escherichia coli]
>gi|1789243|gb|AAC75916.1| (AE000371) putative
oxidoreductase, Fe-S subunit [Escherichia coli K12]
Length = 1032
Score = 229 bits (577), Expect = 7e-59
Identities = 159/422 (37%), Positives = 233/422 (54%), Gaps = 37/422 (8%)
Query: 50 APCIKGCPVNIDIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEG 109
APC+ C + DIP +IR L E+R +AL++I+ N+LPAITG +C + QC+
Sbjct: 458 APCVTACAIKQDIPEYIRLLGEHR------YADALELIYQRNALPAITGHIC--DHQCQY 509
Query: 110 VCVVGKVGDPVNIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKR--VAVIGAGPAGL 167
C +NI +L++ A + G ++ +++ +G R VAVIGAGPAGL
Sbjct: 510 NCTRLDYDSALNIRELKKV----ALEKGWDE--YKQRWHKPAGSGSRHPVAVIGAGPAGL 563
Query: 168 TCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLV 227
LA+ G+ VT+FE GGV+ IP+FR+P E+++ +++ + GVK E
Sbjct: 564 AAGYFLARAGHPVTLFEREANAGGVVKNIIPQFRIPAELIQHDIDFVAAHGVKFEYG--C 621
Query: 228 GKTVTFEELREE-FDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEY 286
+T E+L+ + F + I TG G N N ++ + FL N
Sbjct: 622 SPDLTIEQLKNQGFHYVLIATGTDKNSGVKLAGDNQN-VWKSLPFLREYN---------K 671
Query: 287 DTPIKIGKRVAVIGAGNTAMDAARSALRL-GAE-VWILYRRTRKEMTAREEEIKHAEEEG 344
T +K+GK V V+GAGNTAMD AR+ALR+ G E I+YRR+ +EM A EE + A +G
Sbjct: 672 GTALKLGKHVVVVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAWREEYEEALHDG 731
Query: 345 VKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIG 404
V+F FL +P+RF D +G L L M LGEPDE GRRRP+ T ET + D+ I AIG
Sbjct: 732 VEFRFLNNPERF--DADGTL---TLRVMSLGEPDEKGRRRPVETNETVTLLVDSLITAIG 786
Query: 405 QTPNKTFLQTVPELKVDEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAK 464
+ + L + + +D+ G VD N T + VF GD RG ++++ A+G R+A
Sbjct: 787 EQQDTEALNAM-GVPLDKNGWPDVDHNGETRLTDVFMIGDVQRGPSSIVAAVGTARRATD 845
Query: 465 AI 466
AI
Sbjct: 846 AI 847
>pir||G83590 probable oxidoreductase PA0440 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9946298|gb|AAG03829.1|AE004481_5
(AE004481) probable oxidoreductase [Pseudomonas
aeruginosa]
Length = 455
Score = 226 bits (569), Expect = 6e-58
Identities = 157/468 (33%), Positives = 239/468 (50%), Gaps = 33/468 (7%)
Query: 9 VPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRA 68
+P P+ + F ++ A E+ RCL C APC+ CP IDIPGFIR+
Sbjct: 8 LPRPDAGADTLAERFADLAPPLNARQAALESARCLYCYD--APCVNACPTEIDIPGFIRS 65
Query: 69 LRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD--PVNIGKLE 126
+ + V+ A + I +N L RVCP E C+ CV + PV IG+L+
Sbjct: 66 IAQEN------VQGAAQKILSANILGGSCARVCPTEILCQRACVRNNAQECAPVLIGQLQ 119
Query: 127 RFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEAL 186
R+ D+A G + E + GKR+AV+GAGPAGL+CA LA G++V +FEA
Sbjct: 120 RYALDHA---GFD----EHPFKRSPATGKRIAVVGAGPAGLSCAHRLAMHGHDVVLFEAR 172
Query: 187 HEPGGVLAYGIPEFRLPKEIVKKEVEKLKRL-GVKIETNVLVGKTVTFEELREEFDAIFI 245
+ GG+ YGI ++L + ++EVE L ++ G+++ +G + L +E+DA+F+
Sbjct: 173 TKAGGLNEYGIARYKLVDDFARREVEFLLQIGGIELRHGQRLGDNLALGALHDEYDAVFL 232
Query: 246 GTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTA 305
G G + + G+ +A +++ + D P + R VIGAGNTA
Sbjct: 233 GIGLAASKRLGLEDEDAPGLLAATDYIRELRQSDDL----LDLP--VADRCIVIGAGNTA 286
Query: 306 MDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNL 364
+D A RLGA +V ++YRR +EM A E + A+ V+ + P+R + DE+G +
Sbjct: 287 IDMAVQMSRLGARDVNLVYRRGFEEMGATGHEQEIAKASQVRLLTWARPERVLLDEHGRV 346
Query: 365 KAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKG 424
+ + + +L E GR TGE F + D AIGQ L ++ G
Sbjct: 347 RGMRFARTRL----ENGRLG--DTGEHFELAADAIFKAIGQAFEGASLGDPLAAQLRRDG 400
Query: 425 -RIIVDENLMTSIPGVFAGGDAIR-GEATVILAMGDGRKAAKAIHKYL 470
RI VD + TSIPG++AGGD + GE + A+ G+ AA+AIH L
Sbjct: 401 ERIQVDGQMRTSIPGIYAGGDCVALGEDLTVQAVQHGKLAAEAIHAQL 448
>pir||B75551 glutamate synthase, small subunit - Deinococcus radiodurans
(strain R1) >gi|6457850|gb|AAF09769.1|AE001880_6
(AE001880) glutamate synthase, small subunit
[Deinococcus radiodurans]
Length = 488
Score = 220 bits (555), Expect = 3e-56
Identities = 160/500 (32%), Positives = 250/500 (50%), Gaps = 52/500 (10%)
Query: 4 LIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIP 63
L + RV ++ R++ ++E L A +A RC+ C + C GCPVN IP
Sbjct: 8 LEQPRVKEQYAPIDARLKHYHEFMLPLDSASARLQATRCMDCGIPF--CNNGCPVNNIIP 65
Query: 64 GFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIG 123
F + E D KA AL ++ +N+ P TGR+CP CE C + DPV I
Sbjct: 66 DFNNLVFE---DDWKA---ALDVLHATNNFPEFTGRICPAP--CEAACTLNISEDPVGIK 117
Query: 124 KLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIF 183
+E + + Q G E + GK+VAV+G+GPAGL A +LA+ G++VT+F
Sbjct: 118 SIELAIIERGWQEGWVRPTPAEV-----KTGKKVAVVGSGPAGLAAAQQLARAGHDVTVF 172
Query: 184 EALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVG-------------KT 230
E GG++ YGIP+F+L K + + +E+++ GV T VLVG +
Sbjct: 173 EKNDRVGGLVRYGIPDFKLDKSHIDRRIEQMQAEGVTFRTGVLVGDWDENSKITNLSKER 232
Query: 231 VTFEELREEFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPI 290
VT ELRE+FDA+ + G+ TPR P PG LNGI+ A EFL + N + A ++ I
Sbjct: 233 VTPAELREQFDAVVLAGGSETPRDLPAPGRELNGIHYAMEFLPQQNRVNA--GDKFKGQI 290
Query: 291 KI-GKRVAVIGAGNTAMDAARSALRLGAEVWILY-------RRTRKEMT----AREEEIK 338
+ GK V VIG G+T D ++ R GA + + K +T +
Sbjct: 291 RADGKHVVVIGGGDTGSDCVGTSNRHGAAGVTQFEVMPQPPEQENKPLTWPYWPMKLRTS 350
Query: 339 HAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDT 398
+ EEG F ++ K FIG + G + + ++++ + G+ IP G + D
Sbjct: 351 TSHEEGAVREFAIATKEFIG-KGGKVTGVRTVRVEM----KDGKLEEIP-GSEETHKADL 404
Query: 399 AIIAIGQTPNKTFLQTVPELKVDEKGRIIVDE----NLMTSIPGVFAGGDAIRGEATVIL 454
++A+G T + + D +G ++ +TS+PGVFA GD RG++ V+
Sbjct: 405 VLLAMGFTNPMQSVLDAFGVDKDPRGNVLAGTEEHGGYLTSVPGVFAAGDMRRGQSLVVW 464
Query: 455 AMGDGRKAAKAIHKYLSSSS 474
A+ +GR+AA+A+ ++L S
Sbjct: 465 AIREGRQAARAVDQFLMGES 484
>dbj|BAA35120.1| (AB008845) NADH dependent Glutamate Synthase [Oryza sativa]
Length = 2166
Score = 219 bits (552), Expect = 6e-56
Identities = 162/493 (32%), Positives = 248/493 (49%), Gaps = 44/493 (8%)
Query: 7 ERVPTPERSVEERIRDFNEVNL-GYTWELALREAERCLQCPKEYA---PCIKGCPVNIDI 62
ER R ER++D+ EV + L ++ RC+ C + GCP+ I
Sbjct: 1667 ERESISYRDPNERVKDWKEVAIESVPGPLLNTQSARCMDCGTPFCHQESSGAGCPLGNKI 1726
Query: 63 PGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNI 122
P F + +NR REAL + ++N+ P TGRVCP CEG CV+G + +PV+I
Sbjct: 1727 PEFNELVHQNR------WREALDRLLETNNFPEFTGRVCPAP--CEGSCVLGIIENPVSI 1778
Query: 123 GKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTI 182
+E + D G E+ + + ++R GK+VA+IG+GPAGL A +L KMG+ VT+
Sbjct: 1779 KSIECAIID----KGFEEGWMVPR-PPLQRTGKKVAIIGSGPAGLAAADQLNKMGHFVTV 1833
Query: 183 FEALHEPGGVLAYGIPEFRLPK-EIVKKEVEKLKRLGVKIETNVLVGK--TVTFEELREE 239
FE GG++ YG+P + K EIV++ V + G+ N VG + E LR E
Sbjct: 1834 FERADRIGGLMMYGVPNMKTDKIEIVQRRVNLMAEEGITFVVNANVGSDPLYSIERLRSE 1893
Query: 240 FDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFL---TRINLMKAYKFPEYDTPIKIGKRV 296
DA+ + GA PR PG L+G++ A EFL T+ L + Y + GK+V
Sbjct: 1894 NDAVILACGATKPRDLGIPGRELSGVHFAMEFLHANTKSLLDSNLEDGRYIS--AKGKKV 1951
Query: 297 AVIGAGNTAMDAARSALRLGAEVWILYRRTRKEMTAREEE-----------IKHAEEE-G 344
VIG G+T D +++R G + K + R + + + +E
Sbjct: 1952 VVIGGGDTGTDCIGTSIRHGCTSIVNLELLTKPPSKRAADNPWPQWPRIFRVDYGHQEAS 2011
Query: 345 VKF-----MFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTA 399
KF + V KRFIGDENGN+KA+E+ ++K + D + + I G +E D
Sbjct: 2012 SKFGNDPRTYEVLTKRFIGDENGNVKALEVVRVKWEKVDGRFQLKEI-EGSNETIEADLV 2070
Query: 400 IIAIGQTPNKTFLQTVPELKVDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGD 458
++A+G + + L+ D + N TS+ G+FA GD RG++ V+ A+ +
Sbjct: 2071 LLAMGFLGPEATIAEKLGLEKDNRSNFKAQFGNFATSVDGIFAAGDCRRGQSLVVWAITE 2130
Query: 459 GRKAAKAIHKYLS 471
GR+AA A+ KYLS
Sbjct: 2131 GRQAAAAVDKYLS 2143
>pir||G70655 probable small subunit of NADH-dependent glutamate synthase -
Mycobacterium tuberculosis (strain H37RV)
>gi|1781098|emb|CAB06232.1| (Z83864) gltD [Mycobacterium
tuberculosis]
Length = 488
Score = 218 bits (549), Expect = 1e-55
Identities = 151/477 (31%), Positives = 243/477 (50%), Gaps = 37/477 (7%)
Query: 14 RSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENR 73
R V R+RD+ EV + E ++A RC+ C + C GCP+ IP + +R R
Sbjct: 19 RPVPLRLRDWREVYEEFDNESLRQQATRCMDCGIPF--CHNGCPLGNLIPEWNDLVRRGR 76
Query: 74 DDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFVADYA 133
R+A++ + +N+ P TGR+CP CE CV+G DPV I ++E + D A
Sbjct: 77 ------WRDAIERLHATNNFPDFTGRLCPAP--CEPACVLGINQDPVTIKQIELEIIDKA 128
Query: 134 RQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVL 193
G ++ G+ VAV+G+GPAGL A +L + G+ VT+FE GG+L
Sbjct: 129 FDEGWVQPRPPRKL-----TGQTVAVVGSGPAGLAAAQQLTRAGHTVTVFEREDRIGGLL 183
Query: 194 AYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPR 253
YGIPEF++ K + + +++++ G + V VG ++ E+LR +FDA+ + GA R
Sbjct: 184 RYGIPEFKMEKRHLDRRLDQMRSEGTEFRPGVNVGVDISAEKLRADFDAVVLAGGATAWR 243
Query: 254 IYPWPGVNLNGIYSANEFLTRINLMKA---YKFPEYDTPIKI-GKRVAVIGAGNTAMDAA 309
P PG L G++ A EFL N ++ + PI GK+V +IG G+T D
Sbjct: 244 ELPIPGRELEGVHQAMEFLPWANRVQEGDDVLDEDGQPPITAKGKKVVIIGGGDTGADCL 303
Query: 310 RSALRLGAEVWILYRRTRKEMTAREE-----------EIKHAEEEGVKFMFLVSPKRFIG 358
+ R GA + + AR E + A EEG + +F V+ + F+G
Sbjct: 304 GTVHRQGAIAVHQFEIMPRPPDARAESTPWPTYPLMYRVSAAHEEGGERVFSVNTEAFVG 363
Query: 359 DENGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQT-PNKTFLQTVPE 417
+ G + A+ ++ + + G+ + G F +E D ++A+G P + L T
Sbjct: 364 TD-GRVSALRAHEVTMLD----GKFVKV-EGSDFELEADLVLLAMGFVGPERAGLLTDLG 417
Query: 418 LKVDEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSSSS 474
+K E+G + ++ TS+PGVF GD RG++ ++ A+ +GR AA A+ +YL SS
Sbjct: 418 VKFTERGNVARGDDFDTSVPGVFVAGDMGRGQSLIVWAIAEGRAAAAAVDRYLMGSS 474
>dbj|BAA97323.1| (AB020754) NADH-dependent glutamate synthase [Arabidopsis thaliana]
Length = 2216
Score = 214 bits (540), Expect = 1e-54
Identities = 158/494 (31%), Positives = 251/494 (49%), Gaps = 43/494 (8%)
Query: 7 ERVPTPERSVEERIRDFNEV-NLGYTWELALREAERCLQCPKEYAPCIK-GCPVNIDIPG 64
ER R R+ D+NEV L ++ RC+ C + GCP+ IP
Sbjct: 1717 EREGVKYRDPNVRLNDWNEVMEESKPGPLLTTQSARCMDCGTPFCHQENSGCPLGNKIPE 1776
Query: 65 FIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGK 124
F + +NR +EAL + ++N+ P TGRVCP CEG CV+G + +PV+I
Sbjct: 1777 FNELVYQNR------WQEALNRLLETNNFPEFTGRVCPAP--CEGSCVLGIIENPVSIKS 1828
Query: 125 LERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
+E + D A + G +KR GK+VA+IG+GPAGL A +L KMG+ VT++E
Sbjct: 1829 IECAIIDKAFEEG-----WMVPRPPLKRTGKKVAIIGSGPAGLAAADQLNKMGHLVTVYE 1883
Query: 185 ALHEPGGVLAYGIPEFRLPK-EIVKKEVEKLKRLGVKIETNVLVGK--TVTFEELREEFD 241
GG++ YG+P + K ++V++ V+ + + G+ N +GK + + + L+EE D
Sbjct: 1884 RSDRIGGLMMYGVPNMKTDKIDVVQRRVDLMTKEGINFVVNANIGKDPSYSLDGLKEEND 1943
Query: 242 AIFIGTGAGTPRIYPWPGVNLNGIYSANEFL---TRINLMKAYKFPEYDTPIKIGKRVAV 298
AI + G+ PR P PG +L+G++ A EFL T+ L ++ Y + GK+V V
Sbjct: 1944 AIVLAVGSTKPRDLPVPGRDLSGVHFAMEFLHANTKSLLDSNHEDGNYIS--AKGKKVVV 2001
Query: 299 IGAGNTAMDAARSALRLGAEVWILYRRTRKEMTAREE-----------EIKHAEEEG-VK 346
IG G+T D +++R G + + + R I + +E K
Sbjct: 2002 IGGGDTGTDCIGTSIRHGCTNIVNLELLPQPPSTRAPGNPWPQWPRVFRIDYGHQEATTK 2061
Query: 347 F-----MFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGR-RRPIPTGETFVMEFDTAI 400
F + V KRFIGD+NGN+K +EL ++ E DETGR + G ++E D
Sbjct: 2062 FGKDPRTYEVLTKRFIGDDNGNVKGLELVRVS-WEKDETGRFQFKEIEGSEEIIEADLVF 2120
Query: 401 IAIGQTPNKTFLQTVPELKVDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDG 459
+A+G + L L+ D + + T++ GVFA GD RG++ V+ A+ +G
Sbjct: 2121 LAMGFLGPEPTLAEKLGLECDNRSNFKAEYGRFSTTVEGVFAAGDCRRGQSLVVWAISEG 2180
Query: 460 RKAAKAIHKYLSSS 473
R+AA + K+L+ +
Sbjct: 2181 RQAADQVDKFLTKT 2194
>sp|Q03460|GLSN_MEDSA GLUTAMATE SYNTHASE [NADH] PRECURSOR (NADH-GOGAT)
>gi|484529|pir||JQ1977 glutamate synthase (NADH) (EC
1.4.1.14) precursor [validated] - alfalfa
>gi|166412|gb|AAB46617.1| (L01660) NADH-glutamate
synthase [Medicago sativa]
Length = 2194
Score = 212 bits (534), Expect = 7e-54
Identities = 159/496 (32%), Positives = 249/496 (50%), Gaps = 49/496 (9%)
Query: 7 ERVPTPERSVEERIRDFNEVNLGYT-WELALREAERCLQCPKEYAPCIK-GCPVNIDIPG 64
ER R R+ D+NEV + L ++ RC+ C + GCP+ IP
Sbjct: 1688 EREGVQYRDPNVRLNDWNEVMMETKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPE 1747
Query: 65 FIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGK 124
F + +NR +EAL+ + ++N+ P TGRVCP CEG CV+G + +PV+I
Sbjct: 1748 FNELVYQNR------WQEALERLLETNNFPEFTGRVCPAP--CEGSCVLGIIENPVSIKN 1799
Query: 125 LERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
+E + D A + G ++ +KR GKRVA++G+GP+GL A +L KMG+ VT+FE
Sbjct: 1800 IECAIIDKAFEEGW---MIPRP--PVKRTGKRVAIVGSGPSGLAAADQLNKMGHIVTVFE 1854
Query: 185 ALHEPGGVLAYGIPEFRLPK-EIVKKEVEKLKRLGVKIETNVLVG--KTVTFEELREEFD 241
GG++ YG+P + K +IV++ V + G+ N +G + E LREE D
Sbjct: 1855 RADRIGGLMMYGVPNMKTDKVDIVQRRVNLMAEEGINFVVNANIGLDPLYSLERLREEND 1914
Query: 242 AIFIGTGAGTPRIYPWPGVNLNGIYSANEFL---TRINLMKAYKFPEYDTPIKIGKRVAV 298
AI + GA PR P PG L+G++ A EFL T+ L + Y + GK+V V
Sbjct: 1915 AIVLAVGATKPRDLPVPGRELSGVHFAMEFLHANTKSLLDSNLQDGNYIS--AKGKKVVV 1972
Query: 299 IGAGNTAMDAARSALRLGAEV-------------------WILYRRT-RKEMTAREEEIK 338
IG G+T D +++R G W + R R + +E E K
Sbjct: 1973 IGGGDTGTDCIGTSIRHGCTAVVNLELLPQPPPTRAPGNPWPQWPRIFRVDYGHQEAETK 2032
Query: 339 HAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGR-RRPIPTGETFVMEFD 397
++ + V KRF+GDENG +K +E+ ++ E DETG+ + G ++E D
Sbjct: 2033 FGKDPRT---YEVLTKRFVGDENGVVKGLEVVRV-CWEKDETGKFQFKEIEGSEEIIEAD 2088
Query: 398 TAIIAIGQTPNKTFLQTVPELKVDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAM 456
++A+G + + ++ D + D TS+ GVFA GD RG++ V+ A+
Sbjct: 2089 LVLLAMGFLGPEATIAEKLGVERDNRSNFKADYGRFSTSVDGVFAAGDCRRGQSLVVWAI 2148
Query: 457 GDGRKAAKAIHKYLSS 472
+GR+AA + YL++
Sbjct: 2149 SEGRQAAAQVDSYLTN 2164
>gb|AAB41904.1| (L37606) NADH-dependent glutamate synthase [Medicago sativa]
Length = 2194
Score = 210 bits (529), Expect = 3e-53
Identities = 158/496 (31%), Positives = 248/496 (49%), Gaps = 49/496 (9%)
Query: 7 ERVPTPERSVEERIRDFNEVNLGYT-WELALREAERCLQCPKEYAPCIK-GCPVNIDIPG 64
ER R R+ D+NEV + L ++ RC+ C + GCP+ IP
Sbjct: 1688 EREGVQYRDPNVRLNDWNEVMMETKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPE 1747
Query: 65 FIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGK 124
F + +NR +EAL+ + ++N+ P TGRVCP CEG CV+G + +PV+I
Sbjct: 1748 FNELVYQNR------WQEALERLLETNNFPEFTGRVCPAP--CEGSCVLGIIENPVSIKN 1799
Query: 125 LERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
+E + D A + G ++ +KR GKRVA++G+GP+GL A +L KMG+ VT+FE
Sbjct: 1800 IECAIIDKAFEEGW---MIPRP--PVKRTGKRVAIVGSGPSGLAAADQLNKMGHIVTVFE 1854
Query: 185 ALHEPGGVLAYGIPEFRLPK-EIVKKEVEKLKRLGVKIETNVLVG--KTVTFEELREEFD 241
GG++ YG+P + K +IV++ V + G+ N +G + E LREE D
Sbjct: 1855 RADRIGGLMMYGVPNMKTDKVDIVQRRVNLMAEEGINFVVNANIGLDPLYSLERLREEND 1914
Query: 242 AIFIGTGAGTPRIYPWPGVNLNGIYSANEFL---TRINLMKAYKFPEYDTPIKIGKRVAV 298
AI + GA PR P PG L+G++ A EFL T+ L + Y + GK+V V
Sbjct: 1915 AIVLAVGATKPRDLPVPGRELSGVHFAMEFLHANTKSLLDSNLQDGNYIS--AKGKKVVV 1972
Query: 299 IGAGNTAMDAARSALRLGAEV-------------------WILYRRT-RKEMTAREEEIK 338
IG G+T D +++R G W + R R + +E E K
Sbjct: 1973 IGGGDTGTDCIGTSIRHGCTAVVNLELLPQPPPTRAPGNPWPQWPRIFRVDYGHQEAETK 2032
Query: 339 HAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGR-RRPIPTGETFVMEFD 397
++ + V KRF+GDENG +K +E+ ++ E DETG+ + G ++E D
Sbjct: 2033 FGKDPRT---YEVLTKRFVGDENGVVKGLEVVRV-CWEKDETGKFQFKEIEGSEEIIEAD 2088
Query: 398 TAIIAIGQTPNKTFLQTVPELKVDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAM 456
++A+G + + ++ D + D TS+ GVFA GD RG++ V+ A+
Sbjct: 2089 LVLLAMGFLGPEATIAEKLGVERDNRSNFKADYGRFSTSVDGVFAAGDCRRGQSLVVWAI 2148
Query: 457 GDGRKAAKAIHKYLSS 472
+GR+ A + YL++
Sbjct: 2149 SEGRQRAAQVDSYLTN 2164
>pir||A64983 hypothetical protein b2146 - Escherichia coli (strain K-12)
>gi|1788468|gb|AAC75207.1| (AE000303) putative
oxidoreductase [Escherichia coli K12]
Length = 412
Score = 210 bits (528), Expect = 4e-53
Identities = 147/451 (32%), Positives = 229/451 (50%), Gaps = 50/451 (11%)
Query: 24 NEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDDPDKAVREA 83
+E+ +T LA++EA RCL C APC + CP D FIR++ + A
Sbjct: 8 DELTPAFTSLLAIKEASRCLLCHD--APCSQACPAQTDPGKFIRSIYFRN------FKGA 59
Query: 84 LKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFVADYARQHGIEDELL 143
+ I ++N+L A+ RVCP E C+ C V P++IG+L+RFV D+ +Q G +
Sbjct: 60 AETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQRFVTDFEQQTG-----M 114
Query: 144 EEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLP 203
E G K GK VA+IGAGPAGL + L GY+VTI+E PGG L GIP+FRLP
Sbjct: 115 EIYQPGTKTLGK-VAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPGGWLRNGIPQFRLP 173
Query: 204 KEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPGVNLN 263
+ ++ E+ +++++GV I+ N VG T+T E+L+ E A+ + G + P
Sbjct: 174 QSVLDAEIARIEKMGVTIKCNNEVGNTLTLEQLKAENRAVLVTVGLSSGSGLP------- 226
Query: 264 GIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRLGAE-VWIL 322
++ ++ ++ ++ + + D I I + +IG G+ AMD A + LG + V +
Sbjct: 227 -LFEHSDVEIAVDFLQRARQAQGD--ISIPQSALIIGGGDVAMDVASTLKVLGCQAVTCV 283
Query: 323 YRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGR 382
R E A E+E A E GV + +P G++ + + ++L
Sbjct: 284 AREELDEFPASEKEFTSARELGVSIIDGFTPVAVEGNK------VTFKHVRL-------- 329
Query: 383 RRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDENLMTSIPGVFAG 442
+GE M D I+A+GQ L EL + + I +N T P VFA
Sbjct: 330 -----SGE-LTMAADKIILAVGQHAR---LDAFAEL--EPQRNTIKTQNYQTRDPQVFAA 378
Query: 443 GDAIRGEATVILAMGDGRKAAKAIHKYLSSS 473
GD + G+ TV+ A+ G++AA+AIH YL +
Sbjct: 379 GDIVEGDKTVVYAVKTGKEAAEAIHHYLEGA 409
>dbj|BAB05448.1| (AP001513) glutamate synthase (small subunit) [Bacillus halodurans]
Length = 495
Score = 210 bits (528), Expect = 4e-53
Identities = 159/498 (31%), Positives = 244/498 (48%), Gaps = 46/498 (9%)
Query: 7 ERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIK--------GCPV 58
+R P++ ER +++ E L ++ RC+ C + GCPV
Sbjct: 11 KRETPPKKDPFERSKNWQEFTLLMPESALRQQGARCMDCGVPFCQTGTSMDGSGEIGCPV 70
Query: 59 NIDIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD 118
IP + + +EAL+ + +N+ P TGRVCP CEG C V D
Sbjct: 71 YNLIPEWNDLVYRGH------WKEALERLHKTNNFPEFTGRVCPAP--CEGSCTVAISDD 122
Query: 119 PVNIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY 178
V I +E + + Q G ++ R R GK+VAV+G+GPAGL AA+L K G+
Sbjct: 123 AVAIKSMEFHIVERGFQEGW---IVPNPPRS--RTGKKVAVVGSGPAGLAAAAQLNKAGH 177
Query: 179 EVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELRE 238
VT+FE GG+L YGIP+ +LP +V++ + LK G++ TNV +GK V+ ++L++
Sbjct: 178 WVTVFEREDRIGGLLTYGIPDVKLPYHVVERRINLLKEEGIEFRTNVEIGKDVSAKQLKD 237
Query: 239 EFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFL---TRINLMKAYKFPEYDTPIKIGKR 295
+FDA+ + TGA PR G L GI+ A +FL T+ L ++ Y + GK
Sbjct: 238 DFDAVVLCTGATKPRDVNVKGRELKGIHFAMDFLTANTKSLLNSNHQDGNYIS--AKGKH 295
Query: 296 VAVIGAGNTAMDAARSALRLGAEVWILYRRTRKEMTAREEE-------IKHAEEEGVK-- 346
V VIG G+T D +++R GA+ + R++ R + I H E+G K
Sbjct: 296 VVVIGGGDTGADCITTSVRHGAKSITQFDINREKSNERPDNNPWPLFPIVHTVEDGHKEA 355
Query: 347 --------FMFLVSPKRFIGDENGNLKAIELEKMKLG-EPDETGRRRPIPTGETFVMEFD 397
+ V +F+GD G++K I ++ PD + R IP G V D
Sbjct: 356 AAVYGKDPRAYQVMTTKFVGDAEGHVKEIHTISVETTVHPDGSKTRVEIP-GTEKVWPAD 414
Query: 398 TAIIAIGQTPNKTFLQTVPELKVDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAM 456
+A+G T + L EL+ D + I + TS+ GVFA GD RG++ V+ A+
Sbjct: 415 LVFLAVGFTGPEEQLVRELELETDTRSNIKAEYGKYETSLEGVFAAGDNRRGQSLVVWAI 474
Query: 457 GDGRKAAKAIHKYLSSSS 474
+GR+AA+ KYL +S
Sbjct: 475 HEGREAARECDKYLMGAS 492
>gb|AAC17982.1| (AF031406) NADPH dependent glutamate synthase small subunit
homolog838 [Rhodobacter capsulatus]
Length = 443
Score = 209 bits (526), Expect = 6e-53
Identities = 153/436 (35%), Positives = 215/436 (49%), Gaps = 39/436 (8%)
Query: 39 AERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITG 98
A RC C + APC CP +ID+P FIR + P+ A R L N + +
Sbjct: 40 AARCYFCAE--APCTTACPSDIDVPLFIRQILTGT--PEAAARTILS----QNIMGGMCA 91
Query: 99 RVCPQEDQCEGVCV-VGKVGDPVNIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRV 157
RVCP E CEG CV G PV IG L+RF D + G+ R K V
Sbjct: 92 RVCPTETLCEGACVREAAEGMPVEIGALQRFATDRLQAAGVHP------FTRAPRTEKSV 145
Query: 158 AVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRL 217
AV+GAGPAGL CA LA +G+EVT+++A +PGG+ YGI ++ P +EV L ++
Sbjct: 146 AVVGAGPAGLACAHRLAMLGHEVTVYDARLKPGGLNEYGIAAYKAPGGFAAREVAWLLQI 205
Query: 218 -GVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRIN 276
G+ + N +G+ + +L E DA+F+G G PG A EF+ +
Sbjct: 206 GGIAVLENWKLGRNGSVADLLAEHDAVFLGMGLAGVNALTIPGA--EHATPATEFIAHLR 263
Query: 277 LMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRLGAE-VWILYRRTRKEMTAREE 335
+ +G+RV VIG G TA+DAA A LGAE I+YRR++ EM A
Sbjct: 264 QAGDL------ATVPVGRRVVVIGGGMTAVDAAVQAKLLGAETASIVYRRSQAEMPASAH 317
Query: 336 EIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRPIPTGETFVME 395
E +HA++ GV+ + +P D+ G E+E + ET + + +T ++
Sbjct: 318 EQEHAQKNGVRIVPNAAPVAIRKDDQG----YEVEFAR----TETQGGKLVQLDDTLRIK 369
Query: 396 FDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDENLMTSIPGVFAGGD-AIRGEATVIL 454
D AIGQT L VPE G+I +D T + V+AGGD A GE +
Sbjct: 370 ADQIFTAIGQT-----LGPVPEGLTITGGKIEIDAQGRTGMAHVWAGGDCATGGEDLTVT 424
Query: 455 AMGDGRKAAKAIHKYL 470
A+ GR AA+ IH +L
Sbjct: 425 AVAQGRDAAEDIHAFL 440
>sp|Q28007|DPYD_BOVIN DIHYDROPYRIMIDINE DEHYDROGENASE [NADP+] (DPD) (DIHYDROURACIL
DEHYDROGENASE) (DIHYDROTHYMINE DEHYDROGENASE)
>gi|677951|gb|AAB40985.1| (U20981) dihydropyrimidine
dehydrogenase [Bos taurus]
Length = 1025
Score = 207 bits (522), Expect = 2e-52
Identities = 159/474 (33%), Positives = 248/474 (51%), Gaps = 36/474 (7%)
Query: 16 VEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDD 75
+E D LG ALREA RCL+C APC K CP N+DI FI ++
Sbjct: 55 LENNFDDIKHTTLGERG--ALREAMRCLKCAD--APCQKSCPTNLDIKSFITSIS----- 105
Query: 76 PDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD-PVNIGKLERFVADYAR 134
+K A K+I+ N L G VCP D C G C + + P+NIG L+++ + +
Sbjct: 106 -NKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQYATEVFK 164
Query: 135 QHGI---EDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPG 190
I + L + + ++A++GAGPA ++CA+ LA++GY ++TIFE G
Sbjct: 165 AMNIPQIRNPSLPPPEKMPEAYSAKIALLGAGPASISCASFLARLGYNDITIFEKQEYVG 224
Query: 191 GVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKT-----VTFEELREE-FDAIF 244
G+ IP+FRLP ++V E+E +K LGVKI + GK+ +T L+EE + A F
Sbjct: 225 GISTSEIPQFRLPYDVVNFEIELMKDLGVKI----ICGKSLSVNDITLSTLKEEGYKAAF 280
Query: 245 IGTGAGTP-RIYPWPGVNLN-GIYSANEFLTRI-NLMKAYKFPEYDTPIKIGKRVAVIGA 301
IG G P + + + G+ + G Y++ +FL + KA + + I V V+GA
Sbjct: 281 IGIGLPEPKKDHIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLLSIRGTVIVLGA 340
Query: 302 GNTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
G+TA D A SALR GA V+I++R+ + A EE++ A EE +F+ +SP++ I +
Sbjct: 341 GDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEVELAREEKCEFLPFLSPRKVI-VK 399
Query: 361 NGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQT-PNKTFLQTVPELK 419
G + A++ + E DETG+ + ++ D I A G + + + +K
Sbjct: 400 GGRIVAMQFVRT---EQDETGKWNE-DGDQIACLKADVVISAFGSVLSDPKVKEALSPIK 455
Query: 420 VDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSS 472
+ VD E + TS P VFAGGD + T + A+ DG++A+ IH+Y+ S
Sbjct: 456 FNRWDLPEVDPETMQTSEPWVFAGGDVVGIANTTVEAVNDGKQASWYIHRYIQS 509
>sp|Q28943|DPYD_PIG DIHYDROPYRIMIDINE DEHYDROGENASE [NADP+] PRECURSOR (DPD)
(DIHYDROURACIL DEHYDROGENASE) (DIHYDROTHYMINE
DEHYDROGENASE) >gi|1082961|pir||B54718 dihydropyrimidine
dehydrogenase (NADP+) (EC 1.3.1.2) - pig
>gi|558307|gb|AAA57475.1| (U09179) dihydropyrimidine
dehydrogenase [Sus scrofa]
Length = 1025
Score = 204 bits (513), Expect = 2e-51
Identities = 156/474 (32%), Positives = 248/474 (51%), Gaps = 36/474 (7%)
Query: 16 VEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDD 75
+E D LG ALREA RCL+C APC K CP ++DI FI ++
Sbjct: 55 LENNFGDIKHTTLGERG--ALREAMRCLKCAD--APCQKSCPTHLDIKSFITSIS----- 105
Query: 76 PDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD-PVNIGKLERFVADYAR 134
+K A K+I+ N L G VCP D C G C + + +NIG L++F ++ +
Sbjct: 106 -NKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFK 164
Query: 135 QHGI---EDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPG 190
I + L Q + + ++A++GAGPA ++CA+ LA++GY ++TIFE G
Sbjct: 165 AMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG 224
Query: 191 GVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKT-----VTFEELREE-FDAIF 244
G+ IP+FRLP ++V E+E +K LGVKI + GK+ +T L+EE + A F
Sbjct: 225 GLSTSEIPQFRLPYDVVNFEIELMKDLGVKI----ICGKSLSENEITLNTLKEEGYKAAF 280
Query: 245 IGTGAGTPRIYP-WPGVNLN-GIYSANEFLTRINLMKAYKFPEYDTPI-KIGKRVAVIGA 301
IG G P+ + G+ + G Y++ +FL + +P+ I V V+GA
Sbjct: 281 IGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGA 340
Query: 302 GNTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
G+TA D A SALR GA V++++R+ + A EE++ A+EE +F+ +SP++ I +
Sbjct: 341 GDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVI-VK 399
Query: 361 NGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQT-PNKTFLQTVPELK 419
G + A++ + E DETG+ + ++ D I A G + + + +K
Sbjct: 400 GGRIVAVQFVRT---EQDETGKWNE-DEDQIVHLKADVVISAFGSVLRDPKVKEALSPIK 455
Query: 420 VDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSS 472
+ VD E + TS P VFAGGD + T + ++ DG++A+ IHKY+ +
Sbjct: 456 FNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQA 509
>sp|Q18164|DPYD_CAEEL PROBABLE DIHYDROPYRIMIDINE DEHYDROGENASE [NADP+] (DPD)
(DIHYDROURACIL DEHYDROGENASE) (DIHYDROTHYMINE
DEHYDROGENASE) >gi|7451559|pir||T15616 hypothetical
protein C25F6.3 - Caenorhabditis elegans
>gi|1049458|gb|AAA80433.1| (U39742) coded for by C.
elegans cDNA yk28e9.3; coded for by C. elegans cDNA
yk28e9.5; coded for by C. elegans cDNA yk28h9.3; coded
for by C. elegans cDNA yk28h9.5; coded for by C. elegans
cDNA yk40e4.5; coded for by C. elegans cDNA yk5h3.5;
weakly si>
Length = 1084
Score = 203 bits (512), Expect = 3e-51
Identities = 155/473 (32%), Positives = 253/473 (52%), Gaps = 29/473 (6%)
Query: 13 ERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALREN 72
E ++ RD L AL+EA RCL+C APC K CP +D+ FI ++
Sbjct: 92 ESKLKNDFRDIKHTTLSERG--ALKEAMRCLKCAD--APCQKSCPTQLDVKSFITSIS-- 145
Query: 73 RDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVC-VVGKVGDPVNIGKLERFVAD 131
+K A + I N L G +CP D C G C + +NIG L+++ D
Sbjct: 146 ----NKNYYGAARQILSDNPLGLTCGMICPTSDLCVGSCNLQASEEGAINIGGLQQYACD 201
Query: 132 YARQHGIEDELLEEQIRGIKR--NGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHE 188
+Q + +++ +++R + + ++VA+IG GPA ++CA+ LA++GY ++TI+E
Sbjct: 202 VFKQMNVR-QIVSKEVRENRNASHKEQVALIGCGPASISCASFLARLGYTDITIYEKRAY 260
Query: 189 PGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKT-VTFEELREE-FDAIFIG 246
GG+ + IP+FRLP ++V E++ + +GV+IETN +GK +T +L+E+ A+FIG
Sbjct: 261 IGGLSSAEIPQFRLPYDVVDFEIQLARDIGVQIETNRPLGKDGLTLAKLKEQGAAAVFIG 320
Query: 247 TGAGTPRIYP-WPGVNL-NGIYSANEFLTRI-NLMKAYKFPEYDTPIKIGK-RVAVIGAG 302
G P+I P + G+ + NG Y++ +L + K TP+ + RV V+GAG
Sbjct: 321 IGNPEPKIDPLFEGLTIENGFYTSKNYLPAVAAASKPGMCGCKRTPLPTMRGRVVVLGAG 380
Query: 303 NTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDEN 361
+TAMD A SALR GA V I +R+ + A EE++ A+EE +F+ +P++ I ++
Sbjct: 381 DTAMDCATSALRCGASRVTIAFRKGFTGIRAVPEEMEAAKEEKCEFLPFSAPRK-INVKD 439
Query: 362 GNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQT-PNKTFLQTVPELKV 420
G + +IE K E D+ G+ + +++ D I A G T L + ++
Sbjct: 440 GRIVSIEFNKT---EQDDNGKWYE-DEEQIVILKCDYVISAFGSTLKEDAVLSALQPCQL 495
Query: 421 DEKGRIIVDENL-MTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSS 472
++ G I VD TS VFAGGD T + ++ DG+ AA +H+Y+ S
Sbjct: 496 NKWGGIEVDSTTQQTSEKWVFAGGDVAGVAETTVESVNDGKIAAWNMHRYIQS 548
>pir||F82085 glutamate synthase, small chain VC2374 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656944|gb|AAF95517.1|
(AE004307) glutamate synthase, small subunit [Vibrio
cholerae]
Length = 489
Score = 203 bits (511), Expect = 4e-51
Identities = 146/481 (30%), Positives = 237/481 (48%), Gaps = 50/481 (10%)
Query: 18 ERIRDFNEVNLGYTWELAL-REAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDDP 76
ERI++ E L + + ++A RC+ C + C GCP+ IP F A+ +
Sbjct: 22 ERIKNNKEFVLNQEFGKKINQQASRCMDCGVPF--CHNGCPIGNIIPEFNDAVYRD---- 75
Query: 77 DKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFVADYARQH 136
+ EA I+ +N+ P TGRVCP CE CV+G DP+ I +E+ + + A Q
Sbjct: 76 --SWEEAWNILSSTNNFPEFTGRVCPAP--CETACVLGINQDPITICNIEKTIVERAYQE 131
Query: 137 GIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYG 196
G R GK VA+IG+GPAGL A +L G+ VT+FE + GG+L +G
Sbjct: 132 GYAKPKTPRS-----RTGKTVAIIGSGPAGLAAAEQLNAAGHSVTVFERDEKVGGLLRFG 186
Query: 197 IPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYP 256
IP+F+L +++ +++ +++ GVK N +G + ++LR+EFDA+ + G+ PR
Sbjct: 187 IPDFKLGMDVIDRKINLMEQAGVKFVVNAHIGVDINAQQLRQEFDAVLLTGGSTVPRDLS 246
Query: 257 WPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRLG 316
PG +L G+Y A +FL + N + + GK V VIG G+T D ++ R G
Sbjct: 247 IPGRDLKGVYFAMQFLAQNNRRANGMDLKGEEIHAKGKHVVVIGGGDTGSDCVGTSNRHG 306
Query: 317 A----EVWILYRRTRKE----------MTAREEEIKHAEEEGVKFMFLVSPKRFIGDENG 362
A +V I+ +K M R + EEG + + + K FIG+E G
Sbjct: 307 AASITQVEIMPIPPQKRPVNMPWPQYPMILRTST---SHEEGCERHWNILTKEFIGNEQG 363
Query: 363 NLKAIELEKM--KLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPE--- 417
+ + + + K P E + G V+ D A +A+G FL P
Sbjct: 364 EVTGLRIADIVWKDAAPGERPSFDEV-VGSERVIPCDMAFLAMG------FLHPEPHGVL 416
Query: 418 ----LKVDEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSSS 473
+K+DE+G + ++ T+ GVFA GD G++ V+ + +GR+ A+A+ +L +
Sbjct: 417 AQLGIKLDERGN-VATQDFATNQKGVFAAGDMRTGQSLVVRCINEGRECARAVDTFLMGN 475
Query: 474 S 474
+
Sbjct: 476 T 476
>pir||H69634 glutamate synthase (small subunit) gltB - Bacillus subtilis
>gi|2634227|emb|CAB13727.1| (Z99113) glutamate synthase
(small subunit) [Bacillus subtilis]
>gi|2634238|emb|CAB13737.1| (Z99114) glutamate synthase
(small subunit) [Bacillus subtilis]
Length = 493
Score = 203 bits (510), Expect = 5e-51
Identities = 158/503 (31%), Positives = 250/503 (49%), Gaps = 55/503 (10%)
Query: 5 IKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPC-------IKGCP 57
IK P ER R++D+ E + ++ E + R+ RC+ C + GCP
Sbjct: 10 IKREKPA-ERDPLTRLKDWKEYSAPFSEEASKRQGARCMDCGTPFCQIGADINGFTSGCP 68
Query: 58 VNIDIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVG 117
+ IP + + R +EAL+ + +N+ P TGRVCP CEG C +
Sbjct: 69 IYNLIPEWNDLVYRGR------WKEALERLLKTNNFPEFTGRVCPAP--CEGSCTLAISD 120
Query: 118 DPVNIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMG 177
V+I +ER + D G E+ ++ +I KR GK+VA++G+GPAGL A +L + G
Sbjct: 121 PAVSIKNIERTIID----KGFENGWIQPRIPK-KRTGKKVAIVGSGPAGLASADQLNQAG 175
Query: 178 YEVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELR 237
+ VT+FE GG+L YGIP +L K IV++ ++ L + G+ TN +G +T +EL+
Sbjct: 176 HSVTVFERADRAGGLLTYGIPNMKLEKGIVERRIKLLTQEGIDFVTNTEIGVDITADELK 235
Query: 238 EEFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAY---KFPEYDTPIKIGK 294
E+FDA+ + TGA R G + G++ A ++LT K+Y F + GK
Sbjct: 236 EQFDAVILCTGAQKQRDLLIEGRDSKGVHYAMDYLTLAT--KSYLDSNFKDKQFIDAKGK 293
Query: 295 RVAVIGAGNTAMDAARSALRLGAEVWILYRRTRKEMTAREEE-----------IKHA-EE 342
V VIG G+T D +ALR A+ + + K AR + +++A EE
Sbjct: 294 DVIVIGGGDTGADCVATALRQKAKSVHQFGKHPKLPPARTNDNMWPEQPHVFTLEYAYEE 353
Query: 343 EGVKF-----MFLVSPKRFIGDENGNLK---AIELEKMKLGEPDETGRR--RPIPTGETF 392
KF + + + + D+NG LK I++EK+K +E G+ R +P G
Sbjct: 354 REAKFGRDPREYSIQTTKMVADKNGKLKELHTIQMEKVK----NEHGKYEFRELP-GTEK 408
Query: 393 VMEFDTAIIAIG-QTPNKTFLQTVPELKVDEKGRIIVDENLMTSIPGVFAGGDAIRGEAT 451
V IAIG + + L+ V+ K + T+I GVFA GDA RG++
Sbjct: 409 VWPAQLVFIAIGFEGTEQPLLKQFGVNSVNNKISAAYGD-YQTNIDGVFAAGDARRGQSL 467
Query: 452 VILAMGDGRKAAKAIHKYLSSSS 474
++ A+ +GR+ A+ + +YL SS
Sbjct: 468 IVWAINEGREVAREVDRYLMGSS 490
>gb|AAF49409.1| (AE003526) CG9674 gene product [alt 1] [Drosophila melanogaster]
Length = 2162
Score = 202 bits (509), Expect = 6e-51
Identities = 150/487 (30%), Positives = 241/487 (48%), Gaps = 40/487 (8%)
Query: 7 ERVPTPERSVEERIRDFNEV-NLGYTWELALREAERCLQCPKEYAPCIK-GCPVNIDIPG 64
+R P R ER +D++EV N + + +A RC++C + GCP+ IP
Sbjct: 1678 KRESAPYRDAGERQKDWDEVYNFPHVRKNLKVQAARCMECGVPFCQSNSTGCPLGNIIPK 1737
Query: 65 FIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGK 124
+ + +EAL+ + +N+ P TGRVCP CEG CV+G V I
Sbjct: 1738 WNDLVFHGE------WQEALRQLLQTNNFPEFTGRVCPAP--CEGSCVLGISEPAVTIKN 1789
Query: 125 LERFVADYARQHG-IEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIF 183
+E + D+A + G I+ E+ E R GKRVA++G+GP+GL + +L + G+ VT+F
Sbjct: 1790 IECAIIDHAFEQGWIKPEIPEV------RTGKRVAIVGSGPSGLAASQQLNRAGHFVTVF 1843
Query: 184 EALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAI 243
E GG+L YGIP +L KE+VK+ V+ + G++ TNV VGK + E+L +E+DA+
Sbjct: 1844 ERNDRVGGLLQYGIPTMKLSKEVVKRRVDLMADEGIEFRTNVHVGKDLKAEQLLQEYDAV 1903
Query: 244 FIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGN 303
+ TG+ PR P +L GI+ A EFL K + D GK V +IG G+
Sbjct: 1904 LLTTGSTWPRDLPLANRDLKGIHFAMEFLEA--QQKKQLGGKNDIISAAGKNVIIIGGGD 1961
Query: 304 TAMDAARSALRLGAEVWILYRRTRKEMTAREEE-----------IKHAEEEGVKF----- 347
T D ++LR GA+ + + R ++ + + EE VK
Sbjct: 1962 TGCDCIATSLRQGAKSITTFEILPEPPQKRAQDNPWPQWPKVFRVDYGHEE-VKLKWGKD 2020
Query: 348 --MFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQ 405
+ + K F+G ENG +K + +++ + + R G D ++A+G
Sbjct: 2021 PRQYCTTTKEFVG-ENGAIKGVNTVEVEWTKTETGQWRMQEVAGSEKYFPADLILLAMGF 2079
Query: 406 TPNKTFLQTVPELKVDEKGRIIVDENLM-TSIPGVFAGGDAIRGEATVILAMGDGRKAAK 464
+ + + L++D +G I TS VFA GD RG++ V+ A+ +GR+AA+
Sbjct: 2080 LGPEKTVPSELGLELDPRGNIKASNGQYGTSNSKVFAAGDCRRGQSLVVWAITEGRQAAR 2139
Query: 465 AIHKYLS 471
+ YL+
Sbjct: 2140 QVDSYLT 2146
>gb|AAF49410.1| (AE003526) CG9674 gene product [alt 3] [Drosophila melanogaster]
>gi|7294056|gb|AAF49411.1| (AE003526) CG9674 gene
product [alt 2] [Drosophila melanogaster]
Length = 915
Score = 202 bits (509), Expect = 6e-51
Identities = 150/487 (30%), Positives = 241/487 (48%), Gaps = 40/487 (8%)
Query: 7 ERVPTPERSVEERIRDFNEV-NLGYTWELALREAERCLQCPKEYAPCIK-GCPVNIDIPG 64
+R P R ER +D++EV N + + +A RC++C + GCP+ IP
Sbjct: 431 KRESAPYRDAGERQKDWDEVYNFPHVRKNLKVQAARCMECGVPFCQSNSTGCPLGNIIPK 490
Query: 65 FIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGK 124
+ + +EAL+ + +N+ P TGRVCP CEG CV+G V I
Sbjct: 491 WNDLVFHGE------WQEALRQLLQTNNFPEFTGRVCPAP--CEGSCVLGISEPAVTIKN 542
Query: 125 LERFVADYARQHG-IEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIF 183
+E + D+A + G I+ E+ E R GKRVA++G+GP+GL + +L + G+ VT+F
Sbjct: 543 IECAIIDHAFEQGWIKPEIPEV------RTGKRVAIVGSGPSGLAASQQLNRAGHFVTVF 596
Query: 184 EALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAI 243
E GG+L YGIP +L KE+VK+ V+ + G++ TNV VGK + E+L +E+DA+
Sbjct: 597 ERNDRVGGLLQYGIPTMKLSKEVVKRRVDLMADEGIEFRTNVHVGKDLKAEQLLQEYDAV 656
Query: 244 FIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGN 303
+ TG+ PR P +L GI+ A EFL K + D GK V +IG G+
Sbjct: 657 LLTTGSTWPRDLPLANRDLKGIHFAMEFLEA--QQKKQLGGKNDIISAAGKNVIIIGGGD 714
Query: 304 TAMDAARSALRLGAEVWILYRRTRKEMTAREEE-----------IKHAEEEGVKF----- 347
T D ++LR GA+ + + R ++ + + EE VK
Sbjct: 715 TGCDCIATSLRQGAKSITTFEILPEPPQKRAQDNPWPQWPKVFRVDYGHEE-VKLKWGKD 773
Query: 348 --MFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQ 405
+ + K F+G ENG +K + +++ + + R G D ++A+G
Sbjct: 774 PRQYCTTTKEFVG-ENGAIKGVNTVEVEWTKTETGQWRMQEVAGSEKYFPADLILLAMGF 832
Query: 406 TPNKTFLQTVPELKVDEKGRIIVDENLM-TSIPGVFAGGDAIRGEATVILAMGDGRKAAK 464
+ + + L++D +G I TS VFA GD RG++ V+ A+ +GR+AA+
Sbjct: 833 LGPEKTVPSELGLELDPRGNIKASNGQYGTSNSKVFAAGDCRRGQSLVVWAITEGRQAAR 892
Query: 465 AIHKYLS 471
+ YL+
Sbjct: 893 QVDSYLT 899
>dbj|BAA33218.1| (D85035) dihydropyrimidine dehydrogenase [Rattus norvegicus]
Length = 1025
Score = 201 bits (505), Expect = 2e-50
Identities = 153/475 (32%), Positives = 247/475 (51%), Gaps = 38/475 (8%)
Query: 16 VEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDD 75
+E D LG ALREA RCL+C APC K CP ++DI FI ++
Sbjct: 55 LENNFDDIKHTTLGERG--ALREAVRCLKCAD--APCQKSCPTSLDIKSFITSIA----- 105
Query: 76 PDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD-PVNIGKLERFVADYAR 134
+K A K+I+ N L G VCP D C G C + + P+NIG L++F + +
Sbjct: 106 -NKNYYGAAKLIFSDNPLGLTCGMVCPTSDLCVGGCNLHATEEGPINIGGLQQFATEVFK 164
Query: 135 QHGI---EDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPG 190
I LL + ++A+ GAGPA ++CA+ LA++GY ++TIFE G
Sbjct: 165 AMNIPQIRSPLLPPPEHMPEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVG 224
Query: 191 GVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEEL------REEFDAIF 244
G+ IP+FRLP ++V E+E +K LGVKI + GK+++ +E+ + A F
Sbjct: 225 GLSTSEIPQFRLPYDVVNFEIELMKDLGVKI----ICGKSISTDEMTLSTLKENGYKAAF 280
Query: 245 IGTGAGTP-RIYPWPGV-NLNGIYSANEFLTRINLMKAYKFPEYDTPI-KIGKRVAVIGA 301
IG G P + + + G+ + G Y++ +FL + +P+ + V V+GA
Sbjct: 281 IGIGLPEPKKDHIFQGLTQVQGFYTSKDFLPLVAKGSKPGMCACHSPLPSVRGAVIVLGA 340
Query: 302 GNTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
G+TA D A SALR GA V+I++R+ + A EE++ A+EE +F+ +SP++ I +
Sbjct: 341 GDTAFDCATSALRCGARRVFIVFRKGFANIRAVPEEMELAKEEKCEFLPFLSPRKVI-VK 399
Query: 361 NGNLKAIELEKMKLGEPDETGRRRPIPTGETFV-MEFDTAIIAIGQT-PNKTFLQTVPEL 418
+G + ++ + E DETG + E V ++ D I G + ++ + +
Sbjct: 400 DGKIVGMQFVRT---EQDETGNW--VEDEEQIVRLKADVVISPFGSVLDDPKVIEALSPI 454
Query: 419 KVDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSS 472
K + G V+ E + TS P VFAGGD + T + ++ DG++A+ IH+Y+ +
Sbjct: 455 KFNRWGLPEVNPETMQTSEPWVFAGGDVVGMANTTVESVNDGKQASWYIHEYIQA 509
>gi|4503373 dihydropyrimidine dehydrogenase [Homo sapiens]
>gi|2498310|sp|Q12882|DPYD_HUMAN DIHYDROPYRIMIDINE
DEHYDROGENASE [NADP+] PRECURSOR (DPD) (DIHYDROURACIL
DEHYDROGENASE) (DIHYDROTHYMINE DEHYDROGENASE)
>gi|1082333|pir||A54718 dihydropyrimidine dehydrogenase
(NADP+) (EC 1.3.1.2) - human >gi|558305|gb|AAA57474.1|
(U09178) dihydropyrimidine dehydrogenase [Homo sapiens]
Length = 1025
Score = 200 bits (504), Expect = 2e-50
Identities = 156/474 (32%), Positives = 245/474 (50%), Gaps = 36/474 (7%)
Query: 16 VEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDD 75
+E D LG ALREA RCL+C APC K CP N+DI FI ++
Sbjct: 55 LENNFDDIKHTTLGERG--ALREAMRCLKCAD--APCQKSCPTNLDIKSFITSIA----- 105
Query: 76 PDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD-PVNIGKLERFVADYAR 134
+K A K+I+ N L G VCP D C G C + + P+NIG L++F + +
Sbjct: 106 -NKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFK 164
Query: 135 QHGI---EDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPG 190
I + L + + ++A+ GAGPA ++CA+ LA++GY ++TIFE G
Sbjct: 165 AMSIPQIRNPSLPPPEKMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVG 224
Query: 191 GVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEEL------REEFDAIF 244
G+ IP+FRLP ++V E+E +K LGVKI + GK+++ E+ + + A F
Sbjct: 225 GLSTSEIPQFRLPYDVVNFEIELMKDLGVKI----ICGKSLSVNEMTLSTLKEKGYKAAF 280
Query: 245 IGTGAGTP-RIYPWPGVNLN-GIYSANEFLTRINLMKAYKFPEYDTPI-KIGKRVAVIGA 301
IG G P + + G+ + G Y++ +FL + +P+ I V V+GA
Sbjct: 281 IGIGLPEPNKDAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCACHSPLPSIRGVVIVLGA 340
Query: 302 GNTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
G+TA D A SALR GA V+I++R+ + A EE++ A+EE +F+ +SP++ I +
Sbjct: 341 GDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVI-VK 399
Query: 361 NGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQT-PNKTFLQTVPELK 419
G + A++ + E DETG+ + ++ D I A G + + + +K
Sbjct: 400 GGRIVAMQFVRT---EQDETGKWNE-DEDQMVHLKADVVISAFGSVLSDPKVKEALSPIK 455
Query: 420 VDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSS 472
+ G VD E + TS VFAGGD + T + ++ DG++A+ IHKY+ S
Sbjct: 456 FNRWGLPEVDPETMQTSEAWVFAGGDVVGLANTTVESVNDGKQASWYIHKYVQS 509
>gb|AAB51366.1| (U20938) No definition line found [Homo sapiens]
>gi|6729338|dbj|BAA89789.1| (AB003063) dihydropyrimidine
dehydrogenase [Homo sapiens]
Length = 1025
Score = 200 bits (504), Expect = 2e-50
Identities = 156/474 (32%), Positives = 245/474 (50%), Gaps = 36/474 (7%)
Query: 16 VEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDD 75
+E D LG ALREA RCL+C APC K CP N+DI FI ++
Sbjct: 55 LENNFDDIKHTTLGERG--ALREAMRCLKCAD--APCQKSCPTNLDIKSFITSIA----- 105
Query: 76 PDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD-PVNIGKLERFVADYAR 134
+K A K+I+ N L G VCP D C G C + + P+NIG L++F + +
Sbjct: 106 -NKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFK 164
Query: 135 QHGI---EDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPG 190
I + L + + ++A+ GAGPA ++CA+ LA++GY ++TIFE G
Sbjct: 165 AMSIPQIRNPSLPPPEKMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVG 224
Query: 191 GVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEEL------REEFDAIF 244
G+ IP+FRLP ++V E+E +K LGVKI + GK+++ E+ + + A F
Sbjct: 225 GLSTSEIPQFRLPYDVVNFEIELMKDLGVKI----ICGKSLSVNEMTLSTLKEKGYKAAF 280
Query: 245 IGTGAGTP-RIYPWPGVNLN-GIYSANEFLTRINLMKAYKFPEYDTPI-KIGKRVAVIGA 301
IG G P + + G+ + G Y++ +FL + +P+ I V V+GA
Sbjct: 281 IGIGLPEPNKDAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCACHSPLPSIRGVVIVLGA 340
Query: 302 GNTAMDAARSALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDE 360
G+TA D A SALR GA V+I++R+ + A EE++ A+EE +F+ +SP++ I +
Sbjct: 341 GDTAFDCATSALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVI-VK 399
Query: 361 NGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQT-PNKTFLQTVPELK 419
G + A++ + E DETG+ + ++ D I A G + + + +K
Sbjct: 400 GGRIVAMQFVRT---EQDETGKWNE-DEDQMVHLKADVVISAFGSVLSDPKVKEALSPIK 455
Query: 420 VDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSS 472
+ G VD E + TS VFAGGD + T + ++ DG++A+ IHKY+ S
Sbjct: 456 FNRWGLPEVDPETMQTSEAWVFAGGDVVGLANTTVESVNDGKQASWYIHKYVQS 509
>dbj|BAA12742.1| (D85230) small subunit of NADH-dependent glutamate synthase
[Plectonema boryanum]
Length = 492
Score = 200 bits (504), Expect = 2e-50
Identities = 158/484 (32%), Positives = 234/484 (47%), Gaps = 51/484 (10%)
Query: 18 ERIRDFNEVNLGYTWELALREAERCLQCPKEY-------APCIKGCPVNIDIPGFIRALR 70
+RIR+++E +L E + RC+ C + + GCP+N IP + +
Sbjct: 22 DRIRNWDEFHLSMPEENLRTQGARCMDCGIPFCHTGTLISGMASGCPINNLIPEWNDLIY 81
Query: 71 ENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFVA 130
+EAL + +N+ P TGRVCP CEG CV+G PV I +E +A
Sbjct: 82 RG------LWKEALDRLHKTNNFPEFTGRVCPAP--CEGSCVLGIHNPPVTIKNIEYSIA 133
Query: 131 DYARQHG-IEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEP 189
+ G I+ E KR GK++A++G+GPAGL+ AA+L K+G+ VT+FE P
Sbjct: 134 EKGWNEGWIKPE------PPAKRTGKKIAIVGSGPAGLSAAAQLNKVGHWVTVFERADRP 187
Query: 190 GGVLAYGIPEFRLPK-EIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTG 248
GG+L YGIP +L K E+V + + L+ GVK N +GK + E+L +FDA+ + TG
Sbjct: 188 GGLLMYGIPNMKLDKQEVVMRRLNILEAEGVKFVCNTEIGKDLPAEDLLRDFDAVVLCTG 247
Query: 249 AGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDA 308
A PR P G L GI+ A +FLT N E + GK V +IG G+T D
Sbjct: 248 ATKPRDLPIEGRQLKGIHFAMDFLT-ANTQAVLDQTEPAITAQ-GKDVVIIGGGDTGTDC 305
Query: 309 ARSALRLGA-------------------EVWILYRRTRKEMTAREEEIKHAEEEGVKFMF 349
+++R G W Y + K +EE A+ G +
Sbjct: 306 VGTSIRHGCNGLVQLEILPQPPEERAPNNPWPEYPKVYKMDYGQEEAA--AKFGGDPRAY 363
Query: 350 LVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRP--IPTGETFVMEFDTAIIAIGQTP 407
L + F GDE GN+KA+ +++ E +E G+ P IP G ++ ++A+G
Sbjct: 364 LRTATHFEGDEQGNVKAVHTVEVQ-WERNEQGQFIPKQIP-GTEKIIPAQLVLLAMGFLG 421
Query: 408 NKTFLQTVPELKVDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAI 466
+ L L D + I + TSIP VFA GD RG++ V+ A +GR AA+
Sbjct: 422 PEQPLLDAMGLDRDARSNIKSEYGRYTTSIPKVFAAGDCRRGQSLVVWAFNEGRGAAREC 481
Query: 467 HKYL 470
YL
Sbjct: 482 DLYL 485
>pir||S74625 NADH-glutamate synthase small chain gltD - Synechocystis sp.
(strain PCC 6803) >gi|1651850|dbj|BAA16777.1| (D90900)
NADH-glutamate synthase small subunit [Synechocystis
sp.]
Length = 494
Score = 199 bits (500), Expect = 7e-50
Identities = 154/488 (31%), Positives = 233/488 (47%), Gaps = 47/488 (9%)
Query: 13 ERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEY-------APCIKGCPVNIDIPGF 65
E S +R+R+++E ++ + + RC+ C + + GCP+N IP F
Sbjct: 17 ELSPGDRLRNWDEFHVTMPDKQVETQGARCMDCGTPFCHTGSLISGMASGCPINNLIPEF 76
Query: 66 IRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKL 125
+ REAL + +N+ P TGRVCP CEG CV+G PV I +
Sbjct: 77 NDLVYRG------LWREALDRLHKTNNFPEFTGRVCPAP--CEGSCVLGINNPPVTIKNI 128
Query: 126 ERFVADYARQHG-IEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFE 184
E + + Q G + E KR GK+VAV+G+GPAGL AA+L K G+ VT++E
Sbjct: 129 EYSIIEKGWQEGWVTPE------PPAKRTGKKVAVVGSGPAGLAAAAQLNKAGHWVTVYE 182
Query: 185 ALHEPGGVLAYGIPEFRLPK-EIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAI 243
PGG+L YGIP +L K E+V + + L+ GV N +GK + E L +++DA+
Sbjct: 183 REDRPGGLLMYGIPNMKLDKEEVVLRRLNVLEAEGVTFVCNTEIGKDLPPETLLKDYDAV 242
Query: 244 FIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGN 303
+ TGA PR G L GI+ A EFLT K P + K V +IG G+
Sbjct: 243 VLCTGATKPRDLAIAGRELEGIHFAMEFLTANTKAILDKTPGPNFISAKDKDVVIIGGGD 302
Query: 304 TAMDAARSALRLGAEVWI---LYRRTRKEMTAREE--------EIKHAEEEGVKF----- 347
T D ++LR G + + + +E A ++ + +EE
Sbjct: 303 TGTDCVGTSLRHGCRSLVQLEIMPKPPEERAANNPWPEWPKVYKMDYGQEEAAAVYGHDP 362
Query: 348 -MFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRPIP---TGETFVMEFDTAIIAI 403
+L + + GD+ G +KA+ ++ ++ G+ R IP G V ++A+
Sbjct: 363 RSYLTTATKIEGDDQGRVKAVHTVDVRW---EKDGQGRFIPQQVAGTEQVRPAQLVLLAM 419
Query: 404 GQTPNKTFLQTVPELKVDEKGRIIVD-ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKA 462
G ++ L +L D +G I + TSIPGVFA GD RG++ V+ A +GR A
Sbjct: 420 GFVGPESQLLDAMKLDKDARGNIKAEYGQYETSIPGVFAAGDCRRGQSLVVWAFNEGRGA 479
Query: 463 AKAIHKYL 470
AKA YL
Sbjct: 480 AKACDLYL 487
>gb|AAD41676.1|AF082880_2 (AF082880) glutamate synthase small subunit [Clostridium
acetobutylicum]
Length = 490
Score = 195 bits (490), Expect = 1e-48
Identities = 142/488 (29%), Positives = 243/488 (49%), Gaps = 48/488 (9%)
Query: 14 RSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPC-------IKGCPVNIDIPGFI 66
R +ER++D+ E + E + RC+ C + + GCP++ IP +
Sbjct: 18 REPKERLKDYKEFHQRLPLEKQCIQGARCMDCGVPFCQAGVLFSGMVSGCPLHNLIPEWN 77
Query: 67 RALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLE 126
+ + + A + + +N P TGRVCP CE C G G + I + E
Sbjct: 78 DLVYRGKWEL------AYERLNKTNPFPEFTGRVCPAP--CEAGCTAGLNGPAITIKENE 129
Query: 127 RFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEAL 186
R + D A ++G + +KR GK+VAVIG+GP+GL A L K G++VT+FE
Sbjct: 130 RSIIDNAFENGFV-----KANTPLKRTGKKVAVIGSGPSGLAVANTLNKCGHKVTVFERS 184
Query: 187 HEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIG 246
PGG+L YGIP +L KE++ + V + G+K N VG +E+ +EFDA+ +
Sbjct: 185 DRPGGLLMYGIPNMKLDKEVILRRVHLMAEEGIKFVNNANVGDNYDAKEILDEFDAVVLA 244
Query: 247 TGAGTPRIYPWPG-VNLNGIYSANEFL---TRINLMKAYKFPEYDTPIKIGKRVAVIGAG 302
TGA PR G N+NGI+ A +FL T+ L ++ Y + K V +IG G
Sbjct: 245 TGASQPRDLQAEGRDNVNGIHFAVDFLKANTKSLLDSDHEDNNYIS--AKDKNVIIIGGG 302
Query: 303 NTAMDAARSALRLGAEVWILYRRTRKEMTAREE-----------EIKHAEEEGVKFMFLV 351
+T D ++LR G + + + + R E ++ + +EE ++ ++
Sbjct: 303 DTGTDCVATSLRHGCKSVVQFEIMGEPAHERTESNPMPEWPKVLKVDYGQEEFIE-LYGK 361
Query: 352 SPKRFI-------GDENGNLKAIELEKMKLGEPDETGRRRPIPT-GETFVMEFDTAIIAI 403
P+ ++ D++GNL++++ K++ + D GR P G + ++A+
Sbjct: 362 DPREYLTTVTAVHSDKDGNLESVDTVKVEWKKGD-NGRMFPAHVEGSEKNWPAELILLAM 420
Query: 404 GQTPNKTFLQTVPELKVDEKGRIIV-DENLMTSIPGVFAGGDAIRGEATVILAMGDGRKA 462
G T ++ +L+ ++ DE+ + + + MT++P VFA GDA RG++ V+ A+ +G A
Sbjct: 421 GFTGSEDYLKNAFGIESDERSNVKAGNVDFMTNVPKVFATGDARRGQSLVVTAISEGIAA 480
Query: 463 AKAIHKYL 470
A+ K+L
Sbjct: 481 GIAVDKFL 488
>pir||T24629 glutamate synthase (NADH) (EC 1.4.1.14) precursor [similarity] -
Caenorhabditis elegans >gi|3879588|emb|CAA90070.1|
(Z49889) contains similarity to Pfam domain: PF00070
(Pyridine nucleotide-disulphide oxidoreductase),
Score=64.4, E-value=9.7e-19, N=3; PF01493 (Domain of
unknown function), Score=261.9, E-value=2.8e-75, N=1;
PF01645 (Conserved region in glutamate synt>
>gi|3880576|emb|CAA90032.1| (Z49868) contains similarity
to Pfam domain: PF00070 (Pyridine nucleotide-disulphide
oxidoreductase), Score=64.4, E-value=9.7e-19, N=3;
PF01493 (Domain of unknown function), Score=261.9,
E-value=2.8e-75, N=1; PF01645 (Conserved region in
glutamate synt>
Length = 2207
Score = 194 bits (489), Expect = 1e-48
Identities = 150/488 (30%), Positives = 241/488 (48%), Gaps = 52/488 (10%)
Query: 14 RSVEERIRDFNEVNLGYTWELA---LRE-AERCLQCPKEYAPCIKGCPVNIDIPGFIRAL 69
R +ER+ D++EV Y +E +RE A RC+ C + GCP+ IP +
Sbjct: 1718 RDPKERLNDWDEV---YDFEAVRSNIREQAARCMDCGVPFCQGHSGCPLGNIIPKW---- 1770
Query: 70 RENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFV 129
N K R+AL+ + +N+ P TGRVCP CEG C +G V I +E +
Sbjct: 1771 --NDFVFKKNWRQALEQLLQTNNFPEFTGRVCPAP--CEGACTLGIGSPAVTIKSIECAI 1826
Query: 130 ADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEP 189
DYA G + + GKR+A+IG+GP+GL AA+L K+G+ V ++E +
Sbjct: 1827 IDYAFMQG-----WMKPCKPAFNTGKRIAIIGSGPSGLGAAAQLVKVGHTVVVYERKNRV 1881
Query: 190 GGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGA 249
GG+L YGIP +L K +V + V L++ GV+ TN +GK V + L +E DAI + TG+
Sbjct: 1882 GGLLRYGIPTMKLDKFVVDRRVSLLEQEGVRFLTNTEIGKHVPADFLLKENDAIIVCTGS 1941
Query: 250 GTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAA 309
T R G + G+ A E+L + +A ++ K+V ++G G+TA D
Sbjct: 1942 TTARDLNVEGRDAKGVCFAMEYLEKSQRRRAGDDVSWEGLDPANKKVIILGGGDTATDCI 2001
Query: 310 RSALRLGAEVWILYRRTRKEMTAREEE-----------IKHAEEEGVKF------MFLVS 352
++ RLG + + + R+ E + + EE + + VS
Sbjct: 2002 ATSNRLGCKTVGAFEILPQPGPNRKPENPWPEWPLIFRVDYGHEEAKEMTGSDPRTYSVS 2061
Query: 353 PKRFIGDENG-------NLKAIELEKMKLGEPDETGRRRPIPTGETF-VMEFDTAIIAIG 404
KRF+ N L+ +++E E D+ G + I ET +E D I+A+G
Sbjct: 2062 TKRFLTTTNAAGITVLTGLEIVDVE----WEKDDKGAWKLIEKNETIRTIECDLCILAMG 2117
Query: 405 QT-PNKTFLQTVPELKVDEKGRIIVDENLMTS-IPGVFAGGDAIRGEATVILAMGDGRKA 462
P K+ ++ + LK D + I+ ++ S + VFA GD RG++ V+ A+ +GR+A
Sbjct: 2118 FVGPEKSVIEQL-NLKTDPRSNILTPKDKYDSDVAKVFAAGDCRRGQSLVVWAIHEGRQA 2176
Query: 463 AKAIHKYL 470
A+ + +YL
Sbjct: 2177 ARQVDEYL 2184
>gi|6320030 Glutamate synthase (NADPH); Glt1p [Saccharomyces cerevisiae]
>gi|2131263|pir||S61041 glutamate synthase (NADH) (EC
1.4.1.14) glt1 precursor [similarity] - yeast
(Saccharomyces cerevisiae) >gi|1061267|emb|CAA91574.1|
(Z67750) putative protein [Saccharomyces cerevisiae]
>gi|1431274|emb|CAA98745.1| (Z74219) ORF YDL171c
[Saccharomyces cerevisiae]
Length = 2145
Score = 192 bits (483), Expect = 7e-48
Identities = 142/489 (29%), Positives = 226/489 (46%), Gaps = 38/489 (7%)
Query: 4 LIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIP 63
+I +R R R+ D+ E T + A + RC+ C + GCP++ IP
Sbjct: 1645 MIHKRRHETHRDPRTRVNDWKEFTNPITKKDAKYQTARCMDCGTPFCLSDTGCPLSNIIP 1704
Query: 64 GFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIG 123
F L +N+ + AL + ++N+ P TGRVCP CEG C +G + DPV I
Sbjct: 1705 KFNELLFKNQ------WKLALDKLLETNNFPEFTGRVCPAP--CEGACTLGIIEDPVGIK 1756
Query: 124 KLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIF 183
+ER + D A + G + R G V VIG+GPAGL CA L + G+ VT++
Sbjct: 1757 SVERIIIDNAFKEG-----WIKPCPPSTRTGFTVGVIGSGPAGLACADMLNRAGHTVTVY 1811
Query: 184 EALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAI 243
E GG+L YGIP +L K IV++ ++ L G+ TN +GKT++ +EL+ + +A+
Sbjct: 1812 ERSDRCGGLLMYGIPNMKLDKAIVQRRIDLLSAEGIDFVTNTEIGKTISMDELKNKHNAV 1871
Query: 244 FIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGN 303
G+ PR P G L I A + L K E GK+V V+G G+
Sbjct: 1872 VYAIGSTIPRDLPIKGRELKNIDFAMQLLESNTKALLNKDLEIIREKIQGKKVIVVGGGD 1931
Query: 304 TAMDAARSALRLGA-------------------EVWILYRRTRKEMTAREEEIKHAEEEG 344
T D +++R GA W + R + E +H +
Sbjct: 1932 TGNDCLGTSVRHGAASVLNFELLPEPPVERAKDNPWPQWPRVMRVDYGHAEVKEHYGRDP 1991
Query: 345 VKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDE-TGRRRPIPTGETFVMEFDTAIIAI 403
++ L K FIG++ G + AI +++ + + IP E + E D ++++
Sbjct: 1992 REYCIL--SKEFIGNDEGEVTAIRTVRVEWKKSQSGVWQMVEIPNSEE-IFEADIILLSM 2048
Query: 404 GQTPNKTFLQTVPELKVDEKGRIIVDENLMTSIPG--VFAGGDAIRGEATVILAMGDGRK 461
G + E+K +G I ++ SI G FA GD RG++ ++ A+ +GRK
Sbjct: 2049 GFVGPELINGNDNEVKKTRRGTIATLDDSSYSIDGGKTFACGDCRRGQSLIVWAIQEGRK 2108
Query: 462 AAKAIHKYL 470
A ++ K+L
Sbjct: 2109 CAASVDKFL 2117
>sp|Q12680|GLT1_YEAST GLUTAMATE SYNTHASE [NADPH] PRECURSOR (NADPH-GOGAT)
>gi|1370295|emb|CAA61505.1| (X89221) glutamate synthase
(NADPH) [Saccharomyces cerevisiae]
Length = 2144
Score = 191 bits (480), Expect = 2e-47
Identities = 141/489 (28%), Positives = 226/489 (45%), Gaps = 38/489 (7%)
Query: 4 LIKERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIP 63
+I +R R R+ D+ E T + A + RC+ C + GCP++ IP
Sbjct: 1644 MIHKRRHETHRDPRTRVNDWKEFTNPITKKDAKYQTARCMDCGTPFCLSDTGCPLSNIIP 1703
Query: 64 GFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIG 123
F L +N+ + AL + ++N+ P TGRVCP CEG C +G + DP+ I
Sbjct: 1704 KFNELLFKNQ------WKLALDKLLETNNFPEFTGRVCPAP--CEGACTLGIIEDPLGIK 1755
Query: 124 KLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIF 183
+ER + D A + G + R G V VIG+GPAGL CA L + G+ VT++
Sbjct: 1756 SVERIIIDNAFKEG-----WIKPCPPSTRTGFTVGVIGSGPAGLACADMLNRAGHTVTVY 1810
Query: 184 EALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAI 243
E GG+L YGIP +L K IV++ ++ L G+ TN +GKT++ +EL+ + +A+
Sbjct: 1811 ERSDRCGGLLMYGIPNMKLDKAIVQRRIDLLSAEGIDFVTNTEIGKTISMDELKNKHNAV 1870
Query: 244 FIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGN 303
G+ PR P G L I A + L K E GK+V V+G G+
Sbjct: 1871 VYAIGSTIPRDLPIKGRELKNIDFAMQLLESNTKALLNKDLEIIREKIQGKKVIVVGGGD 1930
Query: 304 TAMDAARSALRLGA-------------------EVWILYRRTRKEMTAREEEIKHAEEEG 344
T D +++R GA W + R + E +H +
Sbjct: 1931 TGNDCLGTSVRHGAASVLNFELLPEPPVERAKDNPWPQWPRVMRVDYGHAEVKEHYGRDP 1990
Query: 345 VKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDE-TGRRRPIPTGETFVMEFDTAIIAI 403
++ L K FIG++ G + AI +++ + + IP E + E D ++++
Sbjct: 1991 REYCIL--SKEFIGNDEGEVTAIRTVRVEWKKSQSGVWQMVEIPNSEE-IFEADIILLSM 2047
Query: 404 GQTPNKTFLQTVPELKVDEKGRIIVDENLMTSIPG--VFAGGDAIRGEATVILAMGDGRK 461
G + E+K +G I ++ SI G FA GD RG++ ++ A+ +GRK
Sbjct: 2048 GFVGPELINGNDNEVKKTRRGTIATLDDSSYSIDGGKTFACGDCRRGQSLIVWAIQEGRK 2107
Query: 462 AAKAIHKYL 470
A ++ K+L
Sbjct: 2108 CAASVDKFL 2116
>pir||G72689 probable glutamate synthase small chain APE0935 - Aeropyrum pernix
(strain K1) >gi|5104604|dbj|BAA79919.1| (AP000060) 337aa
long hypothetical glutamate synthase small chain
[Aeropyrum pernix]
Length = 337
Score = 190 bits (477), Expect = 4e-47
Identities = 115/325 (35%), Positives = 179/325 (54%), Gaps = 11/325 (3%)
Query: 154 GKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEK 213
GK V++IGAGPAGL A L G+EV +++ + EPGG++ +GIP+ R+PK+ ++K V +
Sbjct: 14 GKTVSIIGAGPAGLGAAGFLRCRGHEVVVYDMMPEPGGMMMFGIPDDRIPKDNIRKSVRE 73
Query: 214 LKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLT 273
L G +I N VG+ ++ E++ + DA+ I TG PR PG +L + A ++L
Sbjct: 74 LVEGGARIILNNKVGRDISLEDIIKASDAVLIATGTWKPRRLGAPGEDLPWVLPAADWLV 133
Query: 274 RINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSAL-----RLGAEVWIL-YRRTR 327
+++ + P P K+G R+ V+G G TA DA L + G E +L YRRTR
Sbjct: 134 EVHMARYGYLPWAKVP-KVGGRILVVGGGLTAADAVHVPLTYPEFKDGVEKVVLSYRRTR 192
Query: 328 KEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRPIP 387
R+ E + + G + L P F E G K ++ +M+L + ++GR +P+P
Sbjct: 193 DYAPMRKNEFERLIKMGAEAWELTQPIAFY--EEGGRKVVKFVRMEL-KASDSGRPKPVP 249
Query: 388 -TGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDENLMTSIPGVFAGGDAI 446
G F EFD A++AIG+ P F ++++ G I DEN MT+ GVFA GD
Sbjct: 250 IEGSEFEAEFDWALLAIGEVPTPPFNNGCCGIELNPDGTIKTDENFMTTRKGVFASGDVR 309
Query: 447 RGEATVILAMGDGRKAAKAIHKYLS 471
G + + A+ G AA+ +H YL+
Sbjct: 310 HGPSLIGKALKSGLDAAQKVHLYLT 334
>pir||T49818 probable glutamate synthase (NADPH) [imported] - Neurospora crassa
>gi|8218225|emb|CAB92626.1| (AL356815) probable glutamate
synthase (NADPH) [Neurospora crassa]
Length = 2116
Score = 185 bits (466), Expect = 7e-46
Identities = 137/482 (28%), Positives = 228/482 (46%), Gaps = 37/482 (7%)
Query: 14 RSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENR 73
R R++D+ E++ + ++ RC+ C + GCP++ IP + + + +
Sbjct: 1628 RKPATRVKDWAELSQRLDEDELKYQSARCMDCGVPFCQSDSGCPISNIIPKWNELVFQGQ 1687
Query: 74 DDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFVADYA 133
R+AL + +N+ P TGRVCP CEG CV+G PV I +E + D
Sbjct: 1688 ------WRDALNRLLMTNNFPEFTGRVCPAP--CEGACVLGINEQPVGIKSIECAIID-- 1737
Query: 134 RQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVL 193
G E + + I R GK VA+IG+GPAGL A +L K G+ VT++E GG+L
Sbjct: 1738 --RGFEMGWMVPEPPKI-RTGKNVAIIGSGPAGLAAADQLNKAGHNVTVYERADRLGGLL 1794
Query: 194 AYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPR 253
YGIP +L K IVK+ + + GV+ +T V +G+ +T +L+++ DA+ I TGA R
Sbjct: 1795 MYGIPNMKLDKRIVKRRTDFMAAEGVQFKTGVAIGEDITLVDLKKQNDAVIIATGATVAR 1854
Query: 254 IYPWPGVNLNGIYSANEFLTR-INLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSA 312
P NL GI+ A EFL + + + + K V VIG G+T D ++
Sbjct: 1855 DLPIKNRNLEGIHFAMEFLHKNTKSLLDSELADGSYISAKDKHVIVIGGGDTGNDCIGTS 1914
Query: 313 LRLGAEVWILYRRTRKEMTAR------------------EEEIKHAEEEGVKFMFLVSPK 354
+R GA+ I + K AR +E+K + + + + +
Sbjct: 1915 VRHGAKSVINFELLPKPPPARGRDNPWPQWPRVYRVDYGHDEVKQHTGKDPR-EYCIMSE 1973
Query: 355 RFIGDENGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIG-QTPNKTFLQ 413
F+ D NG ++ I +++ + G G D ++++G P L
Sbjct: 1974 EFVDDGNGKVRGINTIRVEWTKSASGGWDMKKIEGSQQFFPADLVLLSMGFLGPEARVLG 2033
Query: 414 TVPELKVDEKGRIIVDE-NLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSS 472
E++ D + + T++ GVFA GD RG++ ++ + +GR+AA+ + YL
Sbjct: 2034 --DEIEKDPRKNVKTPPGKYSTNVEGVFAAGDCRRGQSLIVWGINEGRQAAREVDLYLEK 2091
Query: 473 SS 474
S+
Sbjct: 2092 ST 2093
>gb|AAF46461.2| (AE003446) Reg-3 gene product [Drosophila melanogaster]
Length = 1031
Score = 184 bits (462), Expect = 2e-45
Identities = 140/450 (31%), Positives = 229/450 (50%), Gaps = 38/450 (8%)
Query: 35 ALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDDPDKAVREALKIIWDSNSLP 94
AL EA RCL+C APC K CP +DI FI ++ +K A K I+ N L
Sbjct: 74 ALEEAARCLKCAD--APCQKSCPTQLDIKSFITSIA------NKNFYGAAKAIFSDNPLG 125
Query: 95 AITGRVCPQEDQCEGVC-VVGKVGDPVNIGKLERFVADYARQHGIEDELLEEQIRGIKRN 153
G VCP D C G C + P+NIG L++F + ++ G+ +
Sbjct: 126 LTCGMVCPTSDLCVGGCNLQASEAGPINIGGLQQFATEVFKKMGVRQRRTPQA--EANPL 183
Query: 154 GKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVE 212
+++A++G GPA L+CA LA++GY +VTI+E GG+ A IP++RLP + V E++
Sbjct: 184 SQKIALVGGGPASLSCATFLARLGYRDVTIYERRSYLGGLSAAEIPQYRLPIDAVNFEID 243
Query: 213 KLKRLGVKIETNVLVG-KTVTFEELREE-FDAIFIGTGAGTPRIYP-WPGVN-LNGIYSA 268
++ LGV+IET +G K +T + L DA+F+G G P++ P + G+ NG Y++
Sbjct: 244 LVRDLGVRIETGRSLGTKDLTIQGLLSTGHDAVFVGIGLPEPKLNPIFAGLQPSNGFYTS 303
Query: 269 NEFLTRIN---------LMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRLGA-E 318
FL ++ A P K+ V V+GAG+TA D A SALR GA
Sbjct: 304 KNFLPLVSDGSKPGLCACKAAAGLP------KLHGNVIVLGAGDTAFDCATSALRCGARR 357
Query: 319 VWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPD 378
V++++R+ + A EE++ A +E + + +SP++ I ++G + A+E + + E D
Sbjct: 358 VFVVFRKGSSGIRAVPEEVELARDERCELLPYLSPRKVI-VKDGLITAMEFCRTEQNEND 416
Query: 379 ETGRRRPIPTGETFVMEFDTAIIAIGQ-TPNKTFLQTVPELKVDEKGRIIVDENLMTSIP 437
E +T ++ + I A G ++ + L+ + ++ + +S+
Sbjct: 417 EWVEDEE----QTQRLKANFVISAFGSGLEDQDVKAALAPLQFRGELPVVDRVTMQSSVK 472
Query: 438 GVFAGGDAIRGEATVILAMGDGRKAAKAIH 467
VF GGD T + ++ DG+ AA +IH
Sbjct: 473 QVFLGGDLAGVANTTVESVNDGKVAAWSIH 502
>pir||T28635 glutamate synthase (NADH) (EC 1.4.1.14) - malaria parasite
(Plasmodium falciparum) >gi|3036869|emb|CAA76602.1|
(Y17045) NAD(P)H-dependent glutamate synthase [Plasmodium
falciparum]
Length = 3097
Score = 174 bits (437), Expect = 2e-42
Identities = 114/330 (34%), Positives = 176/330 (52%), Gaps = 24/330 (7%)
Query: 7 ERVPTPERSVEERIRDFNEVNLGYTWELALR------EAERCLQC--PKEYAPCIKG--C 56
ER+ P + + R+ D++E+ + + L +A RC+ C P + P G C
Sbjct: 2509 ERLSHPLKDISSRVLDYSEITVPINVKSKLHNQLLKTQASRCVDCGTPTCHYPNSSGGGC 2568
Query: 57 PVNIDIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKV 116
P+ I + + EN ++AL+ + D+N+ P ITGRVCP CE CV+
Sbjct: 2569 PLGNRIFDWNNLVYENE------WKKALERLLDTNNFPEITGRVCPAP--CEDACVLSIN 2620
Query: 117 GDPVNIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKM 176
V+I +E + +Y G + ++ I I R GK+VA++G+GPAGLT A +L K
Sbjct: 2621 EKAVSIKFIELSIIEY----GFIKKWIQPMIP-ISRTGKKVAIVGSGPAGLTAAQQLNKA 2675
Query: 177 GYEVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEEL 236
G+EVT+FE GG+L GIP RL K+I+++ + +K+ G+ ++ NV VG +T +L
Sbjct: 2676 GHEVTVFEKDEYFGGLLMNGIPNVRLDKKILERRLILMKKEGILMKNNVNVGVDITLSDL 2735
Query: 237 REEFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIG-KR 295
+E+DAI + TG PR PG NLN IY A +FLT + D I + K
Sbjct: 2736 VKEYDAILLATGYKIPRKLDIPGANLNNIYFAMDFLTSCQISLTKSDMTDDNYIDVSEKH 2795
Query: 296 VAVIGAGNTAMDAARSALRLGAEVWILYRR 325
V ++G G TA+D A+R+GA + + R
Sbjct: 2796 VIILGGGKTAVDCISLAIRMGASSVLQFTR 2825
>dbj|BAA75930.1| (AB024708) glutamine 2-oxoglutarate aminotransferase small subunit
[Corynebacterium glutamicum]
Length = 506
Score = 170 bits (427), Expect = 3e-41
Identities = 145/496 (29%), Positives = 229/496 (45%), Gaps = 73/496 (14%)
Query: 14 RSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENR 73
R V R+ D++EV +A RC+ C + C +GCP+ IP + +R+ R
Sbjct: 18 RPVPLRLMDYSEVYEKAPAGQIEEQAARCMDCGVPF--CHEGCPLGNIIPEWNDLVRQGR 75
Query: 74 DDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFVADYA 133
+EA + +N+ P TGR+CP CEG CV+G D V I +E + + A
Sbjct: 76 ------WKEAYDRLHATNNFPEFTGRLCPAP--CEGACVLGINDDSVTIKNVELEIVEKA 127
Query: 134 RQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVL 193
+ G ++ G+ VAV+G+GPAGL A +L + G+ VT+FE GG++
Sbjct: 128 FREGWVQPVVASMSTGLS-----VAVVGSGPAGLAAAQQLTRAGHSVTVFERDDRLGGLM 182
Query: 194 AYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPR 253
YG+PE+++ + + +E+++ G T VG + EL FDAI + TG R
Sbjct: 183 RYGVPEYKMENRWIDRRIEQMEAEG----TTFQVGTSPRAAEL-ALFDAILLATGTPVAR 237
Query: 254 IYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYD---TPIKI-GKRVAVIGAGNTAMDAA 309
PG +LNGI++A ++LT N + E D +PI GK+V +IG G+T D
Sbjct: 238 ELSVPGHDLNGIHAAMDYLTAQN-----RINEGDGEVSPINAKGKKVVIIGGGDTGTDCF 292
Query: 310 RSALRLGAE-------------------VWILYRRTRKEMTARE--EEIKHAEEEGVKFM 348
+ALR GAE W +Y + TA E E I +E +
Sbjct: 293 GTALRQGAESVTQFDIRPRAPFQRADSTPWPMYPNLFRTATAHEEGEYIITGDESADEIA 352
Query: 349 FLVSPKRFIGD----------------ENGNLKAIELEKMKLGEPDETGRRRPIPTGETF 392
L +R G NG++ + ++++ G+R PI G F
Sbjct: 353 ALGLAERAAGSTLGERKFAVNTVEFHGNNGHVTGLTGNQIRV----VNGKREPI-EGTEF 407
Query: 393 VMEFDTAIIAIGQT-PNKTFLQTVPELKVDEKGRIIVDENLMTSIPG-VFAGGDAIRGEA 450
E D ++A+G T + L + D++GRI+ D + V+ GD RG++
Sbjct: 408 PFEADLVLVALGFTGAEQGGLAHELGVGFDDRGRILRDSEYRSPTNSRVYIAGDNGRGQS 467
Query: 451 TVILAMGDGRKAAKAI 466
++ A+ +GR A AI
Sbjct: 468 LIVWAIAEGRACAAAI 483
>gb|AAG13082.1| (U84760) DsrL [Allochromatium vinosum]
Length = 654
Score = 170 bits (427), Expect = 3e-41
Identities = 139/464 (29%), Positives = 216/464 (45%), Gaps = 53/464 (11%)
Query: 40 ERCLQCPK---EYAPCIKGCPVNIDIPGFIRALRENRDDPDKA--VREALKIIWDSNSLP 94
+R +CP + PC CP DI G+++ +R P A + D+N P
Sbjct: 35 DRSHKCPTYVHKTPPCQGSCPSGEDIRGWLQIVRGMEKPPQGMDWQEYAFRRSTDANPFP 94
Query: 95 AITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFVADYARQHGIEDELLEEQIRGIKRNG 154
A+ GRVCP C+ C ++ D V I +E+F+ D A +G E E G
Sbjct: 95 AMMGRVCPA--PCQDGCNRNELEDFVGINSVEQFIGDTAIANGYTFEAPELD------TG 146
Query: 155 KRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVEKL 214
KR+A++G GPAGL A +L + G+ TIFEA GG+ +GIP +R+P++ + E++++
Sbjct: 147 KRIAIVGGGPAGLAAAYQLRRKGHSCTIFEANDGLGGMFRFGIPGYRVPRDKLDAEIQRI 206
Query: 215 KRLG-VKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPG--------VNLNGI 265
+G V++ +G VT E+L +++DAI G + R P PG + +
Sbjct: 207 LDMGRVEVRLKTRIGTDVTVEQLEKDYDAILWAIGCQSGRGLPVPGWEGTPNCVTGVAFL 266
Query: 266 YSANEFLTRINLMKAYKFPEYDTPI---KIGKRV-------------AVIGAGNTAMDAA 309
+ NE ++ K DT I + +R+ VI G A DAA
Sbjct: 267 KAFNEGRMKVTAGKVVCVGGGDTSIDVVSVARRLGHVNKSNPNELPETVIRDGYVAHDAA 326
Query: 310 RSALRLGAEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIEL 369
+A GAEV + TR +MTA E E+ A EGV + V P I D NG +++
Sbjct: 327 SAAAAQGAEVTLTSLFTRDKMTASEHEVDDATREGVTILDGVMPVEVIKDANGRAIGLKV 386
Query: 370 EKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVD 429
+ + GR P+ G V+E D + AIGQ + + L+ + + GR ++D
Sbjct: 387 ADCTMTD----GRPTPV-EGTERVLEADLIVSAIGQGGDLSGLEQL------DNGRGLMD 435
Query: 430 ENLMTSIPGV---FAGGDAIRGEATVILAMGDGRKAAKAIHKYL 470
+ +PG F GD IR + A+G AA +I Y+
Sbjct: 436 SDKFYQVPGKAGHFVAGDIIRPH-LLTTAIGQAWIAADSIDAYV 478
>pir||D81416 glutamate synthase (NADPH) (EC 1.4.1.13) small chain Cj0009
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6967514|emb|CAB72502.1| (AL139074) glutamate
synthase (NADPH) small subunit [Campylobacter jejuni]
Length = 481
Score = 166 bits (416), Expect = 5e-40
Identities = 139/484 (28%), Positives = 229/484 (46%), Gaps = 53/484 (10%)
Query: 17 EERIRDFNEVNLGYTWELALREAERCLQCPKEYAPC-------IKGCPVNIDIPGFIRAL 69
+ERI ++ E + + + RC+ C + GCP+N IP + +
Sbjct: 21 KERILNYKEFTIPLDKKEQEVQGGRCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLV 80
Query: 70 RENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFV 129
+ +EA + + +N P TGRVCP CE CV G V+I E +
Sbjct: 81 YRS------LWKEAYERLDLTNPFPEFTGRVCPAP--CEDSCVCAINGVSVSIKNNELSI 132
Query: 130 ADYARQHGIEDELLEEQIRGIKR---NGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEAL 186
IE+ E +R K NGK++AVIG+GPAGL CA L +GY+V++FE
Sbjct: 133 --------IENAFKENLVRVNKPKQYNGKKIAVIGSGPAGLACANTLNSLGYKVSVFERS 184
Query: 187 HEPGGVLAYGIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIG 246
+ GG+L YGIP+ +L K IV++ V+ LK+ G++ + N + +L +EFDA+ +
Sbjct: 185 DKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIEFKVNENIDSKDKVSKLLKEFDALVLC 244
Query: 247 TGAGTPRIYPWPGVNLNGIYSANEFLTR--INLMKAYKFPEYDTPIKIGKRVAVIGAGNT 304
TGA P G L G+ A +FLT+ L+K K + GK V VIG+G+T
Sbjct: 245 TGASKPIDLDIEGRKLKGVEFALDFLTQNTKTLLKTGK----GADMAKGKNVLVIGSGDT 300
Query: 305 AMDAARSALRLGAEVWILYRRTRKEMTAREEE-----------IKHAEEEGVKFM----- 348
++D A R GA+ + + R+ K R + + EE +
Sbjct: 301 SVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNPWPLKADIFTTDYGLEEAIAVYGKDPR 360
Query: 349 -FLVSPKRFIGDENGNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTP 407
+ K+F+G +++ +E +K + I + + D ++A+G +
Sbjct: 361 EYQKMTKKFLG--KTHVEGVEANDLKREFKEGKAINVEISNSKK-TYKADLVLLAMGFSG 417
Query: 408 NKTFLQTVPELKVDEKGRIIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIH 467
+ + +K+DEK I EN T+ +FA GDA +G++ V+ A+ DG + A ++H
Sbjct: 418 CEEAISKNFGVKLDEKNNIST-ENFQTTHKKIFACGDARKGQSLVVWAIKDGIECALSLH 476
Query: 468 KYLS 471
+ L+
Sbjct: 477 QNLA 480
>gi|11421673 dihydropyrimidine dehydrogenase [Homo sapiens]
Length = 465
Score = 165 bits (413), Expect = 1e-39
Identities = 129/404 (31%), Positives = 212/404 (51%), Gaps = 26/404 (6%)
Query: 86 IIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD-PVNIGKLERFVADYARQHGI---EDE 141
+I+ N L G VCP D C G C + + P+NIG L++F + + I +
Sbjct: 1 MIFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNP 60
Query: 142 LLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY-EVTIFEALHEPGGVLAYGIPEF 200
L + + ++A+ GAGPA ++CA+ LA++GY ++TIFE GG+ IP+F
Sbjct: 61 SLPPPEKMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQF 120
Query: 201 RLPKEIVKKEVEKLKRLGVKIETNVLVGKTVTFEEL------REEFDAIFIGTGAGTP-R 253
RLP ++V E+E +K LGVKI + GK+++ E+ + + A FIG G P +
Sbjct: 121 RLPYDVVNFEIELMKDLGVKI----ICGKSLSVNEMTLSTLKEKGYKAAFIGIGLPEPNK 176
Query: 254 IYPWPGVNLN-GIYSANEFLTRINLMKAYKFPEYDTPI-KIGKRVAVIGAGNTAMDAARS 311
+ G+ + G Y++ +FL + +P+ I V V+GAG+TA D A S
Sbjct: 177 DAIFQGLTQDQGFYTSKDFLPLVAKGSKAGMCACHSPLPSIRGVVIVLGAGDTAFDCATS 236
Query: 312 ALRLGA-EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELE 370
ALR GA V+I++R+ + A EE++ A+EE +F+ +SP++ I + G + A++
Sbjct: 237 ALRCGARRVFIVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVI-VKGGRIVAMQFV 295
Query: 371 KMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQT-PNKTFLQTVPELKVDEKGRIIVD 429
+ E DETG+ + ++ D I A G + + + +K + G VD
Sbjct: 296 RT---EQDETGKWNE-DEDQMVHLKADVVISAFGSVLSDPKVKEALSPIKFNRWGLPEVD 351
Query: 430 -ENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHKYLSS 472
E + TS VFAGGD + T + ++ DG++A+ IHKY+ S
Sbjct: 352 PETMQTSEAWVFAGGDVVGLANTTVESVNDGKQASWYIHKYVQS 395
>dbj|BAA83927.1| (AB024555) GLTB [Bacillus halodurans]
Length = 201
Score = 94.8 bits (232), Expect = 2e-18
Identities = 67/204 (32%), Positives = 98/204 (47%), Gaps = 21/204 (10%)
Query: 7 ERVPTPERSVEERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIK--------GCPV 58
+R P++ ER +++ E L ++ RC+ C + GCPV
Sbjct: 11 KRETPPKKDPFERSKNWQEFTLLMPESALRQQGARCMDCGVPFCQTGTSMDGSGEIGCPV 70
Query: 59 NIDIPGFIRALRENRDDPDKAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGD 118
IP + + +EAL+ + +N+ P TGRVCP CEG C V D
Sbjct: 71 YNLIPEWNDLVYRGH------WKEALERLHKTNNFPEFTGRVCPAP--CEGSCTVAISDD 122
Query: 119 PVNIGKLERFVADYARQHGIEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGY 178
V I +E + + Q G ++ R R GK+VAV+G+GPAGL AA+L K G+
Sbjct: 123 AVAIKSMEFHIVERGFQEGW---IVPNPPRS--RTGKKVAVVGSGPAGLAAAAQLNKAGH 177
Query: 179 EVTIFEALHEPGGVLAYGIPEFRL 202
VT+FE GG+L YGIP+ +L
Sbjct: 178 WVTVFEREDRIGGLLTYGIPDVKL 201
>pir||C75513 probable ferredoxin/ferredoxin--NADP reductase - Deinococcus
radiodurans (strain R1)
>gi|6458182|gb|AAF10073.1|AE001908_8 (AE001908)
ferredoxin/ferredoxin--NADP reductase, putative
[Deinococcus radiodurans]
Length = 479
Score = 85.0 bits (207), Expect = 2e-15
Identities = 106/393 (26%), Positives = 157/393 (38%), Gaps = 91/393 (23%)
Query: 156 RVAVIGAGPAGLTCAAELAKMG---YEVTIFEALHEPGGVLAYGIPEFRLPKEIVKKEVE 212
RVAVIG+GP+G+ A L K EV +++ L P G++ YG+ L + V K E
Sbjct: 38 RVAVIGSGPSGIYAAEALLKQTEFPVEVDVYDRLPTPYGLVRYGVAPDHLTIKSVTKGFE 97
Query: 213 K-LKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEF 271
K L V+ NV G+ ++ E+ R +DA+ GA + R PG +L G SA EF
Sbjct: 98 KTLSDPRVRFLGNVEFGRELSAEDARAHYDAVMYTVGASSDRRLNIPGEDLQGSMSATEF 157
Query: 272 LTRINLMKAYKFPEYDT--PIKIGKRVAVIGAGNTAMDAARSALRLGAE----------- 318
+ N P+ T + + VAVIG GN A+D +R + E
Sbjct: 158 VAWYN-----GHPDAATREMLLSAEGVAVIGVGNVALDVSRILAKTVNELRGSDIAPHAL 212
Query: 319 ----------VWILYRR-------TRKEM------------------TAREEE------- 336
++IL RR T KE+ REEE
Sbjct: 213 PVLERSSVKDIYILGRRGPAQAAFTTKELREFGELAGAEPVVKPAEVQLREEEEAQVTDN 272
Query: 337 ---------------IKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDETG 381
+ +E V FLVSP + D G + +++E+ +L DE G
Sbjct: 273 VKKKNIEVLRDFAVRTQEGKERRVHLRFLVSPVEILDDGEGRVAGLKVERNRL---DEQG 329
Query: 382 RRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDENLMTSIPGVFA 441
+ TGE + + ++G L VP D +G I +E + PG +
Sbjct: 330 --NAVGTGEYETLPVQLVLRSVGY--RGVALPGVP--FDDRRGVIPNEEGRVQGRPGEYT 383
Query: 442 GGDAIRGEATVILAMGDGRKAAKAIHKYLSSSS 474
G RG + V+ G RK A +L S +
Sbjct: 384 AGWIKRGPSGVV---GTNRKDATDTVAHLLSDA 413
>emb|CAB60604.1| (AL132865) cDNA EST yk60c5.5 comes from this gene [Caenorhabditis
elegans]
Length = 458
Score = 83.5 bits (203), Expect = 5e-15
Identities = 52/169 (30%), Positives = 89/169 (51%), Gaps = 10/169 (5%)
Query: 147 IRGIKRNGK-RVAVIGAGPAGL-TCAAELAKMGYEVTIFEALHEPGGVLAYGI-PEFRLP 203
++ K +GK R+A++G+GPAG+ C L K + V +FE P G++ YG+ P+ +
Sbjct: 17 LKSRKLSGKPRLAIVGSGPAGMFACNGLLRKSNFSVDVFENSPVPFGLVRYGVAPDHQEV 76
Query: 204 KEIVKK--EVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPGVN 261
K ++ + + R +K+ NV +G+ +TF+EL +DA+ + G+ R PG +
Sbjct: 77 KNVINTFDAMFEKNRERLKLFCNVNIGRDITFDELTRGYDAVLLAYGSYKTRTLDIPGSD 136
Query: 262 LNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAAR 310
+ + S +EF+ N P TP V ++G GN A+D AR
Sbjct: 137 ASNVISGSEFVGWYN-----GVPNASTPDLTTSNVVIVGNGNVALDCAR 180
>emb|CAB60462.1| (AL132856) putative ferredoxin/ferredoxin-NADP reductase (EC
1.18.1.2) [Streptomyces coelicolor A3(2)]
Length = 454
Score = 79.2 bits (192), Expect = 9e-14
Identities = 53/173 (30%), Positives = 90/173 (51%), Gaps = 15/173 (8%)
Query: 156 RVAVIGAGPAGLTCAAELAKM------GYEVTIFEALHEPGGVLAYGI-PEFRLPKEIVK 208
RVA++G+GPAG+ A L K G + IFE + P G++ YG+ P+ K I+
Sbjct: 6 RVAIVGSGPAGIYAADALLKSEVAADPGVSIDIFERMPAPFGLIRYGVAPDHPRIKGIIT 65
Query: 209 KEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPGVNLNGIYSA 268
+ L + +++ NV V+ ++LR +D + TGA R PG++L+G Y A
Sbjct: 66 ALHQVLDKPQIRLFGNVNYPTDVSLDDLRAFYDGVIFATGATADRDLSLPGIDLDGSYGA 125
Query: 269 NEFLTRINLMKAYKFPEYDT--PIKIGKRVAVIGAGNTAMDAARSALRLGAEV 319
+F+ + P++ P++ ++VAV+G GN A+D AR + E+
Sbjct: 126 ADFVAWYD-----GHPDFPRTWPLE-AEKVAVLGVGNVALDIARVLAKTADEL 172
>gb|AAG13948.1|AF283287_1 (AF283287) ferrodoxin-NADP(+) reductase [Salvelinus fontinalis]
Length = 498
Score = 79.2 bits (192), Expect = 9e-14
Identities = 51/161 (31%), Positives = 79/161 (48%), Gaps = 6/161 (3%)
Query: 156 RVAVIGAGPAGLTCAAELAKM--GYEVTIFEALHEPGGVLAYGI-PEFRLPKEIVKKEVE 212
+V ++G GPAG A L K +V I+E L P G++ +G+ P+ K ++ +
Sbjct: 45 KVCIVGGGPAGFYTAQHLVKTRTDVQVDIYERLPVPFGLVRFGVAPDHPEVKNVINTFTQ 104
Query: 213 KLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPGVNLNGIYSANEFL 272
+ NV VGK VT EEL+E + A+ + GA R PG +L G+YSA +F+
Sbjct: 105 TARHARCSFHGNVRVGKDVTVEELQEAYHAVVLSYGAEGNRTMGVPGEDLAGVYSAKDFV 164
Query: 273 TRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSAL 313
N + + D + ++G GN A+D AR L
Sbjct: 165 GWYNGLPRNRELRPDLSC---ETAVILGQGNVALDVARMLL 202
>gb|AAC97377.1| (AF107264) glutamate synthase small subunit [Rhizobium etli]
Length = 471
Score = 76.1 bits (184), Expect = 8e-13
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 18 ERIRDFNEVNLGYTWELALREAERCLQCPKEYAPCIKGCPVNIDIPGFIRALRENRDDPD 77
+RIR F E + + ++A RC+ C Y GCPV+ IP + + N +
Sbjct: 29 DRIRHFREFTIPMSDPEVQKQAARCMDCGIPYCHGPTGCPVHNQIPDWNDLVYNNNWE-- 86
Query: 78 KAVREALKIIWDSNSLPAITGRVCPQEDQCEGVCVVGKVGDPVNIGKLERFVADYARQHG 137
A++ + +N+ P TGRVCP CE C + PV I +E+ +AD A + G
Sbjct: 87 ----AAIQNLHSTNNFPEFTGRVCPA--PCEEACTLNLEDAPVAIKTVEQAIADKAYELG 140
Query: 138 IEDELLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGG 191
+ Q + GK+VAVIG+GPAG+ A A + + +PGG
Sbjct: 141 ----FIRPQPATV-HTGKKVAVIGSGPAGMAAAQHSAAPATKCMSMN-VRQPGG 188
>pir||G69759 thioredoxin reductase homolog ycgT - Bacillus subtilis
>gi|2632613|emb|CAB12121.1| (Z99105) similar to
thioredoxin reductase [Bacillus subtilis]
Length = 336
Score = 75.7 bits (183), Expect = 1e-12
Identities = 89/331 (26%), Positives = 147/331 (43%), Gaps = 41/331 (12%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEF------RLPKEIVKKE 210
V +IG GP GL A + + E L + GG ++ PE +P K+
Sbjct: 10 VTIIGGGPIGLFTAFYCGMRELKTKVIEFLPKLGGKVSLFFPEKIIRDIGGIPGIAGKQL 69
Query: 211 VEKLKRLGVKIETNVLVGKTVT-FEELREEFDAIFIGTGAGTPRIYPWPGVNLNGI--YS 267
+E+LK + ++++ + VT FE L D + TG+ + Y + G+
Sbjct: 70 IEQLKEQAATFDPDIVLNQRVTGFERLD---DGTIVLTGSEGKKHYTRTVILACGMGTLE 126
Query: 268 ANEFLTRINLMKAYKFPEYDTPIKI----GKRVAVIGAGNTAMDAARSALRLGAEVWILY 323
NEF + A K Y K+ GKRV + G G+TA+D A + A V +++
Sbjct: 127 VNEFDSEDAARYAGKNLHYGVE-KLDAFKGKRVVISGGGDTAVDWANELEPIAASVTVVH 185
Query: 324 RRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDETGRR 383
RR +E E + ++ V+ + ++ GDE G +K++ + E+G+R
Sbjct: 186 RR--EEFGGMESSVTKMKQSSVRVLTPYRLEQLNGDEEG-IKSVTVCHT------ESGQR 236
Query: 384 RPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVD-EKGRIIVDENLMTSIPGVFAG 442
+ I E D II G K L + E ++ E+GR+ D ++ T++PGVF
Sbjct: 237 KDI--------EIDELIINHGF---KIDLGPMMEWGLEIEEGRVKADRHMRTNLPGVFVA 285
Query: 443 GDAIRGEATVILAMG---DGRKAAKAIHKYL 470
GDA E+ + L G +G A + YL
Sbjct: 286 GDAAFYESKLRLIAGGFTEGPTAVNSAKAYL 316
>sp|O05204|AHPF_STAAU ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi|1916317|gb|AAB51152.1|
(U92441) alkyl hydroperoxide reductase subunit F
[Staphylococcus aureus]
Length = 507
Score = 74.5 bits (180), Expect = 2e-12
Identities = 88/333 (26%), Positives = 135/333 (40%), Gaps = 55/333 (16%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVL--AYGIPEFRLPKEIVKKEVEKL 214
V ++G GPA + A A+ G I GG + GI F KE E
Sbjct: 208 VLIVGGGPASGSAAIYTARKGLRTGI--VADRIGGQVNDTAGIENFITVKETTGSEFSSN 265
Query: 215 KRLGV-KIETNVLVGKTVTFEELREEF-------------DAIFIGTGAGTPRIYPWPGV 260
+ + + + + G T E +E + I TGAG W +
Sbjct: 266 LAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAG------WRKL 319
Query: 261 NLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRLGAEVW 320
N+ G E L IN A+ P D P+ K VAVIG GN+ ++AA + V
Sbjct: 320 NIPG----EEQL--INKGVAF-CPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVT 372
Query: 321 IL-YRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPDE 379
+ + K ++ ++ +K N K E+ +GE
Sbjct: 373 LFEFASELKADNVLQDRLRSLSNVDIKT---------------NAKTTEV----VGEDHV 413
Query: 380 TG-RRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDENLMTSIPG 438
TG R + TGE ++ D + IG PN ++L EL +E+G I++D N T++PG
Sbjct: 414 TGIRYEDMNTGEEHLLNLDGIFVQIGLLPNTSWLNDAVEL--NERGEIVIDRNNNTNVPG 471
Query: 439 VFAGGDAI-RGEATVILAMGDGRKAAKAIHKYL 470
+FA GD + +I++MG G AA Y+
Sbjct: 472 IFAAGDVTDQKNKQIIISMGAGANAALNAFDYI 504
>pir||B71556 probable thioredoxin reductase - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328496|gb|AAC67690.1| (AE001284)
Thioredoxin Reductase [Chlamydia trachomatis]
Length = 351
Score = 73.7 bits (178), Expect = 4e-12
Identities = 90/353 (25%), Positives = 149/353 (41%), Gaps = 53/353 (15%)
Query: 142 LLEEQIRGIKRNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHE--PGGVLAY---- 195
LL + I G+ ++ +IG+GPAG T A ++ +FE GG L
Sbjct: 30 LLSKFILGVPMTHAKLVIIGSGPAGYTAAIYASRALLTPVLFEGFFSGIAGGQLMTTTEV 89
Query: 196 ----GIPEFRLPKEIVKKEVEKLKRLGVKIETNVLVG-----KTVTFEELREEF--DAIF 244
G PE L +++ + +R G ++ + + + + +E F DA
Sbjct: 90 ENFPGFPEGVLGHQLMDLMKTQAQRFGTQVLSKDITAVDFSVRPFVLKSGKETFTCDACI 149
Query: 245 IGTGAGTPRIYPWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNT 304
I TGA R+ PG N + + A + +PI K + V+G G++
Sbjct: 150 IATGASAKRL-SIPGAGDNEFWQKG--------VTACAVCDGASPIFRDKDLFVVGGGDS 200
Query: 305 AMDAARSALRLGAEVWILYRRTRKEMTAREEEI---KHAEEEGVKFMFLVSPKRFIGDEN 361
A++ A R G V++++RR T R ++ K E + F++ + GD
Sbjct: 201 ALEEAMFLTRYGKRVFVVHRRD----TLRASKVMVNKAQANEKIFFLWNSEIVKISGDT- 255
Query: 362 GNLKAIELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVD 421
+++I++ DET T ME AIG PN FL ++ +D
Sbjct: 256 -LVRSIDI----YNNVDET----------TTTMEAAGVFFAIGHQPNTAFLG--GQVALD 298
Query: 422 EKGRIIVDE-NLMTSIPGVFAGGDA-IRGEATVILAMGDGRKAAKAIHKYLSS 472
E G II ++ + TS+PGVFA GD + I + G G AA ++L +
Sbjct: 299 ENGYIITEKGSSRTSVPGVFAAGDVQDKYYRQAITSAGSGCMAALDAERFLEN 351
>pir||T00824 thioredoxin reductase homolog T32G6.20 - Arabidopsis thaliana
>gi|2618704|gb|AAB84351.1| (AC002510) putative
thioredoxin reductase [Arabidopsis thaliana]
Length = 535
Score = 71.8 bits (173), Expect = 2e-11
Identities = 79/340 (23%), Positives = 142/340 (41%), Gaps = 48/340 (14%)
Query: 155 KRVAVIGAGPAGLTCAAELAKMGYEVTIFEALH---EPGGVLAY--------GIPEFRLP 203
+ V +IG+GPAG T A A+ + +FE PGG L G P+
Sbjct: 84 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQMGGVPGGQLMTTTEVENFPGFPDGITG 143
Query: 204 KEIVKKEVEKLKRLGVKIETNVLVGKTVT-------FEELREEFDAIFIGTGAGTPRIYP 256
++++K ++ +R G ++ + +VT E + + +I TGA R+
Sbjct: 144 PDLMEKMRKQAERWGAELYPEDVESLSVTTAPFTVQTSERKVKCHSIIYATGATARRL-- 201
Query: 257 WPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRLG 316
+ EF +R + A + +P+ G+ +AV+G G+TA + A +
Sbjct: 202 -------RLPREEEFWSR--GISACAICDGASPLFKGQVLAVVGGGDTATEEALYLTKYA 252
Query: 317 AEVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGE 376
V +L RR + + ++ + + + + + G + I L ++ GE
Sbjct: 253 RHVHLLVRRDQLRASKAMQD-RVINNPNITVHYNTETVDVLSNTKGQMSGILLRRLDTGE 311
Query: 377 PDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDENLM-TS 435
E +E IG +PN L+ ++++D G ++V E TS
Sbjct: 312 ETE--------------LEAKGLFYGIGHSPNSQLLE--GQVELDSSGYVLVREGTSNTS 355
Query: 436 IPGVFAGGDAIRGE-ATVILAMGDGRKAAKAIHKYLSSSS 474
+ GVFA GD E + A G G AA + +YL+S++
Sbjct: 356 VEGVFAAGDVQDHEWRQAVTAAGSGCIAALSAERYLTSNN 395
>gb|AAB86519.1| (AC002329) putative thioredoxin reductase [Arabidopsis thaliana]
Length = 383
Score = 71.4 bits (172), Expect = 2e-11
Identities = 88/339 (25%), Positives = 144/339 (41%), Gaps = 50/339 (14%)
Query: 156 RVAVIGAGPAGLTCAAELAKMGYEVTIFEALHE----PGGVLAY--------GIPEFRLP 203
+V ++G+GPA T A ++ + +FE PGG L G PE L
Sbjct: 60 KVCIVGSGPAAHTAAIYASRAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILG 119
Query: 204 KEIVKKEVEKLKRLGVKIETNVLVGKTVT------FEELREEF-DAIFIGTGAGTPRI-Y 255
+IV+K ++ +R G I T + + F + R D++ I TGA R+ +
Sbjct: 120 IDIVEKFRKQSERFGTTIFTETVNKVDFSSKPFKLFTDSRTVLADSVIISTGAVAKRLSF 179
Query: 256 PWPGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRL 315
G G ++ + A + PI K + VIG G++AM+ A +
Sbjct: 180 TGSGEGNGGFWNRG--------ISACAVCDGAAPIFRNKPLVVIGGGDSAMEEANFLTKY 231
Query: 316 GAEVWILYRRT--RKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMK 373
G++V+I++RR R ++ + + + E + +V GDENG + L +K
Sbjct: 232 GSKVYIIHRRDTFRASKIMQQRALSNPKIEVIWNSAVVEA---YGDENGRV----LGGLK 284
Query: 374 LGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDE-NL 432
+ + + TG+ ++ AIG P FL +L++DE G ++
Sbjct: 285 V---------KNVVTGDVSDLKVSGLFFAIGHEPATKFLD--GQLELDEDGYVVTKPGTT 333
Query: 433 MTSIPGVFAGGDA-IRGEATVILAMGDGRKAAKAIHKYL 470
TS+ GVFA GD + I A G G AA YL
Sbjct: 334 KTSVVGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYL 372
>sp|Q9Z8M4|TRXB_CHLPN THIOREDOXIN REDUCTASE (TRXR) >gi|7431887|pir||C72093 thioredoxin
reductase CP0444 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39) >gi|4376591|gb|AAD18463.1|
(AE001616) Thioredoxin Reductase [Chlamydophila
pneumoniae CWL029] >gi|7189366|gb|AAF38283.1| (AE002205)
thioredoxin reductase [Chlamydophila pneumoniae AR39]
>gi|8978688|dbj|BAA98524.1| (AP002546) thioredoxin
reductase [Chlamydophila pneumoniae J138]
Length = 311
Score = 71.4 bits (172), Expect = 2e-11
Identities = 77/307 (25%), Positives = 129/307 (41%), Gaps = 46/307 (14%)
Query: 156 RVAVIGAGPAGLTCAAELAKMGYEVTIFEALHE--PGGVLAY--------GIPEFRLPKE 205
R+ +IG+GP+G T A ++ +FE GG L G PE L +
Sbjct: 5 RLIIIGSGPSGYTAAIYASRALLHPLLFEGFFSGISGGQLMTTTEVENFPGFPEGILGPK 64
Query: 206 IVKKEVEKLKRLGVKIETNVLVGKTVTFEEL----REEF---DAIFIGTGAGTPRIYPWP 258
++ E+ R G K ++ + +EE DA I TGA R+ P
Sbjct: 65 LMNNMKEQAVRFGTKTLAQDIISVDFSVRPFILKSKEETYSCDACIIATGASAKRL-EIP 123
Query: 259 GVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRLGAE 318
G + + + A + +PI K + VIG G++A++ A R G+
Sbjct: 124 GAGNDEFWQKG--------VTACAVCDGASPIFKNKDLYVIGGGDSALEEALYLTRYGSH 175
Query: 319 VWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEPD 378
V++++RR K ++ E + E + F++ + GD +++++++
Sbjct: 176 VYVVHRRD-KLRASKAMEARAQNNEKITFLWNSEIVKISGD--SIVRSVDIKN------- 225
Query: 379 ETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDENL-MTSIP 437
+ T E E AIG PN FL +L +DE G I+ ++ TS+P
Sbjct: 226 -------VQTQEITTREAAGVFFAIGHKPNTDFLG--GQLTLDESGYIVTEKGTSKTSVP 276
Query: 438 GVFAGGD 444
GVFA GD
Sbjct: 277 GVFAAGD 283
>emb|CAB57297.1| (AJ243598) NADH oxidase [Sulfolobus solfataricus]
Length = 332
Score = 71.4 bits (172), Expect = 2e-11
Identities = 86/327 (26%), Positives = 139/327 (42%), Gaps = 66/327 (20%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRL----------PKEI 206
+ VIG GP GL + + +A E GG L PE + E+
Sbjct: 6 IVVIGGGPVGLFGTFYAGLRDMKTLLIDAQDELGGQLVSLYPEKIVYDVGGLAGIQAYEL 65
Query: 207 VKKEVEKLKRLGVKIETNVL---VGKT------VTFEELREEFDAIFIGTGAGTPRIYPW 257
++ +E+ K G I+ N L + KT V ++ + IFI G G +I P
Sbjct: 66 AQRLIEQAKMFGPDIKVNELADMIEKTNDNMWIVKTDKATYKTKTIFIAAGIG--KIVP- 122
Query: 258 PGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRLGA 317
+ G E+ R + +++ GKRV ++G G++A+D A + +
Sbjct: 123 ---SRLGAKGEIEYENRGVYYTVRRKKDFE-----GKRVLIVGGGDSAVDWALTLAPVAK 174
Query: 318 EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSP-------KRFIGDENGNLKAIELE 370
V +++RR + A E VK +F V+ K GD N +AI +
Sbjct: 175 SVTLIHRRDQLR----------AHERSVKELFRVANVYVWHELKEVKGDGNKVTQAIIFD 224
Query: 371 KMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGR-IIVD 429
T E V++ D+ II+IG K L +P+ V KGR I+V+
Sbjct: 225 NR---------------TKEEKVLDVDSVIISIGY---KGDLGNIPKWGVTMKGRDIVVN 266
Query: 430 ENLMTSIPGVFAGGDAIRGEATVILAM 456
+ T++PGV+AGGD ++ E + LA+
Sbjct: 267 GRMETNLPGVYAGGDIVQMEGSPKLAL 293
>gb|AAK42391.1| Thioredoxin reductase (trxB-1) [Sulfolobus solfataricus]
Length = 332
Score = 71.0 bits (171), Expect = 3e-11
Identities = 86/327 (26%), Positives = 139/327 (42%), Gaps = 66/327 (20%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLAYGIPEFRL----------PKEI 206
+ VIG GP GL + + +A E GG L PE + E+
Sbjct: 6 IVVIGGGPVGLFGTFYAGLRDMKTLLIDAQDELGGQLVSLYPEKIVYDVGGLAGIQAYEL 65
Query: 207 VKKEVEKLKRLGVKIETNVL---VGKT------VTFEELREEFDAIFIGTGAGTPRIYPW 257
++ +E+ K G I+ N L + KT V ++ + IFI G G +I P
Sbjct: 66 AQRLIEQAKMFGPDIKVNELADMIEKTNDNMWIVKTDKATYKTKTIFIAAGIG--KIVP- 122
Query: 258 PGVNLNGIYSANEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRLGA 317
+ G E+ R + +++ GKRV ++G G++A+D A + +
Sbjct: 123 ---SRLGAKGEIEYENRGVYYTVRRKKDFE-----GKRVLIVGGGDSAVDWALTLAPVAK 174
Query: 318 EVWILYRRTRKEMTAREEEIKHAEEEGVKFMFLVSP-------KRFIGDENGNLKAIELE 370
V +++RR + A E VK +F V+ K GD N +AI +
Sbjct: 175 SVTLIHRRDQFR----------AHERSVKELFRVANVYVWHELKEVKGDGNKVTQAIIFD 224
Query: 371 KMKLGEPDETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGR-IIVD 429
T E V++ D+ II+IG K L +P+ V KGR I+V+
Sbjct: 225 NR---------------TKEEKVLDVDSVIISIGY---KGDLGNIPKWGVTMKGRDIVVN 266
Query: 430 ENLMTSIPGVFAGGDAIRGEATVILAM 456
+ T++PGV+AGGD ++ E + LA+
Sbjct: 267 GRMETNLPGVYAGGDIVQMEGSPKLAL 293
>gb|AAK42563.1| Thioredoxin reductase (trxB-3) [Sulfolobus solfataricus]
Length = 323
Score = 71.0 bits (171), Expect = 3e-11
Identities = 92/337 (27%), Positives = 143/337 (42%), Gaps = 59/337 (17%)
Query: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVLA--------YGIPEFRLP----- 203
V ++G GPA A A+ Y + PGG L G+ E +
Sbjct: 18 VIIVGLGPAAYGAALYSAR--YMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKV 75
Query: 204 --KEIVKKEVEKLKRLGVKIET--NVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPG 259
K I K EV L + KIE + V KT E + D++ +G G ++
Sbjct: 76 FNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKA--DSVILGIGVKRRKL----- 128
Query: 260 VNLNGIYSANEFLTR-INLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSALRLGAE 318
G+ EF R I+ D P+ + VAVIG G++A++ A +
Sbjct: 129 ----GVPGEQEFAGRGISYCSVC-----DAPLFKNRVVAVIGGGDSALEGAEILSSYSTK 179
Query: 319 VWILYRR-TRKEMTAREEEIKHAEEEGVKFMFLVSPKRFIGDENGNLKAIELEKMKLGEP 377
V++++RR T K E +K ++ V+F+ K GD+ +K + +E +K GE
Sbjct: 180 VYLIHRRDTFKAQPIYVETVK--KKPNVEFVLNSVVKEIKGDKV--VKQVVVENLKTGEI 235
Query: 378 DETGRRRPIPTGETFVMEFDTAIIAIGQTPNKTFLQTVPELKVDEKGRIIVDENLMTSIP 437
E + + I IG P F ++ ++ D G I VDE + TS+P
Sbjct: 236 KE--------------LNVNGVFIEIGFDPPTDFAKS-NGIETDTNGYIKVDEWMRTSVP 280
Query: 438 GVFAGGD---AIRGEATVILAMGDGRKAAKAIHKYLS 471
GVFA GD A G VI A+ G AA + ++Y++
Sbjct: 281 GVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVT 317
>emb|CAC01564.1| (AL391039) 2,4-dienoyl-CoA reductase [NADPH] [Streptomyces
coelicolor A3(2)]
Length = 671
Score = 70.6 bits (170), Expect = 4e-11
Identities = 55/160 (34%), Positives = 74/160 (45%), Gaps = 22/160 (13%)
Query: 152 RNGKRVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVL--AYGIPEFRLPKEIVKK 209
R KRVAV+GAGPAGL CA A+ G+EVT+F+A E GG L A IP + E ++
Sbjct: 373 RRRKRVAVVGAGPAGLACAVSAAERGHEVTLFDAASEIGGQLNVARKIPGKQEFDETLRY 432
Query: 210 EVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPGVNLNGIYSAN 269
+L GV + N VG D + + TG TPR PGV+ +
Sbjct: 433 FRTQLAAHGVDVRLNTRVGVADL-----TGHDEVVVATGV-TPRTPDIPGVDHPSVVGYL 486
Query: 270 EFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAA 309
+ L +G+RVA++GAG D A
Sbjct: 487 DVLR--------------DAAPVGERVAILGAGGIGFDVA 512
>pir||A70920 probable adrenodoxin and NADPH ferredoxin reductase - Mycobacterium
tuberculosis (strain H37RV) >gi|2076681|emb|CAB08363.1|
(Z95150) fprA [Mycobacterium tuberculosis]
Length = 456
Score = 69.9 bits (168), Expect = 6e-11
Identities = 53/165 (32%), Positives = 81/165 (48%), Gaps = 11/165 (6%)
Query: 157 VAVIGAGPAGLTCAAELAK-------MGYEVTIFEALHEPGGVLAYGI-PEFRLPKEIVK 208
+A++G+GP+ AA L K + V + E L P G++ G+ P+ K I K
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 65
Query: 209 KEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPGVNLNGIYSA 268
+ + + + NV+VG+ V EL E +DA+ GA + R+ PG +L G +A
Sbjct: 66 QFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAA 125
Query: 269 NEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSAL 313
+F+ N A+ E +P G R VIG GN A+D AR L
Sbjct: 126 VDFVGWYN---AHPHFEQVSPDLSGARAVVIGNGNVALDVARILL 167
>pir||T45314 probable ferredoxin [imported] - Mycobacterium leprae
>gi|2326694|emb|CAB11006.1| (Z98271) possible ferredoxin
[Mycobacterium leprae]
Length = 456
Score = 69.9 bits (168), Expect = 6e-11
Identities = 80/301 (26%), Positives = 126/301 (41%), Gaps = 35/301 (11%)
Query: 157 VAVIGAGPAGLTCAAELAK-------MGYEVTIFEALHEPGGVLAYGI-PEFRLPKEIVK 208
+A++G+GP+G AA + K + V + E L P G++ G+ P+ K I K
Sbjct: 9 IAIVGSGPSGFFAAASVLKAADASDEINVAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 68
Query: 209 KEVEKLKRLGVKIETNVLVGKTVTFEELREEFDAIFIGTGAGTPRIYPWPGVNLNGIYSA 268
+ + + + NV+VGK + EL E +DA+ GA + R PG +L G +A
Sbjct: 69 QFEKTAEDPRFRFFGNVIVGKHIEPAELAERYDAVIYAVGAQSDRALNIPGEDLPGSIAA 128
Query: 269 NEFLTRINLMKAYKFPEYDTPIKIGKRVAVIGAGNTAMDAARSAL--------------- 313
+F+ N A+ +P G R VIG GN A+D R +
Sbjct: 129 VDFVGWYN---AHPNFHERSPDLSGSRAVVIGNGNVALDVTRILITDPDVLAFTDIADHA 185
Query: 314 ------RLGAEVWILYRRTRKEMTAREEEIKH-AEEEGVKFMFLVSPKRFIGDENGNLKA 366
R EV I+ RR + E++ A+ EGV + + I DEN A
Sbjct: 186 LESLRPRGIEEVVIVGRRGPLQTAFTTLELRELADIEGVDVLVDPAQLEGISDENA-AAA 244
Query: 367 IELEKMKLGEPDETGRRRPIPTGETFVMEFDTAIIAI-GQTPNKTFLQTVPELKVDEKGR 425
+ + + + R P P V F T+ I I G+ + + EL D+ GR
Sbjct: 245 GKTTRQNIKVLRDYTVRTPKPGHRRIVFRFLTSPIEIKGKGKVERIVLGQNELVTDDNGR 304
Query: 426 I 426
+
Sbjct: 305 V 305
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183761778
Number of Sequences: 2977
Number of extensions: 8359026
Number of successful extensions: 26499
Number of sequences better than 1.0e-10: 82
Number of HSP's better than 0.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 25927
Number of HSP's gapped (non-prelim): 122
length of query: 474
length of database: 189,106,746
effective HSP length: 56
effective length of query: 418
effective length of database: 155,591,474
effective search space: 65037236132
effective search space used: 65037236132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)