BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1746 (PAB1746) DE:Hypothetical protein
(248 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75140 hypothetical protein PAB1746 - Pyrococcus abyssi (st... 494 e-139
pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii ... 90 2e-17
pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (st... 80 3e-14
pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (st... 75 7e-13
pir||B71227 hypothetical protein PH0076 - Pyrococcus horikoshii ... 74 2e-12
pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii ... 72 6e-12
pir||C71033 hypothetical protein PH1555 - Pyrococcus horikoshii ... 69 4e-11
pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (st... 69 5e-11
>pir||C75140 hypothetical protein PAB1746 - Pyrococcus abyssi (strain Orsay)
>gi|5458347|emb|CAB49836.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 248
Score = 494 bits (1257), Expect = e-139
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MDMISYESVKLLTEFVSFVAFTIIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLV 60
MDMISYESVKLLTEFVSFVAFTIIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLV
Sbjct: 1 MDMISYESVKLLTEFVSFVAFTIIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLV 60
Query: 61 NVLNDIIPYKTLKIVDDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYY 120
NVLNDIIPYKTLKIVDDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYY
Sbjct: 61 NVLNDIIPYKTLKIVDDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYY 120
Query: 121 TTNLNGQEIQKLLSGKKALAITRSPKIWKELGIPYIWVSNVEGEKSIEPTKLAPLMHYIL 180
TTNLNGQEIQKLLSGKKALAITRSPKIWKELGIPYIWVSNVEGEKSIEPTKLAPLMHYIL
Sbjct: 121 TTNLNGQEIQKLLSGKKALAITRSPKIWKELGIPYIWVSNVEGEKSIEPTKLAPLMHYIL 180
Query: 181 SNLDENTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGT 240
SNLDENTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGT
Sbjct: 181 SNLDENTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGT 240
Query: 241 IQREFQEL 248
IQREFQEL
Sbjct: 241 IQREFQEL 248
>pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii
>gi|3258432|dbj|BAA31115.1| (AP000007) 239aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 239
Score = 90.1 bits (220), Expect = 2e-17
Identities = 49/141 (34%), Positives = 78/141 (54%), Gaps = 3/141 (2%)
Query: 110 PGEPIPSGAYYTTNLNGQEIQKLLSGKKALAITRSPKIWKELGIPYIWVSNVEGEKSIEP 169
P EPI G + +E+ L+ K+ L ITR+P ++ L IWV++ GEK + P
Sbjct: 99 PEEPIFKGEGAYLARSYEEVLSLIKNKRVLVITRNPTKYRNLASRVIWVTS-SGEKGVHP 157
Query: 170 TKLAPLMHYILSNLDENT--FVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILL 227
T L ++ + + EN V++D +++L LYNG KFL LKDNVL + G +I++
Sbjct: 158 TSLHVILDLCIRFIKENRGGIVLIDCVEFLTLYNGFPSVFKFLTGLKDNVLMRGGKIIIM 217
Query: 228 ANPGSLPQTVWGTIQREFQEL 248
NP ++ + ++REF L
Sbjct: 218 VNPNAIDKRDLSLLEREFTPL 238
>pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (strain Orsay)
>gi|5459191|emb|CAB50677.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 80.0 bits (194), Expect = 3e-14
Identities = 43/124 (34%), Positives = 70/124 (55%), Gaps = 3/124 (2%)
Query: 127 QEIQKLLSGKKALAITRSPKIWKELGIPYIWVSNVEGEKSIEPTKLAPLMHYILSNLDEN 186
+E+ L+ G+ LAITR P + IWV++ GE + PT L L+ + +EN
Sbjct: 116 EEVLPLMKGRNVLAITRDPDRFLNKASRIIWVTS-SGENGVPPTSLHVLLDLSIRFANEN 174
Query: 187 T--FVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTIQRE 244
+ILD L++L+LYNG KFL +LKDN+ + G L+++ P +L + ++RE
Sbjct: 175 RGGVIILDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKRE 234
Query: 245 FQEL 248
F+ +
Sbjct: 235 FRPI 238
>pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (strain Orsay)
>gi|5458037|emb|CAB49527.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 366
Score = 75.3 bits (182), Expect = 7e-13
Identities = 67/243 (27%), Positives = 113/243 (45%), Gaps = 23/243 (9%)
Query: 16 VSFVAFTIIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLVNVLNDIIPYKTLKIV 75
V F+ ++I+L I +++ +E+ L+ + I Y + V + + PY
Sbjct: 126 VLFMGISMILLGISLLKREIESRGIAALFPIGLILLGSINLTYPLLVYSKLAPY------ 179
Query: 76 DDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYYTTNLNGQE--IQKL- 132
L G L L + +V+P I + GA+YT N + E I K+
Sbjct: 180 ---LYGAGAVFRVLMIIGLFKYTIFEVKPPKIQEI--ILKPGAFYTDNESEFESVIMKMQ 234
Query: 133 LSGKKALAITRSPKIWKELGIPYIWVSNV------EGEKSIEPTKLAPLMHYILSNLDE- 185
LSG L + PK+ P W++ V E +I+P+ + L+ + +L++
Sbjct: 235 LSGNGVLITRKLPKMSPTF--PVFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKG 292
Query: 186 NTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTIQREF 245
++ V +D+ +YL++ NG + +KFL SLKD+VL N LIL NP + W I RE
Sbjct: 293 HSVVAMDAFEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIAREL 352
Query: 246 QEL 248
+ L
Sbjct: 353 ERL 355
>pir||B71227 hypothetical protein PH0076 - Pyrococcus horikoshii
>gi|3256462|dbj|BAA29145.1| (AP000001) 282aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 282
Score = 73.7 bits (178), Expect = 2e-12
Identities = 65/256 (25%), Positives = 125/256 (48%), Gaps = 26/256 (10%)
Query: 14 EFVSFVAFTIIILLILFVRKY-----------LENLFGKRAVRYSLVGIAVIWFGYLVNV 62
+ + F+ T ++I+ +RK + ++FG + + L+ +A + G L+N
Sbjct: 12 DLLVFIITTSATIIIIALRKNAREAMKYKPFSMASIFG--LLSFLLISLAEL-IGMLINT 68
Query: 63 LNDIIPYKTLKIVDDVLESIGIAIL--ALTTFYLARGFSLKVRPKAINHPGEPIPSGAYY 120
I Y+T + ++ ++ L ++ +FY+ G V K ++ GAYY
Sbjct: 69 AVLINQYETWQFFRSIIFTMAAFFLLASVLSFYVPFGKKRYVIFKVVSEAKLSKLWGAYY 128
Query: 121 TTNLNGQEIQKLLSGKK--ALAITRSP-KIWKE-LGI---PYIWVSNVEGEKSIEPTKLA 173
+ + K L + +AI R P +I++E LG+ P IW+S ++ E ++ PT+L
Sbjct: 129 CDRNSCYAVFKALLNARLPGIAIARDPPEIFREKLGLHLTPVIWISKIKHEDAVSPTRLE 188
Query: 174 PLMHYI---LSNLDENTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANP 230
L+ + L ++D + +++D LDYL+L NGEK KF+ LKD + G ++ +
Sbjct: 189 FLIQRLADFLKSVDIDKVILIDCLDYLILENGEKAVSKFITKLKDLSILHRGITLVTLDE 248
Query: 231 GSLPQTVWGTIQREFQ 246
LP + ++ E +
Sbjct: 249 EVLPDNMIHFLKSELE 264
>pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii
>gi|3258168|dbj|BAA30851.1| (AP000007) 237aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 237
Score = 72.2 bits (174), Expect = 6e-12
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 20/229 (8%)
Query: 37 NLFGKRAVRYSLVGIAVIWFGYLVNVLNDIIPYKTLKIVDDVLESIGI--AILALTTF-- 92
N + +A + +++ + + G ++ +L P + + ++ S+ + A +AL+ +
Sbjct: 12 NKYSDKAKKSAILVLLFLSLGAILKILEIADPSVKMDYIIQLVYSLTVFGAFVALSFYIK 71
Query: 93 YLARGFSLKVR-----PKAINHPGEPIPSGAYYTTNLNGQEIQKLLSGKKA----LAITR 143
+L SL V PK N EP GAY + + + + ++ L TR
Sbjct: 72 FLETPPSLTVHHSTKLPK--NGGSEPKLVGAYLVSGSRSRIVDLINMIRELNAPILVFTR 129
Query: 144 SPKIWKELG--IPYIWVSNVEGEKSIEPTKLAPLMHYILSNLDENTF--VILDSLDYLLL 199
P +++LG I IW++ E I PTKL + Y + EN + VI+D ++YLLL
Sbjct: 130 YPTFYQDLGENIKVIWITQAS-EDGIPPTKLHVIQDYAIKFAKENKYAVVIIDCVEYLLL 188
Query: 200 YNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTIQREFQEL 248
YN KFL SLKD ++ N L+L + +L + + + EF+ L
Sbjct: 189 YNEFASVFKFLASLKDYLIMMNSALVLAVDEKALDEKYYTLLLNEFEPL 237
>pir||C71033 hypothetical protein PH1555 - Pyrococcus horikoshii
>gi|3257984|dbj|BAA30667.1| (AP000006) 366aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 366
Score = 69.5 bits (167), Expect = 4e-11
Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 19/247 (7%)
Query: 11 LLTEFVSFVAFTIIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLVNVLNDIIPYK 70
L+T V F+ F++I+ + +R + ++ + +I Y V V I PY
Sbjct: 124 LITYPVLFLGFSLILAGYVLLRHEISIKNVSALFPLGMILLGLIDITYPVTVNMSIAPY- 182
Query: 71 TLKIVDDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYYTTNLNGQEIQ 130
L V G+ ++ + + L S +V + IN +P G Y +I
Sbjct: 183 -LYFAGGVFR--GMILVGIFKYALFEVSSPRVIGEGINI----LPGGYYLEDREVFHDIL 235
Query: 131 KLLS--GKKALAITRSPKIWKELGIPYIWVSNV------EGEKSIEPTKLAPLMHYILSN 182
K + G L PK P W++ V + +I PT L L+ + +
Sbjct: 236 KRMESLGNGVLITRHLPK--DSFSFPIFWLTKVVSGPIKDNIIAISPTDLGILLDLVRRH 293
Query: 183 LDE-NTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTI 241
L+ +T V++D +Y+++ NG + MKFLLSLKD + LIL+ + + Q W I
Sbjct: 294 LERGHTVVVIDGFEYIVIENGFETAMKFLLSLKDTAIKYRARLILVTSSQAYSQNQWKII 353
Query: 242 QREFQEL 248
REF+ L
Sbjct: 354 AREFENL 360
>pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (strain Orsay)
>gi|5457735|emb|CAB49225.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 69.1 bits (166), Expect = 5e-11
Identities = 61/247 (24%), Positives = 115/247 (45%), Gaps = 17/247 (6%)
Query: 12 LTEFVSFVAFT-IIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLVNVLNDIIPYK 70
++E + F+ ++ L++ +RK+ ++ R++L+ I ++ + + + +
Sbjct: 3 ISEAIVFLGLLYFLVSLLVRIRKFSGSI-----KRFALIIIVLLGIDVFLKGVEMLYNHS 57
Query: 71 TLKIVDDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYYTTNLNGQEIQ 130
+ IV + IL+L +L +KV+ ++ GE Y + I
Sbjct: 58 LVSIVSSLALFGVFVILSLGLKHLEAP-PMKVQQVKVSMNGENSGFVGAYIIPGSRSRIV 116
Query: 131 KLLSGKK-----ALAITRSPKIWKELG--IPYIWVSNVEGEKSIEPTKLAPLMHYIL--S 181
L++ K L TR P ++ LG I +W++ E I PTKL + Y + +
Sbjct: 117 DLINMIKELNAPVLVFTRYPSFYRNLGENIRVVWITQAS-EDGIPPTKLHVIQDYAIRFA 175
Query: 182 NLDENTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTI 241
++N +I+D L+YLLLYN KFL +LKD+++ N LIL + +L + +
Sbjct: 176 RENKNAVIIIDCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNML 235
Query: 242 QREFQEL 248
EF+ L
Sbjct: 236 LNEFEPL 242
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92804420
Number of Sequences: 2977
Number of extensions: 3926495
Number of successful extensions: 9575
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9570
Number of HSP's gapped (non-prelim): 8
length of query: 248
length of database: 189,106,746
effective HSP length: 53
effective length of query: 195
effective length of database: 157,386,935
effective search space: 30690452325
effective search space used: 30690452325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)