BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1746 (PAB1746) DE:Hypothetical protein
         (248 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75140 hypothetical protein PAB1746 - Pyrococcus abyssi (st...   494  e-139
pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii ...    90  2e-17
pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (st...    80  3e-14
pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (st...    75  7e-13
pir||B71227 hypothetical protein PH0076 - Pyrococcus horikoshii ...    74  2e-12
pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii ...    72  6e-12
pir||C71033 hypothetical protein PH1555 - Pyrococcus horikoshii ...    69  4e-11
pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (st...    69  5e-11

>pir||C75140 hypothetical protein PAB1746 - Pyrococcus abyssi (strain Orsay)
           >gi|5458347|emb|CAB49836.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 248
           
 Score =  494 bits (1257), Expect = e-139
 Identities = 248/248 (100%), Positives = 248/248 (100%)

Query: 1   MDMISYESVKLLTEFVSFVAFTIIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLV 60
           MDMISYESVKLLTEFVSFVAFTIIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLV
Sbjct: 1   MDMISYESVKLLTEFVSFVAFTIIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLV 60

Query: 61  NVLNDIIPYKTLKIVDDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYY 120
           NVLNDIIPYKTLKIVDDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYY
Sbjct: 61  NVLNDIIPYKTLKIVDDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYY 120

Query: 121 TTNLNGQEIQKLLSGKKALAITRSPKIWKELGIPYIWVSNVEGEKSIEPTKLAPLMHYIL 180
           TTNLNGQEIQKLLSGKKALAITRSPKIWKELGIPYIWVSNVEGEKSIEPTKLAPLMHYIL
Sbjct: 121 TTNLNGQEIQKLLSGKKALAITRSPKIWKELGIPYIWVSNVEGEKSIEPTKLAPLMHYIL 180

Query: 181 SNLDENTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGT 240
           SNLDENTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGT
Sbjct: 181 SNLDENTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGT 240

Query: 241 IQREFQEL 248
           IQREFQEL
Sbjct: 241 IQREFQEL 248


>pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii
           >gi|3258432|dbj|BAA31115.1| (AP000007) 239aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 239
           
 Score = 90.1 bits (220), Expect = 2e-17
 Identities = 49/141 (34%), Positives = 78/141 (54%), Gaps = 3/141 (2%)

Query: 110 PGEPIPSGAYYTTNLNGQEIQKLLSGKKALAITRSPKIWKELGIPYIWVSNVEGEKSIEP 169
           P EPI  G       + +E+  L+  K+ L ITR+P  ++ L    IWV++  GEK + P
Sbjct: 99  PEEPIFKGEGAYLARSYEEVLSLIKNKRVLVITRNPTKYRNLASRVIWVTS-SGEKGVHP 157

Query: 170 TKLAPLMHYILSNLDENT--FVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILL 227
           T L  ++   +  + EN    V++D +++L LYNG     KFL  LKDNVL + G +I++
Sbjct: 158 TSLHVILDLCIRFIKENRGGIVLIDCVEFLTLYNGFPSVFKFLTGLKDNVLMRGGKIIIM 217

Query: 228 ANPGSLPQTVWGTIQREFQEL 248
            NP ++ +     ++REF  L
Sbjct: 218 VNPNAIDKRDLSLLEREFTPL 238


>pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (strain Orsay)
           >gi|5459191|emb|CAB50677.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 242
           
 Score = 80.0 bits (194), Expect = 3e-14
 Identities = 43/124 (34%), Positives = 70/124 (55%), Gaps = 3/124 (2%)

Query: 127 QEIQKLLSGKKALAITRSPKIWKELGIPYIWVSNVEGEKSIEPTKLAPLMHYILSNLDEN 186
           +E+  L+ G+  LAITR P  +       IWV++  GE  + PT L  L+   +   +EN
Sbjct: 116 EEVLPLMKGRNVLAITRDPDRFLNKASRIIWVTS-SGENGVPPTSLHVLLDLSIRFANEN 174

Query: 187 T--FVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTIQRE 244
               +ILD L++L+LYNG     KFL +LKDN+  + G L+++  P +L +     ++RE
Sbjct: 175 RGGVIILDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKRE 234

Query: 245 FQEL 248
           F+ +
Sbjct: 235 FRPI 238


>pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (strain Orsay)
           >gi|5458037|emb|CAB49527.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 366
           
 Score = 75.3 bits (182), Expect = 7e-13
 Identities = 67/243 (27%), Positives = 113/243 (45%), Gaps = 23/243 (9%)

Query: 16  VSFVAFTIIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLVNVLNDIIPYKTLKIV 75
           V F+  ++I+L I  +++ +E+          L+ +  I   Y + V + + PY      
Sbjct: 126 VLFMGISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLLVYSKLAPY------ 179

Query: 76  DDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYYTTNLNGQE--IQKL- 132
              L   G     L    L +    +V+P  I      +  GA+YT N +  E  I K+ 
Sbjct: 180 ---LYGAGAVFRVLMIIGLFKYTIFEVKPPKIQEI--ILKPGAFYTDNESEFESVIMKMQ 234

Query: 133 LSGKKALAITRSPKIWKELGIPYIWVSNV------EGEKSIEPTKLAPLMHYILSNLDE- 185
           LSG   L   + PK+      P  W++ V      E   +I+P+ +  L+  +  +L++ 
Sbjct: 235 LSGNGVLITRKLPKMSPTF--PVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKG 292

Query: 186 NTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTIQREF 245
           ++ V +D+ +YL++ NG +  +KFL SLKD+VL  N  LIL  NP +     W  I RE 
Sbjct: 293 HSVVAMDAFEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIAREL 352

Query: 246 QEL 248
           + L
Sbjct: 353 ERL 355


>pir||B71227 hypothetical protein PH0076 - Pyrococcus horikoshii
           >gi|3256462|dbj|BAA29145.1| (AP000001) 282aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 282
           
 Score = 73.7 bits (178), Expect = 2e-12
 Identities = 65/256 (25%), Positives = 125/256 (48%), Gaps = 26/256 (10%)

Query: 14  EFVSFVAFTIIILLILFVRKY-----------LENLFGKRAVRYSLVGIAVIWFGYLVNV 62
           + + F+  T   ++I+ +RK            + ++FG   + + L+ +A +  G L+N 
Sbjct: 12  DLLVFIITTSATIIIIALRKNAREAMKYKPFSMASIFG--LLSFLLISLAEL-IGMLINT 68

Query: 63  LNDIIPYKTLKIVDDVLESIGIAIL--ALTTFYLARGFSLKVRPKAINHPGEPIPSGAYY 120
              I  Y+T +    ++ ++    L  ++ +FY+  G    V  K ++        GAYY
Sbjct: 69  AVLINQYETWQFFRSIIFTMAAFFLLASVLSFYVPFGKKRYVIFKVVSEAKLSKLWGAYY 128

Query: 121 TTNLNGQEIQKLLSGKK--ALAITRSP-KIWKE-LGI---PYIWVSNVEGEKSIEPTKLA 173
               +   + K L   +   +AI R P +I++E LG+   P IW+S ++ E ++ PT+L 
Sbjct: 129 CDRNSCYAVFKALLNARLPGIAIARDPPEIFREKLGLHLTPVIWISKIKHEDAVSPTRLE 188

Query: 174 PLMHYI---LSNLDENTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANP 230
            L+  +   L ++D +  +++D LDYL+L NGEK   KF+  LKD  +   G  ++  + 
Sbjct: 189 FLIQRLADFLKSVDIDKVILIDCLDYLILENGEKAVSKFITKLKDLSILHRGITLVTLDE 248

Query: 231 GSLPQTVWGTIQREFQ 246
             LP  +   ++ E +
Sbjct: 249 EVLPDNMIHFLKSELE 264


>pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii
           >gi|3258168|dbj|BAA30851.1| (AP000007) 237aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 237
           
 Score = 72.2 bits (174), Expect = 6e-12
 Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 20/229 (8%)

Query: 37  NLFGKRAVRYSLVGIAVIWFGYLVNVLNDIIPYKTLKIVDDVLESIGI--AILALTTF-- 92
           N +  +A + +++ +  +  G ++ +L    P   +  +  ++ S+ +  A +AL+ +  
Sbjct: 12  NKYSDKAKKSAILVLLFLSLGAILKILEIADPSVKMDYIIQLVYSLTVFGAFVALSFYIK 71

Query: 93  YLARGFSLKVR-----PKAINHPGEPIPSGAYYTTNLNGQEIQKLLSGKKA----LAITR 143
           +L    SL V      PK  N   EP   GAY  +    + +  +   ++     L  TR
Sbjct: 72  FLETPPSLTVHHSTKLPK--NGGSEPKLVGAYLVSGSRSRIVDLINMIRELNAPILVFTR 129

Query: 144 SPKIWKELG--IPYIWVSNVEGEKSIEPTKLAPLMHYILSNLDENTF--VILDSLDYLLL 199
            P  +++LG  I  IW++    E  I PTKL  +  Y +    EN +  VI+D ++YLLL
Sbjct: 130 YPTFYQDLGENIKVIWITQAS-EDGIPPTKLHVIQDYAIKFAKENKYAVVIIDCVEYLLL 188

Query: 200 YNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTIQREFQEL 248
           YN      KFL SLKD ++  N  L+L  +  +L +  +  +  EF+ L
Sbjct: 189 YNEFASVFKFLASLKDYLIMMNSALVLAVDEKALDEKYYTLLLNEFEPL 237


>pir||C71033 hypothetical protein PH1555 - Pyrococcus horikoshii
           >gi|3257984|dbj|BAA30667.1| (AP000006) 366aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 366
           
 Score = 69.5 bits (167), Expect = 4e-11
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 19/247 (7%)

Query: 11  LLTEFVSFVAFTIIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLVNVLNDIIPYK 70
           L+T  V F+ F++I+   + +R  +            ++ + +I   Y V V   I PY 
Sbjct: 124 LITYPVLFLGFSLILAGYVLLRHEISIKNVSALFPLGMILLGLIDITYPVTVNMSIAPY- 182

Query: 71  TLKIVDDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYYTTNLNGQEIQ 130
            L     V    G+ ++ +  + L    S +V  + IN     +P G Y        +I 
Sbjct: 183 -LYFAGGVFR--GMILVGIFKYALFEVSSPRVIGEGINI----LPGGYYLEDREVFHDIL 235

Query: 131 KLLS--GKKALAITRSPKIWKELGIPYIWVSNV------EGEKSIEPTKLAPLMHYILSN 182
           K +   G   L     PK       P  W++ V      +   +I PT L  L+  +  +
Sbjct: 236 KRMESLGNGVLITRHLPK--DSFSFPIFWLTKVVSGPIKDNIIAISPTDLGILLDLVRRH 293

Query: 183 LDE-NTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTI 241
           L+  +T V++D  +Y+++ NG +  MKFLLSLKD  +     LIL+ +  +  Q  W  I
Sbjct: 294 LERGHTVVVIDGFEYIVIENGFETAMKFLLSLKDTAIKYRARLILVTSSQAYSQNQWKII 353

Query: 242 QREFQEL 248
            REF+ L
Sbjct: 354 AREFENL 360


>pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (strain Orsay)
           >gi|5457735|emb|CAB49225.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 242
           
 Score = 69.1 bits (166), Expect = 5e-11
 Identities = 61/247 (24%), Positives = 115/247 (45%), Gaps = 17/247 (6%)

Query: 12  LTEFVSFVAFT-IIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLVNVLNDIIPYK 70
           ++E + F+     ++ L++ +RK+  ++      R++L+ I ++     +  +  +  + 
Sbjct: 3   ISEAIVFLGLLYFLVSLLVRIRKFSGSI-----KRFALIIIVLLGIDVFLKGVEMLYNHS 57

Query: 71  TLKIVDDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYYTTNLNGQEIQ 130
            + IV  +       IL+L   +L     +KV+   ++  GE       Y    +   I 
Sbjct: 58  LVSIVSSLALFGVFVILSLGLKHLEAP-PMKVQQVKVSMNGENSGFVGAYIIPGSRSRIV 116

Query: 131 KLLSGKK-----ALAITRSPKIWKELG--IPYIWVSNVEGEKSIEPTKLAPLMHYIL--S 181
            L++  K      L  TR P  ++ LG  I  +W++    E  I PTKL  +  Y +  +
Sbjct: 117 DLINMIKELNAPVLVFTRYPSFYRNLGENIRVVWITQAS-EDGIPPTKLHVIQDYAIRFA 175

Query: 182 NLDENTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTI 241
             ++N  +I+D L+YLLLYN      KFL +LKD+++  N  LIL  +  +L    +  +
Sbjct: 176 RENKNAVIIIDCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNML 235

Query: 242 QREFQEL 248
             EF+ L
Sbjct: 236 LNEFEPL 242


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.142    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92804420
Number of Sequences: 2977
Number of extensions: 3926495
Number of successful extensions: 9575
Number of sequences better than 1.0e-10: 8
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9570
Number of HSP's gapped (non-prelim): 8
length of query: 248
length of database: 189,106,746
effective HSP length: 53
effective length of query: 195
effective length of database: 157,386,935
effective search space: 30690452325
effective search space used: 30690452325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)