BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1758 (PAB1758) DE:Hypothetical protein
         (299 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75138 hypothetical protein PAB1758 - Pyrococcus abyssi (st...   588  e-167
pir||A71102 hypothetical protein PH1076 - Pyrococcus horikoshii ...   363  2e-99

>pir||D75138 hypothetical protein PAB1758 - Pyrococcus abyssi (strain Orsay)
           >gi|5458332|emb|CAB49821.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 299
           
 Score =  588 bits (1499), Expect = e-167
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 1   MGVSRPYFHRFMASFLNADSAEDVLKLSSLVVDDFIKDVSSYFKVGNGNVNFVPLESWDK 60
           MGVSRPYFHRFMASFLNADSAEDVLKLSSLVVDDFIKDVSSYFKVGNGNVNFVPLESWDK
Sbjct: 1   MGVSRPYFHRFMASFLNADSAEDVLKLSSLVVDDFIKDVSSYFKVGNGNVNFVPLESWDK 60

Query: 61  AEGEKIVILPYTEISEDGNVYFLLDDILDAMDNPDLEKLKLISWEMILGKLSYILYSKFK 120
           AEGEKIVILPYTEISEDGNVYFLLDDILDAMDNPDLEKLKLISWEMILGKLSYILYSKFK
Sbjct: 61  AEGEKIVILPYTEISEDGNVYFLLDDILDAMDNPDLEKLKLISWEMILGKLSYILYSKFK 120

Query: 121 DRLKHRSDAVVLANILASSTLIGIDDVKTLLAVLDAKLKTIRFELEGLEGLDEIQFADFN 180
           DRLKHRSDAVVLANILASSTLIGIDDVKTLLAVLDAKLKTIRFELEGLEGLDEIQFADFN
Sbjct: 121 DRLKHRSDAVVLANILASSTLIGIDDVKTLLAVLDAKLKTIRFELEGLEGLDEIQFADFN 180

Query: 181 QQEAMYADAKARVLKASVHFIDAAIINWIALQSLSLAPLLSPGDEIINLIRENLFDGENI 240
           QQEAMYADAKARVLKASVHFIDAAIINWIALQSLSLAPLLSPGDEIINLIRENLFDGENI
Sbjct: 181 QQEAMYADAKARVLKASVHFIDAAIINWIALQSLSLAPLLSPGDEIINLIRENLFDGENI 240

Query: 241 LKNPGEVAENILSFYDVIKVLNKGRTLEITELLDKIMIYRRKLGLDYYPSTQEIGLYII 299
           LKNPGEVAENILSFYDVIKVLNKGRTLEITELLDKIMIYRRKLGLDYYPSTQEIGLYII
Sbjct: 241 LKNPGEVAENILSFYDVIKVLNKGRTLEITELLDKIMIYRRKLGLDYYPSTQEIGLYII 299


>pir||A71102 hypothetical protein PH1076 - Pyrococcus horikoshii
           >gi|3257492|dbj|BAA30175.1| (AP000004) 303aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 303
           
 Score =  363 bits (921), Expect = 2e-99
 Identities = 171/293 (58%), Positives = 239/293 (81%), Gaps = 3/293 (1%)

Query: 4   SRPYFHRFMASFLNADSAEDVLKLSSLVVDDFIKDVSSYFKVGNGNVNFVPLESWDKAEG 63
           SRPYFHRFM  F+N  S  +VLKL+S  VDDF+K++ S F++ +  V F+ ++ WD AEG
Sbjct: 9   SRPYFHRFMVDFINGSSPTEVLKLASNTVDDFVKELISIFELKDYKVKFMAIDDWDHAEG 68

Query: 64  EKIVILPYTEISEDGNVYFLLDDILDAMDNPDLEKLKLISWEMILGKLSYILYSKFKD-- 121
           +K+VILPY+EISEDG +YFL  DIL+AMDNPDLEKLKL+SWEMILG+ SYILY  F++  
Sbjct: 69  DKLVILPYSEISEDGRIYFLSADILEAMDNPDLEKLKLLSWEMILGRTSYILYENFEEVR 128

Query: 122 RLKHRSDAVVLANILASSTLIGIDDVKTLLAVLDAKLKTIRFELEGLEGLDEIQFADFNQ 181
           + + + D ++LAN+LASSTLI I+D++TLLAVLDAKLKTIR ELE LE L+ ++  +F +
Sbjct: 129 KFEFKGDVIILANLLASSTLIRIEDIRTLLAVLDAKLKTIRLELESLEDLEGMEVLNFTE 188

Query: 182 QEAMYADAKARVLKASVHFIDAAIINWIALQSLSLAPLLSPGDEIINLIRENLFDGENIL 241
           +E ++ DA+A+V++ASV FIDAAI++W+A+QSLSLAPLL P +EII +++++LF+ + +L
Sbjct: 189 RELLFNDARAKVIRASVQFIDAAILSWMAMQSLSLAPLLHPEEEIIRIVKKSLFE-DGLL 247

Query: 242 KNPGEVAENILSFYDVIKVLNKGRTLEITELLDKIMIYRRKLGLDYYPSTQEI 294
           + PGE+ + +L FYD++K +N+G+  EI E+ DKIM+YR+KLGLDYYPSTQ+I
Sbjct: 248 EKPGEIFQAVLGFYDLLKAMNRGKGPEIVEIGDKIMMYRQKLGLDYYPSTQDI 300


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.393 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105606069
Number of Sequences: 2977
Number of extensions: 4258875
Number of successful extensions: 11089
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11085
Number of HSP's gapped (non-prelim): 2
length of query: 299
length of database: 189,106,746
effective HSP length: 57
effective length of query: 242
effective length of database: 154,992,987
effective search space: 37508302854
effective search space used: 37508302854
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)