BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1763 (PAB1763) DE:Hypothetical protein
(196 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75137 hypothetical protein PAB1763 - Pyrococcus abyssi (st... 405 e-112
pir||E75214 NADH oxidase (noxc) PAB0163 - Pyrococcus abyssi (str... 251 5e-66
pir||G64472 hypothetical protein MJ1384 - Methanococcus jannasch... 185 2e-46
pir||E72745 hypothetical protein APE0492 - Aeropyrum pernix (str... 167 1e-40
pir||E69021 conserved hypothetical protein MTH116 - Methanobacte... 115 4e-25
gb|AAC25178.1| (AF067649) SagB [Streptococcus pyogenes] 99 3e-20
gb|AAF26925.1|AF210843_22 (AF210843) nonribosomal peptide synthe... 88 7e-17
gb|AAF62881.1|AF217189_4 (AF217189) EpoB [Sorangium cellulosum] 86 3e-16
gi|11497842 NADH oxidase (noxC) [Archaeoglobus fulgidus] >gi|391... 86 3e-16
emb|CAC11516.1| (AL445064) conserved hypothetical protein [Therm... 82 4e-15
gb|AAF19812.1|AF188287_4 (AF188287) MtaD [Stigmatella aurantiaca] 76 4e-13
>pir||D75137 hypothetical protein PAB1763 - Pyrococcus abyssi (strain Orsay)
>gi|5458324|emb|CAB49813.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 196
Score = 405 bits (1029), Expect = e-112
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MEIKLPRPKTKGNVSLEEAIFKRRSIRKYLSEPISLEELSQILWAAAGVNSWGKRNYPSA 60
MEIKLPRPKTKGNVSLEEAIFKRRSIRKYLSEPISLEELSQILWAAAGVNSWGKRNYPSA
Sbjct: 1 MEIKLPRPKTKGNVSLEEAIFKRRSIRKYLSEPISLEELSQILWAAAGVNSWGKRNYPSA 60
Query: 61 GARYPLEVYAVVGNVEGIKPGIYYYNWREHSLVLVREGDIRKELYRACLEQECVLNAPVS 120
GARYPLEVYAVVGNVEGIKPGIYYYNWREHSLVLVREGDIRKELYRACLEQECVLNAPVS
Sbjct: 61 GARYPLEVYAVVGNVEGIKPGIYYYNWREHSLVLVREGDIRKELYRACLEQECVLNAPVS 120
Query: 121 IVIVAHYERTTSKYGERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRKVLG 180
IVIVAHYERTTSKYGERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRKVLG
Sbjct: 121 IVIVAHYERTTSKYGERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRKVLG 180
Query: 181 VDGDPLYVFPIGKPGE 196
VDGDPLYVFPIGKPGE
Sbjct: 181 VDGDPLYVFPIGKPGE 196
>pir||E75214 NADH oxidase (noxc) PAB0163 - Pyrococcus abyssi (strain Orsay)
>gi|5457673|emb|CAB49164.1| (AJ248283) NADH OXIDASE
(NOXC) [Pyrococcus abyssi]
Length = 233
Score = 251 bits (634), Expect = 5e-66
Identities = 121/193 (62%), Positives = 151/193 (77%), Gaps = 2/193 (1%)
Query: 3 IKLPRPKTKGNVSLEEAIFKRRSIRKYLSEPISLEELSQILWAAAGVNSWGK--RNYPSA 60
IKLP P+ +G +S+EEAI +RRSIR Y EP+++EELSQ+LWAA G+ + R PSA
Sbjct: 40 IKLPEPRLRGEMSVEEAIARRRSIRTYKDEPLTIEELSQLLWAAQGITDERRKFRAAPSA 99
Query: 61 GARYPLEVYAVVGNVEGIKPGIYYYNWREHSLVLVREGDIRKELYRACLEQECVLNAPVS 120
GA YP EVY VVG V G+KPG+Y YN EHSL+LVREG+ ++L A L Q+ V NA ++
Sbjct: 100 GATYPFEVYVVVGKVMGLKPGVYLYNPFEHSLILVREGNFMQDLEEAALNQKWVGNAAIN 159
Query: 121 IVIVAHYERTTSKYGERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRKVLG 180
IV+VA+YERTTS YGERGIRYVH++ GH+GQNIYLQAT+L LGTVAVGAF DD V +LG
Sbjct: 160 IVLVAYYERTTSVYGERGIRYVHMEAGHIGQNIYLQATSLGLGTVAVGAFHDDVVADILG 219
Query: 181 VDGDPLYVFPIGK 193
DG PLY+FP+G+
Sbjct: 220 TDGHPLYIFPVGR 232
>pir||G64472 hypothetical protein MJ1384 - Methanococcus jannaschii
>gi|1592030|gb|AAB99394.1| (U67578) NADH oxidase
[Methanococcus jannaschii]
Length = 198
Score = 185 bits (466), Expect = 2e-46
Identities = 92/194 (47%), Positives = 135/194 (69%), Gaps = 4/194 (2%)
Query: 1 MEIKLPRPKTKGNVSLEEAIFKRRSIRKYLSEPISLEELSQILWAAAGV-NSWGKRNYPS 59
MEI+LP + + LE+ + KRRS+R+Y S P++L ELS IL+AA GV + G + PS
Sbjct: 5 MEIQLPDIE---EIKLEDVLIKRRSVREYCSSPLTLRELSHILFAAYGVTDERGFKTVPS 61
Query: 60 AGARYPLEVYAVVGNVEGIKPGIYYYNWREHSLVLVREGDIRKELYRACLEQECVLNAPV 119
AGA YPLE+Y V +V G++ G+Y Y HS+V + + ++ EL A L+Q + AP+
Sbjct: 62 AGATYPLEIYVNVRDVVGVEEGVYKYIPERHSIVRILDEEVGHELALAALKQMFIAIAPI 121
Query: 120 SIVIVAHYERTTSKYGERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRKVL 179
++I A+YERTT YG+RG RYVH++ GH+ QN+YL AT+L LGTV+VGAF D+E+R++L
Sbjct: 122 VLIIAANYERTTRVYGDRGFRYVHMEVGHVAQNVYLMATSLGLGTVSVGAFYDNEIREIL 181
Query: 180 GVDGDPLYVFPIGK 193
+ PL + P+G+
Sbjct: 182 KIKEYPLLLMPVGR 195
>pir||E72745 hypothetical protein APE0492 - Aeropyrum pernix (strain K1)
>gi|5104141|dbj|BAA79457.1| (AP000059) 280aa long
hypothetical protein [Aeropyrum pernix]
Length = 280
Score = 167 bits (418), Expect = 1e-40
Identities = 94/201 (46%), Positives = 120/201 (58%), Gaps = 8/201 (3%)
Query: 3 IKLPRPKTKGNVSLEEAIFKRRSIRKYLSEPISLEELSQILWAAAGVNS---WG--KRNY 57
+ LP P V + EAI +RRS R + P++L E+S IL+ AG+ WG KR Y
Sbjct: 80 VGLPEPTKVSGVDVLEAIRRRRSRRSFSRRPLTLTEVSTILFHVAGITGLAWWGGPKRPY 139
Query: 58 PSAGARYPLEVYAVVGNVEGIKPGIYYYNWREHSLVLVREGDIRKELYRACLEQECVLNA 117
PSAGA P+E Y VV VEG+KPG+Y+YN H L ++REG + L L Q+ V A
Sbjct: 140 PSAGALQPVEAYLVVERVEGLKPGLYHYNPSGHCLEMLREGKLLGRLADVSLGQDHVAEA 199
Query: 118 PVSIVIVAHYERTTSKYGERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRK 177
++V+ A Y RT SKYG R RYVH D G G+N+YL AL L TVAVGAF DDE+
Sbjct: 200 AAALVLTAVYTRTGSKYGHRSYRYVHWDTGFAGENVYLVCEALGLATVAVGAFYDDEMCG 259
Query: 178 VLGVDGD---PLYVFPIGKPG 195
L +D P+ VFP+G G
Sbjct: 260 FLEIDCPWEMPMLVFPVGARG 280
>pir||E69021 conserved hypothetical protein MTH116 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621155|gb|AAB84622.1| (AE000801) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 247
Score = 115 bits (285), Expect = 4e-25
Identities = 68/189 (35%), Positives = 100/189 (51%), Gaps = 8/189 (4%)
Query: 13 NVSLEEAIFKRRSIRKYLSEPISLEELSQILWAAAGVN----SWGKRNYPSAGARYPLEV 68
+ ++ I RRS R YL P+ L+ELS +LWA G+ RN PSAG R+ E
Sbjct: 58 DANIVTCIRNRRSRRSYLDTPLGLDELSFLLWATQGIRIIAGDTAFRNVPSAGCRHTFET 117
Query: 69 YAVVGNVEGIKPGIYYYNWREHSLVL-VREGDIRKELYRACLEQECVLNAPVSIVIVAHY 127
Y V NVEG+ G+Y Y H L++ R+ + + + A Q N+ V+ +
Sbjct: 118 YLAVFNVEGLDTGLYRYIPSTHQLMVEYRDESLPQRIIEATFNQRFTGNSAVTFIWTTVP 177
Query: 128 ERTTSKYGERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRKVLGVDG---D 184
R +YG R + +D GH+ QN+YL A+ GT AVGA+ + + +VLGVDG
Sbjct: 178 YRMEWRYGLAAHRVILMDAGHVCQNLYLACEAIGAGTCAVGAYDQEYLDEVLGVDGVDEF 237
Query: 185 PLYVFPIGK 193
+Y+ P+GK
Sbjct: 238 AIYLAPVGK 246
>gb|AAC25178.1| (AF067649) SagB [Streptococcus pyogenes]
Length = 316
Score = 99.5 bits (244), Expect = 3e-20
Identities = 62/195 (31%), Positives = 99/195 (49%), Gaps = 18/195 (9%)
Query: 3 IKLPRPKTKGNVSLEEAIFKRRSIRKYLSEPISLEELSQILWAAAGVNSWGK-------- 54
I+LP+P TK + +L I KRRS R++ + L++LS IL+ A GV+S
Sbjct: 109 IRLPKP-TKISTALSTCIIKRRSHRQFSDRQMPLQDLSNILYYACGVSSQASIRDGASDK 167
Query: 55 ---RNYPSAGARYPLEVYAVVGNVEGIKPGIYYYNWREHSLVLVR---EGDIRKELYRAC 108
RN S G YP+ + N+ + G Y Y +H+L R E ++R
Sbjct: 168 ITLRNCASGGGLYPIHLVFYARNISKLIDGFYEYLPYQHALRCYRHSSEENVRDFAEYGA 227
Query: 109 LEQECVLNAPVSIVIVAHYERTTSKYGERGIRYVHLDCGHMGQNIYLQATALNLGTVAVG 168
+ E N + I+ V HY + T KYG + Y ++ G + QNI L ATAL G++ +G
Sbjct: 228 INAE---NCNIIIIYVYHYMKNTRKYGNQATAYAFIESGEIAQNIQLTATALTYGSIDIG 284
Query: 169 AFRDDEVRKVLGVDG 183
+ + ++++L +DG
Sbjct: 285 GYNKEYLQELLDLDG 299
>gb|AAF26925.1|AF210843_22 (AF210843) nonribosomal peptide synthetase [Sorangium cellulosum]
Length = 1410
Score = 88.2 bits (215), Expect = 7e-17
Identities = 55/173 (31%), Positives = 86/173 (48%), Gaps = 7/173 (4%)
Query: 22 KRRSIRKYLSEPISLEELSQILWAAAGVNSWG----KRNYPSAGARYPLEVYAVV--GNV 75
+RRS+R +L PI E + L + V G K YPSAG+ YP++ YA V G +
Sbjct: 1045 RRRSVRTFLEAPIPFVEFGRFLSCLSSVEPDGATLPKFRYPSAGSTYPVQTYAYVKSGRI 1104
Query: 76 EGIKPGIYYYNWREHSLVLVREGDIRKELYRACLEQECVLNAPVSIVIVAHYERTTSKYG 135
EG+ G YYY+ EH L+ + + I + + + A +++ V + S YG
Sbjct: 1105 EGVDEGFYYYHPFEHRLLKLSDHGIERGAH-VRQNFDVFDEAAFNLLFVGRIDAIESLYG 1163
Query: 136 ERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRKVLGVDGDPLYV 188
+ L+ G+M Q + QA + N+G VG F ++VR VL + +YV
Sbjct: 1164 SSSREFCLLEAGYMAQLLMEQAPSCNIGVCPVGQFNFEQVRPVLDLRHSDVYV 1216
>gb|AAF62881.1|AF217189_4 (AF217189) EpoB [Sorangium cellulosum]
Length = 1410
Score = 86.2 bits (210), Expect = 3e-16
Identities = 55/173 (31%), Positives = 84/173 (47%), Gaps = 7/173 (4%)
Query: 22 KRRSIRKYLSEPISLEELSQILWAAAGVNSWG----KRNYPSAGARYPLEVYAVV--GNV 75
+RRS+R +L PI E + L + V G K YPSAG+ YP++ YA G +
Sbjct: 1045 RRRSVRTFLEAPIPFVEFGRFLSCLSSVEPDGAALPKFRYPSAGSTYPVQTYAYAKSGRI 1104
Query: 76 EGIKPGIYYYNWREHSLVLVREGDIRKELYRACLEQECVLNAPVSIVIVAHYERTTSKYG 135
EG+ G YYY+ EH L+ V + I + + + A ++ V + S YG
Sbjct: 1105 EGVDEGFYYYHPFEHRLLKVSDHGIERGAH-VPQNFDVFDEAAFGLLFVGRIDAIESLYG 1163
Query: 136 ERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRKVLGVDGDPLYV 188
+ L+ G+M Q + QA + N+G VG F ++VR VL + +YV
Sbjct: 1164 SLSREFCLLEAGYMAQLLMEQAPSCNIGVCPVGQFDFEQVRPVLDLRHSDVYV 1216
>gi|11497842 NADH oxidase (noxC) [Archaeoglobus fulgidus]
>gi|3915352|sp|O30013|Y226_ARCFU PUTATIVE NADH
DEHYDROGENASE/NAD(P)H NITROREDUCTASE AF0226
>gi|7430214|pir||B69278 NADH oxidase (noxC) homolog -
Archaeoglobus fulgidus >gi|2650415|gb|AAB91006.1|
(AE001090) NADH oxidase (noxC) [Archaeoglobus fulgidus]
Length = 172
Score = 85.8 bits (209), Expect = 3e-16
Identities = 60/181 (33%), Positives = 86/181 (47%), Gaps = 34/181 (18%)
Query: 18 EAIFKRRSIRKYLSEPISLEELSQILWAAAGVNSWGKRNYPSAGARYPLEVYAVVGNVEG 77
+ +F+R SIRK+ + + E L +IL A PSAG
Sbjct: 5 DLLFRRVSIRKFTQDDVDDEILMKILEAGNAA--------PSAG---------------- 40
Query: 78 IKPGIYYYNWREHSLVLVREGDIRKELYRACLEQECVLNAPVSIVIVAHYERTTSKYGER 137
N + V++R + +K L A L+Q + APV IV+ A+Y R+ YGER
Sbjct: 41 --------NLQARDFVVIRNPETKKRLAMAALKQMFIAEAPVVIVVCANYPRSMRVYGER 92
Query: 138 GIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRKVLGVDG--DPLYVFPIGKPG 195
G Y D +NI L TALNLG V VGAF +++V ++L + P+ + PIG P
Sbjct: 93 GRLYAEQDATAAIENILLAVTALNLGAVWVGAFDEEQVSEILELPEYVRPMAIIPIGHPA 152
Query: 196 E 196
E
Sbjct: 153 E 153
>emb|CAC11516.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 319
Score = 82.3 bits (200), Expect = 4e-15
Identities = 55/204 (26%), Positives = 99/204 (47%), Gaps = 12/204 (5%)
Query: 2 EIKLPRPKTKG--NVSLEEAIFKRRSIRKYLSEPISLEELSQILW-AAAGVNSWGKRNYP 58
+IK+P PK G V+L+ + RR+ R + +E + LE+ S ILW A + V +Y
Sbjct: 92 KIKMPIPKNVGLEEVNLKNVLLGRRTTRIFQNESMKLEDFSSILWNALSRVRHVRNLSYE 151
Query: 59 S-----AGARYPLEVYAVVGNVEGIKPGIYYYNWREHSLVLVREGDIRKELYRACLEQEC 113
A + Y + N+ ++ GIY Y+ ++H L ++ GD R+E+ +
Sbjct: 152 DPLDYFASHGTEFDFYVIAYNINHLQNGIYLYDVKDHFLSELKSGDFREEMIHNLWWHQA 211
Query: 114 VLNAPVSIVIVAHYERTTSKY-GERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRD 172
A +I+ V +E+ +Y ER +R + ++ G + Q + +A + G++ A RD
Sbjct: 212 PKTANFTILFVTDFEQYQWRYRHERALRNIFIEAGRIAQRLIFEAERMGFGSLPTPATRD 271
Query: 173 DEVRKVLGVDGDP---LYVFPIGK 193
K+L + + LY +GK
Sbjct: 272 SSFDKMLSLKRNKQFVLYTITVGK 295
>gb|AAF19812.1|AF188287_4 (AF188287) MtaD [Stigmatella aurantiaca]
Length = 3291
Score = 75.7 bits (183), Expect = 4e-13
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 6/180 (3%)
Query: 9 KTKGNVSLEEAIFKRRSIRKYLSEPISLEELSQILWAAAGV----NSWGKRNYPSAGARY 64
K + + + + +R+S + +LSEP+SLE LS++L + + K Y SAG Y
Sbjct: 1051 KPEFDEAFRKRYMERQSAQSFLSEPVSLERLSELLSCLMQIALEDSMMPKYRYASAGGLY 1110
Query: 65 PLEVYAVV--GNVEGIKPGIYYYNWREHSLVLVREGDIRKELYRACLEQECVLNAPVSIV 122
P++VY V G V G+ G YYY+ + H LVL+ A + A S+
Sbjct: 1111 PVQVYLHVKPGRVGGLAGGTYYYHPKRHELVLLTADAAMDRSQHASRNRPVFDAAAFSVF 1170
Query: 123 IVAHYERTTSKYGERGIRYVHLDCGHMGQNIYLQATALNLGTVAVGAFRDDEVRKVLGVD 182
+V YG + L+ G+M Q + A A +G +G + +R L +D
Sbjct: 1171 LVGKLSAIAPLYGSMARDFCMLEAGYMAQLLMSVAPAHKMGLCPIGVMDFEPLRSQLALD 1230
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77172914
Number of Sequences: 2977
Number of extensions: 3093153
Number of successful extensions: 5714
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5689
Number of HSP's gapped (non-prelim): 12
length of query: 196
length of database: 189,106,746
effective HSP length: 52
effective length of query: 144
effective length of database: 157,985,422
effective search space: 22749900768
effective search space used: 22749900768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)