BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1748 (PAB1748) DE:Hypothetical protein
         (258 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75140 hypothetical protein PAB1748 - Pyrococcus abyssi (st...   516  e-145

>pir||A75140 hypothetical protein PAB1748 - Pyrococcus abyssi (strain Orsay)
           >gi|5458345|emb|CAB49834.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 258
           
 Score =  516 bits (1315), Expect = e-145
 Identities = 258/258 (100%), Positives = 258/258 (100%)

Query: 1   MVSVKGKIIFEIFVFPVVLFSMVFGFVWVKLDVITREWALITAFLFVLVMGSMVFFLARI 60
           MVSVKGKIIFEIFVFPVVLFSMVFGFVWVKLDVITREWALITAFLFVLVMGSMVFFLARI
Sbjct: 1   MVSVKGKIIFEIFVFPVVLFSMVFGFVWVKLDVITREWALITAFLFVLVMGSMVFFLARI 60

Query: 61  LEKHGYRKSDIKRIGEILEEHWDEPWDSGYLKHDVQECIAHHLIIWGLLSTSLLWFHDVF 120
           LEKHGYRKSDIKRIGEILEEHWDEPWDSGYLKHDVQECIAHHLIIWGLLSTSLLWFHDVF
Sbjct: 61  LEKHGYRKSDIKRIGEILEEHWDEPWDSGYLKHDVQECIAHHLIIWGLLSTSLLWFHDVF 120

Query: 121 FAIMAFVGLAFLMVVMYPIFVTMVVWILALPLYFLKSRRAEDAFEFIAETSLVSTLAIPV 180
           FAIMAFVGLAFLMVVMYPIFVTMVVWILALPLYFLKSRRAEDAFEFIAETSLVSTLAIPV
Sbjct: 121 FAIMAFVGLAFLMVVMYPIFVTMVVWILALPLYFLKSRRAEDAFEFIAETSLVSTLAIPV 180

Query: 181 IWVVSSYISTKNYPEDVLRMFNAVVRNAEGFLILSILNALFGFLGIYLSRRVGGRILAII 240
           IWVVSSYISTKNYPEDVLRMFNAVVRNAEGFLILSILNALFGFLGIYLSRRVGGRILAII
Sbjct: 181 IWVVSSYISTKNYPEDVLRMFNAVVRNAEGFLILSILNALFGFLGIYLSRRVGGRILAII 240

Query: 241 MLSIAVAMLFTVWSILRI 258
           MLSIAVAMLFTVWSILRI
Sbjct: 241 MLSIAVAMLFTVWSILRI 258


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.335    0.147    0.460 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87193389
Number of Sequences: 2977
Number of extensions: 3296991
Number of successful extensions: 17493
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17492
Number of HSP's gapped (non-prelim): 1
length of query: 258
length of database: 189,106,746
effective HSP length: 48
effective length of query: 210
effective length of database: 160,379,370
effective search space: 33679667700
effective search space used: 33679667700
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.6 bits)
S2: 164 (68.3 bits)