BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1753 (PAB1753) DE:Hypothetical protein
         (205 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75139 hypothetical protein PAB1753 - Pyrococcus abyssi (st...   396  e-109
sp|P20296|YORA_PYRWO HYPOTHETICAL 24.7 KD PROTEIN IN GAPDH 5'REG...   131  9e-30

>pir||B75139 hypothetical protein PAB1753 - Pyrococcus abyssi (strain Orsay)
           >gi|5458338|emb|CAB49827.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 205
           
 Score =  396 bits (1006), Expect = e-109
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MNKLDLKEYKWDLLSLYFILFALSAKVATLIVGEVGVEIKSMFEFAKYIILPLLLVIILH 60
           MNKLDLKEYKWDLLSLYFILFALSAKVATLIVGEVGVEIKSMFEFAKYIILPLLLVIILH
Sbjct: 1   MNKLDLKEYKWDLLSLYFILFALSAKVATLIVGEVGVEIKSMFEFAKYIILPLLLVIILH 60

Query: 61  EGMHVLVLKLLGAEIKVGISSITKLDVSPYIATPSKIRARDYVKVSLAPVVLSIIFLALA 120
           EGMHVLVLKLLGAEIKVGISSITKLDVSPYIATPSKIRARDYVKVSLAPVVLSIIFLALA
Sbjct: 61  EGMHVLVLKLLGAEIKVGISSITKLDVSPYIATPSKIRARDYVKVSLAPVVLSIIFLALA 120

Query: 121 KIYSSFFWGFAFLLNTAGLSGDILVALSLAKMPREALVWDEGTVMVSSHEFPRPYPKLVS 180
           KIYSSFFWGFAFLLNTAGLSGDILVALSLAKMPREALVWDEGTVMVSSHEFPRPYPKLVS
Sbjct: 121 KIYSSFFWGFAFLLNTAGLSGDILVALSLAKMPREALVWDEGTVMVSSHEFPRPYPKLVS 180

Query: 181 YILRGIIAVFLIILIANTKFVVVRD 205
           YILRGIIAVFLIILIANTKFVVVRD
Sbjct: 181 YILRGIIAVFLIILIANTKFVVVRD 205


>sp|P20296|YORA_PYRWO HYPOTHETICAL 24.7 KD PROTEIN IN GAPDH 5'REGION (ORF A)
           >gi|76327|pir||QQQYAW hypothetical protein A -
           Pyrococcus woesei
           Length = 222
           
 Score =  131 bits (325), Expect = 9e-30
 Identities = 70/190 (36%), Positives = 116/190 (60%), Gaps = 4/190 (2%)

Query: 9   YKWDLLSLYFILFALSAKV---ATLIVGEVGVEIKSMFEFAKYIILPLLLVIILHEGMHV 65
           Y++DL      L ALS  +   A+L V  V + + S  +   Y++LPL+LV+ILHEG+H 
Sbjct: 8   YEFDLCRYSKDLTALSLGLLIGASLTVRWVSLSMSSSRDLLHYLVLPLILVVILHEGLHA 67

Query: 66  LVLKLLGAEIKVGISSITKLDVSPYIATPSKIRARDYVKVSLAPVVLSIIFLALAKIYSS 125
           L  KL GA+  +G+ +   + ++ Y+   + +  +    +++AP+++SI+    + +  S
Sbjct: 68  LTAKLSGAKTSLGVLTKYGIILAVYVGINTPLPVKKIRYITIAPIIISIVAFFFSWVTYS 127

Query: 126 FFWGFAFLLNTAGLSGDILVALSLAKMPREALVWDEGTVMVSSHEFPRPYPKLVSYILRG 185
            FW   ++ NT G+ GD++V L L+KMP +A+V DEGT+M S+ EFP PYP   S ++ G
Sbjct: 128 PFWAILYIFNTTGIVGDLIVFLVLSKMPSDAIVVDEGTIMKSNAEFPEPYPSWFSKLIIG 187

Query: 186 I-IAVFLIIL 194
           + + VFL IL
Sbjct: 188 LAVLVFLYIL 197


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.144    0.413 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65361532
Number of Sequences: 2977
Number of extensions: 2362143
Number of successful extensions: 9851
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9849
Number of HSP's gapped (non-prelim): 2
length of query: 205
length of database: 189,106,746
effective HSP length: 53
effective length of query: 152
effective length of database: 157,386,935
effective search space: 23922814120
effective search space used: 23922814120
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 163 (67.9 bits)