BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1764 (PAB1764) DE:Hypothetical protein
         (112 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75136 hypothetical protein PAB1764 - Pyrococcus abyssi (st...   234  3e-61
pir||H71148 hypothetical protein PH0402 - Pyrococcus horikoshii ...   165  2e-40
gb|AAK42030.1| Conserved hypothetical protein [Sulfolobus solfat...    96  1e-19
pir||H72600 hypothetical protein APE1272 - Aeropyrum pernix (str...    76  1e-13
pir||A72356 conserved hypothetical protein - Thermotoga maritima...    73  8e-13

>pir||H75136 hypothetical protein PAB1764 - Pyrococcus abyssi (strain Orsay)
           >gi|5458320|emb|CAB49809.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 112
           
 Score =  234 bits (590), Expect = 3e-61
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MFKWSEYERWIKQAERNLRSALRDLEGGDYEWASFKAQQAAELAVKALLRGMGSAPIGHS 60
           MFKWSEYERWIKQAERNLRSALRDLEGGDYEWASFKAQQAAELAVKALLRGMGSAPIGHS
Sbjct: 1   MFKWSEYERWIKQAERNLRSALRDLEGGDYEWASFKAQQAAELAVKALLRGMGSAPIGHS 60

Query: 61  ITRLLRNLVGEGIDVPKKLFYIAMKLDRNYMASRYPHVYPEGSPFEYYSEDS 112
           ITRLLRNLVGEGIDVPKKLFYIAMKLDRNYMASRYPHVYPEGSPFEYYSEDS
Sbjct: 61  ITRLLRNLVGEGIDVPKKLFYIAMKLDRNYMASRYPHVYPEGSPFEYYSEDS 112


>pir||H71148 hypothetical protein PH0402 - Pyrococcus horikoshii
           >gi|3256794|dbj|BAA29477.1| (AP000002) 140aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 140
           
 Score =  165 bits (413), Expect = 2e-40
 Identities = 79/112 (70%), Positives = 93/112 (82%), Gaps = 1/112 (0%)

Query: 1   MFKWSEYERWIKQAERNLRSALRDLEGGDYEWASFKAQQAAELAVKALLRGMGSAPIGHS 60
           MFK  EYERWI +A+R L SA  DL+ G YEWASFKAQQAAELAVKA+LRG+G APIGHS
Sbjct: 3   MFKRREYERWIVEAKRTLSSAYSDLKEGYYEWASFKAQQAAELAVKAILRGLGFAPIGHS 62

Query: 61  ITRLLRNLVGE-GIDVPKKLFYIAMKLDRNYMASRYPHVYPEGSPFEYYSED 111
           ITRLL++L G   +D+P+++ Y AM+LDRNY+A RYP  YPEGSPFEYYSED
Sbjct: 63  ITRLLKDLSGSLNLDIPREILYFAMELDRNYIAPRYPDAYPEGSPFEYYSED 114


>gb|AAK42030.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 130
           
 Score = 96.0 bits (235), Expect = 1e-19
 Identities = 50/107 (46%), Positives = 68/107 (62%), Gaps = 3/107 (2%)

Query: 5   SEYERWIKQAERNLRSALRDLEGGDYEWASFKAQQAAELAVKALLRGMGSAPIGHSITRL 64
           S Y  W++QAERNL+SA  + E G YE   ++AQQ AE +VK+LL        GHSIT L
Sbjct: 3   SRYYDWLRQAERNLKSAELNFENGIYEETCYEAQQVAEKSVKSLLSYFHKEMRGHSITFL 62

Query: 65  LRNLVGEGIDVPKKLFYIAMKLDRNYMASRYPHVYPEGSPFEYYSED 111
           L+      I +P  +   A +LD+NY+ SRYP VY +G+P +YYS+D
Sbjct: 63  LQ---FSSISIPDWILKCAQELDKNYIPSRYPDVYDQGAPLDYYSKD 106


>pir||H72600 hypothetical protein APE1272 - Aeropyrum pernix (strain K1)
           >gi|5104948|dbj|BAA80262.1| (AP000061) 142aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 142
           
 Score = 76.1 bits (184), Expect = 1e-13
 Identities = 44/110 (40%), Positives = 61/110 (55%), Gaps = 2/110 (1%)

Query: 1   MFKWSEYERWIKQAERNLRSALRDLEGGDYEWASFKAQQAAELAVKALLRGMGSAPIGHS 60
           +F   E  RW++QA+  L S   D EGG Y WA FKA QAAE ++KA+LR  G    GH 
Sbjct: 5   VFDCEEAVRWLRQAKHTLESIRVDYEGGFYSWACFKANQAAEYSIKAVLRAAGLESFGHD 64

Query: 61  ITRLLRNLVGEGIDVPKKLFYIAMKLDRNYMASRYPHVYPEG-SPFEYYS 109
           +  L R        + +    IA+ L++ Y+  RYP  +P G +PFE Y+
Sbjct: 65  LMALWRRARSLCQPLQEMEECIAV-LNKLYLPPRYPDAWPGGAAPFENYT 113


>pir||A72356 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981133|gb|AAD35698.1|AE001735_11 (AE001735)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 123
           
 Score = 73.4 bits (177), Expect = 8e-13
 Identities = 40/96 (41%), Positives = 57/96 (58%), Gaps = 1/96 (1%)

Query: 14  AERNLRSALRDLEGGDYEWASFKAQQAAELAVKALLRGMGSAPIGHSITRLLRNLVGEGI 73
           A+ +L  A  DLE G Y WA F +QQAAE AVKA+ + MG+   G+S+   L  L     
Sbjct: 4   AKDDLEHAKHDLEHGFYNWACFSSQQAAEKAVKAVFQRMGAQAWGYSVPDFLGEL-SSRF 62

Query: 74  DVPKKLFYIAMKLDRNYMASRYPHVYPEGSPFEYYS 109
           ++P++L   A++LD+  + +RYP   P GSP   YS
Sbjct: 63  EIPEELMDHALELDKACIPTRYPDALPSGSPRNRYS 98


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43017493
Number of Sequences: 2977
Number of extensions: 1447211
Number of successful extensions: 3687
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3681
Number of HSP's gapped (non-prelim): 5
length of query: 112
length of database: 189,106,746
effective HSP length: 51
effective length of query: 61
effective length of database: 158,583,909
effective search space: 9673618449
effective search space used: 9673618449
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)