BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1744 (PAB1744) DE:VIRR RELATED PROTEIN
(226 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75141 virr related protein PAB1744 - Pyrococcus abyssi (st... 462 e-129
sp|O58783|YA56_PYRHO HYPOTHETICAL PROTEIN PH1056 >gi|7429983|pir... 208 4e-53
sp|Q58978|YF83_METJA HYPOTHETICAL PROTEIN MJ1583 >gi|2128952|pir... 148 4e-35
gi|11497857 conserved hypothetical protein [Archaeoglobus fulgid... 83 3e-15
sp|O68638|RCSF_PSEAE RCSF PROTEIN >gi|2970668|gb|AAC62539.1| (AF... 78 7e-14
sp|O27825|YH97_METTH HYPOTHETICAL PROTEIN MTH1797 >gi|7429985|pi... 78 9e-14
pir||D72406 conserved hypothetical protein - Thermotoga maritima... 76 3e-13
pir||H72721 hypothetical protein APE0313 - Aeropyrum pernix (str... 76 4e-13
pir||G83221 conserved hypothetical protein PA3388 [imported] - P... 71 9e-12
pir||G75107 virr related PAB0452 - Pyrococcus abyssi (strain Ors... 71 1e-11
gb|AAF59182.1| (AE003839) CG12822 gene product [Drosophila melan... 70 2e-11
gi|11498045 conserved hypothetical protein [Archaeoglobus fulgid... 69 6e-11
>pir||C75141 virr related protein PAB1744 - Pyrococcus abyssi (strain Orsay)
>gi|5458355|emb|CAB49844.1| (AJ248285) VIRR RELATED
PROTEIN [Pyrococcus abyssi]
Length = 226
Score = 462 bits (1177), Expect = e-129
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MQMLFKGANGSNSMSFKLIPIGYIRKGADTFIEILPEFLDAIEGLQDGDWIKLILWFHKS 60
MQMLFKGANGSNSMSFKLIPIGYIRKGADTFIEILPEFLDAIEGLQDGDWIKLILWFHKS
Sbjct: 1 MQMLFKGANGSNSMSFKLIPIGYIRKGADTFIEILPEFLDAIEGLQDGDWIKLILWFHKS 60
Query: 61 DKPELRKILKVHPYGNPKNPLRGVFATRSPYRPNPLALYTVKIREISDNRIYIDWIDADD 120
DKPELRKILKVHPYGNPKNPLRGVFATRSPYRPNPLALYTVKIREISDNRIYIDWIDADD
Sbjct: 61 DKPELRKILKVHPYGNPKNPLRGVFATRSPYRPNPLALYTVKIREISDNRIYIDWIDADD 120
Query: 121 GTPVVDIKIFVERYDCPNESIEEREVNIPKGRIIGELNIIPRKSDHLDELEEVSPDEFDA 180
GTPVVDIKIFVERYDCPNESIEEREVNIPKGRIIGELNIIPRKSDHLDELEEVSPDEFDA
Sbjct: 121 GTPVVDIKIFVERYDCPNESIEEREVNIPKGRIIGELNIIPRKSDHLDELEEVSPDEFDA 180
Query: 181 VIIELGNKTTVLSARELTELIEVLKEIYDELPVEIKDKLRVNRPQD 226
VIIELGNKTTVLSARELTELIEVLKEIYDELPVEIKDKLRVNRPQD
Sbjct: 181 VIIELGNKTTVLSARELTELIEVLKEIYDELPVEIKDKLRVNRPQD 226
>sp|O58783|YA56_PYRHO HYPOTHETICAL PROTEIN PH1056 >gi|7429983|pir||D71099 hypothetical
protein PH1056 - Pyrococcus horikoshii
>gi|3257471|dbj|BAA30154.1| (AP000004) 136aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 136
Score = 208 bits (525), Expect = 4e-53
Identities = 93/128 (72%), Positives = 111/128 (86%), Gaps = 3/128 (2%)
Query: 15 SFKLIPIGYIRKGADTFIEILPEFLDAIEGLQDGDWIKLILWFHKSDKPELRKILKVHPY 74
+FK++P+GYIRK + FIEILPEF + +EGL++GDWIKLILWFHKSD PELR+ILKVHP+
Sbjct: 5 AFKIVPVGYIRKEKNVFIEILPEFREGMEGLREGDWIKLILWFHKSDTPELRRILKVHPH 64
Query: 75 GNPKNPLRGVFATRSPYRPNPLALYTVKIREISDNRIYIDWIDADDGTPVVDIKIFVERY 134
GNP+NPL GVFATRSP+RPNP YTVK+ +I NRIYIDWIDA+DGTPV DIKIF ERY
Sbjct: 65 GNPENPLTGVFATRSPFRPNP---YTVKVHKIEGNRIYIDWIDAEDGTPVSDIKIFPERY 121
Query: 135 DCPNESIE 142
DCP E+ +
Sbjct: 122 DCPKENYQ 129
>sp|Q58978|YF83_METJA HYPOTHETICAL PROTEIN MJ1583 >gi|2128952|pir||F64497 hypothetical
protein MJ1583 - Methanococcus jannaschii
>gi|1500478|gb|AAB99603.1| (U67598) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 126
Score = 148 bits (371), Expect = 4e-35
Identities = 68/123 (55%), Positives = 94/123 (76%), Gaps = 1/123 (0%)
Query: 16 FKLIPIGYIRKGAD-TFIEILPEFLDAIEGLQDGDWIKLILWFHKSDKPELRKILKVHPY 74
+ L PIG + + + T + I EF++ ++GL++GD+I +++WFHK+D E RKILKVHP
Sbjct: 2 YYLKPIGVVEQNENYTVLNIFDEFVEGLDGLKEGDYIIVLVWFHKNDSEEKRKILKVHPR 61
Query: 75 GNPKNPLRGVFATRSPYRPNPLALYTVKIREISDNRIYIDWIDADDGTPVVDIKIFVERY 134
G+ NPL+GVFATRSPYRPNP+ YTVKI +I N+I+ID IDA + TP++DIKIF E+
Sbjct: 62 GDINNPLKGVFATRSPYRPNPIGKYTVKIHKIYRNKIFIDKIDAYNETPIIDIKIFSEKL 121
Query: 135 DCP 137
DCP
Sbjct: 122 DCP 124
>gi|11497857 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3915351|sp|O29998|Y241_ARCFU HYPOTHETICAL PROTEIN
AF0241 >gi|7429984|pir||A69280 conserved hypothetical
protein AF0241 - Archaeoglobus fulgidus
>gi|2650400|gb|AAB90992.1| (AE001089) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 139
Score = 82.7 bits (201), Expect = 3e-15
Identities = 42/108 (38%), Positives = 64/108 (58%), Gaps = 6/108 (5%)
Query: 32 IEILPEFLDAIEGLQDGDWIKLILWFHKSDKPELRKILKVHPYGNPKNPLRGVFATRSPY 91
I I E+ D + +++ I ++ W K+ + +LR + P G + RGVF TRSP
Sbjct: 32 IAIFDEYADGLHKIENLRHIIVLYWMDKASRDKLRVV----PPGETEE--RGVFTTRSPS 85
Query: 92 RPNPLALYTVKIREISDNRIYIDWIDADDGTPVVDIKIFVERYDCPNE 139
RPNP+ L V+I E+ NR+ + W+DA DG+PV+DIK + DC N+
Sbjct: 86 RPNPIGLCVVEILEVERNRLKVRWLDALDGSPVIDIKKYSPEIDCVNQ 133
>sp|O68638|RCSF_PSEAE RCSF PROTEIN >gi|2970668|gb|AAC62539.1| (AF052586) regulator
protein [Pseudomonas aeruginosa]
Length = 240
Score = 78.4 bits (190), Expect = 7e-14
Identities = 53/142 (37%), Positives = 73/142 (51%), Gaps = 24/142 (16%)
Query: 14 MSFKLIPIGYIRK----------------GADTFIEILPEFL--DAIEGLQDGDWIKLIL 55
MS + PIG++R A +E+LP F DA+EGL+ + LI
Sbjct: 1 MSHSISPIGHVRSCFKEKFAIPRQPQLAPAATGVLELLPPFDTGDAVEGLEQVSHVWLIF 60
Query: 56 WFHKS--DKPELRKILKVHPYGNPKNPLRGVFATRSPYRPNPLALYTVKIREISDNRIYI 113
FH++ DKP L KV P N GVFATR+ +RPN L VK+ ++ R+++
Sbjct: 61 LFHQALEDKPRL----KVRPPRLGGNQSMGVFATRATHRPNGLGQSVVKLEKVEPGRLWL 116
Query: 114 DWIDADDGTPVVDIKIFVERYD 135
ID DGTPV+DIK +V D
Sbjct: 117 SGIDLLDGTPVIDIKPYVPYAD 138
>sp|O27825|YH97_METTH HYPOTHETICAL PROTEIN MTH1797 >gi|7429985|pir||A69107 conserved
hypothetical protein MTH1797 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622929|gb|AAB86263.1| (AE000934) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 137
Score = 78.0 bits (189), Expect = 9e-14
Identities = 47/139 (33%), Positives = 76/139 (53%), Gaps = 22/139 (15%)
Query: 12 NSMSFKLIPIGYIRK---------------GADTFIEILPEFLDAIEGLQDGDWIKLILW 56
+ M ++ P+G +R ++ I I PE+LDA++GL+ I ++ W
Sbjct: 2 SDMEIRIRPVGVVRSPFKTRSDAPAQGRFSSEESEIHIFPEYLDAVDGLELFSHIFVLYW 61
Query: 57 FHKSDKPELRKILKVHPYGNPKNPLRGVFATRSPYRPNPLALYTVKIREISDNRIYIDWI 116
H ++ R +L+V P G K RGVF+TR+P RPNP+ L V++ E + + + +
Sbjct: 62 LHLAE----RNVLRVVPRGKRKK--RGVFSTRAPARPNPVGLCLVELLECGE-ILRVRGL 114
Query: 117 DADDGTPVVDIKIFVERYD 135
DA DG+PV+DIK + E D
Sbjct: 115 DALDGSPVIDIKPYYEDID 133
>pir||D72406 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980684|gb|AAD35280.1|AE001704_1 (AE001704)
conserved hypothetical protein [Thermotoga maritima]
Length = 143
Score = 76.1 bits (184), Expect = 3e-13
Identities = 35/105 (33%), Positives = 64/105 (60%), Gaps = 6/105 (5%)
Query: 32 IEILPEFLDAIEGLQDGDWIKLILWFHKSDKPELRKILKVHPYGNPKNPLRGVFATRSPY 91
IE+ PE+ + ++ ++ + ++ W ++++ L + + P+ ++ GVFATRSP+
Sbjct: 33 IELFPEYEEGLKDIETCTHLIVLYWLDRANRDRL---IAIPPFDKREH---GVFATRSPH 86
Query: 92 RPNPLALYTVKIREISDNRIYIDWIDADDGTPVVDIKIFVERYDC 136
RPNP+ VK+ E+ + ++ +DA DGTPVVDIK + + DC
Sbjct: 87 RPNPIGFSVVKLLEVRGRELVVEGLDAVDGTPVVDIKPYSSKIDC 131
>pir||H72721 hypothetical protein APE0313 - Aeropyrum pernix (strain K1)
>gi|5103952|dbj|BAA79268.1| (AP000059) 168aa long
hypothetical protein [Aeropyrum pernix]
Length = 168
Score = 75.7 bits (183), Expect = 4e-13
Identities = 52/141 (36%), Positives = 73/141 (50%), Gaps = 19/141 (13%)
Query: 27 GADTFIEILPEFLDAIEGLQDGDWIKLILWFHKSDKPELRKILKVHPYGNPKNPLR---- 82
G + FIE+LPE+ ++GL I +I + HKS + L+V P G + R
Sbjct: 30 GVEGFIEVLPEYAPGLDGLAGFSHIIVIAYLHKSKG----RALRVRPRGLLRLGFRLEDL 85
Query: 83 ---GVFATRSPYRPNPLALYTVKIREISDNRIYIDWIDADDGTPVVDIKIF-----VERY 134
GVFAT SP RPNPLAL ++ +I R+ + +D DGTPV+DIK + VE
Sbjct: 86 PEVGVFATDSPSRPNPLALTIARLLDIEGRRLRVSGLDLYDGTPVLDIKPYTPSRRVEDL 145
Query: 135 DCPN---ESIEEREVNIPKGR 152
P+ E +EE P+ R
Sbjct: 146 SLPSWYKELLEEASRRDPRVR 166
>pir||G83221 conserved hypothetical protein PA3388 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|5833452|gb|AAD53515.1|AF148964_2 (AF148964) RcsF
[Pseudomonas aeruginosa]
>gi|9949524|gb|AAG06776.1|AE004760_4 (AE004760)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 231
Score = 71.4 bits (172), Expect = 9e-12
Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 24/142 (16%)
Query: 14 MSFKLIPIGYIRK----------------GADTFIEILPEF--LDAIEGLQDGDWIKLIL 55
M+ + PIGYIR A +E+LP F ++A+EGL+ + L+
Sbjct: 1 MTHSVSPIGYIRSCFMEKFAIPRQPLLAPAARGTLELLPPFDQVEALEGLEQVSHVWLLF 60
Query: 56 WFHKS--DKPELRKILKVHPYGNPKNPLRGVFATRSPYRPNPLALYTVKIREISDNRIYI 113
FH++ DKP L KV P N GVFATR+ +RPN + V++ R+++
Sbjct: 61 LFHQALEDKPRL----KVRPPRLGGNRSLGVFATRATHRPNGIGQSVVRLEGFEAGRLWL 116
Query: 114 DWIDADDGTPVVDIKIFVERYD 135
ID DGTPV+DIK +V D
Sbjct: 117 SGIDLLDGTPVLDIKPYVPYAD 138
>pir||G75107 virr related PAB0452 - Pyrococcus abyssi (strain Orsay)
>gi|5458087|emb|CAB49576.1| (AJ248285) virR related
[Pyrococcus abyssi]
Length = 184
Score = 71.0 bits (171), Expect = 1e-11
Identities = 45/126 (35%), Positives = 70/126 (54%), Gaps = 7/126 (5%)
Query: 26 KGADTFIEILPEFLDAIEGLQDGDWIKLILWFHKSDKPELRKILKVHPYGNPKNPLRGVF 85
K + +E+ PEF + ++ +++ I LI FH++ K L V PY + + GVF
Sbjct: 33 KDIEGTVEVFPEFSEGLKDIEEFSHIILIYHFHRAKF----KGLLVEPYMHEEK--HGVF 86
Query: 86 ATRSPYRPNPLALYTVKIREISDNRIYIDWIDADDGTPVVDIKIFVERYDC-PNESIEER 144
ATR+P RPNP+ + V++ E N + I +D DGTP++DIK +V +D N I
Sbjct: 87 ATRAPARPNPIGISVVRLVERKGNILRIRDVDILDGTPLLDIKPYVPEFDVRENVRIGWL 146
Query: 145 EVNIPK 150
E N+ K
Sbjct: 147 EKNVHK 152
>gb|AAF59182.1| (AE003839) CG12822 gene product [Drosophila melanogaster]
Length = 412
Score = 70.2 bits (169), Expect = 2e-11
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 6/140 (4%)
Query: 41 AIEGLQDGDWIKLILWFHKSDKPELRKILKVHPYGNPKNPLRGVFATRSPYRPNPLALYT 100
++EGL+D + LI FH+++ K+ G GVF+TRSP+RP P+ L
Sbjct: 143 SLEGLEDFSHLWLIYHFHRNNSHPKAKVAPPRLGGERV----GVFSTRSPHRPCPIGLSL 198
Query: 101 VKIREISDNRIYIDWIDADDGTPVVDIKIFVERYDCPNESIEEREVNIPKGRIIGELNII 160
V+I +I + I D DGTPV+DIK ++ YD P+ S++ ++ + + +L +
Sbjct: 199 VEIEKIENATISFFGTDMVDGTPVLDIKPYIPHYDAPSLSVDSGTLDENQAEM--QLKFL 256
Query: 161 PRKSDHLDELEEVSPDEFDA 180
PR E S D +D+
Sbjct: 257 PRTGRTSVGPHESSLDFYDS 276
>gi|11498045 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3915359|sp|O29816|Y433_ARCFU HYPOTHETICAL PROTEIN
AF0433 >gi|7483009|pir||A69304 conserved hypothetical
protein AF0433 - Archaeoglobus fulgidus
>gi|2650198|gb|AAB90804.1| (AE001075) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 366
Score = 68.7 bits (165), Expect = 6e-11
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 32 IEILPEFLDAIEGLQDGDWIKLILWFHKSDKPELRKILKVHPYGNPKNPLRGVFATRSPY 91
IEI PEF D ++ ++ + ++ W ++++ L L V P+ + ++ GVFATRSP+
Sbjct: 35 IEIFPEFEDGLKDIETCTHLIVLYWLDRANRDAL---LVVPPHDSREH---GVFATRSPH 88
Query: 92 RPNPLALYTVKIREISDNRIYIDWIDADDGTPVVDIKIFVERYD 135
RPNP+ V++ E + + +DA DGTPVVDIK + D
Sbjct: 89 RPNPIGFAVVELLERDGRVLKVKGLDALDGTPVVDIKPYSSTID 132
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.142 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90860911
Number of Sequences: 2977
Number of extensions: 4143532
Number of successful extensions: 9576
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 9562
Number of HSP's gapped (non-prelim): 12
length of query: 226
length of database: 189,106,746
effective HSP length: 52
effective length of query: 174
effective length of database: 157,985,422
effective search space: 27489463428
effective search space used: 27489463428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)