BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1751 (PAB1751) DE:Hypothetical protein
(451 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75139 hypothetical protein PAB1751 - Pyrococcus abyssi (st... 904 0.0
pir||D71101 hypothetical protein PH1071 - Pyrococcus horikoshii ... 863 0.0
sp|Q58271|Y861_METJA HYPOTHETICAL PROTEIN MJ0861 >gi|2128073|pir... 460 e-128
pir||C69164 conserved hypothetical protein MTH49 - Methanobacter... 436 e-121
gb|AAG19531.1| (AE005044) Vng1149c [Halobacterium sp. NRC-1] 321 1e-86
sp|P54123|Y551_SYNY3 HYPOTHETICAL 70.4 KD PROTEIN SLR0551 >gi|74... 225 9e-58
dbj|BAB06381.1| (AP001516) unknown conserved protein [Bacillus h... 205 7e-52
sp|Q45493|YKQC_BACSU HYPOTHETICAL 61.5 KD PROTEIN IN ADEC-PDHA I... 203 3e-51
pir||T35845 hypothetical protein SC9A10.09 SC9A10.09 - Streptomy... 199 5e-50
pir||G70879 hypothetical protein Rv2752c - Mycobacterium tubercu... 191 1e-47
sp|P56185|YE30_HELPY HYPOTHETICAL PROTEIN HP1430 >gi|7463927|pir... 187 2e-46
sp|Q9ZJI6|YE30_HELPJ HYPOTHETICAL PROTEIN HP1430/JHP1323 >gi|746... 187 2e-46
dbj|BAB06117.1| (AP001515) unknown conserved protein [Bacillus h... 186 4e-46
sp|P47385|Y139_MYCGE HYPOTHETICAL PROTEIN MG139 >gi|1361567|pir|... 183 3e-45
pir||G82874 conserved hypothetical UU570 [imported] - Ureaplasma... 179 6e-44
sp|P75497|Y139_MYCPN HYPOTHETICAL PROTEIN MG139 HOMOLOG (A65_ORF... 178 1e-43
gb|AAD02119.1| (AF039028) unknown [Streptomyces toyocaensis] 176 4e-43
pir||B81269 hypothetical protein Cj1710c [imported] - Campylobac... 174 2e-42
sp|P54122|YOR4_CORGL HYPOTHETICAL 69.1 KD PROTEIN (ORF4) >gi|120... 174 2e-42
pir||H69884 conserved hypothetical protein ymfA - Bacillus subti... 171 1e-41
pir||H71702 hypothetical protein RP441 - Rickettsia prowazekii >... 162 7e-39
dbj|BAB08807.1| (AB007649) gene_id:MLE2.5~similar to unknown pro... 154 2e-36
gb|AAD25735.1|AF100324_3 (AF100324) unknown [Mycoplasma fermentans] 71 2e-11
pir||C72749 probable cleavage and polyadenylation factor subunit... 71 2e-11
>pir||D75139 hypothetical protein PAB1751 - Pyrococcus abyssi (strain Orsay)
>gi|5458340|emb|CAB49829.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 451
Score = 904 bits (2311), Expect = 0.0
Identities = 451/451 (100%), Positives = 451/451 (100%)
Query: 1 MWEEINMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDL 60
MWEEINMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDL
Sbjct: 1 MWEEINMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDL 60
Query: 61 RKLGAIPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIK 120
RKLGAIPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIK
Sbjct: 61 RKLGAIPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIK 120
Query: 121 GEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKF 180
GEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKF
Sbjct: 121 GEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKF 180
Query: 181 DNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEA 240
DNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEA
Sbjct: 181 DNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEA 240
Query: 241 DGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSP 300
DGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSP
Sbjct: 241 DGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSP 300
Query: 301 NAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPL 360
NAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPL
Sbjct: 301 NAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPL 360
Query: 361 NVAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYA 420
NVAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYA
Sbjct: 361 NVAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYA 420
Query: 421 ELAEEEGYMIGKEVFISRNGHVVEIPGSLEG 451
ELAEEEGYMIGKEVFISRNGHVVEIPGSLEG
Sbjct: 421 ELAEEEGYMIGKEVFISRNGHVVEIPGSLEG 451
>pir||D71101 hypothetical protein PH1071 - Pyrococcus horikoshii
>gi|3257487|dbj|BAA30170.1| (AP000004) 450aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 450
Score = 863 bits (2206), Expect = 0.0
Identities = 427/440 (97%), Positives = 437/440 (99%)
Query: 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGA 65
NMIKIYTLGGYEEVGKNMTAVEY GEVVI+DMGIRLDRVLIHEDVEFQKMSSKDLRKLGA
Sbjct: 10 NMIKIYTLGGYEEVGKNMTAVEYEGEVVIIDMGIRLDRVLIHEDVEFQKMSSKDLRKLGA 69
Query: 66 IPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125
IPDDRPIR+KKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF
Sbjct: 70 IPDDRPIRDKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 129
Query: 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185
EVTNPLYETNYGEIVQVSENLAIEFVQ+THSIP SSIVVIHTPEGAVVYACDYKFDNNHP
Sbjct: 130 EVTNPLYETNYGEIVQVSENLAIEFVQVTHSIPHSSIVVIHTPEGAVVYACDYKFDNNHP 189
Query: 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIA 245
YGE+PDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIA
Sbjct: 190 YGEKPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIA 249
Query: 246 TTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVSK 305
TTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVSK
Sbjct: 250 TTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVSK 309
Query: 306 VLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPLNVAQR 365
VLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPLN+AQR
Sbjct: 310 VLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPRDTVVFSAGVIPNPLNIAQR 369
Query: 366 YALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAELAEE 425
YALETKL+M+GVRMIK+LHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAELAEE
Sbjct: 370 YALETKLKMRGVRMIKDLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAELAEE 429
Query: 426 EGYMIGKEVFISRNGHVVEI 445
EGY IGK+VFISRNGH+VEI
Sbjct: 430 EGYRIGKDVFISRNGHIVEI 449
>sp|Q58271|Y861_METJA HYPOTHETICAL PROTEIN MJ0861 >gi|2128073|pir||E64407 hypothetical
protein MG423 homolog - Methanococcus jannaschii
>gi|1591546|gb|AAB98866.1| (U67530) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 448
Score = 460 bits (1172), Expect = e-128
Identities = 228/438 (52%), Positives = 313/438 (71%), Gaps = 6/438 (1%)
Query: 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67
++I +GGYEEVG+NMTAV +GE++I+DMGIRLDRVLIHED + K+ S +L + G IP
Sbjct: 3 LEIIAIGGYEEVGRNMTAVNVDGEIIILDMGIRLDRVLIHEDTDISKLHSLELIEKGIIP 62
Query: 68 DDRPIRN--KKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125
+D ++N +V AI LSHGHLDHIGAV KLA Y + PI GTPYTI L K EI E+ F
Sbjct: 63 NDTVMKNIEGEVKAIVLSHGHLDHIGAVPKLAHRY-NAPIIGTPYTIELVKREILSEKKF 121
Query: 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185
+V NPL N GE + ++ N+ +EF++ITHSIP S + V+HTP G++VY D+KFDN
Sbjct: 122 DVRNPLIVLNAGESIDLTPNITLEFIRITHSIPDSVLPVLHTPYGSIVYGNDFKFDNFPV 181
Query: 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIA 245
GERPDY+ +K++GK GV I+E+TR+ E KTP E +A LL++ L + G+I
Sbjct: 182 VGERPDYRAIKKVGKNGVLCFISETTRINHEGKTPPEIIASGLLKNDLLAADNDKHGIIV 241
Query: 246 TTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKM-KGSRVLRSPNAVS 304
TTF+SHIAR++ + +IA KMGR + +GRS+ ++ GIA+ +GL+K + R+ P+++
Sbjct: 242 TTFSSHIARIKSITDIAEKMGRTPVLLGRSMMRFCGIAQDIGLVKFPEDLRIYGDPSSIE 301
Query: 305 KVLKE-VSQARENYLLIVTGHQGEPGAILTRMA-NGELYDIGPRDTVVFSAGVIPNPLNV 362
LK V + +E YL+I TGHQGE GA+L+RMA N Y D VVFSA IPNP+N
Sbjct: 302 MALKNIVKEGKEKYLIIATGHQGEEGAVLSRMATNKTPYKFEKYDCVVFSADPIPNPMNA 361
Query: 363 AQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAEL 422
AQRY LE++L++ GVR+ K HVSGHA+KEDHR ++R LNPE+I+P+HG+F + Y +L
Sbjct: 362 AQRYMLESRLKLLGVRIFKGAHVSGHAAKEDHRDMLRWLNPEHIIPSHGDFNLTAEYTKL 421
Query: 423 AEEEGYMIGKEVFISRNG 440
AEEEGY +G++V + RNG
Sbjct: 422 AEEEGYRLGEDVHLLRNG 439
>pir||C69164 conserved hypothetical protein MTH49 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621085|gb|AAB84556.1| (AE000797) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 450
Score = 436 bits (1110), Expect = e-121
Identities = 226/448 (50%), Positives = 299/448 (66%), Gaps = 7/448 (1%)
Query: 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67
+++ +GGYEEVGKNM+AV+ +VVI DMGI LDRV IHED + +M S DL + G IP
Sbjct: 3 VEVIAIGGYEEVGKNMSAVKVGDDVVIFDMGIHLDRVHIHEDTDIARMHSLDLIERGVIP 62
Query: 68 DDRPIRNK--KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125
DD +++ KV AI +HGHLDHIGAV KLA Y PI TPYTI L + IK E F
Sbjct: 63 DDTLMKDVDGKVRAIVFTHGHLDHIGAVAKLAHRY-QAPIIATPYTIALIERTIKAERKF 121
Query: 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185
V N L N GE Q+S + +EF+Q THSIPQS I +HTPEG +VYA D+KFD++
Sbjct: 122 NVLNTLQVLNAGEKCQISPGITLEFIQSTHSIPQSVIAALHTPEGIIVYALDFKFDDHQK 181
Query: 186 YGERPDYKRLKELGKEGVKVLIAESTRVAE--ETKTPSEAVAKMLLEDFFLYEGMEADGL 243
PDY RL+ELG++GV +I E+TR E E KT SE VA+++LED E G+
Sbjct: 182 ISPPPDYHRLRELGRKGVLAMIVETTRANEKQEVKTHSEKVARIVLEDIMKNPLEEKTGM 241
Query: 244 IATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKM-KGSRVLRSPNA 302
I TTF+SH+ R+Q + +IA+K RQ + +GRS+ +Y G+A+ +G++K+ + + + SP A
Sbjct: 242 IVTTFSSHMERIQAISDIASKSDRQMLLLGRSMERYCGLAEAMGILKLPENASIYGSPKA 301
Query: 303 VSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGEL-YDIGPRDTVVFSAGVIPNPLN 361
V++ L RE+YLLI TGHQGEP A+L R+AN + + I D VV SA VIPNP+N
Sbjct: 302 VNRALARAEAKREDYLLITTGHQGEPDALLPRIANAKTQFRIQRGDNVVISAPVIPNPMN 361
Query: 362 VAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAE 421
VA R +E +L G R+ N HVSGHA +EDHR IRMLNP +I+PAHG+ ML+ YAE
Sbjct: 362 VANRNLMERRLASSGARIYTNAHVSGHAGREDHRDFIRMLNPMHIIPAHGDLSMLSAYAE 421
Query: 422 LAEEEGYMIGKEVFISRNGHVVEIPGSL 449
+AEEEGY +G ++ I RNG G +
Sbjct: 422 IAEEEGYKLGNDIHILRNGQAQVFNGGI 449
>gb|AAG19531.1| (AE005044) Vng1149c [Halobacterium sp. NRC-1]
Length = 399
Score = 321 bits (814), Expect = 1e-86
Identities = 167/398 (41%), Positives = 254/398 (62%), Gaps = 8/398 (2%)
Query: 55 MSSKDLRKLGAIPDDRPIRNKK--VVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTI 112
M S DL +GAIPDDR + + + V AI +HGHLDHIGA+ KLA Y D PI G+P+TI
Sbjct: 1 MHSLDLIDMGAIPDDRVMSDLEGDVKAIVPTHGHLDHIGAISKLAHRY-DAPIVGSPFTI 59
Query: 113 RLAKSEIKGEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAV 172
L K EI+ E+ F V N L + G +++ + +EFV +THSI + V+HTPEGAV
Sbjct: 60 ELVKGEIESEQKFGVENDLVKMEAGGTMEIGDRCELEFVHVTHSIIDAINPVLHTPEGAV 119
Query: 173 VYACDYKFDNNHPYGERPDYKRLKELGKEGVKVL--IAESTRVAEETKTPSEAVAKMLLE 230
VY D + D++ + D +R +E+G+EG VL I + T ++ +TPSE+ A+ L+
Sbjct: 120 VYGLDKRMDHDPVLEDPIDMERFREIGREGEGVLCYIEDCTNAGKKGRTPSESTARRHLK 179
Query: 231 DFFLYEGMEADGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIK 290
D G++ATTF+SHI+R+ L+E A ++GR+ I +GRS+ +Y+G A+++G +
Sbjct: 180 DVLTSVADYDGGIVATTFSSHISRVSSLVEFAKEIGREPILLGRSMERYSGTAERMGRVN 239
Query: 291 MKGSR-VLRSPNAVSKVLKEV-SQARENYLLIVTGHQGEPGAILTRMANGEL-YDIGPRD 347
+ +V + K V ++ +EN+L IVTGHQGEP A+LTRM GE YDI D
Sbjct: 240 FPDDLGMFGHRKSVDRAFKRVMNEGKENFLPIVTGHQGEPQAMLTRMGRGETPYDIEDGD 299
Query: 348 TVVFSAGVIPNPLNVAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIV 407
++FSA VIP P N QRY E LRM+G R+ ++HVSGH +E H ++ L P++++
Sbjct: 300 KIIFSASVIPEPTNKGQRYQSEQLLRMQGARIYDDIHVSGHLREEGHYQMLDALQPQHLI 359
Query: 408 PAHGEFRMLTHYAELAEEEGYMIGKEVFISRNGHVVEI 445
PAH + + + YA+LA+ +GY IG+++ ++ NG+ +++
Sbjct: 360 PAHQDMKGMAPYAKLAKSQGYKIGRDLHMTENGNTIQL 397
>sp|P54123|Y551_SYNY3 HYPOTHETICAL 70.4 KD PROTEIN SLR0551 >gi|7429543|pir||S76024
conserved hypothetical protein slr0551 - Synechocystis
sp. (strain PCC 6803) >gi|1001381|dbj|BAA10871.1|
(D64006) hypothetical protein [Synechocystis sp.]
Length = 640
Score = 225 bits (567), Expect = 9e-58
Identities = 151/451 (33%), Positives = 246/451 (54%), Gaps = 41/451 (9%)
Query: 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAI- 66
+KI LGG E+GKN EY+ E++++D G+ + D+ + +
Sbjct: 10 LKILPLGGLHEIGKNTCVFEYDDEILLLDAGLAFP--------------TDDMHGVNVVL 55
Query: 67 PDDRPIRN--KKVVAIALSHGHLDHIGAVGKLAPHYPDVPI-YGTPYTIRLAKSEIKGEE 123
PD +R +K+ + ++HGH DHIG + + D+PI YG + L + +++
Sbjct: 56 PDMTYLRENREKIKGMVVTHGHEDHIGGIAYHLKQF-DIPIIYGPRLAMALLRDKLEEAG 114
Query: 124 YFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNN 183
E TN L + E+V++ ++ +EF++ THSI S + IHTP G V+++ D+K D+
Sbjct: 115 MLERTN-LQTVSPREMVRLGKSFVVEFIRNTHSIADSYCLAIHTPLGVVMHSGDFKIDHT 173
Query: 184 HPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG- 242
GE D +++ E G++GV L+++ST TPSEA L+ F +A+G
Sbjct: 174 PIDGEFFDLQKVAEYGEKGVLCLLSDSTNAEVPGITPSEASVIPNLDRVF----SQAEGR 229
Query: 243 LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNA 302
L+ TTFAS + R+ ++ +A K R+ +GRS+ A++LG IK + L P
Sbjct: 230 LMVTTFASSVHRVNIILSLAQKHQRKVAVVGRSMLNVIAHARKLGYIKCPDN--LFVPLK 287
Query: 303 VSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPR--DTVVFSAGVIPNPL 360
++ L + Q L++ TG QGEP A +TR++NGE I R DTVVFSA IP
Sbjct: 288 AARNLPDQQQ-----LILTTGSQGEPLAAMTRISNGEHPQIKIRQGDTVVFSANPIPG-- 340
Query: 361 NVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRML 416
N +L M+G +I + +HVSGHAS+E+H+ L+ + P++ VP HGE RML
Sbjct: 341 NTIAVVNTIDRLMMQGANVIYGKHQGIHVSGHASQEEHKMLLALTRPKFFVPVHGEHRML 400
Query: 417 THYAELAEEEGYMIGKEVFISRNGHVVEIPG 447
++++A+ +G + + + I NG V+E+ G
Sbjct: 401 VKHSQMAQAQG-IPSENIVIVNNGDVIELTG 430
>dbj|BAB06381.1| (AP001516) unknown conserved protein [Bacillus halodurans]
Length = 555
Score = 205 bits (517), Expect = 7e-52
Identities = 145/452 (32%), Positives = 242/452 (53%), Gaps = 46/452 (10%)
Query: 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRL--DRVLIHEDVEFQKMSSKDLRKL 63
N +Y LGG E+GKN AV++ E++++D GI+ D +L + V
Sbjct: 7 NQTAVYALGGLGEIGKNTYAVQFQDEIILIDAGIKFPEDELLGIDYV------------- 53
Query: 64 GAIPD-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKG 121
IPD ++N+ K+ + ++HGH DHIG + L ++PIYG + L + +++
Sbjct: 54 --IPDYSYLVKNENKIKGLFITHGHEDHIGGIPYLLREV-NIPIYGGKLALGLLRGKLEE 110
Query: 122 EEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFD 181
L++ +I++ ++ ++ F + THSIP S +V+ TP G +V+ D+KFD
Sbjct: 111 HGLLRKAK-LHDIQEDDIIKFAKT-SVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFD 168
Query: 182 NNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEA-VAKMLLEDFFLYEGMEA 240
P GE + ++ ++G+EGV L+++ST T SE V + + F EG
Sbjct: 169 FT-PVGEPANLTKMAKIGEEGVLCLLSDSTNSEIPEFTMSERKVGESIDHIFRRVEGR-- 225
Query: 241 DGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSP 300
+I TFAS+I RLQ+ +E A + GR+ GRS+ I ++LG IK + + P
Sbjct: 226 --IIFATFASNIHRLQQAVESAVRYGRKVAVFGRSMESAINIGQELGYIKAPKNTFIE-P 282
Query: 301 NAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIP- 357
N ++K+ +++ TG QGEP A L+R+A G I P DTV+FS+ IP
Sbjct: 283 NQLNKL------PDNEVMILCTGSQGEPMAALSRVAFGTHRQIQIIPGDTVIFSSSPIPG 336
Query: 358 NPLNVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEF 413
N L+V++ +L G +I ++H SGH +E+ + ++R++ P+Y +P HGE+
Sbjct: 337 NTLSVSKTI---NQLYKAGANVIHGSLNDIHTSGHGGQEEQKLMLRLIKPKYFMPIHGEY 393
Query: 414 RMLTHYAELAEEEGYMIGKEVFISRNGHVVEI 445
RML + +LAE+ G + + FI NG V+ +
Sbjct: 394 RMLKMHTKLAEDCG-VPAENCFIMDNGDVLAL 424
>sp|Q45493|YKQC_BACSU HYPOTHETICAL 61.5 KD PROTEIN IN ADEC-PDHA INTERGENIC REGION
>gi|7429541|pir||B69862 conserved hypothetical protein
ykqC - Bacillus subtilis >gi|2633824|emb|CAB13326.1|
(Z99111) similar to hypothetical proteins [Bacillus
subtilis] >gi|3282138|gb|AAC24928.1| (AF012285) unknown
[Bacillus subtilis]
Length = 555
Score = 203 bits (511), Expect = 3e-51
Identities = 148/451 (32%), Positives = 238/451 (51%), Gaps = 48/451 (10%)
Query: 10 IYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRL--DRVLIHEDVEFQKMSSKDLRKLGAIP 67
++ LGG E+GKN AV++ E+V++D GI+ D +L + V IP
Sbjct: 11 VFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYV---------------IP 55
Query: 68 D-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125
D ++N+ K+ + ++HGH DHIG + L ++P+YG I L +++++
Sbjct: 56 DYTYLVKNEDKIKGLFITHGHEDHIGGIPYLLRQV-NIPVYGGKLAIGLLRNKLEEHGLL 114
Query: 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185
T L +IV+ + A+ F + THSIP S +V+ TP G +V+ D+KFD P
Sbjct: 115 RQTK-LNIIGEDDIVKFRKT-AVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFT-P 171
Query: 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG-LI 244
GE + ++ E+GKEGV L+++ST T SE + D F + DG +I
Sbjct: 172 VGEPANLTKMAEIGKEGVLCLLSDSTNSENPEFTMSERRVGESIHDIF----RKVDGRII 227
Query: 245 ATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVS 304
TFAS+I RLQ++IE A + GR+ GRS+ I + LG I + +
Sbjct: 228 FATFASNIHRLQQVIEAAVQNGRKVAVFGRSMESAIEIGQTLGYINCPKNTFIEH----- 282
Query: 305 KVLKEVSQARENYLLIV-TGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIP-NPL 360
E+++ N + I+ TG QGEP A L+R+ANG I P DTVVFS+ IP N +
Sbjct: 283 ---NEINRMPANKVTILCTGSQGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTI 339
Query: 361 NVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRML 416
+V++ +L G +I ++H SGH +E+ + ++R++ P++ +P HGE+RM
Sbjct: 340 SVSRTI---NQLYRAGAEVIHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQ 396
Query: 417 THYAELAEEEGYMIGKEVFISRNGHVVEIPG 447
+ +LA + G + + FI NG V+ + G
Sbjct: 397 KMHVKLATDCG-IPEENCFIMDNGEVLALKG 426
>pir||T35845 hypothetical protein SC9A10.09 SC9A10.09 - Streptomyces coelicolor
>gi|3413828|emb|CAA20296.1| (AL031260) hypothetical
protein SC9A10.09 [Streptomyces coelicolor A3(2)]
Length = 561
Score = 199 bits (501), Expect = 5e-50
Identities = 139/445 (31%), Positives = 217/445 (48%), Gaps = 37/445 (8%)
Query: 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67
+++ LGG E+G+NMT EY G ++IVD G+ ++ DL +P
Sbjct: 19 LRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPE---------EEQPGIDL----ILP 65
Query: 68 DDRPIRNK--KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125
D IR++ + I L+HGH DHIG V L PD+P+ G+ T+ L +++++
Sbjct: 66 DFTSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQEHRIR 125
Query: 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185
T + E + + EFV + HSIP + V I TP G VV+ D+K D
Sbjct: 126 PYTLEVAEGHRERVGPFD----CEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLPL 181
Query: 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIA 245
G D L +EG+ +L+A+ST P E +L F +I
Sbjct: 182 DGRLTDLHAFARLSEEGIDLLLADSTNAEVPGFVPPERDISNVLRQVF---ANARKRIIV 238
Query: 246 TTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVSK 305
+FASH+ R+Q++++ A++ GR+ F+GRS+ + GIA+ LG +K+ P V
Sbjct: 239 ASFASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKV-------PPGLVVD 291
Query: 306 VLKEVSQARENYLLIVTGHQGEPGAILTRMANGE-LYDIGPRDTVVFSAGVIPNPLNVAQ 364
V +L+ TG QGEP A L+RMAN + I DTV+ ++ +IP N
Sbjct: 292 VKTLDDLPDSEVVLVCTGSQGEPMAALSRMANRDHQIRIVNGDTVILASSLIPGNENAV- 350
Query: 365 RYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYA 420
Y + L G ++ +HVSGHAS + Y + P+ ++P HGE+R L A
Sbjct: 351 -YRVINGLTRWGANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANA 409
Query: 421 ELAEEEGYMIGKEVFISRNGHVVEI 445
EL G + + I+ +G VV++
Sbjct: 410 ELGALTG-VPHDRIVIAEDGVVVDL 433
>pir||G70879 hypothetical protein Rv2752c - Mycobacterium tuberculosis (strain
H37RV) >gi|2624274|emb|CAA15548.1| (AL008967)
hypothetical protein Rv2752c [Mycobacterium
tuberculosis]
Length = 558
Score = 191 bits (480), Expect = 1e-47
Identities = 133/447 (29%), Positives = 226/447 (49%), Gaps = 40/447 (8%)
Query: 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67
+++ LGG E+G+NMT E+ G ++I+D G+ H++ DL +P
Sbjct: 16 LRVTALGGINEIGRNMTVFEHLGRLLIIDCGVLFPG---HDE------PGVDL----ILP 62
Query: 68 DDRPIRNK--KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125
D R + ++ + A+ L+HGH DHIGA+ L PD+P+ G+ +T+ L + + +
Sbjct: 63 DMRHVEDRLDDIEALVLTHGHEDHIGAIPFLLKLRPDIPVVGSKFTLALVAEKCRE---Y 119
Query: 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185
+T E G+ + E+ + HS P + + ++T G +++ D KFD P
Sbjct: 120 RITPVFVEVREGQSTRHGV-FECEYFAVNHSTPDALAIAVYTGAGTILHTGDIKFDQLPP 178
Query: 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG-LI 244
G D + LG GV +L+ +ST PSE+ L L G ADG +I
Sbjct: 179 DGRPTDLPGMSRLGDTGVDLLLCDSTNAEIPGVGPSESEVGPTLHR--LIRG--ADGRVI 234
Query: 245 ATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVS 304
FAS++ R+Q++I+ A +GR+ F+GRS+ + +A+QLG +++ S ++
Sbjct: 235 VACFASNVDRVQQIIDAAVALGRRVSFVGRSMVRNMRVARQLGFLRVADSDLI------- 287
Query: 305 KVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDI--GPRDTVVFSAGVIPNPLNV 362
+ + A + +LI TG QGEP + L+RM+ GE I D +V S+ +IP N
Sbjct: 288 DIAAAETMAPDQVVLITTGTQGEPMSALSRMSRGEHRSITLTAGDLIVLSSSLIPG--NE 345
Query: 363 AQRYALETKLRMKGVRMIKN----LHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTH 418
+ + L G R++ N +HVSGHA + +L + P ++P HG +RML
Sbjct: 346 EAVFGVIDALSKIGARVVTNAQARVHVSGHAYAGELLFLYNGVRPRNVMPVHGTWRMLRA 405
Query: 419 YAELAEEEGYMIGKEVFISRNGHVVEI 445
A+LA G + + + ++ NG V++
Sbjct: 406 NAKLAASTG-VPQESILLAENGVSVDL 431
>sp|P56185|YE30_HELPY HYPOTHETICAL PROTEIN HP1430 >gi|7463927|pir||F64698 conserved
hypothetical ATP-binding protein HP1430 - Helicobacter
pylori (strain 26695) >gi|2314602|gb|AAD08469.1|
(AE000643) conserved hypothetical ATP-binding protein
[Helicobacter pylori 26695]
Length = 689
Score = 187 bits (471), Expect = 2e-46
Identities = 138/450 (30%), Positives = 221/450 (48%), Gaps = 44/450 (9%)
Query: 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67
+KI LGG E+G NM +E +++D G+ + E + + D L I
Sbjct: 141 VKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPK----EGLFGVDILIPDFSYLHQIK 196
Query: 68 DDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEI------KG 121
D K+ I ++H H DHIGA L P+YGTP ++ L S+ K
Sbjct: 197 D-------KIAGIIITHAHEDHIGATPYLFKEL-QFPLYGTPLSLGLIGSKFDEHGLKKY 248
Query: 122 EEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFD 181
YF++ + GE + IE++ ITHSI SS + I T G +++ D+K D
Sbjct: 249 RSYFKIVEKRCPISVGEFI-------IEWIHITHSIIDSSALAIQTKAGTIIHTGDFKID 301
Query: 182 NNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEAD 241
+ D RL G++GV +L+++ST + TPSE+ + F EA
Sbjct: 302 HTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLF----KEAQ 357
Query: 242 G-LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSP 300
G +I +TF+S+I R+ + I+ K R+ IGRS+ K IA++LG I + + +
Sbjct: 358 GRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEA- 416
Query: 301 NAVSKVLKEVSQARENYLLIV-TGHQGEPGAILTRMANGE--LYDIGPRDTVVFSAGVIP 357
EV++ +N +LIV TG QGE + L RMA E I P D V+ SA IP
Sbjct: 417 -------NEVAKYPDNEILIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIP 469
Query: 358 -NPLNVAQRYALETKLRMK-GVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRM 415
N +V+ K K + N+HVSGHA++E+ + ++R++ P++ +P HGE+
Sbjct: 470 GNEASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNH 529
Query: 416 LTHYAELAEEEGYMIGKEVFISRNGHVVEI 445
+ + + A G + K +++ +G VE+
Sbjct: 530 VARHKQTAISCG-VPEKNIYLMEDGDQVEV 558
>sp|Q9ZJI6|YE30_HELPJ HYPOTHETICAL PROTEIN HP1430/JHP1323 >gi|7465002|pir||F71821
hypothetical protein jhp1323 - Helicobacter pylori
(strain J99) >gi|4155934|gb|AAD06901.1| (AE001555)
putative [Helicobacter pylori J99]
Length = 692
Score = 187 bits (470), Expect = 2e-46
Identities = 138/450 (30%), Positives = 221/450 (48%), Gaps = 44/450 (9%)
Query: 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67
+KI LGG E+G NM +E +++D G+ + E + + D L I
Sbjct: 144 VKITPLGGLGEIGGNMMVIETPKSAIVIDAGMSFPK----EGLFGVDILIPDFSYLHQIK 199
Query: 68 DDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEI------KG 121
D K+ I ++H H DHIGA L P+YGTP ++ L S+ K
Sbjct: 200 D-------KIAGIIITHAHEDHIGATPYLFKEL-QFPLYGTPLSLGLIGSKFDEHGLKKY 251
Query: 122 EEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFD 181
YF++ + GE + IE++ ITHSI SS + I T G +++ D+K D
Sbjct: 252 RSYFKIVEKRCPISVGEFI-------IEWIHITHSIIDSSALAIQTKAGTIIHTGDFKID 304
Query: 182 NNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEAD 241
+ D RL G++GV +L+++ST + TPSE+ + F EA
Sbjct: 305 HTPVDNLPTDLYRLAHYGEKGVMLLLSDSTNSHKSGTTPSESTIAPAFDTLF----KEAQ 360
Query: 242 G-LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSP 300
G +I +TF+S+I R+ + I+ K R+ IGRS+ K IA++LG I + + +
Sbjct: 361 GRVIMSTFSSNIHRVHQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHLPYQSFIEA- 419
Query: 301 NAVSKVLKEVSQARENYLLIV-TGHQGEPGAILTRMANGE--LYDIGPRDTVVFSAGVIP 357
EV++ +N +LIV TG QGE + L RMA E I P D V+ SA IP
Sbjct: 420 -------NEVAKYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPNDLVIISAKAIP 472
Query: 358 -NPLNVAQRYALETKLRMK-GVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRM 415
N +V+ K K + N+HVSGHA++E+ + ++R++ P++ +P HGE+
Sbjct: 473 GNEASVSAVLNFLIKKEAKVAYQEFDNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYNH 532
Query: 416 LTHYAELAEEEGYMIGKEVFISRNGHVVEI 445
+ + + A G + K +++ +G VE+
Sbjct: 533 VARHKQTAIACG-VPEKNIYLMEDGDQVEV 561
>dbj|BAB06117.1| (AP001515) unknown conserved protein [Bacillus halodurans]
Length = 555
Score = 186 bits (468), Expect = 4e-46
Identities = 138/445 (31%), Positives = 225/445 (50%), Gaps = 38/445 (8%)
Query: 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRL-DRVLIHEDVEFQKMSSKDLRKLGAI 66
I+++ LGG E+GKNM VE + ++ ++D G+ D ++ DV I
Sbjct: 9 IRVFALGGVGEIGKNMYVVEVDDDLFVIDAGLMFPDDEMLGVDV--------------VI 54
Query: 67 PDDRPI--RNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEY 124
PD + ++V AI L+HGH DHIG + + +VP+YGT T+ L + ++K
Sbjct: 55 PDISYLVENEERVRAILLTHGHEDHIGGLPYVLQKL-NVPVYGTKLTLGLVEEKLKEAGL 113
Query: 125 FEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNH 184
+ + S + F + HSIP S + I T +G +V+ D+KFD
Sbjct: 114 IRSAKLKLIDSNSRLKLGST--PVSFFRTNHSIPDSVGICIQTSQGFIVHTGDFKFDQTP 171
Query: 185 PYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEA-VAKMLLEDFFLYEGMEADGL 243
G++ + ++ +G +GV L+++ST T SE V + + E F +G +
Sbjct: 172 VDGKQAEIGKMAAIGHKGVLCLLSDSTNAERPGMTKSETEVGRGIAEAFEQTKGR----I 227
Query: 244 IATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAV 303
I TTFAS++ R+Q++I A R+ GRS+ K IA++LG L +P+ +
Sbjct: 228 IVTTFASNVHRVQQVIHAAIATNRKLAVAGRSMVKVVSIAERLG--------YLEAPDDL 279
Query: 304 SKVLKEVSQ-ARENYLLIVTGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIP-NP 359
++EVS+ E +I TG QGEP + L+RMA G I DTV+ +A IP N
Sbjct: 280 FIDIEEVSKYDDERVAIITTGSQGEPMSALSRMAKGAHRQITITENDTVIIAATPIPGNE 339
Query: 360 LNVAQRYALETKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHY 419
+V+ L ++ + +H SGH S E+ + ++ ++ P++ VP HGEFRM +
Sbjct: 340 RSVSTIVDLLHRIGADVIFGHGKVHASGHGSAEELKLMLNLMRPKFFVPIHGEFRMQHAH 399
Query: 420 AELAEEEGYMIGKEVFISRNGHVVE 444
ELA+ G + + +F+ G VVE
Sbjct: 400 KELAKSVG-IREEAIFLVDKGEVVE 423
>sp|P47385|Y139_MYCGE HYPOTHETICAL PROTEIN MG139 >gi|1361567|pir||D64215 conserved
hypothetical protein MG139 - Mycoplasma genitalium
>gi|3844731|gb|AAC71357.1| (U39694) conserved
hypothetical protein [Mycoplasma genitalium]
Length = 569
Score = 183 bits (460), Expect = 3e-45
Identities = 135/446 (30%), Positives = 226/446 (50%), Gaps = 42/446 (9%)
Query: 9 KIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKL-GAIP 67
KIY GG +EVGKNM +EY+ E++I+D GI K +S DL + G IP
Sbjct: 17 KIYAFGGIQEVGKNMYGIEYDDEIIIIDCGI--------------KFASDDLLGINGIIP 62
Query: 68 D-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125
+ I N+ KV A+ ++HGH DHIG V L IY L ++ +
Sbjct: 63 SFEHLIENQSKVKALFITHGHEDHIGGVPYLLKQVDIPVIYAPRIAASLILKKVNEHKDA 122
Query: 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185
++ + ++ E +++ I+F ++ HSIP + + + TP G +V + DY+FD
Sbjct: 123 KLNKIVTFDDFSEFQ--TKHFKIDFYRVNHSIPDAFGICVQTPNGNIVQSGDYRFDFAAG 180
Query: 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADG-LI 244
E D ++ ++ + V V ++EST + SE + ++ EA G +I
Sbjct: 181 -SEMLDVHKVVKIAERNVHVFMSESTNAEVPGFSQSEKLIYRNIQKIL----KEARGRVI 235
Query: 245 ATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVS 304
TTFAS+I R+ E+IEIA R+ +G+S+ I++++GL+ + N +
Sbjct: 236 LTTFASNITRINEIIEIALNNKRKICLLGKSMDVNVNISRKIGLMAIDS-------NDIV 288
Query: 305 KVLKEVSQARENYLLIVTGHQGEPGAILTRMANGE--LYDIGPRDTVVFSAGVIPNPLNV 362
+V + N L++ TG QGE A L MA G+ + DT++ S+ IP N
Sbjct: 289 EVRDIKNYPDRNILILCTGSQGEEAAALNTMARGKHNWVSLKSTDTIIMSSNPIPG--NY 346
Query: 363 AQRYALETKLRMKGVRMIKN-----LHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLT 417
A L +L GV + +N LH SGHA++++ + ++ ++ P+Y++P HGEF+M+
Sbjct: 347 AAVENLLNELSKFGVAIYENSSQLKLHASGHATQQELQLMLNLMFPKYLIPIHGEFKMMR 406
Query: 418 HYAELAEEEGYMIGKEVFISRNGHVV 443
+A E G + ++V + NG V+
Sbjct: 407 TIKNIANECG-IKSEDVALLSNGQVM 431
>pir||G82874 conserved hypothetical UU570 [imported] - Ureaplasma urealyticum
>gi|6899578|gb|AAF30984.1|AE002155_6 (AE002155)
conserved hypothetical [Ureaplasma urealyticum]
Length = 596
Score = 179 bits (449), Expect = 6e-44
Identities = 123/444 (27%), Positives = 220/444 (48%), Gaps = 36/444 (8%)
Query: 10 IYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIPDD 69
+Y LGG EE+GKN VE+ E++++D GI+ F S A D
Sbjct: 11 VYALGGLEEIGKNTYVVEHEDEIILIDAGIK-----------FANASLPGFDGTVANFDY 59
Query: 70 RPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYFEVTN 129
N K+ ++ ++HGH DHIG + + H IY +L + + EY ++
Sbjct: 60 LIKNNHKIHSLVVTHGHEDHIGGIPHILRHVKIKTIYAPTLAAKLIERRLS--EYKDIKP 117
Query: 130 PLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHPYGER 189
P E + ++ ++F ++ HSIP S + + TP G +V D++FD G+
Sbjct: 118 PRIIVFEDESMYKTKYFEVDFYRVCHSIPDSFGICVKTPNGYIVTTGDFRFDFATA-GDE 176
Query: 190 PDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIATTFA 249
+ ++ ++ G+ VL+ EST + SE + D+ + ++ I+T FA
Sbjct: 177 TNLAKISQISNRGISVLMCESTSAEIPGFSESERYVIDNIRDYMV--NIKGRTFIST-FA 233
Query: 250 SHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVSKVLKE 309
S++ R++E+I IA + ++ IG+S+ +++LG + + S + KE
Sbjct: 234 SNLGRVEEIIAIAVGLNKKICIIGKSMEANIKTSRKLGYLNVPESSFITH--------KE 285
Query: 310 VSQARENYLLIV-TGHQGEPGAILTRMANGELYDIG--PRDTVVFSAGVIPNPLNVAQRY 366
+ +++ ++++ TG QGE A L MAN I P DT++ S+ IP N AQ
Sbjct: 286 LPFYKDHEIVVILTGSQGEKMAALNVMANNNHSKITLKPSDTIILSSNPIPG--NYAQVE 343
Query: 367 ALETKLRMKGVRMIKN-----LHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAE 421
A+ KL G+ + +N +H SGHA++ +H+ +I+ +NP Y+ P HGE++M +
Sbjct: 344 AMVNKLYKLGLTVYENSPNKKIHASGHATRSEHQLMIKAINPSYLFPIHGEYKMFRALKQ 403
Query: 422 LAEEEGYMIGKEVFISRNGHVVEI 445
A ++G+ V I+ NG +++
Sbjct: 404 NAVDQGF-DKDHVIIAPNGQKLQL 426
>sp|P75497|Y139_MYCPN HYPOTHETICAL PROTEIN MG139 HOMOLOG (A65_ORF569)
>gi|2146372|pir||S73881 conserved hypothetical protein
MG139 homolog A65_orf569 - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674253|gb|AAB96203.1| (AE000054)
similar to single stranded RNA(DNA) processing enzymes
[Mycoplasma pneumoniae]
Length = 569
Score = 178 bits (446), Expect = 1e-43
Identities = 139/453 (30%), Positives = 228/453 (49%), Gaps = 56/453 (12%)
Query: 9 KIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKL-GAIP 67
KI+ GG +EVGKNM +EY+ E++I+D GI K +S DL + G IP
Sbjct: 17 KIFAFGGIQEVGKNMYGIEYDDEIIIIDCGI--------------KFASDDLLGIDGIIP 62
Query: 68 D-DRPIRNK-KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125
+ I N+ KV A+ ++HGH DHIG V L DVP+ P R+A S I
Sbjct: 63 SFEYLIENQAKVKALFITHGHEDHIGGVPYLLKQV-DVPVIYAP---RIAASLI-----L 113
Query: 126 EVTNPLYETNYGEIVQVSE-------NLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDY 178
+ N + ++V + + I+F ++ HSIP + V + TP G +V + D+
Sbjct: 114 KKVNEHKDAKLNKVVVYDDFSNFETKHFKIDFYRVNHSIPDAFGVCVQTPNGNIVESGDF 173
Query: 179 KFDNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGM 238
+FD GE D ++ ++ + V V + E+T + SE + +
Sbjct: 174 RFDFAAG-GEMLDVHKVVKIAERNVHVFMCETTNAEIPGFSQSEKLIYRNINKII----K 228
Query: 239 EADG-LIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVL 297
EA G +I TTFAS+I R+ E+IEIA R+ +G+S+ I++++GL+ +
Sbjct: 229 EARGRVILTTFASNITRINEIIEIAVNNKRKVCLLGKSMDVNVNISRKIGLMDIDS---- 284
Query: 298 RSPNAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGE--LYDIGPRDTVVFSAGV 355
N + +V + + L++ TG QGE A L MA G+ + DT++ S+
Sbjct: 285 ---NDIVEVRDIKNYPDRSILILCTGSQGEDSAALNTMARGKHNWVSLKSTDTIIMSSNP 341
Query: 356 IPNPLNVAQRYALETKLRMKGVRMIKN-----LHVSGHASKEDHRYLIRMLNPEYIVPAH 410
IP N A L +L GV + +N LH SGHA++++ + ++ ++ P Y++P H
Sbjct: 342 IPG--NYAAVENLLNELSKYGVTIFENSPNMKLHASGHATQQELQLMLNLVFPRYLIPIH 399
Query: 411 GEFRMLTHYAELAEEEGYMIGKEVFISRNGHVV 443
GE++M+ +A+E G + G +V + NG V+
Sbjct: 400 GEYKMMRTIKNIAQECG-INGDDVGLLANGQVM 431
>gb|AAD02119.1| (AF039028) unknown [Streptomyces toyocaensis]
Length = 528
Score = 176 bits (442), Expect = 4e-43
Identities = 134/432 (31%), Positives = 219/432 (50%), Gaps = 41/432 (9%)
Query: 23 MTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIPDDRPIRNK--KVVAI 80
MT E+ G+++IVD G VL E+ + D+ +PD IR++ VVA+
Sbjct: 1 MTVFEHAGKLLIVDCG-----VLFPEETQ----PGVDV----ILPDFTSIRDRLDDVVAV 47
Query: 81 ALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYFEVTNPLYETNYGEIV 140
L+HGH DHIG V L D+P+ G+ T+ ++++K T + E + +
Sbjct: 48 VLTHGHEDHIGGVPYLLRERRDIPVVGSKLTLAFLEAKLKEHGIRPRTVRVREGDRRGLG 107
Query: 141 QVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHPYGER-PDYKRLKELG 199
EFV + HSIP S V I T G V++ D+K D P +R D + LG
Sbjct: 108 PFD----CEFVAVNHSIPDSLAVAIRTRAGMVLHTGDFKMDQ-FPLDDRITDLRAFARLG 162
Query: 200 KEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIATTFASHIARLQELI 259
+EGV + + +ST T SE +E +I ++FASH+ R+Q+++
Sbjct: 163 EEGVDLFLTDSTNAEVPGFTTSERELNPAIEQVMRTAPRR---VIVSSFASHVHRIQQVL 219
Query: 260 EIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVSKVLKEVSQARENYL- 318
+ A++ GR+ F+GRS+ + GIA+ LG +K+ P+ + KE+ + ++ +
Sbjct: 220 DAAHQHGRKVAFVGRSMVRNMGIARDLGYLKV--------PSGLVVSTKELEKLPDHKIT 271
Query: 319 LIVTGHQGEPGAILTRMANGE-LYDIGPRDTVVFSAGVIPNPLNVAQRYALETKLRMKGV 377
L+ TG QGEP A L+RMAN + + IG DTV+ ++ +IP N Y + L G
Sbjct: 272 LVCTGSQGEPMAALSRMANRDHMIRIGKGDTVLLASSLIPGNENAI--YRVINGLTRWGA 329
Query: 378 RMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAELAEEEGYMIGKE 433
++ +HVSGHAS + Y ++ P ++P HGE+R L +LA G + +
Sbjct: 330 HVVHKGNAKVHVSGHASAGELVYCYNIVKPRNVMPVHGEWRHLRANGDLAIRTG-VDPER 388
Query: 434 VFISRNGHVVEI 445
V I+ + +V++
Sbjct: 389 VVIAEDSVIVDL 400
>pir||B81269 hypothetical protein Cj1710c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6969125|emb|CAB73696.1|
(AL139079) hypothetical protein Cj1710c [Campylobacter
jejuni]
Length = 664
Score = 174 bits (437), Expect = 2e-42
Identities = 134/447 (29%), Positives = 214/447 (46%), Gaps = 38/447 (8%)
Query: 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67
I+I LGG E+G N++ E N + +IVD+G+ +H D+ IP
Sbjct: 116 IRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMH---------GVDI----IIP 162
Query: 68 DDRPIRN--KKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYF 125
D +R K+ I ++H H DHIGAV + PIY TP + + ++ +
Sbjct: 163 DFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEF-QFPIYATPLALGMISNKFEEHGLK 221
Query: 126 EVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHP 185
+ ++ E IE++ ITHSI +S + I T G +++ D+K D
Sbjct: 222 AERKWFRPVEKRRVYEIGE-FDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKIDQTPI 280
Query: 186 YGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIA 245
G D RL G+EGV L+++ST +E T SE+ + F +I
Sbjct: 281 DGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIF---ARTKGRVIM 337
Query: 246 TTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVSK 305
+TF+S+I R+ + I K GR+ IGRS+ + +LG IK+ + +
Sbjct: 338 STFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDA------ 391
Query: 306 VLKEVSQARENYLLIV-TGHQGEPGAILTRMANGE--LYDIGPRDTVVFSAGVIPNPLNV 362
EVS+ ++N +LIV TG QGE + L RMA E I P D V+ SA IP N
Sbjct: 392 --DEVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPG--NE 447
Query: 363 AQRYALETKLRMKGVRM----IKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTH 418
A A+ L G ++ +HVSGHAS E+ + ++ + P++ +P HGE+ +T
Sbjct: 448 ASVSAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITK 507
Query: 419 YAELAEEEGYMIGKEVFISRNGHVVEI 445
+ E A + G + + +++ +G VE+
Sbjct: 508 HKETAMKCG-IPERNIYLMSDGDQVEL 533
>sp|P54122|YOR4_CORGL HYPOTHETICAL 69.1 KD PROTEIN (ORF4) >gi|1200047|emb|CAA64951.1|
(X95649) function unknown [Corynebacterium glutamicum]
Length = 645
Score = 174 bits (436), Expect = 2e-42
Identities = 137/451 (30%), Positives = 209/451 (45%), Gaps = 44/451 (9%)
Query: 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGA 65
N ++IY LGG E+G+NMT EYN ++IVD G+ SS +
Sbjct: 152 NGLRIYALGGISEIGRNMTVFEYNNRLLIVDCGVLFP-------------SSGEPGVDLI 198
Query: 66 IPDDRPIRNK--KVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEE 123
+PD PI + +V A+ ++HGH DHIGA+ L D+PI + +T+ L ++ K
Sbjct: 199 LPDFGPIEDHLHRVDALVVTHGHEDHIGAIPWLLNVRNDIPILASRFTLALIAAKCKEHR 258
Query: 124 YFEVTNPLYETNYGEIVQVSENLA---IEFVQITHSIPQSSIVVIHTPEGAVVYACDYKF 180
L E N Q +E+ I F + HSIP + I TP G V++ D K
Sbjct: 259 Q---RPKLIEVNE----QSNEDRGPFNIRFWAVNHSIPDCLGLAIKTPAGLVIHTGDIKL 311
Query: 181 DNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEA 240
D P G D L G EGV +++ +ST + SEA L+ G
Sbjct: 312 DQTPPDGRPTDLPALSRFGDEGVDLMLCDSTNATTPGVSGSEADVAPTLKRLV---GDAK 368
Query: 241 DGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSP 300
+I +FAS++ R+Q ++ A R+ F GRS+ + IA++LG +K ++
Sbjct: 369 QRVILASFASNVYRVQAAVDAAVASNRKVAFNGRSMIRNMEIAEKLGYLKAPRGTIISMD 428
Query: 301 NAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMANGELYDIGPR--DTVVFSAGVIPN 358
+A A +LI TG QGEP A L+RMA E I R D ++ S+ ++P
Sbjct: 429 DA-------SRMAPHKVMLITTGTQGEPMAALSRMARREHRQITVRDGDLIILSSSLVPG 481
Query: 359 PLNVAQRYALETKLRMKGVRMI----KNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFR 414
N + + L G ++ +H SGH + +L P+ +P HGE+R
Sbjct: 482 --NEEAVFGVINMLAQIGATVVTGRDAKVHTSGHGYSGELLFLYNAARPKNAMPVHGEWR 539
Query: 415 MLTHYAELAEEEGYMIGKEVFISRNGHVVEI 445
L ELA G + V +++NG VV++
Sbjct: 540 HLRANKELAISTG-VNRDNVVLAQNGVVVDM 569
>pir||H69884 conserved hypothetical protein ymfA - Bacillus subtilis
>gi|2634050|emb|CAB13551.1| (Z99112) similar to
hypothetical proteins [Bacillus subtilis]
Length = 515
Score = 171 bits (429), Expect = 1e-41
Identities = 122/378 (32%), Positives = 196/378 (51%), Gaps = 17/378 (4%)
Query: 73 RNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEYFEVTNPLY 132
R +V AI L+HGH ++IG V L VP+YGT T+ L + ++K + T+ L
Sbjct: 23 RADRVKAIFLTHGHDENIGGVFYLLNKL-SVPVYGTKLTLALLREKLKQYGHNRKTD-LR 80
Query: 133 ETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNHPYGERPDY 192
E + ++ ++ + F + HSIP S V T G++V A D+KFD + D
Sbjct: 81 EIHSKSVITF-QSTKVSFFRTIHSIPDSVGVSFKTSLGSIVSAGDFKFDQTPALNQTCDI 139
Query: 193 KRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLIATTFASHI 252
+ ++G GV L+++S V TPSEA + D LY +I FAS+I
Sbjct: 140 GEIAKIGNSGVLALLSDSANVERPGYTPSEAAVSGEISDA-LYNSQNR--VIIAVFASNI 196
Query: 253 ARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAVSKVLKEVSQ 312
R+Q++I A + GR+ G++L +A++LG I+ + + +EV+
Sbjct: 197 NRIQQVIHAAAQNGRKIAVAGKNLQSVLQLARKLGYIEADDELFISVQDVKKYPKREVA- 255
Query: 313 ARENYLLIVTGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIPNP-LNVAQRYALE 369
+I G QGEP A LTRMAN + +I DTVV ++ IP L ++ L
Sbjct: 256 ------IITAGSQGEPLAALTRMANKAHKQLNIEEGDTVVIASTPIPGQELIYSKTVDLL 309
Query: 370 TKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLTHYAELAEEEGYM 429
+ + + K +HVSGH S+E+ + +I +L P+Y++P +GE+RM ++++AEE G M
Sbjct: 310 ARAGAQVIFAQKRVHVSGHGSQEELKLMINLLKPKYLIPVNGEYRMQKAHSKIAEETG-M 368
Query: 430 IGKEVFISRNGHVVEIPG 447
++F+ G VVE G
Sbjct: 369 KRSDIFLIEKGDVVEFRG 386
>pir||H71702 hypothetical protein RP441 - Rickettsia prowazekii
>gi|3860998|emb|CAA14898.1| (AJ235271) unknown
[Rickettsia prowazekii]
Length = 560
Score = 162 bits (406), Expect = 7e-39
Identities = 131/447 (29%), Positives = 213/447 (47%), Gaps = 42/447 (9%)
Query: 6 NMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRL-DRVLIHEDVEFQKMSSKDLRKLG 64
N + LGG E+G N+ Y G+ +++D G D L D+ S + K
Sbjct: 11 NDLLFVPLGGSNEIGMNLNLYHYKGKWLMIDCGSGFADDYLPGVDMIIADSSFIEKYK-- 68
Query: 65 AIPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYTIRLAKSEIKGEEY 124
K +V + L+H H DH+G V L PIY T +T K I+ EY
Sbjct: 69 ----------KDLVGLILTHAHEDHLGGVQYLWNSLK-CPIYTTTFTANFLK--IRLNEY 115
Query: 125 -FEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNN 183
F ++E G + + E ++E V +THS P+ ++I T G +++ D+KFDN+
Sbjct: 116 DFAKNIKIHEVKPGSKINL-EPFSLEMVPLTHSAPEMQAIMIRTDSGNILHTGDWKFDND 174
Query: 184 HPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGL 243
G++ D + LK G EGV L+ +ST V + + SE + L D + G +
Sbjct: 175 PILGKKVDEELLKSYGDEGVLALVCDSTNVFNKGSSGSEGDVRKSLID--IIAGC-PQMV 231
Query: 244 IATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAV 303
+ +TFAS++ARL ++ A GR+ + GRSL + A++ G K +
Sbjct: 232 VVSTFASNLARLDTIMHAARLAGRKVVLTGRSLYRMIFAAQESGYFKDLAPLISE----- 286
Query: 304 SKVLKEVSQARENYLLIV-TGHQGEPGAILTRMANGE--LYDIGPRDTVVFSAGVIPNPL 360
++VS+ R LL++ TG QGE A ++A+ + P+DT++FSA +IP
Sbjct: 287 ----RDVSRFRRKELLVIATGCQGESMAATAKLASNSHPSIKLAPQDTMIFSAKIIPG-- 340
Query: 361 NVAQRYALETKLRMKGVRMIKN----LHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRML 416
N + + L GV ++ +HVSGH S ++ + + ++ P +P HGE +
Sbjct: 341 NEKKIFRLFNVFVKAGVEVMTERDHFVHVSGHPSIDELQKMYSLIRPNICIPVHGEPVHI 400
Query: 417 THYAELAEEEGYMIGKEVFISRNGHVV 443
+ +LA++ G EV NG VV
Sbjct: 401 HEHVKLAKKNGIEHAIEV---ENGSVV 424
>dbj|BAB08807.1| (AB007649) gene_id:MLE2.5~similar to unknown protein~sp|P54122
[Arabidopsis thaliana]
Length = 528
Score = 154 bits (385), Expect = 2e-36
Identities = 121/430 (28%), Positives = 213/430 (49%), Gaps = 40/430 (9%)
Query: 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67
++I +GG E+G N V +++D GI F ++K+ +P
Sbjct: 110 LRILPIGGLGEIGMNCMLVGNYDRYILIDAGIM-----------FPDYDEPGIQKI--MP 156
Query: 68 DDRPIRN--KKVVAIALSHGHLDHIGAVGKLAPHY-PDVPIYGTPYTIRLAKSEIKGEEY 124
D IR K+ A+ ++HGH DHIGA+ + P P+ PI+ + +T+ L K +K
Sbjct: 157 DTGFIRRWKHKIEAVVITHGHEDHIGALPWVIPALDPNTPIFASSFTMELIKKRLKEHGI 216
Query: 125 FEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYKFDNNH 184
F + +T ++ IE + +THSIP S + + +G +++ D+K D
Sbjct: 217 FVQSR--LKTFSTRRRFMAGPFEIEPITVTHSIPDCSGLFLRCADGNILHTGDWKIDEAP 274
Query: 185 PYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGMEADGLI 244
G+ D + L+EL KEGV +++++ST V +P +++ ++ D + M A G +
Sbjct: 275 LDGKVFDREALEELSKEGVTLMMSDSTNVL----SPGRTISEKVVADALVRNVMAAKGRV 330
Query: 245 ATT-FASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRSPNAV 303
TT FAS+I RL + A+ GR+ +F+G SL Y A + G + P+++
Sbjct: 331 ITTQFASNIHRLGSIKAAADITGRKLVFVGMSLRTYLEAAWRDGKAPI-------DPSSL 383
Query: 304 SKVLKEVSQARENYLLIVTGHQGEPGAILTRMANG--ELYDIGPRDTVVFSAGVIPNPLN 361
KV + A ++ L++ TG Q EP A L + G + + D +++SA VIP N
Sbjct: 384 IKVEDIEAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDIILYSAKVIPG--N 441
Query: 362 VAQRYALETKLRMKGVRMI--KN--LHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRMLT 417
++ + ++ G +I KN LH SGHA + + +++++ P++ +P HGE L
Sbjct: 442 ESRVMKMMNRIADIGPNIIMGKNEMLHTSGHAYRGE--LVLKIVKPQHFLPIHGELLFLK 499
Query: 418 HYAELAEEEG 427
+ L + G
Sbjct: 500 EHELLGKSTG 509
>gb|AAD25735.1|AF100324_3 (AF100324) unknown [Mycoplasma fermentans]
Length = 550
Score = 71.4 bits (172), Expect = 2e-11
Identities = 89/448 (19%), Positives = 183/448 (39%), Gaps = 39/448 (8%)
Query: 5 INMIKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLG 64
+N I I+ LGG +E GKN E+N ++ I++ G ++ + + V+ S + L K
Sbjct: 1 MNHINIFALGGLDENGKNCYVFEFNDDIYIINSGTKIP-INSNNGVDTLIPSFEYLEK-- 57
Query: 65 AIPDDRPIRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYT-----IRLAKSEI 119
++ I +S + A+ L P++ IY + + RL+K +I
Sbjct: 58 --------HKDRIKGIFISDVKNESFSALPWLLMKIPNLTIYTSAFNKIMIMDRLSKYKI 109
Query: 120 KGEEYFEVTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVVIHTPEGAVVYACDYK 179
+ Y + ++ S+ L ++ + + S+P TP+G +++ ++
Sbjct: 110 PTKNYKVMV-------INKVTPFSDKLFVKPIDLAGSMPGHIGFDFITPDGDILFMFNFV 162
Query: 180 FDNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKTPSEAVAKMLLEDFFLYEGME 239
+ YG+ + + K + L+ +S + K + + D FL E +
Sbjct: 163 EGDLGIYGKLSFNELKQRFTKRKILALVVDSGKANFGGKAIEKIGLPEGIRDVFL-ETKK 221
Query: 240 ADGLIATTFASHIARLQELIEIANKMGRQAIFIGRSLAKYTGIAKQLGLIKMKGSRVLRS 299
+ +I + + + +++E+A + R + G++ Q+ + K L+
Sbjct: 222 NERIIVGAYDEEMVAIHKILELAQETSRPVVTYGKTYG-------QIFYLIKKAHPELKL 274
Query: 300 PNAVSKVLKEVSQARENYLLIVTGHQGEPGAILTRMA--NGELYDIGPRDTVVFSAGVIP 357
P + + ++ + N +++VTG + R+ N + DTVV A I
Sbjct: 275 PELID--YRNANKVK-NAVILVTGATERLYSRFIRITDNNDVFLKLQKSDTVVMIAPPI- 330
Query: 358 NPLNVAQRYALE--TKLRMKGVRMIKNLHVSGHASKEDHRYLIRMLNPEYIVPAHGEFRM 415
N L + L+ ++ K + N +K+D L+ LNPEY++P G +R
Sbjct: 331 NGLESLEALTLDEIARITPKISDVNANEFYRCRPAKQDLIDLVNALNPEYVIPVQGLYRY 390
Query: 416 LTHYAELAEEEGYMIGKEVFISRNGHVV 443
L E + + +NG +V
Sbjct: 391 LNEATIAISENTQVKQNHCLVMQNGKIV 418
>pir||C72749 probable cleavage and polyadenylation factor subunit APE0522 -
Aeropyrum pernix (strain K1) >gi|5104171|dbj|BAA79487.1|
(AP000059) 676aa long hypothetical cleavage and
polyadenylation factor subunit [Aeropyrum pernix]
Length = 676
Score = 71.4 bits (172), Expect = 2e-11
Identities = 120/507 (23%), Positives = 206/507 (39%), Gaps = 107/507 (21%)
Query: 8 IKIYTLGGYEEVGKNMTAVEYNGEVVIVDMGIRLDRVLIHEDVEFQKMSSKDLRKLGAIP 67
+++ LG + EVG++ V+ V++D G L G P
Sbjct: 197 VRVVGLGSFGEVGRSAILVDTGESKVLLDAG---------------------LSPSGYGP 235
Query: 68 DDRP------IRNKKVVAIALSHGHLDHIGAVGKLAPHYPDVPIYGTPYT---------- 111
D P R ++ A+ +SH HLDH+G + L + P+Y TP T
Sbjct: 236 DSYPYYWSPEFRVDELDAVVISHAHLDHVGTLPLLFKYGFRGPVYATPPTRDIMIIVLRD 295
Query: 112 -IRLAKSEIKGEEYFE------VTNPLYETNYGEIVQVSENLAIEFVQITHSIPQSSIVV 164
I L + + +GE FE L NY + V+ ++ + F+ H I SS+V
Sbjct: 296 LINLMR-KAQGEPPFEPRDVEKALTRLIPVNYNTVTDVAPDIKMTFINAGH-ILGSSMVH 353
Query: 165 IHTPEGA--VVYACDYKF---DNNHPYGERPDYKRLKELGKEGVKVLIAESTRVAEETKT 219
+H +G ++Y D+KF N+ P E + V+ LI E+T ++ET+
Sbjct: 354 LHIGQGLYNILYTADFKFYRIKNDRSTRLLPP----AEYSFQRVEALIMEATYGSKETQP 409
Query: 220 PSEAVAKMLLEDFFLYEGMEADGLIATTFASHIARLQELIEIANKMGRQA------IFIG 273
+EA +++ +Y+ L+ A + R QE++ + N+ R I++
Sbjct: 410 RAEAEEELINLVNKVYK--RGGKLLIPVMA--VGRGQEILVVLNEALRSGKIPEIPIYVD 465
Query: 274 RSLAKYTGIAKQLGLIKMKGSRVLRSPNAVSKVLKEVSQARENYLLI-VTGH-------- 324
+ + T + + +K R ++LK+ E + VT H
Sbjct: 466 GMVYEVTAVYTNYPELLVKPIR--------DRILKQGENPFEGPTTVYVTDHYKRDEAMY 517
Query: 325 QGEPGAILTR--MANG-------ELYDIGPRDTVVFSAGVIPNPL-NVAQRYALETKLRM 374
+P IL+ M NG + PR+ + F + P L Q E +L M
Sbjct: 518 SDKPAIILSTSGMMNGGPIVEYFKYLADDPRNALAFVSYQAPGTLGRRLQSGEREIELEM 577
Query: 375 K-GVRMIK-NLHV------SGHASKEDHRYLIRMLNPE--YIVPAHGEFRMLTHYAELAE 424
G+R IK N+ + +GH+++ + +R LNP+ IV HGE + A +
Sbjct: 578 DGGIRRIKVNMEIVSIEGFTGHSTRGELLSFLRRLNPKPRNIVLNHGEPSAIAALAHTVK 637
Query: 425 EEGYMIGKEVFISRNGHVVEIPGSLEG 451
+G E + ++E P +LEG
Sbjct: 638 TGWSKLGFE-----SPPIIEAPENLEG 659
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162413907
Number of Sequences: 2977
Number of extensions: 6681787
Number of successful extensions: 17167
Number of sequences better than 1.0e-10: 24
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 17053
Number of HSP's gapped (non-prelim): 24
length of query: 451
length of database: 189,106,746
effective HSP length: 58
effective length of query: 393
effective length of database: 154,394,500
effective search space: 60677038500
effective search space used: 60677038500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)