BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1761 (PAB1761) DE:Hypothetical protein
(221 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75137 hypothetical protein PAB1761 - Pyrococcus abyssi (st... 454 e-127
pir||D71102 hypothetical protein PH1079 - Pyrococcus horikoshii ... 399 e-110
sp|Q57749|Y301_METJA HYPOTHETICAL PROTEIN MJ0301 >gi|2128224|pir... 96 5e-19
pir||B71076 hypothetical protein PH0874 - Pyrococcus horikoshii ... 91 9e-18
>pir||F75137 hypothetical protein PAB1761 - Pyrococcus abyssi (strain Orsay)
>gi|5458326|emb|CAB49815.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 221
Score = 454 bits (1156), Expect = e-127
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MTRLIILNDNVPSKGLMNDWGWSVLVEGRKRFLFDADTNPLVLAHNSKALNVNLRNLDFA 60
MTRLIILNDNVPSKGLMNDWGWSVLVEGRKRFLFDADTNPLVLAHNSKALNVNLRNLDFA
Sbjct: 1 MTRLIILNDNVPSKGLMNDWGWSVLVEGRKRFLFDADTNPLVLAHNSKALNVNLRNLDFA 60
Query: 61 VLSHWHYDHYGGFQYIAELNPGIKFYAPIQGLAMAMRWGFQPIAINSAGEIEEGVYTSGV 120
VLSHWHYDHYGGFQYIAELNPGIKFYAPIQGLAMAMRWGFQPIAINSAGEIEEGVYTSGV
Sbjct: 61 VLSHWHYDHYGGFQYIAELNPGIKFYAPIQGLAMAMRWGFQPIAINSAGEIEEGVYTSGV 120
Query: 121 IDGIEQAVGVETSSGLIVIVGCSHPGVDRMVQKVLEASGYKRAYLVIGGFHSPPIQRLRR 180
IDGIEQAVGVETSSGLIVIVGCSHPGVDRMVQKVLEASGYKRAYLVIGGFHSPPIQRLRR
Sbjct: 121 IDGIEQAVGVETSSGLIVIVGCSHPGVDRMVQKVLEASGYKRAYLVIGGFHSPPIQRLRR 180
Query: 181 LAELSELIAPAHCSGEMAKMFVRKNYGERYVEVRTGTILEV 221
LAELSELIAPAHCSGEMAKMFVRKNYGERYVEVRTGTILEV
Sbjct: 181 LAELSELIAPAHCSGEMAKMFVRKNYGERYVEVRTGTILEV 221
>pir||D71102 hypothetical protein PH1079 - Pyrococcus horikoshii
>gi|3257495|dbj|BAA30178.1| (AP000004) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 399 bits (1013), Expect = e-110
Identities = 182/221 (82%), Positives = 208/221 (93%)
Query: 1 MTRLIILNDNVPSKGLMNDWGWSVLVEGRKRFLFDADTNPLVLAHNSKALNVNLRNLDFA 60
M RLI+LNDN PS+GL+NDWGWS+L+EGR+RFLFDADTNPLVLAHNSK LNVNLRNLDFA
Sbjct: 1 MPRLIVLNDNTPSRGLINDWGWSILIEGRERFLFDADTNPLVLAHNSKVLNVNLRNLDFA 60
Query: 61 VLSHWHYDHYGGFQYIAELNPGIKFYAPIQGLAMAMRWGFQPIAINSAGEIEEGVYTSGV 120
VLSHWHYDHYGGF+YIAELNPGIKFYAP QGLA+AMRWGFQPIAIN G+IEE VYTSGV
Sbjct: 61 VLSHWHYDHYGGFEYIAELNPGIKFYAPPQGLALAMRWGFQPIAINFGGKIEEEVYTSGV 120
Query: 121 IDGIEQAVGVETSSGLIVIVGCSHPGVDRMVQKVLEASGYKRAYLVIGGFHSPPIQRLRR 180
IDGIEQA+G+ETSSGL+VIVGCSHPGVDRMV++VL+ SGY++AYLVIGGFHSPPI RLR
Sbjct: 121 IDGIEQAIGLETSSGLVVIVGCSHPGVDRMVEEVLKVSGYEKAYLVIGGFHSPPIHRLRN 180
Query: 181 LAELSELIAPAHCSGEMAKMFVRKNYGERYVEVRTGTILEV 221
LA LSELIAPAHCSG++AK F+++NY E+YV+V+TGTILE+
Sbjct: 181 LARLSELIAPAHCSGDVAKAFIKRNYKEKYVDVKTGTILEI 221
>sp|Q57749|Y301_METJA HYPOTHETICAL PROTEIN MJ0301 >gi|2128224|pir||F64337 hypothetical
protein MJ0301 - Methanococcus jannaschii
>gi|1591024|gb|AAB98288.1| (U67485) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 294
Score = 95.6 bits (234), Expect = 5e-19
Identities = 75/249 (30%), Positives = 112/249 (44%), Gaps = 57/249 (22%)
Query: 29 RKRFLFDADTNPLVLAHNSKALNVNLRNLDFAVLSHWHYDHYGG-FQYIAELNPGIKFYA 87
+KR LFD T + N K LN+N +++D +LSH H+DH GG F + E+N I +A
Sbjct: 45 KKRILFDTATYAEPILFNMKLLNINPKSIDMIILSHNHFDHTGGLFGIMKEINKEIPIFA 104
Query: 88 ------------PIQGLAMAM-------------RWGFQ--PI----AINSAGEIEE--- 113
P LA + RW PI I + GEIE+
Sbjct: 105 HPNIFKVSFATEPEFMLAGTLNKTLKEDIEKLGGRWVLSRDPIRLMPGIFTLGEIEDEEK 164
Query: 114 ---------GVYTSG----VIDGIEQAVG--VETSSGLIVIVGCSHPGVDRMVQKVLEAS 158
G+Y V+D +E +G + T GLI++ GCSHPG+ MV+K ++ S
Sbjct: 165 INFEKKPTIGLYKLENGRVVLDNVEDEIGLAIVTEKGLIIVSGCSHPGIVSMVKKSIKIS 224
Query: 159 GYKRAYLVIGGFHSPPIQRLRRLAELSEL-------IAPAHCSGEMAKMFVRKNYGERYV 211
G + Y VIGGFH R ++ + L I HC+G A+ + + E +
Sbjct: 225 GINKVYAVIGGFHLIDADNERIVSTIKALKKLGVKKICTGHCTGFKAENMFMEEFKEDFE 284
Query: 212 EVRTGTILE 220
+ G I++
Sbjct: 285 RLHAGKIIK 293
>pir||B71076 hypothetical protein PH0874 - Pyrococcus horikoshii
>gi|3257285|dbj|BAA29968.1| (AP000004) 280aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 280
Score = 91.3 bits (223), Expect = 9e-18
Identities = 74/252 (29%), Positives = 114/252 (44%), Gaps = 55/252 (21%)
Query: 24 VLVEGRKRFLFDADTNPLVLAHNSKALNVNLRNLDFAVLSHWHYDHYGGFQYIA-ELNPG 82
V VEG+K LFD + + N K LN+N R++D VLSH H+DH GG I E+N
Sbjct: 29 VEVEGKK-ILFDTASYAEPILFNMKLLNLNPRDIDMIVLSHNHFDHTGGLLGILREINRK 87
Query: 83 IKFYA--PIQGLAMAMRWGFQPIAINSAGEIEE-----------------GVYTSGVI-- 121
+ +A I ++ A+ F E E GV+T G I
Sbjct: 88 VPIFAHPEIFKVSFALEPEFMYAGTPRLKEEAEKLGGIWILTRDPITLMPGVFTLGEIKE 147
Query: 122 -----------------------DGIEQAVG--VETSSGLIVIVGCSHPGVDRMVQKVLE 156
D +E +G + T GL+V+ GC+HPG+ MV+K ++
Sbjct: 148 EEKVEFEKGSTGLFKIEDGRVIEDKVEDEIGLAINTRKGLVVLAGCAHPGIVSMVKKAIK 207
Query: 157 ASGYKRAYLVIGGFH--SPPIQRLRRLAE-LSEL----IAPAHCSGEMAKMFVRKNYGER 209
SG + Y V+GGFH + R+ + E EL + HC+G A+ + G+R
Sbjct: 208 LSGNDKVYAVLGGFHLINAEDSRIEKTVEAFKELEVKKVYAGHCTGLKAESRFAQELGDR 267
Query: 210 YVEVRTGTILEV 221
+ ++ +G I+E+
Sbjct: 268 FEKLHSGKIIEI 279
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.424
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81028196
Number of Sequences: 2977
Number of extensions: 3195288
Number of successful extensions: 6859
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6854
Number of HSP's gapped (non-prelim): 6
length of query: 221
length of database: 189,106,746
effective HSP length: 51
effective length of query: 170
effective length of database: 158,583,909
effective search space: 26959264530
effective search space used: 26959264530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)