BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1767 (PAB1767) DE:Hypothetical protein
         (601 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75136 hypothetical protein PAB1767 - Pyrococcus abyssi (st...  1208  0.0

>pir||B75136 hypothetical protein PAB1767 - Pyrococcus abyssi (strain Orsay)
           >gi|5458314|emb|CAB49803.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 601
           
 Score = 1208 bits (3090), Expect = 0.0
 Identities = 601/601 (100%), Positives = 601/601 (100%)

Query: 1   MEAYLARIFGLFFYALLAQGLSFFVPPVSILKHPLSAFLLSNCGNENLISFLANWRNCMK 60
           MEAYLARIFGLFFYALLAQGLSFFVPPVSILKHPLSAFLLSNCGNENLISFLANWRNCMK
Sbjct: 1   MEAYLARIFGLFFYALLAQGLSFFVPPVSILKHPLSAFLLSNCGNENLISFLANWRNCMK 60

Query: 61  KVLSILLIALLITISGCIKIAPKATSTLNEDNLPISMKLSERVYVEIDPRVELVEIIYRI 120
           KVLSILLIALLITISGCIKIAPKATSTLNEDNLPISMKLSERVYVEIDPRVELVEIIYRI
Sbjct: 61  KVLSILLIALLITISGCIKIAPKATSTLNEDNLPISMKLSERVYVEIDPRVELVEIIYRI 120

Query: 121 SGVEWYRENVDPSRIGISKEDYPYIRDIDLYFEKYRDLKAVKMVSSMVRMGLTYDAIPKF 180
           SGVEWYRENVDPSRIGISKEDYPYIRDIDLYFEKYRDLKAVKMVSSMVRMGLTYDAIPKF
Sbjct: 121 SGVEWYRENVDPSRIGISKEDYPYIRDIDLYFEKYRDLKAVKMVSSMVRMGLTYDAIPKF 180

Query: 181 ALHLNMKNFSKAKDWEDMLKSRVNLDMKKLDEFAEAIAEFANKTNFWKFYNEHGEFYNST 240
           ALHLNMKNFSKAKDWEDMLKSRVNLDMKKLDEFAEAIAEFANKTNFWKFYNEHGEFYNST
Sbjct: 181 ALHLNMKNFSKAKDWEDMLKSRVNLDMKKLDEFAEAIAEFANKTNFWKFYNEHGEFYNST 240

Query: 241 LQEFVTENKGIAELVQLEEEFFGERASSWHIILQPTFCCHGYAYYFQTNDGKHVYAFLGI 300
           LQEFVTENKGIAELVQLEEEFFGERASSWHIILQPTFCCHGYAYYFQTNDGKHVYAFLGI
Sbjct: 241 LQEFVTENKGIAELVQLEEEFFGERASSWHIILQPTFCCHGYAYYFQTNDGKHVYAFLGI 300

Query: 301 ESVVEGIPLVKATSNSSSFLAHEFAHSFVNPAVDKHYNLFAPYASLYEPVSRKLSSMAYP 360
           ESVVEGIPLVKATSNSSSFLAHEFAHSFVNPAVDKHYNLFAPYASLYEPVSRKLSSMAYP
Sbjct: 301 ESVVEGIPLVKATSNSSSFLAHEFAHSFVNPAVDKHYNLFAPYASLYEPVSRKLSSMAYP 360

Query: 361 NFRVMLRETFVRAFEVYYLNVTGGEDIAKMKLNQESKVFYFIGDVYSAYVNEYIKHRDKY 420
           NFRVMLRETFVRAFEVYYLNVTGGEDIAKMKLNQESKVFYFIGDVYSAYVNEYIKHRDKY
Sbjct: 361 NFRVMLRETFVRAFEVYYLNVTGGEDIAKMKLNQESKVFYFIGDVYSAYVNEYIKHRDKY 420

Query: 421 RTFEDFRPELARVIAEVYEKTNGGKNVVLPLTVRDFMESAKIGGAIIAYSDSPRAKRLAE 480
           RTFEDFRPELARVIAEVYEKTNGGKNVVLPLTVRDFMESAKIGGAIIAYSDSPRAKRLAE
Sbjct: 421 RTFEDFRPELARVIAEVYEKTNGGKNVVLPLTVRDFMESAKIGGAIIAYSDSPRAKRLAE 480

Query: 481 IMYTSLKEYSIQVSLKKVSAVKEDDLKRNLVLVLFSNETLLSELQNNALVVVNGTRVYSK 540
           IMYTSLKEYSIQVSLKKVSAVKEDDLKRNLVLVLFSNETLLSELQNNALVVVNGTRVYSK
Sbjct: 481 IMYTSLKEYSIQVSLKKVSAVKEDDLKRNLVLVLFSNETLLSELQNNALVVVNGTRVYSK 540

Query: 541 RTGKSYSGSLRVLEVIKNPWNPRSVIMLVIGTDDSAFNKIHAYINLSYSIRDSSDNLLES 600
           RTGKSYSGSLRVLEVIKNPWNPRSVIMLVIGTDDSAFNKIHAYINLSYSIRDSSDNLLES
Sbjct: 541 RTGKSYSGSLRVLEVIKNPWNPRSVIMLVIGTDDSAFNKIHAYINLSYSIRDSSDNLLES 600

Query: 601 W 601
           W
Sbjct: 601 W 601


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.137    0.395 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212652982
Number of Sequences: 2977
Number of extensions: 8842625
Number of successful extensions: 21943
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21942
Number of HSP's gapped (non-prelim): 1
length of query: 601
length of database: 189,106,746
effective HSP length: 58
effective length of query: 543
effective length of database: 154,394,500
effective search space: 83836213500
effective search space used: 83836213500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 168 (69.9 bits)