BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1750 (PAB1750) DE:Hypothetical protein
(175 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75139 hypothetical protein PAB1750 - Pyrococcus abyssi (st... 353 1e-96
pir||D71171 hypothetical protein PH0568 - Pyrococcus horikoshii ... 249 1e-65
pir||F75082 hypothetical protein PAB1671 - Pyrococcus abyssi (st... 75 5e-13
pir||C75072 hypothetical protein PAB1727 - Pyrococcus abyssi (st... 71 1e-11
pir||B75141 hypothetical protein PAB0624 - Pyrococcus abyssi (st... 68 9e-11
>pir||G75139 hypothetical protein PAB1750 - Pyrococcus abyssi (strain Orsay)
>gi|5458343|emb|CAB49832.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 175
Score = 353 bits (895), Expect = 1e-96
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MAIMEVRKMEVSLDKIKELPLEELLGMAIKSEIEARKFYESFAEKIDIEPLKGKILWLAS 60
MAIMEVRKMEVSLDKIKELPLEELLGMAIKSEIEARKFYESFAEKIDIEPLKGKILWLAS
Sbjct: 1 MAIMEVRKMEVSLDKIKELPLEELLGMAIKSEIEARKFYESFAEKIDIEPLKGKILWLAS 60
Query: 61 EEEKHEKMLRKLYSSMFPGKEVVFPKEHIGPELQPVAKELKGSQDVIDLIHWAMKAEEIA 120
EEEKHEKMLRKLYSSMFPGKEVVFPKEHIGPELQPVAKELKGSQDVIDLIHWAMKAEEIA
Sbjct: 61 EEEKHEKMLRKLYSSMFPGKEVVFPKEHIGPELQPVAKELKGSQDVIDLIHWAMKAEEIA 120
Query: 121 AQFYEKLMDIVEGEEKKRLMKSLSDMERGHYYMLRAEYELLLDWEMYSQMMHIGP 175
AQFYEKLMDIVEGEEKKRLMKSLSDMERGHYYMLRAEYELLLDWEMYSQMMHIGP
Sbjct: 121 AQFYEKLMDIVEGEEKKRLMKSLSDMERGHYYMLRAEYELLLDWEMYSQMMHIGP 175
>pir||D71171 hypothetical protein PH0568 - Pyrococcus horikoshii
>gi|3256974|dbj|BAA29657.1| (AP000002) 171aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 171
Score = 249 bits (630), Expect = 1e-65
Identities = 120/163 (73%), Positives = 142/163 (86%)
Query: 13 LDKIKELPLEELLGMAIKSEIEARKFYESFAEKIDIEPLKGKILWLASEEEKHEKMLRKL 72
L K+ E LEELLGMAIKSEI A+KFYES A+ +D +PLK KI WLA EE++HE +LRKL
Sbjct: 9 LYKMAEFSLEELLGMAIKSEIGAQKFYESLAKHVDSKPLKEKIEWLAGEEKRHEILLRKL 68
Query: 73 YSSMFPGKEVVFPKEHIGPELQPVAKELKGSQDVIDLIHWAMKAEEIAAQFYEKLMDIVE 132
YS MFPGKE+VFPKEHIGPELQPVA+ELKG Q++IDLI AM+AEEIA++FY KL ++VE
Sbjct: 69 YSEMFPGKEIVFPKEHIGPELQPVAEELKGIQNIIDLIRLAMRAEEIASEFYSKLEEMVE 128
Query: 133 GEEKKRLMKSLSDMERGHYYMLRAEYELLLDWEMYSQMMHIGP 175
++KK+LM+ LSDME+GHYY LRAEYELLLDWEMYSQMMHIGP
Sbjct: 129 DDKKKKLMRYLSDMEKGHYYTLRAEYELLLDWEMYSQMMHIGP 171
>pir||F75082 hypothetical protein PAB1671 - Pyrococcus abyssi (strain Orsay)
>gi|5458475|emb|CAB49963.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 320
Score = 74.9 bits (181), Expect = 5e-13
Identities = 47/165 (28%), Positives = 86/165 (51%), Gaps = 6/165 (3%)
Query: 4 MEVRK-MEVSLDKIKELPLEELLGMAIKSEIEARKFYESFAEKIDIEPLKGKILWLASEE 62
+E R+ ME + K+K+L +E+L AI +E ++Y A++ + E ++ L +A E
Sbjct: 6 LEAREYMEKIVKKLKDLSPKEILSYAIFNEEAEIRYYRELAKRSERESVRVLFLQMADES 65
Query: 63 EKHEKMLRKLYSSMFPGKEVVFPKEHIGP--ELQPVAKELKGSQDVIDLIHWAMKAEEIA 120
++H L KL+ ++P +E P E P E+ P + + D ++ + + M++E A
Sbjct: 66 QEHHDRLYKLFKELYPNEE---PVEVDAPPVEVAPFYPKFETVDDYLEALEYCMESELFA 122
Query: 121 AQFYEKLMDIVEGEEKKRLMKSLSDMERGHYYMLRAEYELLLDWE 165
+ YE L E+ + L L++ME HY L+ Y LL ++
Sbjct: 123 KETYEVLALKATNEDARVLFAQLAEMENDHYLRLKKLYNLLTSFK 167
>pir||C75072 hypothetical protein PAB1727 - Pyrococcus abyssi (strain Orsay)
>gi|5458392|emb|CAB49880.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 193
Score = 70.6 bits (170), Expect = 1e-11
Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Query: 13 LDKIKELP---LEELLGMAIKSEIEARKFYESFAEKIDIEPLKGKILWLASEEEKHEKML 69
++ IKEL L+E+L A+ E+++ K YE E + + K E H++ +
Sbjct: 19 VNAIKELSSKSLKEILSYALSGELDSTKVYEFLYENLPDGYPREKFKEFIEMERDHDRKV 78
Query: 70 RKLYSSMFPGKEVVFPK-EHIGPELQPVAKELKGSQDVIDLIHWAMKAEEIAAQFYEKLM 128
K++ ++FPG+E V K + + L+ +D + AM E+++ Y L
Sbjct: 79 EKIFRALFPGEEPVEVKLKTWSKAVLEKDFRLRTVKDYLKAPEIAMDLEKLSEGVYTMLY 138
Query: 129 DIVEGEEKKRLMKSLSDMERGHYYMLRAEYE 159
DI+ E KR+MK L++ ER HY LR EY+
Sbjct: 139 DILRNPEHKRIMKKLAEDERYHYNFLRKEYD 169
>pir||B75141 hypothetical protein PAB0624 - Pyrococcus abyssi (strain Orsay)
>gi|5458354|emb|CAB49843.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 158
Score = 67.5 bits (162), Expect = 9e-11
Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 23 ELLGMAIKSEIEARKFYESFAEKIDIEPLKGKILWLASEEEKHEKMLR-KLYSSMFPGKE 81
+ L +A++ E KFY A+ E + L+LA+EE +H K+ KL ++ E
Sbjct: 5 DALALALEVEKAELKFYLEMAKIAREEKARKMFLFLANEELEHWKIFEEKLIEALLRHCE 64
Query: 82 VVFPKEHIGPE-LQPVAKELKGSQDVIDLIHWAMKAEEIAAQFYEKLMDIVEGEEKKRLM 140
K +I E L+ + +++G I + M E+ +FYEKL + VE EE K+ +
Sbjct: 65 ----KPNIDEEALEKLTPKMEGEVSEIKAVEVGMMQEKKTWEFYEKLAEEVEDEEVKKTL 120
Query: 141 KSLSDMERGHYYMLRAEYE 159
K L+ +E GHY +L+A+Y+
Sbjct: 121 KELAKVEEGHYELLKAQYD 139
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.135 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62508655
Number of Sequences: 2977
Number of extensions: 2519042
Number of successful extensions: 7827
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7815
Number of HSP's gapped (non-prelim): 9
length of query: 175
length of database: 189,106,746
effective HSP length: 56
effective length of query: 119
effective length of database: 155,591,474
effective search space: 18515385406
effective search space used: 18515385406
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)