BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1741 (PAB1741) DE:Hypothetical protein
         (156 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75141 hypothetical protein PAB1741 - Pyrococcus abyssi (st...   299  1e-80
pir||E71117 hypothetical protein PH0708 - Pyrococcus horikoshii ...   149  1e-35
pir||B75001 hypothetical protein PAB1019 - Pyrococcus abyssi (st...   107  6e-23
pir||G71162 hypothetical protein PH0500 - Pyrococcus horikoshii ...   100  1e-20

>pir||F75141 hypothetical protein PAB1741 - Pyrococcus abyssi (strain Orsay)
           >gi|5458358|emb|CAB49847.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 156
           
 Score =  299 bits (757), Expect = 1e-80
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   MRMLPERISFGPISFLKITRKQNKEILEFILAEFQVFLPLPAVNSYLMTKGLLGRDIDEE 60
           MRMLPERISFGPISFLKITRKQNKEILEFILAEFQVFLPLPAVNSYLMTKGLLGRDIDEE
Sbjct: 1   MRMLPERISFGPISFLKITRKQNKEILEFILAEFQVFLPLPAVNSYLMTKGLLGRDIDEE 60

Query: 61  IKILREVFTIVEVSDQLIRKMAELGGALVKEGIVPNFSDLITAASAIITESLLVVNDKKV 120
           IKILREVFTIVEVSDQLIRKMAELGGALVKEGIVPNFSDLITAASAIITESLLVVNDKKV
Sbjct: 61  IKILREVFTIVEVSDQLIRKMAELGGALVKEGIVPNFSDLITAASAIITESLLVVNDKKV 120

Query: 121 KDYEIFSKYGLDVISYTKFLEEIESLAEEEAKRVAK 156
           KDYEIFSKYGLDVISYTKFLEEIESLAEEEAKRVAK
Sbjct: 121 KDYEIFSKYGLDVISYTKFLEEIESLAEEEAKRVAK 156


>pir||E71117 hypothetical protein PH0708 - Pyrococcus horikoshii
           >gi|3257116|dbj|BAA29799.1| (AP000003) 156aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 156
           
 Score =  149 bits (373), Expect = 1e-35
 Identities = 74/153 (48%), Positives = 110/153 (71%), Gaps = 1/153 (0%)

Query: 1   MRMLPERISFGPISFLKITRKQNKEILEFILAEFQVFLPLPAVNSYLMTKGLLGRDIDEE 60
           M  +  +I F P SF+++TRKQNKE+LEF+LAEF+++LP+  V++YL+ K   G+D  +E
Sbjct: 1   MTPMLRKICFDPSSFIQLTRKQNKELLEFVLAEFEIYLPITTVHAYLLAKSFKGKDPKKE 60

Query: 61  IKILREVFTIVEVSDQLIRKMAELGGALVKEGIVPNFSDLITAASAIITESLLVVNDKKV 120
           ++ LR +  IV+++D L+ ++AE+  +L+K+G   +  DLITA SAI ++SLLVV+    
Sbjct: 61  VQKLRGIVRIVDLTDDLLGEIAEIDASLIKDGYFLSLEDLITAVSAIASKSLLVVSGNAE 120

Query: 121 KDYEIFSKYGLDVISYTKFLEEIESLAEEEAKR 153
           K Y    KYGLD ++Y KFLEE+E LA EEAKR
Sbjct: 121 K-YSPLRKYGLDCVNYDKFLEEVEVLAREEAKR 152


>pir||B75001 hypothetical protein PAB1019 - Pyrococcus abyssi (strain Orsay)
           >gi|5458962|emb|CAB50448.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 149
           
 Score =  107 bits (265), Expect = 6e-23
 Identities = 52/147 (35%), Positives = 95/147 (64%), Gaps = 2/147 (1%)

Query: 4   LPERISFGPISFLKITRKQNKEILEFILAEFQVFLPLPAVNSYLMTKGLLGRDIDEEIKI 63
           LP  I+F  ++ LK+  ++NK +LE  LA+F V+L +  V  YL  +  L R+++ E ++
Sbjct: 3   LPPDITFDSVTLLKMHSEKNKRLLEITLAKFTVYLSMLTVQRYLTARAYLKRNVELEFEV 62

Query: 64  LREVFTIVEVSDQLIRKMAELGGALVKEGIVPNFSDLITAASAIITESLLVVNDKKVKDY 123
           L++++ IV VS+++I + +++   L+++G+  +  D+ITA +AI T SLL+ ++   K Y
Sbjct: 63  LKDIYNIVPVSEEIILRASKIEANLIRKGVFLDLEDIITAVTAIETGSLLITDEP--KKY 120

Query: 124 EIFSKYGLDVISYTKFLEEIESLAEEE 150
           E   ++GLD +   KFL E+E + E+E
Sbjct: 121 EPIRRFGLDTMPLDKFLREVELMVEKE 147


>pir||G71162 hypothetical protein PH0500 - Pyrococcus horikoshii
           >gi|3256905|dbj|BAA29588.1| (AP000002) 149aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 149
           
 Score =  100 bits (246), Expect = 1e-20
 Identities = 54/147 (36%), Positives = 89/147 (59%), Gaps = 2/147 (1%)

Query: 4   LPERISFGPISFLKITRKQNKEILEFILAEFQVFLPLPAVNSYLMTKGLLGRDIDEEIKI 63
           LP  I+F  ++ +K+  +  K ILE  LA+F V L +  V  YL  +  L ++I+ E +I
Sbjct: 3   LPPDITFDSLALIKMHSQNMKRILEVTLAKFTVNLSIVTVYRYLTARAYLKKNIEAEFEI 62

Query: 64  LREVFTIVEVSDQLIRKMAELGGALVKEGIVPNFSDLITAASAIITESLLVVNDKKVKDY 123
           L++++ IV + D +  K A++   L+K+ I  +  D+ITA +AI T SLLV +D   K Y
Sbjct: 63  LKDIYNIVPLLDDIAIKAAQIEANLIKKEITLDMEDIITATTAIYTNSLLVTDDP--KRY 120

Query: 124 EIFSKYGLDVISYTKFLEEIESLAEEE 150
           E   ++GLD +   KF++E+E + E+E
Sbjct: 121 EPIRRFGLDTMPLDKFIKEVELMVEKE 147


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.367 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49343729
Number of Sequences: 2977
Number of extensions: 1835838
Number of successful extensions: 5451
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5444
Number of HSP's gapped (non-prelim): 4
length of query: 156
length of database: 189,106,746
effective HSP length: 58
effective length of query: 98
effective length of database: 154,394,500
effective search space: 15130661000
effective search space used: 15130661000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)