BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1769 (mmdA) DE:methylmalonyl-CoA decarboxylase, subunit
alpha (mmdA)
(522 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75135 methylmalonyl-coa decarboxylase, chain A lpha (mmda)... 1051 0.0
pir||D71074 probable methylmalonyl-CoA decarboxylase alpha chain... 1023 0.0
gi|11499799 methylmalonyl-CoA decarboxylase, subunit alpha (mmdA... 773 0.0
pir||C72344 propionyl-CoA carboxylase, beta subunit - Thermotoga... 698 0.0
dbj|BAB06676.1| (AP001517) methylmalonyl-CoA decarboxylase alpha... 651 0.0
pir||T44982 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) alpha ... 639 0.0
gb|AAK42602.1| Propionyl-CoA carboxylase beta subunit (ppcB) [Su... 624 e-178
gb|AAG19817.1| (AE005066) methylmalonyl-CoA decarboxylase, subun... 621 e-177
pir||T43828 propionyl-CoA carboxylase (EC 6.4.1.3) [validated] -... 616 e-175
pir||T44289 probable methylmalonyl-CoA decarboxylase (EC 4.1.1.4... 612 e-174
pir||H75410 probable propionyl-CoA carboxylase, alpha subunit - ... 609 e-173
pir||A49094 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) alpha ... 607 e-173
pir||D71667 propionyl-COA carboxylase beta chain precursor (pccB... 600 e-170
sp|P53003|PCCB_SACER PROPIONYL-COA CARBOXYLASE BETA CHAIN (PCCAS... 596 e-169
pir||T42208 propionyl-CoA carboxylase complex B chain - Streptom... 596 e-169
pir||T29065 probable methylmalonyl-CoA decarboxylase (EC 4.1.1.4... 583 e-165
sp|P79384|PCCB_PIG PROPIONYL-COA CARBOXYLASE BETA CHAIN, MITOCHO... 562 e-159
pir||T45009 propionyl-CoA carboxylase (EC 6.4.1.3) beta chain pr... 558 e-158
pir||T16428 propionyl-CoA carboxylase (EC 6.4.1.3) beta chain F5... 557 e-157
gi|4557044 propionyl Coenzyme A carboxylase, beta polypeptide [H... 555 e-157
gb|AAD13544.1| (AF080235) decarboxylase homolog [Streptomyces cy... 554 e-157
pir||A53020 propionyl-CoA carboxylase (EC 6.4.1.3) beta chain pr... 553 e-156
pir||A70980 probable accD5 protein - Mycobacterium tuberculosis ... 552 e-156
sp|P54541|PCCB_BACSU PUTATIVE PROPIONYL-COA CARBOXYLASE BETA CHA... 551 e-156
gi|8393913 propionyl Coenzyme A carboxylase, beta polypeptide [R... 550 e-155
sp|P53002|PCCB_MYCLE PROBABLE PROPIONYL-COA CARBOXYLASE BETA CHA... 550 e-155
dbj|BAA33850.1| (AB018531) dtsR2 [Corynebacterium glutamicum] 538 e-152
pir||JC4991 detergent sensitivity rescuer - Corynebacterium glut... 501 e-141
pir||A48665 methylmalonyl-CoA carboxyltransferase (EC 2.1.3.1) 1... 450 e-125
pir||C70887 probable Propionyl-CoA carboxylase - Mycobacterium t... 439 e-122
sp|Q10506|PCCB_MYCTU PROBABLE PROPIONYL-COA CARBOXYLASE BETA CHA... 351 1e-95
pir||T44709 acetyl/propionyl CoA carboxylase [imported] - Mycoba... 344 2e-93
pir||B69893 propionyl-CoA carboxylase homolog yngE - Bacillus su... 343 3e-93
dbj|BAB04855.1| (AP001511) propionyl-CoA carboxylase [Bacillus h... 341 1e-92
gb|AAG19127.1| (AE005010) propionyl-CoA carboxylase homolog; Yng... 332 8e-90
gb|AAF32341.1|AF218939_9 (AF218939) b-propionyl-CoA carboxylase ... 329 4e-89
sp|Q06101|PCCB_RHOER PROPIONYL-COA CARBOXYLASE BETA CHAIN (PCCAS... 327 2e-88
sp|P34385|YLP5_CAEEL HYPOTHETICAL 66.5 KD PROTEIN F02A9.5 IN CHR... 287 2e-76
emb|CAB87213.1| (AL163641) acetyl/propionyl CoA carboxylase, bet... 283 4e-75
gb|AAF35258.1|AF059510_1 (AF059510) 3-methylcrotonyl-CoA carboxy... 277 2e-73
gb|AAG17227.1|AF217984_1 (AF217984) unknown [Homo sapiens] 277 2e-73
pir||F70550 probable accD1 protein - Mycobacterium tuberculosis ... 276 4e-73
gi|11545863 non-biotin containing subunit of 3-methylcrotonyl-Co... 270 4e-71
gb|AAC38045.1| (U94697) propionyl-CoA carboxylase beta chain hom... 269 5e-71
gb|AAF57388.1| (AE003789) CG3267 gene product [Drosophila melano... 266 3e-70
pir||F75382 probable propionyl-CoA carboxylase, beta subunit - D... 264 2e-69
emb|CAA68941.1| (Y07660) B subunit of propionyl-CoA carboxylase ... 259 4e-68
pir||C83395 probable acyl-CoA carboxyltransferase beta chain PA2... 255 8e-67
pir||T05433 hypothetical protein F28A23.210 - Arabidopsis thalia... 253 3e-66
pir||D70719 probable propionyl-CoA carboxylase - Mycobacterium t... 238 9e-62
emb|CAB95891.1| (AL359988) putative acetyl/propionyl CoA carboxy... 238 2e-61
dbj|BAB16296.1| (AB039884) acetyl-CoA carboxylase carboxyltransf... 238 2e-61
pir||C83284 probable biotin-dependent carboxylase PA2888 [import... 235 1e-60
pir||B83471 probable pyruvate carboxylase PA1400 [imported] - Ps... 224 2e-57
pir||C75585 carboxylase - Deinococcus radiodurans (strain R1) >g... 215 1e-54
pir||T45098 probable propionyl-coA carboxylase beta chain [impor... 197 3e-49
gb|AAC69174.1| (AF030576) methylmalonyl-CoA decarboxylase alpha ... 194 2e-48
gb|AAA60036.1| (M13573) propionyl-CoA carboxylase beta chain (EC... 185 1e-45
emb|CAA74219.1| (Y13917) yngE [Bacillus subtilis] 169 9e-41
sp|Q06700|GCDA_ACIFE GLUTACONYL-COA DECARBOXYLASE A SUBUNIT (CAR... 128 2e-28
emb|CAC00930.1| (AL390935) probable propionyl-coa carboxylase be... 108 1e-22
emb|CAA19885.1| (AL031032) putative protein (fragment) [Arabidop... 94 4e-18
pir||H81687 acetyl-coenzyme A carboxylase carboxyl transferase, ... 83 9e-15
gb|AAB97629.1| (AF121266) malonate decarboxylase beta subunit [A... 80 8e-14
pir||C72124 acetyl-coenzyme A carboxylase carboxyl transferase, ... 80 8e-14
emb|CAC00894.1| (AL390935) probable propionyl-coa carboxylase be... 79 1e-13
sp|P08193|ACCD_ECOLI ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRAN... 78 3e-13
pir||B71534 probable accoa carboxylase/transferase beta - Chlamy... 77 5e-13
pir||E71875 acetyl-coenzyme A carboxylase chain B - Helicobacter... 76 9e-13
pir||F64638 acetyl-CoA carboxylase beta subunit - Helicobacter p... 76 1e-12
gb|AAG24832.1| (AF294436) acetyl-CoA carboxylase beta subunit [B... 76 1e-12
pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human >gi|4523... 75 3e-12
gi|4501855 acetyl-Coenzyme A carboxylase beta [Homo sapiens] >gi... 75 3e-12
pir||A75422 acetyl-CoA carboxylase carboxyl transferase, beta su... 74 3e-12
pir||C53376 hypothetical protein (iaaH 3' region) - Pseudomonas ... 74 5e-12
sp|P48937|ACCD_BRANA ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRAN... 74 5e-12
pir||G81429 acetyl-CoA carboxylase (EC 6.4.1.2) carboxyltransfer... 73 6e-12
gi|11497537 acetyl-coA carboxylase beta subunit [Spinacia olerac... 73 1e-11
pir||T07012 acetyl-CoA carboxylase (EC 6.4.1.2) - potato chlorop... 72 2e-11
gi|11465966 acetyl-CoA carboxylase beta subunit [Nicotiana tabac... 71 3e-11
gb|AAA23965.1| (M68935) acetyl-CoA carboxylase beta subunit [Esc... 71 3e-11
gi|11466711 ORF316 [Marchantia polymorpha] >gi|141629|sp|P12217|... 71 4e-11
pir||I41212 folC expression protein - Escherichia coli >gi|14600... 70 5e-11
gi|7525042 carboxytransferase beta subunit [Arabidopsis thaliana... 69 9e-11
pir||T32413 probable acetyl-CoA carboxylase (EC 6.4.1.2) W09B6.1... 69 9e-11
>pir||H75135 methylmalonyl-coa decarboxylase, chain A lpha (mmda) PAB1769 -
Pyrococcus abyssi (strain Orsay)
>gi|5458312|emb|CAB49801.1| (AJ248285) methylmalonyl-CoA
decarboxylase, subunit a lpha (mmdA) [Pyrococcus abyssi]
Length = 522
Score = 1051 bits (2688), Expect = 0.0
Identities = 522/522 (100%), Positives = 522/522 (100%)
Query: 1 MGMMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHR 60
MGMMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHR
Sbjct: 1 MGMMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHR 60
Query: 61 ATEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEA 120
ATEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEA
Sbjct: 61 ATEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEA 120
Query: 121 GAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIG 180
GAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIG
Sbjct: 121 GAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIG 180
Query: 181 DFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL 240
DFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL
Sbjct: 181 DFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL 240
Query: 241 IKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENG 300
IKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENG
Sbjct: 241 IKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENG 300
Query: 301 NPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFN 360
NPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFN
Sbjct: 301 NPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFN 360
Query: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSK 420
IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSK
Sbjct: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSK 420
Query: 421 HLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAA 480
HLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAA
Sbjct: 421 HLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAA 480
Query: 481 SRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
SRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL
Sbjct: 481 SRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
>pir||D71074 probable methylmalonyl-CoA decarboxylase alpha chain - Pyrococcus
horikoshii >gi|3257707|dbj|BAA30390.1| (AP000005) 522aa
long hypothetical methylmalonyl-CoA decarboxylase alpha
chain [Pyrococcus horikoshii]
Length = 522
Score = 1023 bits (2617), Expect = 0.0
Identities = 503/522 (96%), Positives = 518/522 (98%)
Query: 1 MGMMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHR 60
MGM+EKVE+L++R+KKILQMGGEEAIKKQH+KGKLTARER+ELLLDPGSFVEIGMFVKHR
Sbjct: 1 MGMIEKVEELHERKKKILQMGGEEAIKKQHEKGKLTARERLELLLDPGSFVEIGMFVKHR 60
Query: 61 ATEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEA 120
ATEFGMDKR+LPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEA
Sbjct: 61 ATEFGMDKRELPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEA 120
Query: 121 GAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIG 180
GAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIG
Sbjct: 121 GAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIG 180
Query: 181 DFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL 240
DFILMVDNPSTFMFITGPQVVKAVTGV+VTPVQLGGA+VHAQ+SGQAHLIGKSDEEVI L
Sbjct: 181 DFILMVDNPSTFMFITGPQVVKAVTGVEVTPVQLGGAMVHAQRSGQAHLIGKSDEEVIML 240
Query: 241 IKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENG 300
IK+LLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNK YDVRQVIY IVDRDENG
Sbjct: 241 IKKLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKGYDVRQVIYTIVDRDENG 300
Query: 301 NPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFN 360
NPDFLELQPYFAPNAVIGFGRINGQ VGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFN
Sbjct: 301 NPDFLELQPYFAPNAVIGFGRINGQPVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFN 360
Query: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSK 420
IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVT+ILRKAYGGAYLAMGSK
Sbjct: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTIILRKAYGGAYLAMGSK 420
Query: 421 HLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAA 480
HLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFR+QKIQEYREKFANPYVAA
Sbjct: 421 HLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRRQKIQEYREKFANPYVAA 480
Query: 481 SRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
+RGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL
Sbjct: 481 ARGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
>gi|11499799 methylmalonyl-CoA decarboxylase, subunit alpha (mmdA)
[Archaeoglobus fulgidus] >gi|7438114|pir||A69527
methylmalonyl-CoA decarboxylase, subunit alpha (mmdA)
homolog - Archaeoglobus fulgidus
>gi|2648306|gb|AAB89035.1| (AE000952) methylmalonyl-CoA
decarboxylase, subunit alpha (mmdA) [Archaeoglobus
fulgidus]
Length = 516
Score = 773 bits (1974), Expect = 0.0
Identities = 370/518 (71%), Positives = 437/518 (83%), Gaps = 5/518 (0%)
Query: 5 EKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEF 64
E VE+LY +++KI QMGG+E I++QH++GKLTARERIELLLDPGSFVEI FV+ R T+F
Sbjct: 4 ELVEELYGKKEKIRQMGGKERIERQHEQGKLTARERIELLLDPGSFVEINPFVEKRNTDF 63
Query: 65 GMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPV 124
G+DK DLPADGV+TGYGT++GR V V+AQDFTVMGGSLGEMH KI I++ A++ G PV
Sbjct: 64 GLDKMDLPADGVVTGYGTVDGRPVAVFAQDFTVMGGSLGEMHGFKIAYILDFAMKLGIPV 123
Query: 125 IGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFIL 184
+GLNDSGGARIQEGVD+LKGYG+IF NT+ SGV+PQI+ IMGPCAGGAVYSPAIGDFI+
Sbjct: 124 VGLNDSGGARIQEGVDALKGYGDIFYRNTLASGVIPQISVIMGPCAGGAVYSPAIGDFIV 183
Query: 185 MVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRL 244
M NP+ +MFITGPQV+K VTG +V+ LGG HA KSG HL+ + D + + L++RL
Sbjct: 184 MTKNPNCYMFITGPQVIKTVTGEEVSAFDLGGWQAHAMKSGNCHLVAEDDRDAMMLVRRL 243
Query: 245 LSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDF 304
LSYLP NNME PP VK D+P R TPE+YD++PDDP K YDVR VI A+VD N +
Sbjct: 244 LSYLPLNNMEDPPVVKTGDDPVRLTPEIYDVLPDDPQKPYDVRDVITAVVD-----NGEL 298
Query: 305 LELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIV 364
LE+ PY+APNAV+GF RI+G++VGIVANNP H AG LD+DSSDKIARFVRFCDAFNIPI+
Sbjct: 299 LEIHPYYAPNAVVGFARIDGKSVGIVANNPRHFAGCLDVDSSDKIARFVRFCDAFNIPII 358
Query: 365 TFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGA 424
TFVDVPGYLPGV QE GIIRHGAKVLYAY+EATVP+VT+ILRKAYGGAYLAMGSKHLGA
Sbjct: 359 TFVDVPGYLPGVQQEYGGIIRHGAKVLYAYSEATVPLVTIILRKAYGGAYLAMGSKHLGA 418
Query: 425 DFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGY 484
D V+A+PTAEIAVMGPEGAA I+FRKEI AE+P+ R++KI+EYREKFANPY AA+RGY
Sbjct: 419 DIVYAYPTAEIAVMGPEGAAEIVFRKEIKAAEDPKAMREEKIREYREKFANPYRAAARGY 478
Query: 485 IDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
IDD+IDP TR K+V AL LE+KR KLPPKKHGNIPL
Sbjct: 479 IDDIIDPKYTRVKVVSALRILESKREKLPPKKHGNIPL 516
>pir||C72344 propionyl-CoA carboxylase, beta subunit - Thermotoga maritima
(strain MSB8) >gi|4981240|gb|AAD35798.1|AE001742_13
(AE001742) propionyl-CoA carboxylase, beta subunit
[Thermotoga maritima]
Length = 515
Score = 698 bits (1781), Expect = 0.0
Identities = 349/522 (66%), Positives = 413/522 (78%), Gaps = 7/522 (1%)
Query: 1 MGMMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHR 60
M + +K+E+L + K+I Q GG E ++KQH GKLTA ER+ELLLDPG+FVEI FV+HR
Sbjct: 1 MSLRDKIEELKKIEKEIEQGGGPEKVEKQHRAGKLTAWERLELLLDPGTFVEIDKFVEHR 60
Query: 61 ATEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEA 120
T FG+DK LP DGVITG G INGR V V++QDFTVMGGSLGEMHA KI ++++LAL+
Sbjct: 61 NTYFGLDKVKLPRDGVITGVGEINGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKM 120
Query: 121 GAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIG 180
G PVIG+NDSGGARIQEGVD+L GYGEIF NT+ SGVVPQIT I GPCAGGAVYSPA+
Sbjct: 121 GIPVIGINDSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVYSPALT 180
Query: 181 DFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL 240
DFI+MVD + MFITGP V+KAVTG +++ LGGA+VH QKSG AH + +DE+ + L
Sbjct: 181 DFIVMVDQTAR-MFITGPNVIKAVTGEEISQEDLGGAMVHNQKSGNAHFLADNDEKAMSL 239
Query: 241 IKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENG 300
++ LLSYLPSNN E+PP V+ D ++ DI+PD+PNK YDVR VI +VD E
Sbjct: 240 VRTLLSYLPSNNAEEPP-VEDPDTSLETPEDILDILPDNPNKGYDVRDVIKRVVDHGE-- 296
Query: 301 NPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFN 360
F E+QPYFA N VIGF RI G+TVGIVAN P LAGVLDIDSSDK ARF+RF DAFN
Sbjct: 297 ---FFEVQPYFAKNIVIGFARIQGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAFN 353
Query: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSK 420
IPI+TFVD PGYLPGV QE GIIRHGAK+LYAY+EATVP +TVILRKAYGGAY+AMGSK
Sbjct: 354 IPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSK 413
Query: 421 HLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAA 480
HLGAD V AWP+AEIAVMGPEGAANIIF++EI + NPEE R++ I+EY+++FANPY+AA
Sbjct: 414 HLGADMVLAWPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAA 473
Query: 481 SRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
SRGY+D VIDP ETR I+ ALE E K P KKHGNIPL
Sbjct: 474 SRGYVDMVIDPRETRKYIMRALEVCETKVEYRPKKKHGNIPL 515
>dbj|BAB06676.1| (AP001517) methylmalonyl-CoA decarboxylase alpha subunit [Bacillus
halodurans]
Length = 516
Score = 651 bits (1662), Expect = 0.0
Identities = 325/527 (61%), Positives = 400/527 (75%), Gaps = 16/527 (3%)
Query: 1 MGMMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHR 60
M M +++ ++ RR K+ GG + I QHD+GKLTARERI+LLLD G+FVE+ F++HR
Sbjct: 1 MDMFDRIHEMEVRRDKVKLGGGSKRIDAQHDRGKLTARERIDLLLDEGTFVELNPFIEHR 60
Query: 61 ATEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEA 120
+FG + P +GV+TGYG ++GRLVF++AQDFTV GG+LGEMHA KI ++M+LA E
Sbjct: 61 GLDFGT--AEAPGEGVVTGYGKVDGRLVFLFAQDFTVFGGALGEMHARKITKVMDLAAEN 118
Query: 121 GAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIG 180
GAP++GLNDSGGARIQEGV SL GYGEIF N+I SGV+PQI+ I+GPCAGGAVYSPAI
Sbjct: 119 GAPIVGLNDSGGARIQEGVRSLDGYGEIFYRNSIYSGVIPQISVILGPCAGGAVYSPAIT 178
Query: 181 DFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL 240
DF+ MV+ S MFITGP+V+++VTG + LGGA VH+ SG AH S+E V+
Sbjct: 179 DFVFMVEKTSQ-MFITGPKVIESVTGAKINSEDLGGAKVHSTISGNAHFTAASEEGVLQQ 237
Query: 241 IKRLLSYLPSNNMEKPPRVK-----PKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVD 295
++ LLSYLPS+ EKPP + P DE R EL DIVP D K YDVR VI +VD
Sbjct: 238 VRNLLSYLPSSFEEKPPHQRAKHPVPLDE---RVQELLDIVPVDGTKVYDVRHVIEKVVD 294
Query: 296 RDENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRF 355
++ FLE+QP FA N V+GF RING TVGI+ANNP +AG LDI+SSDK ARF+RF
Sbjct: 295 DEQ-----FLEVQPQFARNIVVGFARINGDTVGIIANNPKMMAGGLDINSSDKCARFIRF 349
Query: 356 CDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYL 415
CD FNIP++TF DV G++PGV QE GIIRHGAK+LYAY+EATVP +TVILRKAYGGAY+
Sbjct: 350 CDCFNIPLITFEDVSGFIPGVQQEHGGIIRHGAKILYAYSEATVPKITVILRKAYGGAYV 409
Query: 416 AMGSKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFAN 475
A+ SK +GAD VFAWP AE+AVMGPEGAANIIF KEI ++ NP+ R+ KI EYRE+FAN
Sbjct: 410 ALNSKAIGADLVFAWPNAELAVMGPEGAANIIFAKEIKESANPDATRQAKISEYRERFAN 469
Query: 476 PYVAASRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
PYVAA+ G IDDVIDP +TR +V AL L+NK+ LP KKHGNIPL
Sbjct: 470 PYVAAANGMIDDVIDPRDTRKSLVSALAMLKNKKKTLPKKKHGNIPL 516
>pir||T44982 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) alpha chain
[validated] - Propionigenium modestum (fragment)
>gi|2706398|emb|CAA05137.1| (AJ002015) methylmalonyl-CoA
decarboxylase, alpha-subunit [Propionigenium modestum]
Length = 512
Score = 639 bits (1630), Expect = 0.0
Identities = 316/518 (61%), Positives = 397/518 (76%), Gaps = 6/518 (1%)
Query: 5 EKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEF 64
+K++DL ++++KI GG + I+KQH GK+TARER+ L D G+FVE+ FV+HR T F
Sbjct: 1 KKIQDLQKKKEKIALGGGIKRIEKQHASGKMTARERLAYLFDEGTFVEMDAFVQHRCTNF 60
Query: 65 GMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPV 124
GMDK+DLP++ V+TGYG ++GR+V+ ++QDFTV GG+LGEMHA KI + M++A + GAPV
Sbjct: 61 GMDKQDLPSESVVTGYGMVDGRVVYAFSQDFTVTGGALGEMHAKKICKAMDMAGKVGAPV 120
Query: 125 IGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFIL 184
+GLNDSGGARIQE VD+L GYG+IF N+I SGVVPQI+AI+GPCAGGAVYSPA+ DFI
Sbjct: 121 VGLNDSGGARIQEAVDALSGYGDIFYRNSIYSGVVPQISAILGPCAGGAVYSPALTDFIF 180
Query: 185 MVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRL 244
MVD S MFITGPQV+K VTG +VT QLGGA+ H SG A I + D+ I I+RL
Sbjct: 181 MVDQTSQ-MFITGPQVIKTVTGEEVTAEQLGGAMTHNSTSGCAQFISQDDKACIDDIRRL 239
Query: 245 LSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDF 304
+S+LPSNNMEK P +D+ + PEL ++PD+PNKAY++ VI IVD N D+
Sbjct: 240 ISFLPSNNMEKAPEFGCEDDLNIQFPELDALMPDNPNKAYNMFDVITKIVD-----NGDY 294
Query: 305 LELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIV 364
+E QP+++ N + F R+NG++VGI+AN P +AG LDIDS DK A+F+R CDAFNIP++
Sbjct: 295 MEYQPHYSKNIITCFARVNGKSVGIIANQPQVMAGCLDIDSGDKCAKFIRTCDAFNIPLL 354
Query: 365 TFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGA 424
T VDVPG+LPGV QE GIIRHGAK+LYAY+EATVP VT+I RKAYGGAY+AM SK LGA
Sbjct: 355 TIVDVPGFLPGVTQEYGGIIRHGAKILYAYSEATVPKVTLITRKAYGGAYVAMCSKSLGA 414
Query: 425 DFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGY 484
D V AWPTAEIAVMGP GA NIIFRK+I A++P KQK+ EY +FANPY AA RG
Sbjct: 415 DVVLAWPTAEIAVMGPAGAVNIIFRKDIKDAKDPAATTKQKLDEYTTEFANPYQAARRGL 474
Query: 485 IDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
+DDVI+P +R +IV A LE KR KLP KKHGNIPL
Sbjct: 475 VDDVIEPKTSRQRIVDAFNMLEGKREKLPAKKHGNIPL 512
>gb|AAK42602.1| Propionyl-CoA carboxylase beta subunit (ppcB) [Sulfolobus
solfataricus]
Length = 523
Score = 624 bits (1592), Expect = e-178
Identities = 305/520 (58%), Positives = 381/520 (72%), Gaps = 5/520 (0%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRAT 62
M + +EDL ++K+ + GGEE I QH KGKLTARER+ L D G F EI F RAT
Sbjct: 9 MDKLIEDLKILKEKVYKGGGEEKINFQHGKGKLTARERLNQLFDEGKFNEILTFATTRAT 68
Query: 63 EFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGA 122
EFG+DK DGVI G+G I+GR VF YAQDFT++GGSLGE HA KI R ELAL+ GA
Sbjct: 69 EFGLDKNRFYGDGVIAGWGKIDGRQVFAYAQDFTILGGSLGETHANKIVRAYELALKVGA 128
Query: 123 PVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDF 182
PVIG+NDSGGARIQEG SL+GYG +FKMN + SGV+PQIT + GP AGGAVYSPA+ DF
Sbjct: 129 PVIGINDSGGARIQEGALSLEGYGAVFKMNVMASGVIPQITIMAGPAAGGAVYSPALTDF 188
Query: 183 ILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIK 242
++M+ + +MF+TGP++ K G +V+ LGGA++HA KSG H + +++++ I + K
Sbjct: 189 LIMIKGDAYYMFVTGPEITKVSIGEEVSYQDLGGAIIHATKSGVVHFVAENEQDAINITK 248
Query: 243 RLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNP 302
RLLSYLPSNNME+PP V D R IVP D K +D+R +IY IVD N
Sbjct: 249 RLLSYLPSNNMEEPPYVDTGDPADRAVQSAESIVPTDSVKPFDIRDLIYNIVD-----NS 303
Query: 303 DFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIP 362
+FLE+ +A N +GFGRING VGIVANN + G +DID++DK ARF+RFCDAFNIP
Sbjct: 304 EFLEVHKLWAQNITVGFGRINGNVVGIVANNSAYYGGAIDIDAADKAARFIRFCDAFNIP 363
Query: 363 IVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHL 422
+++ VD PGY+PG DQE +GIIRHGAK+LYA+AEATVP +TVI+R++YGGA++AM K L
Sbjct: 364 VISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRRSYGGAHIAMSIKSL 423
Query: 423 GADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASR 482
GAD V+AWP+AEIAV GPEGA I++R+EI A+NPEE KQKI EY++ FANPY AA +
Sbjct: 424 GADLVYAWPSAEIAVTGPEGAVRILYRREIQSAQNPEELLKQKITEYKKLFANPYWAAEK 483
Query: 483 GYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
G IDDVI+P +TR I LE L NKR PKKHGNIPL
Sbjct: 484 GLIDDVIEPKDTRNVIARGLEMLRNKREFRYPKKHGNIPL 523
>gb|AAG19817.1| (AE005066) methylmalonyl-CoA decarboxylase, subunit alpha; MmdA
[Halobacterium sp. NRC-1]
Length = 516
Score = 621 bits (1583), Expect = e-177
Identities = 306/522 (58%), Positives = 388/522 (73%), Gaps = 6/522 (1%)
Query: 1 MGMMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHR 60
M M E++EDL ++ ++ L GGE I+ QH+KGKLTARERI+ LD G+F E+ HR
Sbjct: 1 MTMEERIEDLREQTERALLGGGEARIESQHEKGKLTARERIDYFLDDGTFNELDQLRTHR 60
Query: 61 ATEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEA 120
+T F MD+ LP DGV+TGYG +NGR FV+A DFTV GGSLGE+ A K+ ++M+ A+E
Sbjct: 61 STNFDMDETKLPGDGVVTGYGDVNGRTTFVFAHDFTVFGGSLGEVFAEKVTKVMDRAMEV 120
Query: 121 GAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIG 180
GAPV+GLNDS GARIQEGVD+L G+ EIF N SGVVPQI+AIMGPCAGGAVYSPAI
Sbjct: 121 GAPVVGLNDSAGARIQEGVDALGGFAEIFTRNEKASGVVPQISAIMGPCAGGAVYSPAIT 180
Query: 181 DFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL 240
DF +MV + S MFITGP V++ VTG V +LGGA HA +SG AH S+E +
Sbjct: 181 DFTVMVKDTS-HMFITGPDVIETVTGEQVGFEELGGATTHAAESGVAHFACDSEEAALDN 239
Query: 241 IKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENG 300
IKRLLSYLP NN+E PPRV+P D+P RR L IVPD+P K YD+ V+ ++VD
Sbjct: 240 IKRLLSYLPQNNVEDPPRVEPYDDPERRDDALETIVPDEPRKPYDMTDVVDSVVDEQS-- 297
Query: 301 NPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFN 360
F E+Q +A N V+GF R++G++VGIVAN P AG LDID+S+K +RFVRFCD+FN
Sbjct: 298 ---FFEVQADYAKNIVVGFARLDGRSVGIVANQPRVNAGTLDIDASEKGSRFVRFCDSFN 354
Query: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSK 420
+PI+T VDVPG+LPG DQE GIIRHGAK+LYA++EA+VP++TVI RKAYGGAY M SK
Sbjct: 355 VPILTLVDVPGFLPGTDQEHGGIIRHGAKLLYAFSEASVPLMTVITRKAYGGAYDVMASK 414
Query: 421 HLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAA 480
H+GAD +AWPTAEIAVMGP+GA N+++ E+ A++ R++ I EYRE+FANPY AA
Sbjct: 415 HIGADVNYAWPTAEIAVMGPKGAVNVLYSDELEAADDTAARRQELIDEYREEFANPYTAA 474
Query: 481 SRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
RGY+D VI+P ETR +++ L+ L +KR + P KKHGNIPL
Sbjct: 475 DRGYLDAVIEPTETRPRLIDDLDMLASKREETPDKKHGNIPL 516
>pir||T43828 propionyl-CoA carboxylase (EC 6.4.1.3) [validated] - Myxococcus
xanthus >gi|2627219|dbj|BAA23583.1| (AB007000)
propionyl-CoA carboxylase [Myxococcus xanthus]
Length = 524
Score = 616 bits (1571), Expect = e-175
Identities = 316/506 (62%), Positives = 380/506 (74%), Gaps = 10/506 (1%)
Query: 21 GGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGMDKRDLPADGVITGY 80
GG + I KQH+ GKLTARERI+LLLDPGSF E+ FV HR++EFGM + +P GV+TGY
Sbjct: 25 GGADRIAKQHESGKLTARERIDLLLDPGSFCELDKFVTHRSSEFGMGDKKIPGHGVVTGY 84
Query: 81 GTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVD 140
GT+ GR VFV+AQDFTV GGSL +A KI +IM+LA GAPVIGLNDSGGARIQEGV+
Sbjct: 85 GTVEGRKVFVFAQDFTVFGGSLSGAYAQKICKIMDLATRVGAPVIGLNDSGGARIQEGVE 144
Query: 141 SLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILMVDNPSTFMFITGPQV 200
SL GY +IF NT SGVVPQI+ IMGPCAGGAVYSPAI DFI+MV + S +MFITGP V
Sbjct: 145 SLAGYADIFVRNTGCSGVVPQISLIMGPCAGGAVYSPAITDFIMMVKDTS-YMFITGPDV 203
Query: 201 VKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSNNMEKPPRVK 260
+K VT +V+ LGGA+ H QKSG AH ++++ I + + LLS+LPSNN E+ P
Sbjct: 204 IKTVTHEEVSKEALGGAVTHNQKSGVAHFAAENEQAAIVMTRELLSFLPSNNQEEAPVQP 263
Query: 261 PKDEPFR-RTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIGF 319
+D+ FR R IVP +PNK YD+++VI AIVD + F E+Q +FA N VIGF
Sbjct: 264 CEDDAFRGRRSRSRTIVPSNPNKPYDIKEVIKAIVD-----DKHFFEVQEHFAKNIVIGF 318
Query: 320 GRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGYLPGVDQE 379
R+NG+TVG+VAN P LAGVLDID+S K ARFVRFCD FNIP+VT VDVPG+LPG DQE
Sbjct: 319 ARMNGRTVGVVANQPAVLAGVLDIDASIKAARFVRFCDCFNIPLVTLVDVPGFLPGTDQE 378
Query: 380 SRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADF---VFAWPTAEIA 436
GII HGAK+LYAYAEATVP VTVI RKAYGGAY M SKH+ AD FAWPTAEIA
Sbjct: 379 WGGIITHGAKLLYAYAEATVPKVTVITRKAYGGAYDVMASKHIRADMNFANFAWPTAEIA 438
Query: 437 VMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYIDDVIDPAETRA 496
VMGPEGA NIIFR E+AKA + R + +YR+KFA P+ AA GYID++I P ETRA
Sbjct: 439 VMGPEGAVNIIFRNELAKAPDAAAERARLTADYRDKFATPFKAAELGYIDEIIRPEETRA 498
Query: 497 KIVMALEALENKRVKLPPKKHGNIPL 522
K++ +LE L++KR + P+KHGNIPL
Sbjct: 499 KLIRSLELLKDKRQENLPRKHGNIPL 524
>pir||T44289 probable methylmalonyl-CoA decarboxylase (EC 4.1.1.41) [imported] -
Sulfolobus metallicus >gi|2792514|gb|AAB97083.1|
(AF042099) putative carboxyl transferase [Sulfolobus
metallicus]
Length = 517
Score = 612 bits (1561), Expect = e-174
Identities = 293/514 (57%), Positives = 383/514 (74%), Gaps = 5/514 (0%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRAT 62
M + +E++ + K + GGE+ IK QH+KGK+TARERI LL D G+F EI F + ++T
Sbjct: 1 MDKLIEEMKSLKAKAMAGGGEDKIKAQHEKGKMTARERIALLFDEGTFSEIMTFARTQST 60
Query: 63 EFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGA 122
EFG+DK DL DGV+TG+G I+GR FVY+QDFT +GG+LGEMHA KI ++ ELAL+ GA
Sbjct: 61 EFGLDKTDLYGDGVVTGWGKIDGRTAFVYSQDFTSLGGTLGEMHASKIGKVYELALKVGA 120
Query: 123 PVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDF 182
PVIG+NDSGGARIQEG SL+GYG +FK N + SGV+PQIT + GP AGGAVYSPA+ DF
Sbjct: 121 PVIGINDSGGARIQEGAASLEGYGLVFKNNVMASGVIPQITIMAGPAAGGAVYSPALTDF 180
Query: 183 ILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIK 242
++MV + +MF+TGP++ K V G DV+ LGGA+VHA KSG H + S++E I K
Sbjct: 181 LIMVKGDAYYMFVTGPEITKVVLGEDVSMQDLGGAVVHASKSGVVHFMVDSEQEAINTAK 240
Query: 243 RLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNP 302
RLLSYLPSNNME+PP + D R + IVP D K +D+R ++YA+VD N
Sbjct: 241 RLLSYLPSNNMEEPPYMDTGDTNDREVKDAESIVPTDSAKTFDIRDLVYAVVD-----NG 295
Query: 303 DFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIP 362
+FLE+ ++A N +GF R+ G VGIVANN + +G +DID++DK ARF+RFCDAFNIP
Sbjct: 296 EFLEVHKHWAQNITVGFARVAGNVVGIVANNSAYASGAIDIDAADKAARFIRFCDAFNIP 355
Query: 363 IVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHL 422
+V+ VD PGY+PG DQE RGIIRHGAK+LYA+AEATVP +TV++R++YGGA++AM K L
Sbjct: 356 LVSIVDTPGYIPGTDQEYRGIIRHGAKMLYAFAEATVPKITVVVRRSYGGAHIAMSIKSL 415
Query: 423 GADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASR 482
GAD ++AWP+AEIAV GPEGA I+++KE+ A NP+E KQ+I EY++ FANPY AA +
Sbjct: 416 GADVIYAWPSAEIAVTGPEGAVRILYKKELQAASNPDELLKQRIAEYKKLFANPYWAAKK 475
Query: 483 GYIDDVIDPAETRAKIVMALEALENKRVKLPPKK 516
G IDDVI+P +TR I+ AL L+NKR PKK
Sbjct: 476 GLIDDVIEPKDTRKVIMSALSMLKNKREYRYPKK 509
>pir||H75410 probable propionyl-CoA carboxylase, alpha subunit - Deinococcus
radiodurans (strain R1)
>gi|6459066|gb|AAF10887.1|AE001978_7 (AE001978)
propionyl-CoA carboxylase, alpha subunit, putative
[Deinococcus radiodurans]
Length = 520
Score = 609 bits (1553), Expect = e-173
Identities = 315/521 (60%), Positives = 388/521 (74%), Gaps = 9/521 (1%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRAT 62
+ E + + QRR+K+ + GG E +KQ + GKLTARERIE LLDPGSF+E FV+H
Sbjct: 8 LQELIATMEQRRRKVEEGGGPERQQKQREGGKLTARERIERLLDPGSFLESSTFVEHGRN 67
Query: 63 EFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGA 122
MD + P +GV+TG GTI+GR VFV++QDFTV+GGSLG+M+A K+ +IM+LA + G
Sbjct: 68 RL-MDGIEAPGEGVVTGSGTIDGRQVFVFSQDFTVLGGSLGKMNASKVTKIMDLAAKTGC 126
Query: 123 PVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDF 182
PVIGLNDS GARIQEGVDSL GYGEIF N + SG VPQI+AI+GPCAGGAVYSPAI DF
Sbjct: 127 PVIGLNDSAGARIQEGVDSLSGYGEIFYRNAVYSGSVPQISAILGPCAGGAVYSPAITDF 186
Query: 183 ILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIK 242
ILM S++MFITGP+V+K+VT +VT QLGGA VH +KSG AHL + DE VI IK
Sbjct: 187 ILM-SRGSSYMFITGPEVIKSVTREEVTFDQLGGADVHTRKSGVAHLAYEGDEAVIDGIK 245
Query: 243 RLLSYLPSNNMEKPPRVKPKDEPF-RRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGN 301
LL YLP N EK P VKP +P RR +L DIV D + Y ++ VI +VD +
Sbjct: 246 DLLGYLPQNAREKAP-VKPTSDPADRRNEKLLDIVTPDQRRPYAMQDVIRELVD-----D 299
Query: 302 PDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNI 361
FLE+QP +A N ++GF R+NGQ+VGIVANNP L+G L+ID+SDK ARF+R CD +N+
Sbjct: 300 GTFLEIQPDWAKNIIVGFARLNGQSVGIVANNPKALSGSLNIDASDKAARFIRTCDCYNV 359
Query: 362 PIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKH 421
PI+T VDV G+LPGV QE GIIRHGAK+LYAYAEATVP VT+I RK+YGGAYLAM S+
Sbjct: 360 PILTLVDVSGFLPGVQQEYGGIIRHGAKMLYAYAEATVPKVTLITRKSYGGAYLAMNSRD 419
Query: 422 LGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAAS 481
+GAD V+AWPTA +AVMG EGAANI++RK+I +ENP R +KI EY+E F NPYVAA+
Sbjct: 420 MGADVVYAWPTATVAVMGAEGAANIVYRKDIKDSENPAATRAEKIAEYKEAFDNPYVAAA 479
Query: 482 RGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
+GYIDDVI ETR +++ E L NK P KKHGNIPL
Sbjct: 480 KGYIDDVIPMEETRERLIRTFEMLANKEETRPFKKHGNIPL 520
>pir||A49094 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) alpha chain -
Veillonella parvula >gi|415593|gb|AAC36820.1| (L22208)
methylmalonyl-CoA decarboxylase alpha-subunit
[Veillonella parvula] >gi|415915|emb|CAA80872.1|
(Z24754) alpha-subunit,methylmalonyl-CoA decarboxylase
[Veillonella parvula]
Length = 509
Score = 607 bits (1549), Expect = e-173
Identities = 300/520 (57%), Positives = 385/520 (73%), Gaps = 14/520 (2%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRAT 62
+ EK+E L+++ K+ GGE+ ++KQH +GK+TARER+ L D SFVE+ FVKHR
Sbjct: 4 VQEKIELLHEKLAKVKAGGGEKRVEKQHAQGKMTARERLAKLFDDNSFVELDQFVKHRCV 63
Query: 63 EFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGA 122
FG +K++LP +GV+TGYGTI+GRLV+ +AQDFTV GGSLGEMHA KI ++ LA++ GA
Sbjct: 64 NFGQEKKELPGEGVVTGYGTIDGRLVYAFAQDFTVEGGSLGEMHAAKIVKVQRLAMKMGA 123
Query: 123 PVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDF 182
P++G+NDSGGARIQE VD+L GYG+IF NT SGV+PQI+ IMGPCAGGAVYSPA+ DF
Sbjct: 124 PIVGINDSGGARIQEAVDALAGYGKIFFENTNASGVIPQISVIMGPCAGGAVYSPALTDF 183
Query: 183 ILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIK 242
I MV N S MFITGP V+K+VTG +VT LGGA+ H SG AH +++++ I I+
Sbjct: 184 IYMVKNTSQ-MFITGPAVIKSVTGEEVTAEDLGGAMAHNSVSGVAHFAAENEDDCIAQIR 242
Query: 243 RLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNP 302
LL +LPSNNME P V D+P R L ++PD+ N YD++ VI A VD N
Sbjct: 243 YLLGFLPSNNMEDAPLVDTGDDPTREDESLNSLLPDNSNMPYDMKDVIAATVD-----NG 297
Query: 303 DFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIP 362
++ E+QP++A N + F R +GQ+VGI+AN P +AG LDI++SDK +RF+RFCDAFNIP
Sbjct: 298 EYYEVQPFYATNIITCFARFDGQSVGIIANQPKVMAGCLDINASDKSSRFIRFCDAFNIP 357
Query: 363 IVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHL 422
IV FVDVPG+LPG +QE GIIRHGAK+LYAY+EATVP +TVI RKAYGG+YLAM S+ L
Sbjct: 358 IVNFVDVPGFLPGTNQEWGGIIRHGAKMLYAYSEATVPKITVITRKAYGGSYLAMCSQDL 417
Query: 423 GADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASR 482
GAD V+AWPT+EIAVMGP GAANIIF+K +E + K +Y E+FA PY AA R
Sbjct: 418 GADQVYAWPTSEIAVMGPAGAANIIFKK--------DEDKDAKTAKYVEEFATPYKAAER 469
Query: 483 GYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
G++D VI+P +TR ++ AL L +KR PKKHGNIPL
Sbjct: 470 GFVDVVIEPKQTRPAVINALAMLASKRENRAPKKHGNIPL 509
>pir||D71667 propionyl-COA carboxylase beta chain precursor (pccB) RP619 -
Rickettsia prowazekii >gi|3861162|emb|CAA15062.1|
(AJ235272) PROPIONYL-COA CARBOXYLASE BETA CHAIN
PRECURSOR (pccB) [Rickettsia prowazekii]
Length = 514
Score = 600 bits (1530), Expect = e-170
Identities = 307/516 (59%), Positives = 374/516 (71%), Gaps = 13/516 (2%)
Query: 9 DLYQRRKKILQMGGEEA-IKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGMD 67
+L RK I + GG EA I QH KGKLTARERIE+LLDP SF E GMFV HR FGM
Sbjct: 10 ELLDERKNIARQGGGEARINAQHQKGKLTARERIEVLLDPNSFTETGMFVSHRCDNFGMQ 69
Query: 68 KRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGL 127
+ DGV+TGYGTINGRLVF+Y+QDFTV+GGSLGE HA KI I++ A+ GAPVIG+
Sbjct: 70 NKKFLGDGVVTGYGTINGRLVFIYSQDFTVLGGSLGEYHAKKICDIIDQAIATGAPVIGI 129
Query: 128 NDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILMVD 187
NDSGGARIQEGVD+L GYGE+F+ N + SGV+PQIT IMGPCAGGAVYSPA+ DFI MV
Sbjct: 130 NDSGGARIQEGVDALAGYGELFQRNVLASGVIPQITLIMGPCAGGAVYSPALTDFIFMVK 189
Query: 188 NPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSY 247
N S++MF+TGP VVK VTG +VT +LGGA +H KSG A L +D E + I++ ++
Sbjct: 190 N-SSYMFVTGPDVVKTVTGEEVTQEKLGGARMHTTKSGVADLAFNNDIEALLEIRKFFNF 248
Query: 248 LPSNNMEKPPRVKPKDEPFRRTP-ELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLE 306
LPS+N P V+P +P R L ++P+ PNK YD+++++ IVD E F E
Sbjct: 249 LPSSNRSTLP-VRPTVDPADRVDMSLSTLIPNTPNKPYDMKELVERIVDEGE-----FFE 302
Query: 307 LQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTF 366
LQP FA N +IGFG + G VG +AN P+HLAG LDI++S K ARF+RFCDAFNI IV+
Sbjct: 303 LQPDFAKNIIIGFGYMEGYPVGFIANQPLHLAGCLDINASRKAARFIRFCDAFNISIVSL 362
Query: 367 VDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADF 426
VDVPG+LPG QE GII+HGAK+LYAYAEATVP +TVI RKAYGGAY+ M SKHL D
Sbjct: 363 VDVPGFLPGTSQEHEGIIKHGAKLLYAYAEATVPKITVITRKAYGGAYIVMNSKHLRGDI 422
Query: 427 VFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYID 486
+AW +EIAVMG EGAA IIF++E E +KQKI EYR+ +P+VAASRGY+D
Sbjct: 423 NYAWFNSEIAVMGAEGAAEIIFKEEC----KDNEAKKQKIDEYRKVVTSPFVAASRGYLD 478
Query: 487 DVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
D+I P TR +I AL L K+V LP KKH N+PL
Sbjct: 479 DIIRPQNTRWRICKALNFLRTKKVSLPWKKHDNLPL 514
>sp|P53003|PCCB_SACER PROPIONYL-COA CARBOXYLASE BETA CHAIN (PCCASE) (PROPANOYL-COA:CARBON
DIOXIDE LIGASE) >gi|2127500|pir||S71008 propionyl-CoA
carboxylase beta chain homolog - Saccharopolyspora
erythraea >gi|1177652|emb|CAA63310.1| (X92557)
propionyl-CoA carboxylase [Saccharopolyspora erythraea]
Length = 546
Score = 596 bits (1520), Expect = e-169
Identities = 305/530 (57%), Positives = 379/530 (70%), Gaps = 20/530 (3%)
Query: 6 KVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFG 65
K+ DLY+R + + G E A+ KQH KGK TARERI++LLD GSFVE+ +HR+T FG
Sbjct: 24 KLADLYRRNHEAVHAGSERAVAKQHAKGKRTARERIDMLLDEGSFVELDEHARHRSTNFG 83
Query: 66 MDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
MD DGV+TG+GT++GR V V++QDFTV GGSLGE+ KI ++M+LA++ G P++
Sbjct: 84 MDADRPYGDGVVTGWGTVDGRRVCVFSQDFTVFGGSLGEVFGEKIVKVMDLAMKTGCPLV 143
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
G+NDSGGARIQEGV +L Y EIFK NT SGV+PQI+ IMGPCAGGAVYSPAI DF +M
Sbjct: 144 GINDSGGARIQEGVAALGLYAEIFKRNTHASGVIPQISLIMGPCAGGAVYSPAITDFTVM 203
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
VD S MFITGP V+K VTG DV+ LGGA H ++SG AH + +++ I +K LL
Sbjct: 204 VDQTS-HMFITGPDVIKTVTGEDVSFEDLGGARTHNERSGNAHYLATDEDDAISYVKELL 262
Query: 246 SYLPSNNMEKPPRVKPKDEPFRRTP---------ELYDIVPDDPNKAYDVRQVIYAIVDR 296
S+LPSNN+ P V P E + EL +VPD PN+ YD+R+VI +VD
Sbjct: 263 SFLPSNNLSSSP-VFPGAEVEEGSVADGVGDADLELDALVPDSPNQPYDMREVITRLVDE 321
Query: 297 DENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFC 356
E FLE+ FAPN + GFGRI G +VG+VAN P+ LAG LDID+S+K ARFVRFC
Sbjct: 322 GE-----FLEVSALFAPNMLCGFGRIEGASVGVVANQPMQLAGTLDIDASEKAARFVRFC 376
Query: 357 DAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLA 416
DAFNIP++T VDVPG+LPG Q+ IIR GAK+LYAYAEATVP+VTVI RKAYGGAY
Sbjct: 377 DAFNIPVLTLVDVPGFLPGTGQDWNAIIRRGAKLLYAYAEATVPLVTVITRKAYGGAYDV 436
Query: 417 MGSKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKA----ENPEEFRKQKIQEYREK 472
MGSKHLGAD AWPTA+IAVMG +GAANI++R+++A+A E+ E R + QEY +
Sbjct: 437 MGSKHLGADINLAWPTAQIAVMGAQGAANILYRRQLAEAAERGEDVEALRARLQQEYEDT 496
Query: 473 FANPYVAASRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
NPYVAA RGY+D VI P+ TR + AL L +KR LP KKHGNIPL
Sbjct: 497 LCNPYVAAERGYVDSVIPPSHTRGHVARALRMLADKREALPAKKHGNIPL 546
>pir||T42208 propionyl-CoA carboxylase complex B chain - Streptomyces coelicolor
>gi|4704652|gb|AAD28194.1|AF113605_1 (AF113605)
propionyl-CoA carboxylase complex B subunit
[Streptomyces coelicolor A3(2)]
Length = 530
Score = 596 bits (1520), Expect = e-169
Identities = 301/521 (57%), Positives = 378/521 (71%), Gaps = 11/521 (2%)
Query: 6 KVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFG 65
K+ DL +R ++ G A++KQH KGKLTARERI+LLLD GSFVE+ F +HR+T FG
Sbjct: 17 KLADLRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFG 76
Query: 66 MDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
+D DGV+TGYGT++GR V V++QDFTV GG+LGE++ KI ++M+ AL+ G PV+
Sbjct: 77 LDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVV 136
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
G+NDSGGARIQEGV SL YGEIF+ NT SGV+PQI+ ++GPCAGGAVYSPAI DF +M
Sbjct: 137 GINDSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVM 196
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
VD S MFITGP V+K VTG DV +LGGA H SG AH + +++ + +K+LL
Sbjct: 197 VDQTS-HMFITGPDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLL 255
Query: 246 SYLPSNNMEKPPRVKPKDEPFRRT---PELYDIVPDDPNKAYDVRQVIYAIVDRDENGNP 302
SYLPSNN+ +PP P++ T EL IVPD N+ YD+ VI ++D +
Sbjct: 256 SYLPSNNLSEPPAF-PEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLD-----DA 309
Query: 303 DFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIP 362
+F E QP FAPN + GFGR+ G+ VGIVAN P+ AG LDI +S+K ARFVR CDAFN+P
Sbjct: 310 EFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAFNVP 369
Query: 363 IVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHL 422
++TFVDVPG+LPGVDQE GIIR GAK+++AYAEATVP++TVI RKA+GGAY MGSKHL
Sbjct: 370 VLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHL 429
Query: 423 GADFVFAWPTAEIAVMGPEGAANIIFRKEIAKA-ENPEEFRKQKIQEYREKFANPYVAAS 481
GAD AWPTA+IAVMG +GA NI+ R+ IA A ++ E R + IQEY + NPY AA
Sbjct: 430 GADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAE 489
Query: 482 RGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
RGY+D VI P++TR IV L L KR LPPKKHGNIPL
Sbjct: 490 RGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKHGNIPL 530
>pir||T29065 probable methylmalonyl-CoA decarboxylase (EC 4.1.1.41) -
Streptomyces coelicolor >gi|3355683|emb|CAA19983.1|
(AL031124) putative carboxyl transferase [Streptomyces
coelicolor A3(2)]
Length = 527
Score = 583 bits (1486), Expect = e-165
Identities = 290/516 (56%), Positives = 369/516 (71%), Gaps = 6/516 (1%)
Query: 6 KVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFG 65
+V +L+ R L E+A QH KGKLTARERIELLLDPGSF E+ +HRAT FG
Sbjct: 17 RVAELHGIRAAALAGPSEKATAAQHAKGKLTARERIELLLDPGSFREVEQLRRHRATGFG 76
Query: 66 MDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
++ + DGVITG+GT+ GR VFVYA DF + GG+LGE HA KI +IM++A+ AGAP++
Sbjct: 77 LEAKKPYTDGVITGWGTVEGRTVFVYAHDFRIFGGALGEAHATKIHKIMDMAIAAGAPLV 136
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
LND GARIQEGV +L GYG IF+ NT SGV+PQI+ ++GPCAGGA YSPA+ DF+ M
Sbjct: 137 SLNDGAGARIQEGVSALAGYGGIFQRNTKASGVIPQISVMLGPCAGGAAYSPALTDFVFM 196
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
V + S MFITGP VVKAVTG ++T LGGA VHA+ SG H +E + ++ LL
Sbjct: 197 VRDTSQ-MFITGPDVVKAVTGEEITQNGLGGADVHAETSGVCHFAYDDEETCLAEVRYLL 255
Query: 246 SYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFL 305
S LP NN E PPR + D RR+ L D+VP D N+ YD+ +VI +VD E +L
Sbjct: 256 SLLPQNNRENPPRAESSDPVDRRSDTLLDLVPADGNRPYDMTKVIEELVDEGE-----YL 310
Query: 306 ELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVT 365
E+ +A N + R++G+ VGIVAN P LAGVLDI++S+K ARFV+ CDAFNIPI+T
Sbjct: 311 EVHERWARNIICALARLDGRVVGIVANQPQALAGVLDIEASEKAARFVQMCDAFNIPIIT 370
Query: 366 FVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGAD 425
+DVPG+LPGVDQE GIIRHGAK+LYAY ATVP +++ILRKAYGGAY+ M S+ +GAD
Sbjct: 371 LLDVPGFLPGVDQEHGGIIRHGAKLLYAYCNATVPRISLILRKAYGGAYIVMDSQSIGAD 430
Query: 426 FVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYI 485
+AWPT EIAVMG EGAAN+IFR++IA AE+PE R + ++EY+ + +PY AA RG +
Sbjct: 431 LTYAWPTNEIAVMGAEGAANVIFRRQIADAEDPEAMRARMVKEYKSELMHPYYAAERGLV 490
Query: 486 DDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIP 521
DDVIDPAETR ++ +L L K LP +KHGN P
Sbjct: 491 DDVIDPAETREVLITSLAMLHTKHADLPSRKHGNPP 526
>sp|P79384|PCCB_PIG PROPIONYL-COA CARBOXYLASE BETA CHAIN, MITOCHONDRIAL PRECURSOR
(PCCASE BETA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE
LIGASE BETA SUBUNIT) >gi|1840397|dbj|BAA19203.1|
(AB000886) Propionyl-CoA carboxylase beta chain
precursor [Sus scrofa]
Length = 539
Score = 562 bits (1433), Expect = e-159
Identities = 293/517 (56%), Positives = 362/517 (69%), Gaps = 16/517 (3%)
Query: 8 EDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGM- 66
E + +R+ L GG+ I QH +GKLTARERI LLLDPGSF+E MFV+HR +FGM
Sbjct: 37 ERIENKRQAALLGGGQRRIDSQHKRGKLTARERISLLLDPGSFIESDMFVEHRCADFGMA 96
Query: 67 -DKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
DK P D V+TG G INGRLV+V++QDFTV GGSL HA KI +IM+ A+ GAPVI
Sbjct: 97 ADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAMTVGAPVI 156
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
GLNDSGGARIQEGV+SL GY +IF N SGV+PQI+ IMGPCAGGAVYSPA+ DF M
Sbjct: 157 GLNDSGGARIQEGVESLAGYADIFLRNVSASGVIPQISLIMGPCAGGAVYSPALTDFTFM 216
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
V + S ++FITGP VVK+VT DVT +LGGA H SG AH +D + + ++
Sbjct: 217 VKDTS-YLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFDNDVDALCNLREFF 275
Query: 246 SYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFL 305
+YLP +N + P + D R PEL +VP + +AYD+ +IY+IVD DF
Sbjct: 276 NYLPLSNQDPAPIRECHDPSDRLVPELDTVVPLESTRAYDMVDIIYSIVDER-----DFF 330
Query: 306 ELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVT 365
E+ P +A N ++GF R+NG+TVGIV N P +G LDI+SS K ARFVRFCDAFNIP++T
Sbjct: 331 EIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLIT 390
Query: 366 FVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGAD 425
FVDVPG+LPG QE GIIRHGAK+LYA+AEATVP +TVI RKAYGGAY M SKHL D
Sbjct: 391 FVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLCGD 450
Query: 426 FVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYI 485
+AWPTAEIAVMG +GA IIF+ EN E + EY EKFANP+ AA RG++
Sbjct: 451 TNYAWPTAEIAVMGAKGAVEIIFKGH----ENVEAAQ----AEYIEKFANPFPAAVRGFV 502
Query: 486 DDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
DD+I P+ TRA+I L+ L +K+V+ P +KH NIPL
Sbjct: 503 DDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 539
>pir||T45009 propionyl-CoA carboxylase (EC 6.4.1.3) beta chain precursor
[validated] - human >gi|4127990|emb|CAA07066.1|
(AJ006487) propionyl-CoA carboxylase [Homo sapiens]
Length = 539
Score = 558 bits (1423), Expect = e-158
Identities = 293/517 (56%), Positives = 363/517 (69%), Gaps = 16/517 (3%)
Query: 8 EDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGM- 66
E + +R+ L GG+ I QH +GKLTARERI LLLDPGSFVE MFV+HR +FGM
Sbjct: 37 ERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFVESDMFVEHRCADFGMA 96
Query: 67 -DKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
DK P D V+TG G INGRLV+V++QDFTV GGSL HA KI +IM+ A+ GAPVI
Sbjct: 97 ADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVI 156
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
GLNDSGGARIQEGV+SL GY +IF N SGV+PQI+ IMGPCAGGAVYSPA+ DF M
Sbjct: 157 GLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFM 216
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
V + S ++FITGP VVK+VT DVT +LGGA H SG AH ++D + + ++
Sbjct: 217 VKDTS-YLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDFF 275
Query: 246 SYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFL 305
+YLP ++ + P + D R PEL IVP + KAY++ +I+++VD E F
Sbjct: 276 NYLPLSSQDPAPVRECHDPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDERE-----FF 330
Query: 306 ELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVT 365
E+ P +A N ++GF R+NG+TVGIV N P +G LDI+SS K ARFVRFCDAFNIP++T
Sbjct: 331 EIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLIT 390
Query: 366 FVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGAD 425
FVDVPG+LPG QE GIIRHGAK+LYA+AEATVP VTVI RKAYGGAY M SKHL D
Sbjct: 391 FVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGD 450
Query: 426 FVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYI 485
+AWPTAEIAVMG +GA IIF+ EN E + EY EKFANP+ AA RG++
Sbjct: 451 TNYAWPTAEIAVMGAKGAVEIIFKGH----ENVEAAQ----AEYIEKFANPFPAAVRGFV 502
Query: 486 DDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
DD+I P+ TRA+I L+ L +K+V+ P +KH NIPL
Sbjct: 503 DDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 539
>pir||T16428 propionyl-CoA carboxylase (EC 6.4.1.3) beta chain F52E4.1
[similarity] - Caenorhabditis elegans
>gi|1293830|gb|AAB54030.1| (U56964) Similar to
propionyl-CoA carboxylase beta; coded for by C. elegans
cDNA yk74f9.5; coded for by C. elegans cDNA yk51d4.5;
coded for by C. elegans cDNA yk90b1.5; coded for by C.
elegans cDNA yk104d12.5; coded for by C. elegans cDNA
yk82f4.5; cod>
Length = 536
Score = 557 bits (1420), Expect = e-157
Identities = 287/511 (56%), Positives = 360/511 (70%), Gaps = 13/511 (2%)
Query: 12 QRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGMDKRDL 71
+ R+K L GG++ + QH +GKLTARERI+LLLD +F E MF +H +FGM K
Sbjct: 39 ETREKALLGGGKKRVDAQHARGKLTARERIDLLLDRNTFREYDMFAEHTCNDFGMQKEKY 98
Query: 72 PADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSG 131
P D V+TG G INGR VFV++QDFTV GGSL +HA KI +IM A+ GAPVIGLNDSG
Sbjct: 99 PGDSVVTGRGEINGRTVFVFSQDFTVFGGSLSSIHAKKIVKIMREAMLVGAPVIGLNDSG 158
Query: 132 GARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILMVDNPST 191
GARIQEGV+SL GY +IF+ N + SGVVPQI+ IMGPCAGGAVYSPA+ DF MV + S
Sbjct: 159 GARIQEGVESLAGYADIFQENVMASGVVPQISMIMGPCAGGAVYSPALTDFTFMVRDTS- 217
Query: 192 FMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSN 251
++FITGP VVKAVT +VT +LGGA H SG AH +D + + ++ L +YLP +
Sbjct: 218 YLFITGPDVVKAVTNEEVTQEELGGAKTHTVTSGVAHGAFDNDVDALMSLRELFNYLPLS 277
Query: 252 NMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYF 311
N + P +D R P L +VP + AY+++ V++A+VD DF E+ P +
Sbjct: 278 NTDAAPIRAAEDPWDRAVPSLDTVVPLESTAAYNMKDVVHALVDEG-----DFFEIMPDY 332
Query: 312 APNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPG 371
A N VIGF R+NG+TVGIV NNP AG LDI+SS K ARFVRFCDAFNIPI+T VDVPG
Sbjct: 333 AKNLVIGFARMNGRTVGIVGNNPKFAAGCLDINSSVKGARFVRFCDAFNIPIITLVDVPG 392
Query: 372 YLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADFVFAWP 431
+LPG QE GIIRHGAK+LYA+AEATVP +T+I RKA+GGAY M SKHL D +AWP
Sbjct: 393 FLPGTAQEYGGIIRHGAKLLYAFAEATVPKITIITRKAFGGAYDVMSSKHLRGDINYAWP 452
Query: 432 TAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYIDDVIDP 491
TAE+AVMG +GA +I+FR N +E Q +EY E F+NP+ AA RG++DD+I P
Sbjct: 453 TAEVAVMGAKGAVSILFR-------NDKEHAVQHEEEYTELFSNPFPAAVRGFVDDIIIP 505
Query: 492 AETRAKIVMALEALENKRVKLPPKKHGNIPL 522
+ETR K+ L LE+K++K P KKHGNIPL
Sbjct: 506 SETRKKVCEDLNMLESKKLKNPWKKHGNIPL 536
>gi|4557044 propionyl Coenzyme A carboxylase, beta polypeptide [Homo sapiens]
>gi|1709602|sp|P05166|PCCB_HUMAN PROPIONYL-COA
CARBOXYLASE BETA CHAIN, MITOCHONDRIAL PRECURSOR (PCCASE
BETA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE LIGASE BETA
SUBUNIT) >gi|312812|emb|CAA51825.1| (X73424)
propionyl-CoA carboxylase [Homo sapiens]
Length = 539
Score = 555 bits (1415), Expect = e-157
Identities = 292/517 (56%), Positives = 362/517 (69%), Gaps = 16/517 (3%)
Query: 8 EDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGM- 66
E + +R+ L GG+ I QH +GKLTARERI LLLDPGSFVE MFV+HR +FGM
Sbjct: 37 ERIENKRRTALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFVESDMFVEHRCADFGMA 96
Query: 67 -DKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
DK P D V+TG G INGRLV+V++QDFTV GGSL HA KI +IM+ A+ GAPVI
Sbjct: 97 ADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVI 156
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
GLNDSGGARIQEGV+SL GY +IF N SGV+PQI+ IMGPCAGGAVYSPA+ DF M
Sbjct: 157 GLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFM 216
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
V + S ++FITGP VVK+VT DVT +LGGA H SG AH ++D + + ++
Sbjct: 217 VKDTS-YLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDFF 275
Query: 246 SYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFL 305
+YLP ++ + + D R PEL IVP + KAY++ +I+++VD E F
Sbjct: 276 NYLPLSSQDPASVRECHDPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDERE-----FF 330
Query: 306 ELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVT 365
E+ P +A N ++GF R+NG+TVGIV N P +G LDI+SS K ARFVRFCDAFNIP++T
Sbjct: 331 EIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLIT 390
Query: 366 FVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGAD 425
FVDVPG+LPG QE GIIRHGAK+LYA+AEATVP VTVI RKAYGGAY M SKHL D
Sbjct: 391 FVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGD 450
Query: 426 FVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYI 485
+AWPTAEIAVMG +GA IIF+ EN E + EY EKFANP+ AA RG++
Sbjct: 451 TNYAWPTAEIAVMGAKGAVEIIFKGH----ENVEAAQ----AEYIEKFANPFPAAVRGFV 502
Query: 486 DDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
DD+I P+ TRA+I L+ L +K+V+ P +KH NIPL
Sbjct: 503 DDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 539
>gb|AAD13544.1| (AF080235) decarboxylase homolog [Streptomyces cyanogenus]
Length = 524
Score = 554 bits (1412), Expect = e-157
Identities = 282/519 (54%), Positives = 361/519 (69%), Gaps = 6/519 (1%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRAT 62
+ +++++L + +++ + A ++QH KGKLTA ERIELLLD SF E+ +HRA
Sbjct: 11 IQDRLDELRELKRQAREGLDPSATERQHAKGKLTAYERIELLLDEDSFNEVEPLRRHRAQ 70
Query: 63 EFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGA 122
FG++ + DGVITG+GT+ GR VFVYA DF + GG+LGE HA KI +IM++AL AGA
Sbjct: 71 GFGLEAKKPYTDGVITGWGTVEGRTVFVYAHDFRIFGGALGEAHATKIHKIMDMALSAGA 130
Query: 123 PVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDF 182
P++ LND GARIQEGV +L GYG IF+ NT SGV+PQI+ ++GPCAGGA YSPA+ DF
Sbjct: 131 PLVSLNDGAGARIQEGVTALAGYGGIFQRNTKASGVIPQISVMLGPCAGGAAYSPALTDF 190
Query: 183 ILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIK 242
+ MV S MFITGP VVKAVTG ++T LGGA VHA SG AH +E + ++
Sbjct: 191 VFMVRETSQ-MFITGPDVVKAVTGEEITQNGLGGADVHAGTSGVAHFAYDDEESCLQEVR 249
Query: 243 RLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNP 302
LLS LP+NN E P D R T L +VP D ++YD+R VI IVD E+
Sbjct: 250 FLLSLLPANNRELAPVEDSGDPAERLTEALLTLVPADSGRSYDIRAVIEEIVDGGEH--- 306
Query: 303 DFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIP 362
E+ P + N V R++G VGIVAN P +AGVLDI+SS+K ARFV+FCDAFNIP
Sbjct: 307 --FEVHPAWGANLVCALARLDGHVVGIVANQPTVMAGVLDIESSEKGARFVQFCDAFNIP 364
Query: 363 IVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHL 422
+VT VDVPG+LPGVDQE GIIR GAK+LYAY ATVP V+++LRKAYGGAY+ M S+ +
Sbjct: 365 LVTLVDVPGFLPGVDQEHSGIIRRGAKLLYAYCNATVPRVSLVLRKAYGGAYIVMDSRSI 424
Query: 423 GADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASR 482
GAD AWPT EIAVMG EGAAN+IFR+EI +++PE R+Q+I+EYR + +PY A R
Sbjct: 425 GADLALAWPTNEIAVMGAEGAANVIFRREINASDDPESVRRQRIKEYRTELMHPYYGAER 484
Query: 483 GYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIP 521
G IDDVIDP +TR ++ +L L K LP +KHGN P
Sbjct: 485 GLIDDVIDPRDTRRVLIRSLAMLRAKHADLPSRKHGNPP 523
>pir||A53020 propionyl-CoA carboxylase (EC 6.4.1.3) beta chain precursor - human
>gi|455713|gb|AAB28900.1| (S67325) propionyl CoA
carboxylase beta subunit, beta PCC {EC 6.4.1.3} [human,
liver, placenta, HL 1008, Peptide, 539 aa] [Homo
sapiens]
Length = 539
Score = 553 bits (1409), Expect = e-156
Identities = 291/517 (56%), Positives = 361/517 (69%), Gaps = 16/517 (3%)
Query: 8 EDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGM- 66
E + +R+ L GG+ I +GKLTARERI LLLDPGSFVE MFV+HR +FGM
Sbjct: 37 ERIENKRRTALLGGGQRRIDAHDKRGKLTARERISLLLDPGSFVESDMFVEHRCADFGMA 96
Query: 67 -DKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
DK P D V+TG G INGRLV+V++QDFTV GGSL HA KI +IM+ A+ GAPVI
Sbjct: 97 ADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVI 156
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
GLNDSGGARIQEGV+SL GY +IF N SGV+PQI+ IMGPCAGGAVYSPA+ DF M
Sbjct: 157 GLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFM 216
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
V + S ++FITGP VVK+VT DVT +LGGA H SG AH ++D + + ++
Sbjct: 217 VKDTS-YLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCNLRDFF 275
Query: 246 SYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFL 305
+YLP ++ + P + D R PEL IVP + KAY++ +I+++VD E F
Sbjct: 276 NYLPLSSQDPAPVRECHDPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDERE-----FF 330
Query: 306 ELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVT 365
E+ P +A N ++GF R+NG+TVGIV N P +G LDI+SS K ARFVRFCDAFNIP++T
Sbjct: 331 EIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLIT 390
Query: 366 FVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGAD 425
FVDVPG+LPG QE GIIRHGAK+LYA+AEATVP VTVI RKAYGGAY M SKHL D
Sbjct: 391 FVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVMSSKHLCGD 450
Query: 426 FVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYI 485
+AWPTAEIAVMG +GA IIF+ EN E + EY EKFANP+ AA RG++
Sbjct: 451 TNYAWPTAEIAVMGAKGAVEIIFKGH----ENVEAAQ----AEYIEKFANPFPAAVRGFV 502
Query: 486 DDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
DD+I P+ TRA+I L+ L +K+V+ P +KH NIPL
Sbjct: 503 DDIIQPSSTRARICCDLDVLASKKVQRPWRKHANIPL 539
>pir||A70980 probable accD5 protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1877335|emb|CAB07063.1| (Z92771) accD5
[Mycobacterium tuberculosis]
Length = 548
Score = 552 bits (1408), Expect = e-156
Identities = 284/528 (53%), Positives = 364/528 (68%), Gaps = 18/528 (3%)
Query: 6 KVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFG 65
K+ +L++RR++ L GE+A++K H KGKLTARERI LLD SFVE+ KHR+T F
Sbjct: 28 KLAELHKRREESLHPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHRSTNFN 87
Query: 66 MDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
+ ++ DGV+TGYGTI+GR V +++QD TV GGSLGE++ KI ++ ELA++ G P+I
Sbjct: 88 LGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLI 147
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
G+ND GARIQEGV SL Y IF+ N + SGV+PQI+ IMG AGG VYSPA+ DF++M
Sbjct: 148 GINDGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIM 207
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
VD S MFITGP V+K VTG +VT +LGGA H KSG AH +++ ++ LL
Sbjct: 208 VDQTSQ-MFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELL 266
Query: 246 SYLPSNNMEKPPRVK------PKDEPFRRTP-ELYDIVPDDPNKAYDVRQVIYAIVDRDE 298
SYLP NN PR + P +E EL ++PD PN+ YD+ +VI ++D
Sbjct: 267 SYLPPNNSTDAPRYQAAAPTGPIEENLTDEDLELDTLIPDSPNQPYDMHEVITRLLD--- 323
Query: 299 NGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDA 358
+FLE+Q +A N V+GFGRI+G+ VGIVAN P H AG LDI++S+K ARFVR CD
Sbjct: 324 ---DEFLEIQAGYAQNIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDC 380
Query: 359 FNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMG 418
FNIPIV VDVPG+LPG DQE GIIR GAK+LYAY EATVP +TVI RKAYGGAY MG
Sbjct: 381 FNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMG 440
Query: 419 SKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKA----ENPEEFRKQKIQEYREKFA 474
SK +G D AWPTA+IAVMG GA ++R+++A+A E+ ++ R + QEY +
Sbjct: 441 SKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLV 500
Query: 475 NPYVAASRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
NPYVAA RGY+D VI P+ TR I AL LE K +LPPKKHGN+PL
Sbjct: 501 NPYVAAERGYVDAVIPPSHTRGYIGTALRLLERKIAQLPPKKHGNVPL 548
>sp|P54541|PCCB_BACSU PUTATIVE PROPIONYL-COA CARBOXYLASE BETA CHAIN (PCCASE)
(PROPANOYL-COA:CARBON DIOXIDE LIGASE)
>gi|7438115|pir||D69963 propionyl-CoA carboxylase
homolog yqjD - Bacillus subtilis
>gi|1303955|dbj|BAA12610.1| (D84432) YqjD [Bacillus
subtilis] >gi|2634826|emb|CAB14323.1| (Z99116) similar
to propionyl-CoA carboxylase [Bacillus subtilis]
Length = 506
Score = 551 bits (1404), Expect = e-156
Identities = 281/511 (54%), Positives = 366/511 (70%), Gaps = 13/511 (2%)
Query: 12 QRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGMDKRDL 71
+ RK+ + GG E + +Q KGKLTARERI LLD SF+E+ F++ + ++ +
Sbjct: 9 RNRKQAEEGGGREKLAQQRQKGKLTARERIIFLLDQDSFIELHPFMESQVLT---REQRM 65
Query: 72 PADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSG 131
DGV+TGYGTI+GR V+V+AQDFTV GG+LGE HA KI +M+LA + AP+IGLNDSG
Sbjct: 66 LGDGVVTGYGTIDGRSVYVFAQDFTVYGGALGETHARKICALMDLAAKNKAPIIGLNDSG 125
Query: 132 GARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILMVDNPST 191
GARIQEGV SL GYG IF N + SGV+PQI+ I+GPCAGGAVYSPA+ DFI M +
Sbjct: 126 GARIQEGVLSLDGYGHIFYRNVLYSGVIPQISVILGPCAGGAVYSPALTDFIFMAEQTGR 185
Query: 192 FMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSN 251
MFITGP+V++ VTG V LGGA +H SG AH G +++EV+ +++LLSYLP N
Sbjct: 186 -MFITGPKVIEKVTGEQVDAESLGGAGIHNAVSGNAHFSGHTEKEVLTGVRKLLSYLPLN 244
Query: 252 NMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYF 311
P KP+ E R P L +VP D K YDVR+VI + D F E+QP+F
Sbjct: 245 GRTTEP--KPEKEASR--PLLNRLVPADTTKPYDVRKVIRELADPQS-----FFEIQPFF 295
Query: 312 APNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPG 371
A N VIGF R+ + +GIVA+ P HLAG L ID++DK ARF+RFCDAF+IP++T DVPG
Sbjct: 296 AKNIVIGFARLGEKAIGIVASQPKHLAGSLTIDAADKAARFIRFCDAFDIPLLTVEDVPG 355
Query: 372 YLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADFVFAWP 431
+LPG+ QE GIIRHGAK+L+AYAEATVP VT+I+RKAYGGAY+AM SK +GAD VFAWP
Sbjct: 356 FLPGIQQEHNGIIRHGAKLLFAYAEATVPKVTLIIRKAYGGAYVAMNSKAIGADLVFAWP 415
Query: 432 TAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYIDDVIDP 491
AEIAVMGPEGAA+I++ KEI + +P++ +++K EY+++ A PY AA+ G +DD+I P
Sbjct: 416 NAEIAVMGPEGAASILYEKEIKASADPQKTKREKTAEYKKQNAGPYKAAACGMVDDIILP 475
Query: 492 AETRAKIVMALEALENKRVKLPPKKHGNIPL 522
E+R +++ A L +K + P KKHGNIPL
Sbjct: 476 EESRGRLIQAFHMLTHKTEERPKKKHGNIPL 506
>gi|8393913 propionyl Coenzyme A carboxylase, beta polypeptide [Rattus
norvegicus] >gi|129686|sp|P07633|PCCB_RAT PROPIONYL-COA
CARBOXYLASE BETA CHAIN, MITOCHONDRIAL PRECURSOR (PCCASE
BETA SUBUNIT) (PROPANOYL-COA:CARBON DIOXIDE LIGASE BETA
SUBUNIT) >gi|92655|pir||A25516 propionyl-CoA carboxylase
(EC 6.4.1.3) beta chain precursor - rat
>gi|206042|gb|AAA41818.1| (M14634) prepropionyl-CoA
carboxylase (EC 6.4.1.3) [Rattus norvegicus]
Length = 541
Score = 550 bits (1403), Expect = e-155
Identities = 288/519 (55%), Positives = 362/519 (69%), Gaps = 20/519 (3%)
Query: 8 EDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGM- 66
E + +R L GG+ I QH +GKLTARERI LLLDPGSF+E MFV+HR +FGM
Sbjct: 39 ERIENKRHAALLGGGQRRIDAQHKRGKLTARERISLLLDPGSFLESDMFVEHRCADFGMA 98
Query: 67 -DKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
+K P D V+TG G INGRLV+V++QDFTV GGSL HA KI +IM+ A+ GAPVI
Sbjct: 99 AEKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVI 158
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
GLNDSGGARIQEGV+SL GY +IF N SGV+PQI+ IMGPCAGGAVYSPA+ DF M
Sbjct: 159 GLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGAVYSPALTDFTFM 218
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
V + S ++FITGP+ VK+VT DVT QLGGA H SG AH +D + + ++ L
Sbjct: 219 VKDTS-YLFITGPEFVKSVTNEDVTQEQLGGAKTHTTVSGVAHRAFDNDVDALCNLREFL 277
Query: 246 SYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFL 305
++LP +N + + D R PEL +VP + +KAY++ +I+A++D E F
Sbjct: 278 NFLPLSNQDPASIRECHDPSDRLVPELDTVVPLESSKAYNMLDIIHAVIDERE-----FF 332
Query: 306 ELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVT 365
E+ P +A N VIGF R+NG+TVGIV N P +G LDI+SS K ARFVRFCDAF+IP++T
Sbjct: 333 EIMPNYAKNIVIGFARMNGRTVGIVGNQPNVASGCLDINSSVKGARFVRFCDAFSIPLIT 392
Query: 366 FVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGAD 425
FVDVPG+LPG QE GIIRHGAK+LYA+AEATVP +TVI RKAYGGAY M SKHL D
Sbjct: 393 FVDVPGFLPGTAQEYGGIIRHGAKLLYAFAEATVPKITVITRKAYGGAYDVMSSKHLLGD 452
Query: 426 FVFAWPTAEIAVMGPEGAANIIFR--KEIAKAENPEEFRKQKIQEYREKFANPYVAASRG 483
+AWPTAEIAVMG +GA IIF+ +++ A+ EY EKFANP+ AA RG
Sbjct: 453 TNYAWPTAEIAVMGAKGAVEIIFKGHEDVEAAQ----------AEYVEKFANPFPAAVRG 502
Query: 484 YIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
++DD+I P+ TRA+I LE L +K+V P +KH N+PL
Sbjct: 503 FVDDIIQPSSTRARICCDLEVLASKKVHRPWRKHANVPL 541
>sp|P53002|PCCB_MYCLE PROBABLE PROPIONYL-COA CARBOXYLASE BETA CHAIN (PCCASE)
(PROPANOYL-COA:CARBON DIOXIDE LIGASE)
>gi|466841|gb|AAA85917.1| (U00012) pccB; B1308_C1_125
[Mycobacterium leprae]
Length = 549
Score = 550 bits (1401), Expect = e-155
Identities = 283/528 (53%), Positives = 360/528 (67%), Gaps = 17/528 (3%)
Query: 6 KVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFG 65
K+ +L++R ++ L G A +K H KGK TARERI LLD SFVE+ +HR+T FG
Sbjct: 28 KLAELHKRTEEALHPVGAAAFEKVHAKGKFTARERIYALLDDDSFVELDALARHRSTNFG 87
Query: 66 MDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
+ + DGV+TGYGTI+GR V +++QD TV GGSLGE++ KI ++ ELA++ G P+I
Sbjct: 88 LGENRPVGDGVVTGYGTIDGRDVCIFSQDVTVFGGSLGEVYGEKIVKVQELAIKTGRPLI 147
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
G+ND GARIQEGV SL Y IF+ N + SGV+PQI+ IMG AGG VYSPA+ DF++M
Sbjct: 148 GINDGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVVM 207
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
VD S MFITGP V+K VTG DVT +LGGA H KSG AH + +++ ++ +L
Sbjct: 208 VDQTSQ-MFITGPDVIKTVTGEDVTMEELGGAHTHMAKSGTAHYVASGEQDAFDWVRDVL 266
Query: 246 SYLPSNNMEKPPRV-KP------KDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDE 298
SYLPSNN PR KP +D + EL ++PD PN+ YD+ +V+ ++D +E
Sbjct: 267 SYLPSNNFTDAPRYSKPVPHGSIEDNLTAKDLELDTLIPDSPNQPYDMHEVVTRLLDEEE 326
Query: 299 NGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDA 358
FLE+Q +A N V+G GRI+ + VGIVAN PI AG LDI++S+K ARFVR CD
Sbjct: 327 -----FLEVQAGYATNIVVGLGRIDDRPVGIVANQPIQFAGCLDINASEKAARFVRVCDC 381
Query: 359 FNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMG 418
FNIPIV VDVPG+LPG +QE GIIR GAK+L+AY EATVP +TVI RKAYGGAY MG
Sbjct: 382 FNIPIVMLVDVPGFLPGTEQEYDGIIRRGAKLLFAYGEATVPKITVITRKAYGGAYCVMG 441
Query: 419 SKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKA----ENPEEFRKQKIQEYREKFA 474
SK++G D AWPTA+IAVMG GA ++RKE+A+A N +E R Q QEY +
Sbjct: 442 SKNMGCDVNLAWPTAQIAVMGASGAVGFVYRKELAQAAKNGANVDELRLQLQQEYEDTLV 501
Query: 475 NPYVAASRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
NPY+AA RGY+D VI P+ TR I AL LE K LPPKKHGNIPL
Sbjct: 502 NPYIAAERGYVDAVIPPSHTRGYIATALHLLERKIAHLPPKKHGNIPL 549
>dbj|BAA33850.1| (AB018531) dtsR2 [Corynebacterium glutamicum]
Length = 537
Score = 538 bits (1371), Expect = e-152
Identities = 282/528 (53%), Positives = 355/528 (66%), Gaps = 17/528 (3%)
Query: 6 KVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFG 65
K+ DL R + GE ++K H G+ TARERIE LLD GSFVEI +HR+ FG
Sbjct: 16 KLSDLRSRLAEAQAPMGEATVEKVHAAGRKTARERIEYLLDEGSFVEIDALARHRSKNFG 75
Query: 66 MDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
+D + DGV+TGYGTI+GR V V++QD V GG+LGE++ KI ++M+LA++ G P+I
Sbjct: 76 LDAKRPATDGVVTGYGTIDGRKVCVFSQDGAVFGGALGEVYGEKIVKVMDLAIKTGVPLI 135
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
G+N+ GARIQEGV SL Y +IF NT SGV+PQI+ IMG CAGG VYSPA+ DFI+M
Sbjct: 136 GINEGAGARIQEGVVSLGLYSQIFYRNTQASGVIPQISLIMGACAGGHVYSPALTDFIVM 195
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
VD S MFITGP V+K VTG DVT +LGGA H SG +H D + + ++ L
Sbjct: 196 VDQTSK-MFITGPDVIKTVTGEDVTQEELGGAHTHMATSGTSHYSASDDSDALDWVRELT 254
Query: 246 SYLPSNNMEKPPRVKPK------DEPFRRTP-ELYDIVPDDPNKAYDVRQVIYAIVDRDE 298
SYLPSNN + PR + E EL I+PD PN+ YD+++VI IVD
Sbjct: 255 SYLPSNNRAETPRQEADIMIGSIQENINDVDLELDTIIPDSPNQPYDMKEVISRIVD--- 311
Query: 299 NGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDA 358
+ +F E+Q +A N + GF R+ G++VGIVAN P AG LDI +S+K ARF+R CDA
Sbjct: 312 --DAEFFEIQEDYAENILCGFARVEGRSVGIVANQPTQFAGCLDIKASEKAARFIRTCDA 369
Query: 359 FNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMG 418
FNIPI+ FVDVPG+LPG +QE GIIR GAK+LYAYAEATV +TVI RK+YGGAY MG
Sbjct: 370 FNIPILEFVDVPGFLPGTNQEFDGIIRRGAKLLYAYAEATVGKITVITRKSYGGAYCVMG 429
Query: 419 SKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKA----ENPEEFRKQKIQEYREKFA 474
SK +GAD VFAWPTA+IAVMG GA I+RKE+ +A ++ E K QEY E
Sbjct: 430 SKDMGADLVFAWPTAQIAVMGASGAVGFIYRKELKQAATEGKDVAEVMKGYEQEYEETLV 489
Query: 475 NPYVAASRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
NPYVAA RG +D VI P+ETR +I+ L L+ K V +P KKHGNIPL
Sbjct: 490 NPYVAAERGLVDAVIPPSETRGQIIEGLRLLDRKVVNVPAKKHGNIPL 537
>pir||JC4991 detergent sensitivity rescuer - Corynebacterium glutamicum
>gi|3767579|dbj|BAA33848.1| (AB018530) dtsR
[Corynebacterium glutamicum] >gi|3767581|dbj|BAA33849.1|
(AB018531) dtsR1 [Corynebacterium glutamicum]
Length = 543
Score = 501 bits (1276), Expect = e-141
Identities = 267/529 (50%), Positives = 342/529 (64%), Gaps = 19/529 (3%)
Query: 6 KVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFG 65
K+ DL RR + GE+A++K H G+LTARER++ LLD GSF+E +HR T FG
Sbjct: 22 KIADLKARRAEAHFPMGEKAVEKVHAAGRLTARERLDYLLDEGSFIETDQLARHRTTAFG 81
Query: 66 MDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
+ + DG++TG+GTI+GR V +++QD TV GG+LGE++ K+ +IMELA++ G P+I
Sbjct: 82 LGAKRPATDGIVTGWGTIDGREVCIFSQDGTVFGGALGEVYGEKMIKIMELAIDTGRPLI 141
Query: 126 GLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILM 185
GL + GARIQ+G SL + F N SGV+PQI+ IMG CAGG Y PA+ DF++M
Sbjct: 142 GLYEGAGARIQDGAVSLDFISQTFYQNIQASGVIPQISVIMGACAGGNAYGPALTDFVVM 201
Query: 186 VDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL 245
VD S MF+TGP V+K VTG ++T +LGGA H +G +H +DEE + ++ L+
Sbjct: 202 VDKTSK-MFVTGPDVIKTVTGEEITQEELGGATTHMVTAGNSHYTAATDEEALDWVQDLV 260
Query: 246 SYLPSNNMEKPPRVKPKDEPFRRTPE--------LYDIVPDDPNKAYDVRQVIYAIVDRD 297
S+LPSNN P ++ DE E L +I+PD YDVR VI + D
Sbjct: 261 SFLPSNNRSYTP-LEDFDEEEGGVEENITADDLKLDEIIPDSATVPYDVRDVIECLTDDG 319
Query: 298 ENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCD 357
E +LE+Q A N VI FGRI GQ+VG VAN P AG LDIDSS+K ARFVR CD
Sbjct: 320 E-----YLEIQADRAENVVIAFGRIEGQSVGFVANQPTQFAGCLDIDSSEKAARFVRTCD 374
Query: 358 AFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAM 417
AFNIPIV VDVPG+LPG QE GI+R GAK+LYAY EATVP +TV +RKAYGGAY M
Sbjct: 375 AFNIPIVMLVDVPGFLPGAGQEYGGILRRGAKLLYAYGEATVPKITVTMRKAYGGAYCVM 434
Query: 418 GSKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEI----AKAENPEEFRKQKIQEYREKF 473
GSK LG+D AWPTA+IAVMG GA I+RKE+ AK + K +EY +
Sbjct: 435 GSKGLGSDINLAWPTAQIAVMGAAGAVGFIYRKELMAADAKGLDTVALAKSFEREYEDHM 494
Query: 474 ANPYVAASRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
NPY AA RG ID VI P+ETR +I L L++K V P +KHGN+PL
Sbjct: 495 LNPYHAAERGLIDAVILPSETRGQISRNLRLLKHKNVTRPARKHGNMPL 543
>pir||A48665 methylmalonyl-CoA carboxyltransferase (EC 2.1.3.1) 12S chain -
Propionibacterium freudenreichii subsp. shermanii
>gi|150933|gb|AAA25676.1| (L04196) methylmalonyl-CoA
carboxyltransferase subunit 12S monomer
[Propionibacterium freudenreichii subsp. shermanii]
Length = 605
Score = 450 bits (1146), Expect = e-125
Identities = 265/520 (50%), Positives = 331/520 (62%), Gaps = 14/520 (2%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRAT 62
M +VE L ++R+ I GGE ++KQH +GK TARER+ LLDP SF E+G F KHR T
Sbjct: 13 MEGRVEQLAEQRQVIEAGGGERLVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTT 72
Query: 63 EFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGA 122
FGMDK +PADGV+TG GTI GR V +QDFTVMGGS + +R AL G
Sbjct: 73 LFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAWRDAVHEGRRDDGTALLTGT 132
Query: 123 PVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDF 182
P + DSGG RIQEG+DSL GYG++F N LSGVVPQI I GPCA A YSPA+ DF
Sbjct: 133 PFLFFYDSGG-RIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCA-CASYSPALTDF 190
Query: 183 ILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIK 242
I+M MFITGPQV+K+VTG DVT +LGGA S + + + D+ + K
Sbjct: 191 IIM--TKKAHMFITGPQVIKSVTGEDVTADELGGA-EPIWPSRAIYFVAEDDDAAELIAK 247
Query: 243 RLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNP 302
+LLS+LP NN E+ V P ++ T EL DIVP D K YDVR VI IVD
Sbjct: 248 KLLSFLPQNNTEEASFVNPNNDVSPNT-ELRDIVPIDGKKGYDVRDVIAKIVDWG----- 301
Query: 303 DFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIP 362
D+LE++ +A N V F R+NG++VGIVAN P ++G LDI++SDK A FV FCD+FNIP
Sbjct: 302 DYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIP 361
Query: 363 IVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHL 422
+V VDVPG+LP V QE GIIRHG K+LYAY+EATVP +T + + + L
Sbjct: 362 LVQLVDVPGFLP-VQQEYGGIIRHGRKMLYAYSEATVPKITCLATPTAAPTW-PCATVTL 419
Query: 423 GADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASR 482
P+AEIAVMG EGAAN+IFRKEI A++P+ R +KI+EY + + +R
Sbjct: 420 VPTPCTPVPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEY-QNGSTRRTWRAR 478
Query: 483 GYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
G +DDVIDPA+TR KI ALE KR P KK +PL
Sbjct: 479 GQVDDVIDPADTRRKIASALEMYATKRQTRPAKKPWKLPL 518
>pir||C70887 probable Propionyl-CoA carboxylase - Mycobacterium tuberculosis
(strain H37RV) >gi|2950418|emb|CAA17863.1| (AL022076)
accD4 [Mycobacterium tuberculosis]
Length = 518
Score = 439 bits (1118), Expect = e-122
Identities = 234/509 (45%), Positives = 325/509 (62%), Gaps = 15/509 (2%)
Query: 5 EKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEF 64
EK+ +L +R + + GGE+A K+ KG +AR RI L+DPGSF+EIG +
Sbjct: 13 EKLAELRERLELAKEPGGEKAAAKRDKKGIPSARARIYELVDPGSFMEIGALCRTPG--- 69
Query: 65 GMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPV 124
D L DGV+TG+G INGR V V++ D TV GG++GEM K+ R+ME G P+
Sbjct: 70 --DPNALYGDGVVTGHGLINGRPVGVFSHDQTVFGGTVGEMFGRKVARLMEWCAMVGCPI 127
Query: 125 IGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFIL 184
+G+NDSGGARIQ+ V SL Y E+ + + +LSG+VPQI+ I+G CAGGAVYSP D ++
Sbjct: 128 VGINDSGGARIQDAVTSLAWYAELGRRHELLSGLVPQISIILGKCAGGAVYSPIQTDLVV 187
Query: 185 MVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRL 244
V + +MF+TGP V+K VTG DV+ +LGGA H G H + +S+ ++
Sbjct: 188 AVRDQG-YMFVTGPDVIKDVTGEDVSLDELGGA-DHQASYGNIHQVVESEAAAYQYVRDF 245
Query: 245 LSYLPSNNMEKPPRVKPKDEP--FRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNP 302
LS+LPSN +KPP V P EP EL IVPD N AYD+ +V+ I D +
Sbjct: 246 LSFLPSNCFDKPPVVNPGLEPEITGHDLELDSIVPDSDNMAYDMHEVLLRIFD-----DG 300
Query: 303 DFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIP 362
DFL++ + G+ R++G+TVG+VAN P+H++G +D ++SDK ARF+RF DAF+IP
Sbjct: 301 DFLDVAAQAGQAIITGYARVDGRTVGVVANQPMHMSGAIDNEASDKAARFIRFSDAFDIP 360
Query: 363 IVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHL 422
+V VD PG+LPGV+QE GII+ G + LYA EA VP VT+ +RK+YGGAY MGSK L
Sbjct: 361 LVFVVDTPGFLPGVEQEKNGIIKRGGRFLYAVVEADVPKVTITIRKSYGGAYAVMGSKQL 420
Query: 423 GADFVFAWPTAEIAVMGPEGAANIIFRK-EIAKAENPEEFRKQKIQEYREKFANPYVAAS 481
AD FAWPTA IAV+G +GAA ++ ++ A + RK ++ Y A P++AA
Sbjct: 421 TADLNFAWPTARIAVIGADGAAQLLMKRFPDPNAPEAQAIRKSFVENYNLNMAIPWIAAE 480
Query: 482 RGYIDDVIDPAETRAKIVMALEALENKRV 510
RG+ID VIDP ETR + ++ L +K++
Sbjct: 481 RGFIDAVIDPHETRLLLRKSMHLLRDKQL 509
>sp|Q10506|PCCB_MYCTU PROBABLE PROPIONYL-COA CARBOXYLASE BETA CHAIN (PCCASE)
(PROPANOYL-COA:CARBON DIOXIDE LIGASE)
>gi|7438117|pir||C70779 probable accD6 protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|3261571|emb|CAA94668.1| (Z70692) accD6
[Mycobacterium tuberculosis]
Length = 473
Score = 351 bits (891), Expect = 1e-95
Identities = 196/491 (39%), Positives = 290/491 (58%), Gaps = 23/491 (4%)
Query: 35 LTARERIELLLDPGS-FVEIGMFVKHRATEFGMDKRDLPADGVITGYGTINGRLVFVYAQ 93
+ A E + LDP + + F + E + +RD GV+ GT+NG +
Sbjct: 3 IMAPEAVGESLDPRDPLLRLSNFFDDGSVEL-LHERD--RSGVLAAAGTVNGVRTIAFCT 59
Query: 94 DFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNT 153
D TVMGG++G I + A+E +P++G+ SGGAR+ EGV +L G++F+
Sbjct: 60 DGTVMGGAMGVEGCTHIVNAYDTAIEDQSPIVGIWHSGGARLAEGVRALHAVGQVFEAMI 119
Query: 154 ILSGVVPQITAIMGPCAGGAVYSPAIGDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQ 213
SG +PQI+ ++G AGGA Y PA+ D ++M P + +F+TGP VV++VTG DV
Sbjct: 120 RASGYIPQISVVVGFAAGGAAYGPALTDVVVMA--PESRVFVTGPDVVRSVTGEDVDMAS 177
Query: 214 LGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELY 273
LGG H +KSG H++ + + +RL+ + + D +++
Sbjct: 178 LGGPETHHKKSGVCHIVADDELDAYDRGRRLVGLFCQQGHFDRSKAEAGDT------DIH 231
Query: 274 DIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANN 333
++P+ +AYDVR ++ AI+D D F E Q +AP+ V+G GR++G+TVG++ANN
Sbjct: 232 ALLPESSRRAYDVRPIVTAILDADT----PFDEFQANWAPSMVVGLGRLSGRTVGVLANN 287
Query: 334 PIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYA 393
P+ L G L+ +S++K ARFVR CDAF IP+V VDVPGYLPGVDQE G++R GAK+L+A
Sbjct: 288 PLRLGGCLNSESAEKAARFVRLCDAFGIPLVVVVDVPGYLPGVDQEWGGVVRRGAKLLHA 347
Query: 394 YAEATVPMVTVILRKAYGGAYLAMGSKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIA 453
+ E TVP VT++ RK YGGAY+AM S+ L A VFAWP AE+AVMG + A I+ +K++A
Sbjct: 348 FGECTVPRVTLVTRKTYGGAYIAMNSRSLNATKVFAWPDAEVAVMGAKAAVGILHKKKLA 407
Query: 454 KA-ENPEEFRKQKIQEYREKFANPYVAA-SRGYIDDVIDPAETRAKIVMALEALENKRVK 511
A E+ E ++ E+ A +A G +D+ IDPA TR+K+ AL +R
Sbjct: 408 AAPEHEREALHDQLAAEHERIAGGVDSALDIGVVDEKIDPAHTRSKLTEALAQAPARR-- 465
Query: 512 LPPKKHGNIPL 522
+H NIPL
Sbjct: 466 ---GRHKNIPL 473
>pir||T44709 acetyl/propionyl CoA carboxylase [imported] - Mycobacterium leprae
>gi|3150227|emb|CAA19199.1| (AL023635) Acetyl/Propionyl
CoA Carboxylase [Mycobacterium leprae]
Length = 473
Score = 344 bits (872), Expect = 2e-93
Identities = 186/450 (41%), Positives = 268/450 (59%), Gaps = 19/450 (4%)
Query: 75 GVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGAR 134
GV GT+NG + D TVMGG++G I + A+E +P++G+ SGGAR
Sbjct: 41 GVFAATGTVNGLRTIAFCTDGTVMGGAMGIEGCAHIVNAYDTAIEEQSPIVGIWHSGGAR 100
Query: 135 IQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILMVDNPSTFMF 194
+ EGV +L G++F+ SG +PQI+ ++G AGGA Y PA+ D ++M P +F
Sbjct: 101 LAEGVRALHAVGQVFEAMIRASGYIPQISVVVGFAAGGAAYGPALTDVVIMA--PEGRVF 158
Query: 195 ITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSNNME 254
+TGP VV++VTG DV LGG H +KSG H++ + + +RL+
Sbjct: 159 VTGPDVVRSVTGEDVDMASLGGPETHHKKSGVCHIVANDELDAYERGRRLVGLFCQQGHF 218
Query: 255 KPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYFAPN 314
+ + D + ++P+ +AYDV V+ AI+D N F E Q +AP+
Sbjct: 219 DRSKAEAGDT------NIQALLPESSRRAYDVHPVVTAILDE----NTPFDEFQANWAPS 268
Query: 315 AVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGYLP 374
V+G GR++G+TVG++ANNP+ L G L+ +S++K ARFVR CDAF IP+V VDVPGYLP
Sbjct: 269 MVVGLGRLSGRTVGVLANNPLRLGGCLNSESAEKAARFVRLCDAFGIPLVVIVDVPGYLP 328
Query: 375 GVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADFVFAWPTAE 434
GVDQE G++R GAK+L+A+ E TVP VT++ RK YGGAY+AM S+ L A VFAWP AE
Sbjct: 329 GVDQEWGGVVRRGAKLLHAFGECTVPRVTLVTRKTYGGAYIAMNSRSLNATKVFAWPDAE 388
Query: 435 IAVMGPEGAANIIFRKEIAKAENPE-EFRKQKIQEYREKFANPYVAA-SRGYIDDVIDPA 492
+AVMG + A I+ ++++A A N E E + E+ A +A G +D+ I+PA
Sbjct: 389 VAVMGAKAAVGILHKRKLAAAPNDEREALHDDLAAEHERIAGGVDSAIDIGVVDEKINPA 448
Query: 493 ETRAKIVMALEALENKRVKLPPKKHGNIPL 522
TR+K+ AL +R +H NIPL
Sbjct: 449 HTRSKLTEALAQSPVRR-----GRHKNIPL 473
>pir||B69893 propionyl-CoA carboxylase homolog yngE - Bacillus subtilis
>gi|2634204|emb|CAB13704.1| (Z99113) similar to
propionyl-CoA carboxylase [Bacillus subtilis]
Length = 595
Score = 343 bits (871), Expect = 3e-93
Identities = 205/526 (38%), Positives = 294/526 (54%), Gaps = 22/526 (4%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRAT 62
+M+ ++ +R ++I + G E+ + +KGKL RER+ LL D +E F + +
Sbjct: 86 LMDYEKERTERAERIRKGGAEKYHQSNREKGKLFVRERLSLLFDDDIELEDAFFAECMSD 145
Query: 63 EFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGA 122
LPADGV+T G I G+ V V A D TV GS G KI RI E+A +
Sbjct: 146 -------GLPADGVVTAIGKIGGQTVCVMANDSTVKAGSWGAKTVEKIIRIQEIAEKLNC 198
Query: 123 PVIGLNDSGGARIQEGVDSL---KGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAI 179
P+I L DS GARI + ++ +G G IF LSG +PQI + GP A G Y PA
Sbjct: 199 PLIYLVDSAGARITDQINVFPGRRGAGRIFYNQVKLSGRIPQICLLFGPSAAGGAYIPAF 258
Query: 180 GDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIG 239
D ++MVD ++ M++ P++ + V G V+ ++GGA +H SG ++ +++EE I
Sbjct: 259 CDIVVMVDGNAS-MYLGSPRMAEMVIGEKVSLEEMGGARMHCSISGCGDILAETEEEAIQ 317
Query: 240 LIKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDEN 299
L++ LSY P+N EK P + + TP L D++P + N +D+ ++I ++D D
Sbjct: 318 LVRAYLSYFPANFQEKAPIHEKRPPKHFETP-LADVIPQNQNAPFDMHELIERVIDEDS- 375
Query: 300 GNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAF 359
F E++ FAP + G RI+GQ VGIVAN P GVL DS+DK A+F+ CDAF
Sbjct: 376 ----FFEIKALFAPELLTGLARIHGQPVGIVANQPKVKGGVLFHDSADKAAKFITLCDAF 431
Query: 360 NIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGS 419
+IP++ D+PG++ G E GIIRHGAK++ A +EATVP ++VI+RKAYG AM
Sbjct: 432 HIPLLFLADIPGFMIGTKVEQAGIIRHGAKMISAMSEATVPKLSVIVRKAYGAGLYAMAG 491
Query: 420 KHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKF---ANP 476
D A PTA+IAVMGPE A N ++ K+I AE PEE R I RE++ N
Sbjct: 492 PAFEPDCCLALPTAQIAVMGPEAAVNAVYAKKI--AELPEEERAAFISSKREEYKEDINI 549
Query: 477 YVAASRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
Y AS ID VI R ++ L+A K + +KH P+
Sbjct: 550 YRLASEMIIDAVIPANSLRDELAKRLKAYMTKEMTFTNRKHPVYPV 595
>dbj|BAB04855.1| (AP001511) propionyl-CoA carboxylase [Bacillus halodurans]
Length = 504
Score = 341 bits (866), Expect = 1e-92
Identities = 200/514 (38%), Positives = 290/514 (55%), Gaps = 22/514 (4%)
Query: 15 KKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGMDKRDLPAD 74
+K+ + G E+ + KGKL AR+R+ELL D G E G+F + LPAD
Sbjct: 7 EKLKRGGSEKYHEANQQKGKLFARKRLELLFDDGLAAEDGLFANCQVD-------GLPAD 59
Query: 75 GVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGAR 134
GVITG G ING+ V V A D TV GS G KI RI E A + P++ L DS GAR
Sbjct: 60 GVITGIGKINGQTVCVMANDSTVKAGSWGARTVEKIIRIQETAEKLNVPMLYLVDSAGAR 119
Query: 135 IQEGVDSL---KGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILMVDNPST 191
I + V+ +G G IF LSG VPQ+ + GP A G Y PA D ++MVD ++
Sbjct: 120 ITDQVEMFPGRRGAGRIFYNQVKLSGRVPQVCILFGPSAAGGAYIPAFCDVVIMVDGNAS 179
Query: 192 FMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSN 251
M++ P++ + V G V+ ++GGA +H SG ++ S+EE IGL + L Y PS+
Sbjct: 180 -MYLGSPRMAEMVIGEKVSLEEMGGAKMHCSVSGCGDILAPSEEEAIGLARDYLRYFPSS 238
Query: 252 NMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYF 311
++PP ++ EP T + +I+P + N +++ +I ++D D F E++ F
Sbjct: 239 YSKRPP-IEDGREPKSFTKTIEEILPKNQNAPFNMYDLIDRVIDEDS-----FFEIKKLF 292
Query: 312 APNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPG 371
AP + G RI+G+ +GI+AN P GVL DS+DK A+F+ CDA++IP++ D+PG
Sbjct: 293 APELITGLARIDGKPIGIIANQPKMKGGVLFHDSADKAAKFITLCDAYHIPLLFLADIPG 352
Query: 372 YLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADFVFAWP 431
++ G E GIIRHGAK++ A +EATVP +++I+RKAYG AM D A+P
Sbjct: 353 FMIGTKVERAGIIRHGAKMISAMSEATVPKISIIVRKAYGAGLYAMAGPAFEPDVCLAFP 412
Query: 432 TAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKF---ANPYVAASRGYIDDV 488
A+IAVMGPE A N ++ +I AE PEE R I E RE++ + Y AS ID +
Sbjct: 413 NAQIAVMGPEAAVNAVYANKI--AELPEEERAAFIAEKREEYKQDIDVYRLASELVIDGI 470
Query: 489 IDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
I + R ++ L A +K + +KH P+
Sbjct: 471 IQGNQLREELKTRLTAYASKELTFTTRKHPVYPV 504
>gb|AAG19127.1| (AE005010) propionyl-CoA carboxylase homolog; YngE [Halobacterium
sp. NRC-1]
Length = 591
Score = 332 bits (841), Expect = 8e-90
Identities = 195/539 (36%), Positives = 292/539 (53%), Gaps = 27/539 (5%)
Query: 1 MGMMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERI------------ELLLDPG 48
+G E+ E L + IL G E+ ++ ++ KL R+R+ +LL + G
Sbjct: 60 LGPTEREEVLREEIADILDGGPEKYKQRLPEQDKLFVRDRLALWFGDDDDGDDDLLFEDG 119
Query: 49 SFVEI-GMFVKHRATEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHA 107
F G + D +PADG+ITG +GR + A DFTV GS+ E
Sbjct: 120 RFAHFDGWHPNSPDVDEADDGTRVPADGLITGAADFDGRDLHFMANDFTVKAGSMAERGV 179
Query: 108 MKIKRIMELALEAGAPVIGLNDSGGARIQEGVD---SLKGYGEIFKMNTILSGVVPQITA 164
K R+ + AL+ G PV+ L DS G RI + + +G G+ + ++ LSG VPQI
Sbjct: 180 EKFLRMQQRALKTGKPVLYLMDSSGGRIDQQSGFFANREGIGKYYFNHSRLSGRVPQICV 239
Query: 165 IMGPCAGGAVYSPAIGDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKS 224
+ GPC GA Y+P DF +MV+ S M I P++V+ VTG + LGG VHA++S
Sbjct: 240 LYGPCIAGAAYTPVFADFTIMVEGMSA-MAIASPRMVEMVTGEQIEMQDLGGPQVHAEQS 298
Query: 225 GQAHLIGKSDEEVIGLIKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAY 284
G A L+ + ++ L+ L+ YLP N+ EKPP +P P + + ++P+ PN+AY
Sbjct: 299 GSADLVARDEDHARELVADLVQYLPDNSDEKPPS-QPAKPPAKPPKGIDGLIPEAPNRAY 357
Query: 285 DVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDID 344
D+ +I +VD+D F EL+P + + G+ RI+G+TVGIVAN P AG + D
Sbjct: 358 DMHDLIGRVVDQDS-----FFELRPEYGAEILTGYARIDGRTVGIVANQPAQRAGAIFPD 412
Query: 345 SSDKIARFVRFCDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTV 404
+++K A FV DA+NIP++ D PG++PG E I+ G K++YA +EATVP +V
Sbjct: 413 AAEKAAEFVWKSDAYNIPLLYLCDTPGFMPGSSVEKDAILEKGKKMIYATSEATVPKQSV 472
Query: 405 ILRKAYGGAYLAMGSKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQ 464
++RKAYG AM + A P+ EI +MGPE A N ++ ++ ++PEE RKQ
Sbjct: 473 VVRKAYGAGIYAMSGPAYDPESTIALPSGEIGIMGPEAAINAVYANKLDAIDDPEE-RKQ 531
Query: 465 KIQEYREKFANPYVA---ASRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNI 520
+ QE RE + A AS ID+++ P+E R ++ E+ P KKHG I
Sbjct: 532 REQELREAYREDIDAHRMASETVIDEIVPPSELRTELSNRFSFYEDVEKDRPSKKHGTI 590
>gb|AAF32341.1|AF218939_9 (AF218939) b-propionyl-CoA carboxylase [Bacillus subtilis]
Length = 509
Score = 329 bits (835), Expect = 4e-89
Identities = 200/525 (38%), Positives = 289/525 (54%), Gaps = 22/525 (4%)
Query: 4 MEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATE 63
M+ ++ +R ++I + G E+ + +KGKL RER+ LL D +E F + +
Sbjct: 1 MDYEKERTERAERIQKGGAEKYHRSNQEKGKLFVRERLALLFDDDIELEDAFFAECMSD- 59
Query: 64 FGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAP 123
LPADGV+T G I G+ V A D TV GS G KI RI E A + P
Sbjct: 60 ------GLPADGVVTAIGKIGGQTVCAMANDSTVKAGSWGAKTVEKIIRIQETAEKLNCP 113
Query: 124 VIGLNDSGGARIQEGVDSL---KGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIG 180
+I L DS GARI + V+ +G G IF LSG +PQI + GP A G Y PA
Sbjct: 114 LIYLVDSAGARITDQVNVFPGRRGAGRIFYNQVKLSGRIPQICLLFGPSAAGGAYIPAFC 173
Query: 181 DFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL 240
D ++MVD ++ M++ P++ + V G V+ ++GGA +H SG ++ ++++E I L
Sbjct: 174 DIVVMVDGNAS-MYLGSPRMAEMVIGEKVSLEEMGGARMHCSVSGCGDILAETEQEAIHL 232
Query: 241 IKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENG 300
+ LSY P+N E+ P V+ K P L D++P + N +++ ++I ++D
Sbjct: 233 ARSYLSYFPANYKERAP-VQEKRPPKPFEIPLSDVIPQNQNAPFNMFELIDRVIDEGS-- 289
Query: 301 NPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFN 360
F E++ FAP + G RI+GQ VGI+AN P GVL DS+DK A+F+ CDAF+
Sbjct: 290 ---FFEIKALFAPEIITGLARIHGQPVGIIANQPKVKGGVLFHDSADKAAKFITLCDAFH 346
Query: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSK 420
IP++ D+PG++ G E GIIRHGAK++ A +EATVP ++VI+RKAYG AM
Sbjct: 347 IPLLFLADIPGFMIGTKVEQAGIIRHGAKMISAMSEATVPKLSVIVRKAYGAGLYAMAGP 406
Query: 421 HLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKF---ANPY 477
D A PTA+IAVMGPE A N ++ K+I +E P+E R Q I RE++ N Y
Sbjct: 407 AFEPDCCIALPTAQIAVMGPEAAVNAVYAKKI--SELPKEERAQFISSKREEYKEDINIY 464
Query: 478 VAASRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
AS ID VI R ++ L A K + +KH P+
Sbjct: 465 RLASEMIIDAVIPANSLRGELHKRLMAYMTKEITFTNRKHPVYPV 509
>sp|Q06101|PCCB_RHOER PROPIONYL-COA CARBOXYLASE BETA CHAIN (PCCASE) (PROPANOYL-COA:CARBON
DIOXIDE LIGASE) >gi|484519|pir||JQ1943 propionyl-CoA
carboxylase (EC 6.4.1.3) beta chain - Rhodococcus sp
>gi|152059|gb|AAB80770.1| (M95713) propionyl-CoA
carboxylase beta chain [Rhodococcus erythropolis]
Length = 476
Score = 327 bits (830), Expect = 2e-88
Identities = 176/420 (41%), Positives = 255/420 (59%), Gaps = 25/420 (5%)
Query: 40 RIELLLDPGSFVEIGMFVKHRATEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMG 99
R+E L DPG+ V + DK GV+ G I+G Y D TVMG
Sbjct: 22 RLENLFDPGTTVPL----------HARDK-----SGVLAASGNIDGVRTIAYCSDATVMG 66
Query: 100 GSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVV 159
G++G + + ++ A+E +P++GL SGGAR+ EGV++L G +F+ SG++
Sbjct: 67 GAMGVDGCKHLVKAIDTAIEEESPIVGLWHSGGARLAEGVEALHAVGLVFEAMVRASGLI 126
Query: 160 PQITAIMGPCAGGAVYSPAIGDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALV 219
PQI+ ++G AGGA Y PA+ D ++M P +F+TGP VV++VTG V V LGG
Sbjct: 127 PQISVVLGFAAGGAAYGPALTDVVIMA--PEGRVFVTGPDVVRSVTGEQVDMVSLGGPDT 184
Query: 220 HAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDD 279
H +KSG AH+ + + + +RL+S + + D R ++P
Sbjct: 185 HTKKSGVAHIAAHDEADALHRARRLVSMMCEQGEFDQRAAELGDSDLRA------MMPAS 238
Query: 280 PNKAYDVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAG 339
+AYDVR +++ ++D E G F ELQ +A + V GFGR+ G+TVG++ANNP+ L G
Sbjct: 239 AKRAYDVRPIVHEMLDNVE-GESSFEELQGNYARSIVTGFGRMAGRTVGVIANNPLRL-G 296
Query: 340 VLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATV 399
L+ +S++K ARFVR C+AF +P+V VDVPGYLPGV E G++R GAK+L+A+AEATV
Sbjct: 297 CLNSESAEKAARFVRLCNAFGVPLVVVVDVPGYLPGVSMEWEGVVRRGAKLLHAFAEATV 356
Query: 400 PMVTVILRKAYGGAYLAMGSKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPE 459
P VTV+ RK YGGAY+AM S+ LGA VFAWP +E+AVMG + A I+ ++ +A A + E
Sbjct: 357 PRVTVVTRKIYGGAYIAMNSRALGATAVFAWPNSEVAVMGAKAAVGILHKRALAAAPDDE 416
>sp|P34385|YLP5_CAEEL HYPOTHETICAL 66.5 KD PROTEIN F02A9.5 IN CHROMOSOME III
>gi|280542|pir||S28313 hypothetical protein F02A9.5 -
Caenorhabditis elegans >gi|3875448|emb|CAA79618.1|
(Z19555) predicted using Genefinder~similar to
Propionyl-CoA carboxylase beta chain, contains
similarity to Pfam domain: PF01039 (Carboxyl transferase
domain), Score=826.9, E-value=2.4e-245, N=1~cDNA EST
EMBL:M89018 comes from this gene~cDNA EST yk9b2.>
Length = 608
Score = 287 bits (727), Expect = 2e-76
Identities = 188/527 (35%), Positives = 281/527 (52%), Gaps = 35/527 (6%)
Query: 7 VEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRATEFG 65
VEDL + KI Q GGE+A+K +GK+ ARERI+ ++D GS F+E +
Sbjct: 98 VEDLKAKISKIEQAGGEKAVKLHRSRGKMLARERIDGIVDAGSPFIEFSQLAGYEM---- 153
Query: 66 MDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
K ++P+ G++TG G ++GR+ + A D TV GG+ + K R E+A E P I
Sbjct: 154 YGKEEVPSGGILTGVGIVSGRVCVIVANDATVKGGTYYPITVKKHLRAQEIARENKLPCI 213
Query: 126 GLNDSGGARIQEGVDSL---KGYGEIF-KMNTILSGVVPQITAIMGPCAGGAVYSPAIGD 181
L DSGGA + D + +G IF T+ S +PQ+ +MG C G Y PA+ D
Sbjct: 214 YLVDSGGANLPRQADIFADSQHFGRIFYNQATMSSEGIPQLAVVMGSCTAGGAYVPAMSD 273
Query: 182 FILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLI 241
++V T +F+ GP +VKA TG +++ +LGGA +H +SG +D+ + L
Sbjct: 274 QAIIVKGTGT-VFLGGPPLVKAATGEEISAEELGGADLHCGESGVTDYYAHNDKHALYLA 332
Query: 242 KRLLSYLPSNNMEKPPRVKPK-DEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENG 300
+ ++ LP +E+ P DEP E+Y IV + K YDVR+VI IVD
Sbjct: 333 RSCIAGLPP--VEEHMTFNPNADEPLYPAEEIYGIVGSNLKKTYDVREVIARIVDGSR-- 388
Query: 301 NPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFN 360
F E + + V GF I GQ VGI+ANN GVL +S+ K + F+ C
Sbjct: 389 ---FHEFKERYGETLVTGFATIYGQRVGILANN-----GVLFAESAMKGSHFIELCCQRK 440
Query: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSK 420
IP++ ++ G++ G D E+ GI +HGAK++ A A A VP +TV++ +YG M +
Sbjct: 441 IPLLFLQNITGFMVGRDAEAGGIAKHGAKLVTAVACAKVPKITVLVGGSYGAGNYGMCGR 500
Query: 421 HLGADFVFAWPTAEIAVMGPEGAANII--FRKEIAKAENPE-------EFRKQKIQEYRE 471
+VF WP + I+VMG E AAN++ +KE K E + E RK ++E E
Sbjct: 501 GYSPRYVFMWPNSRISVMGGEQAANVLSTVQKEKKKREGADWTDQQDLELRK-PVEEKFE 559
Query: 472 KFANPYVAASRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHG 518
K +PY A++R + D VIDP +TR + +A ++ K +P K G
Sbjct: 560 KEGHPYFASARLWDDGVIDPKDTRKVLGLAFQSTLQK--PIPETKFG 604
>emb|CAB87213.1| (AL163641) acetyl/propionyl CoA carboxylase, beta subunit
[Streptomyces coelicolor A3(2)]
Length = 538
Score = 283 bits (716), Expect = 4e-75
Identities = 184/501 (36%), Positives = 266/501 (52%), Gaps = 32/501 (6%)
Query: 21 GGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRATEFGMDKRDLPADGVITG 79
GGE A + +GKL R+R++ LLDPGS F+E+ G+ PA GVI G
Sbjct: 43 GGERARARHTARGKLLPRDRVDTLLDPGSPFLELAPLAAD-----GLYDGAAPAAGVIAG 97
Query: 80 YGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARI---Q 136
G ++GR + A D TV GG+ M K R E+ALE P + L DSGGA +
Sbjct: 98 IGRVSGRECVIVANDATVKGGTYYPMTVKKHLRAQEVALENRLPCLYLVDSGGAFLPMQD 157
Query: 137 EGVDSLKGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSPAIGDFILMVDNPSTFMFI 195
E + +G IF +SG +PQI A++G C G Y PA+ D ++V N T +F+
Sbjct: 158 EVFPDREHFGRIFYNQARMSGAGIPQIAAVLGSCTAGGAYVPAMSDEAVIVRNQGT-IFL 216
Query: 196 TGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSNNMEK 255
GP +VKA TG VT +LGG VH++ SG + + D + ++++++S LP
Sbjct: 217 GGPPLVKAATGEVVTAEELGGGEVHSRVSGVTDHLAEDDPHALRIVRQIVSTLPERGA-L 275
Query: 256 PPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYFAPNA 315
P V+ EP +LY +VP D YDVR+VI +VD F E + +
Sbjct: 276 PWGVEAAAEPKADPQDLYGVVPVDSRTPYDVREVIARVVDGSR-----FAEFKSEYGQTL 330
Query: 316 VIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGYLPG 375
V GF RI+G VGIVANN G+L +S+ K A F+ CD IP+V ++ G++ G
Sbjct: 331 VTGFARIHGHPVGIVANN-----GILFSESAQKGAHFIELCDQRGIPLVFLQNISGFMVG 385
Query: 376 VDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADFVFAWPTAEI 435
D E+ GI +HGAK++ A A VP +TV++ +YG +M + F++ WP A+I
Sbjct: 386 RDYEAGGIAKHGAKMVTAVACTRVPKLTVVVGGSYGAGNYSMCGRAYSPRFLWMWPNAKI 445
Query: 436 AVMGPEGAANIIF---------RKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYID 486
+VMG E AA+++ R E AE E F K ++ E+ N Y A +R + D
Sbjct: 446 SVMGGEQAASVLATVKRDQLEGRGEEWPAEEEESF-KAPVRAQYERQGNAYYATARLWDD 504
Query: 487 DVIDPAETRAKIVMALEALEN 507
VI+PA+TR + +AL A N
Sbjct: 505 GVIEPADTRQVLGLALTACAN 525
>gb|AAF35258.1|AF059510_1 (AF059510) 3-methylcrotonyl-CoA carboxylase non-biotinylated
subunit [Arabidopsis thaliana]
>gi|7021224|gb|AAF35259.1|AF059511_1 (AF059511)
3-methylcrotonyl-CoA carboxylase nonbiotinylated subunit
[Arabidopsis thaliana]
Length = 587
Score = 277 bits (701), Expect = 2e-73
Identities = 182/520 (35%), Positives = 265/520 (50%), Gaps = 34/520 (6%)
Query: 7 VEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRATEFG 65
+ +L KK+L GGEEA+K+ + KL RERI+ LLDPGS F+E+ H E
Sbjct: 72 LSELRSHIKKVLAGGGEEAVKRNRSRNKLLPRERIDRLLDPGSSFLELSQLAGHELYE-- 129
Query: 66 MDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
LP+ G+ITG G I+GR+ A D TV GG+ + K R E+A P I
Sbjct: 130 ---EPLPSGGIITGIGPIHGRICMFMANDPTVKGGTYYPITIKKHLRAQEIAARCRLPCI 186
Query: 126 GLNDSGGARIQEGVDSL---KGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSPAIGD 181
L DSGGA + + + + +G +F +++S +PQI ++G C G Y PA+ D
Sbjct: 187 YLVDSGGAYLPKQAEVFPDKENFGRVFYNESVMSSDGIPQIAIVLGSCTAGGAYIPAMAD 246
Query: 182 FILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLI 241
+MV T +F+ GP +VKA TG +V+ LGGA VH SG + + + + +
Sbjct: 247 ESVMVKGNGT-IFLAGPPLVKAATGEEVSAEDLGGATVHCTVSGVSDYFAQDELHGLAIG 305
Query: 242 KRLLSYL---PSNNMEKPPRVKPK--DEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDR 296
+ ++ L ME K EP EL I P D + +DVR +I IVD
Sbjct: 306 RNIVKNLHMAAKQGMEGTFGSKNLVYKEPLYDINELRSIAPVDHKQQFDVRSIIARIVDG 365
Query: 297 DENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFC 356
E F E + + V GF RI GQTVGI+ NN G+L +S+ K A F+ C
Sbjct: 366 SE-----FDEFKKQYGTTLVTGFARIYGQTVGIIGNN-----GILFNESALKGAHFIELC 415
Query: 357 DAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLA 416
IP+V ++ G++ G E+ GI + GAK++ A + A VP +T+I ++G A
Sbjct: 416 SQRKIPLVFLQNITGFMVGSRAEANGIAKAGAKMVMAVSCAKVPKITIITGASFGAGNYA 475
Query: 417 MGSKHLGADFVFAWPTAEIAVMGPEGAANIIF--------RKEIAKAENPEEFRKQKIQE 468
M + DF+F WP A I +MG AA ++ R+ I E EE K+K +
Sbjct: 476 MCGRAYSPDFMFIWPNARIGIMGGAQAAGVLTQIERATKKRQGIKWTEEEEEAFKKKTVD 535
Query: 469 YREKFANPYVAASRGYIDDVIDPAETRAKIVMALEALENK 508
E+ ANPY + +R + D VIDP +TR + + L A N+
Sbjct: 536 AYEREANPYYSTARLWDDGVIDPCDTRKVLGLCLSAALNR 575
>gb|AAG17227.1|AF217984_1 (AF217984) unknown [Homo sapiens]
Length = 302
Score = 277 bits (701), Expect = 2e-73
Identities = 142/262 (54%), Positives = 183/262 (69%), Gaps = 6/262 (2%)
Query: 114 MELALEAGAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGA 173
M+ A+ GAPVIGLNDSGGARIQEGV+SL GY +IF N SGV+PQI+ IMGPCAGGA
Sbjct: 1 MDQAITVGAPVIGLNDSGGARIQEGVESLAGYADIFLRNVTASGVIPQISLIMGPCAGGA 60
Query: 174 VYSPAIGDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKS 233
VYSPA+ DF MV + S ++FITGP VVK+VT DVT +LGGA H SG AH ++
Sbjct: 61 VYSPALTDFTFMVKDTS-YLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFEN 119
Query: 234 DEEVIGLIKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAI 293
D + + ++ +YLP ++ + P + D R PEL IVP + KAY++ +I+++
Sbjct: 120 DVDALCNLRDFFNYLPLSSQDPAPVRECHDPSDRLVPELDTIVPLESTKAYNMVDIIHSV 179
Query: 294 VDRDENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFV 353
VD E F E+ P +A N ++GF R+NG+TVGIV N P +G LDI+SS K ARFV
Sbjct: 180 VDERE-----FFEIMPNYAKNIIVGFARMNGRTVGIVGNQPKVASGCLDINSSVKGARFV 234
Query: 354 RFCDAFNIPIVTFVDVPGYLPG 375
RFCDAFNIP++TFVDVPG+LPG
Sbjct: 235 RFCDAFNIPLITFVDVPGFLPG 256
>pir||F70550 probable accD1 protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2113935|emb|CAB08920.1| (Z95556) accD1
[Mycobacterium tuberculosis]
Length = 529
Score = 276 bits (699), Expect = 4e-73
Identities = 179/498 (35%), Positives = 268/498 (52%), Gaps = 33/498 (6%)
Query: 20 MGGEEAIKKQH-DKGKLTARERIELLLDPGS-FVEIGMFVKHRATEFGMDKRDLPADGVI 77
+GG E +K+H +GKL RER++ LLDPGS F+E+ GM + P G+I
Sbjct: 32 LGGNERARKRHVSRGKLLPRERVDRLLDPGSPFLELAPLAAG-----GMYGDESPGAGII 86
Query: 78 TGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGA---R 134
TG G ++GR + A D TV GG+ M K R E+AL+ P I L DSGGA R
Sbjct: 87 TGIGRVSGRQCVIVANDATVKGGTYYPMTVKKHLRAQEVALQNMLPCIYLVDSGGAFLPR 146
Query: 135 IQEGVDSLKGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSPAIGDFILMVDNPSTFM 193
E + +G IF +S +PQ+ A++G C G Y PA+ D ++V T +
Sbjct: 147 QDEVFPDREHFGRIFYNQATMSAKGIPQVAAVLGSCTAGGAYVPAMSDEAVIVREQGT-I 205
Query: 194 FITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLL-SYLPSNN 252
F+ GP +VKA TG V+ +LGG +H++ SG + DE+ + +++ + ++ P
Sbjct: 206 FLGGPPLVKAATGEIVSAEELGGGDLHSRTSGVTDHLADDDEDALRIVRAIADTFGPCEP 265
Query: 253 MEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYFA 312
+ V+ EP ELYD+VP DP YDV +V+ IVD E F E + +
Sbjct: 266 AQWD--VRRSVEPKYPQAELYDVVPPDPRVPYDVHEVVVRIVDGSE-----FSEFKAKYG 318
Query: 313 PNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGY 372
V F R++G VGIVANN GVL +S+ K A F+ CD IP++ ++ G+
Sbjct: 319 KTLVTAFARVHGHPVGIVANN-----GVLFSESALKGAHFIELCDKRKIPLLFLQNIAGF 373
Query: 373 LPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADFVFAWPT 432
+ G D E+ GI +HGAK++ A A A VP +TV++ +YG +M + F++ WP
Sbjct: 374 MVGRDYEAGGIAKHGAKMVTAVACARVPKLTVVIGGSYGAGNYSMCGRAYSPRFLWMWPN 433
Query: 433 AEIAVMGPEGAANIIFR---KEIAKAENP-----EEFRKQKIQEYREKFANPYVAASRGY 484
A I+VMG E AA+++ ++++ A P EE K I+ E NPY + +R +
Sbjct: 434 ARISVMGGEQAASVLATVRGEQLSAAGTPWSPDEEEAFKAPIRAQYEDQGNPYYSTARLW 493
Query: 485 IDDVIDPAETRAKIVMAL 502
D +IDPA+TR + +AL
Sbjct: 494 DDGIIDPADTRTVVGLAL 511
>gi|11545863 non-biotin containing subunit of 3-methylcrotonyl-CoA carboxylase
[Homo sapiens] >gi|10934059|dbj|BAB16880.1| (AB050049)
non-biotin containing subunit of 3-methylcrotonyl-CoA
carboxylase [Homo sapiens]
Length = 563
Score = 270 bits (682), Expect = 4e-71
Identities = 179/526 (34%), Positives = 275/526 (52%), Gaps = 37/526 (7%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRA 61
M V L++R + I GGE+A +GKL RERI+ L+DPGS F+E+ F ++
Sbjct: 49 MKALVNQLHERVEHIKLGGGEKARALHISRGKLLPRERIDNLIDPGSPFLELSQFAGYQL 108
Query: 62 TEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAG 121
D ++P G+ITG G ++G + A D TV GG+ + K R E+A++
Sbjct: 109 ----YDNEEVPGGGIITGIGRVSGVECMIIANDATVKGGAYYPVTVKKQLRAQEIAMQNR 164
Query: 122 APVIGLNDSGGARIQEGVDSLKG---YGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSP 177
P I L DSGGA + D +G F I+S + QI +MG C G Y P
Sbjct: 165 LPCIYLVDSGGAYLPRQADVFPDRDHFGRTFYNQAIMSSKNIAQIAVVMGSCTAGGAYVP 224
Query: 178 AIGDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEV 237
A+ D ++V T +F+ GP +VKA TG +V+ LGGA +H +KSG + D
Sbjct: 225 AMADENIIVRKQGT-IFLAGPPLVKAATGEEVSAEDLGGADLHCRKSGVSDHWALDDHHA 283
Query: 238 IGLIKRLLSYLPSNNMEKP--PRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVD 295
+ L ++++ L N +K ++P +EP ELY IV + +++DVR+VI IVD
Sbjct: 284 LHLTRKVVRNL---NYQKKLDVTIEPSEEPLFPADELYGIVGANLKRSFDVREVIARIVD 340
Query: 296 RDENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRF 355
F E + ++ V GF RI G VGIV NN GVL +S+ K FV+
Sbjct: 341 GSR-----FTEFKAFYGDTLVTGFARIFGYPVGIVGNN-----GVLFSESAKKGTHFVQL 390
Query: 356 CDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYL 415
C NIP++ ++ G++ G + E+ GI + GAK++ A A A VP +T+I+ +YG
Sbjct: 391 CCQRNIPLLFLQNITGFMVGREYEAEGIAKDGAKMVAAVACAQVPKITLIIGGSYGAGNY 450
Query: 416 AMGSKHLGADFVFAWPTAEIAVMGPEGAANIIFR----------KEIAKAENPEEFRKQK 465
M + F++ WP A I+VMG E AAN++ K+ + A+ E K+
Sbjct: 451 GMCGRAYSPRFLYIWPNARISVMGGEQAANVLATITKDQRAREGKQFSSAD--EAALKEP 508
Query: 466 IQEYREKFANPYVAASRGYIDDVIDPAETRAKIVMALEALENKRVK 511
I + E+ NPY +++R + D +IDPA+TR + ++ A N ++
Sbjct: 509 IIKKFEEEGNPYYSSARVWDDGIIDPADTRLVLGLSFSAALNAPIE 554
>gb|AAC38045.1| (U94697) propionyl-CoA carboxylase beta chain homolog [Caulobacter
crescentus] >gi|6502513|gb|AAF14341.1|U86303_2 (U86303)
propionyl-CoA carboxylase beta chain [Caulobacter
crescentus]
Length = 211
Score = 269 bits (681), Expect = 5e-71
Identities = 136/212 (64%), Positives = 164/212 (77%), Gaps = 4/212 (1%)
Query: 311 FAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVP 370
+A N + GF R++G+TVGIVAN P LAGVLDIDSS K ARFVRFCDAFNIPIVTFVDVP
Sbjct: 4 WAKNIICGFARMDGETVGIVANQPQVLAGVLDIDSSRKAARFVRFCDAFNIPIVTFVDVP 63
Query: 371 GYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADFVFAW 430
G++PG QE G+I+HGAK+L+AY EATVP +TVI RKAYGGAY M SKHL D +AW
Sbjct: 64 GFMPGTKQEYGGLIKHGAKLLFAYTEATVPKITVITRKAYGGAYDVMSSKHLRGDLNYAW 123
Query: 431 PTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYIDDVID 490
PTAEIAVMG +GA IIFR+E A++PE ++ EY+++FANP+VAA RGYIDDVI
Sbjct: 124 PTAEIAVMGAKGAVEIIFRQE---AKDPEALAARE-AEYKDRFANPFVAAQRGYIDDVIM 179
Query: 491 PAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
P TR +IV L++L+ K + P KKH NIPL
Sbjct: 180 PHGTRRRIVRGLKSLKGKELSNPWKKHDNIPL 211
>gb|AAF57388.1| (AE003789) CG3267 gene product [Drosophila melanogaster]
Length = 578
Score = 266 bits (674), Expect = 3e-70
Identities = 185/533 (34%), Positives = 268/533 (49%), Gaps = 43/533 (8%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRA 61
M V DL ++L+ GG++AI++ +GKL ARERI LLLD GS F+E+ H
Sbjct: 48 MASLVGDLRNFTSQVLKGGGQKAIERHTSRGKLLARERINLLLDKGSPFLELSALAGHEL 107
Query: 62 TEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAG 121
+ + + G++TG G + G V A D TV GGS + K R E+A E
Sbjct: 108 ----YGEEVVNSGGIVTGVGRVCGTECLVVANDATVKGGSYYPITVKKHLRAQEIAQENR 163
Query: 122 APVIGLNDSGGARIQEGVDSLKG---YGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSP 177
P I L DSGGA + D +G IF +S +PQI +MG C G Y P
Sbjct: 164 LPCIYLVDSGGANLPRQADVFPDKLHFGRIFYNQANMSAQGIPQIAVVMGSCTAGGAYVP 223
Query: 178 AIGDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEV 237
A+ D ++V T +F+ GP +VKA TG +V+ LGGA +H + SG DE
Sbjct: 224 AMADESIIVKKQGT-IFLAGPPLVKAATGEEVSAEDLGGADLHCKTSGVTDHYALDDEHA 282
Query: 238 IGLIKRLLSYLPSN---------------NMEKPPRVKPKDEPFRRTPELYDIVPDDPNK 282
+ L ++++S L + N + +EP ELY IV + K
Sbjct: 283 LYLARQIVSNLNLSATNSYNDQLMHSSQVNFQTATPPSAVEEPRYDAEELYGIVGPNLTK 342
Query: 283 AYDVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLD 342
++DVR+VI IVD F E + + V GF ++ G TVGIV NN GVL
Sbjct: 343 SFDVREVIARIVDGSR-----FTEFKKLYGETLVCGFAKLYGHTVGIVGNN-----GVLF 392
Query: 343 IDSSDKIARFVRFCDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMV 402
+S+ K A F++ C IP+V ++ G++ G D E+ GI ++GAK++ A A A VP
Sbjct: 393 SESALKGAHFIQLCAQRKIPLVFLQNITGFMVGRDAEANGIAKNGAKMVTAVACANVPKF 452
Query: 403 TVILRKAYGGAYLAMGSKHLGADFVFAWPTAEIAVMGPEGAANIIF------RKEIAKAE 456
TVI+ +YG M + F++ WP + I+VMG AAN++ RK K
Sbjct: 453 TVIIGGSYGAGNYGMCGRAYSPRFLYMWPNSRISVMGGTQAANVMAQITEDQRKRAGKEF 512
Query: 457 NPEEFRKQK--IQEYREKFANPYVAASRGYIDDVIDPAETRAKIVMALEALEN 507
+ EE +K K I E E +PY + +R + D +IDPA TR + ++L+A N
Sbjct: 513 SEEEAQKLKAPIVEMFEAEGSPYYSTARLWDDGIIDPANTRQILGLSLKAALN 565
>pir||F75382 probable propionyl-CoA carboxylase, beta subunit - Deinococcus
radiodurans (strain R1)
>gi|6459304|gb|AAF11105.1|AE001998_2 (AE001998)
propionyl-CoA carboxylase, beta subunit, putative
[Deinococcus radiodurans]
Length = 558
Score = 264 bits (667), Expect = 2e-69
Identities = 177/517 (34%), Positives = 261/517 (50%), Gaps = 46/517 (8%)
Query: 21 GGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRATEFGMDKRDLPADGVITG 79
GG +A ++QHDKG+LTARER+ L+DPG+ F E+ F + E D P+ G +TG
Sbjct: 38 GGAKAQQRQHDKGRLTARERVSKLIDPGTPFDELMTFAGYGMYE---DVGGCPSGGTVTG 94
Query: 80 YGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARI---Q 136
G I GR + A D TV G+ + A K+ R +ALE P L DS G +
Sbjct: 95 IGQIGGRPWMIIANDATVKAGAFFPITAKKVIRAQTIALENHLPTAYLVDSAGVYLPMQD 154
Query: 137 EGVDSLKGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSPAIGDFILMVDNPSTFMFI 195
E +G +F +N +S +PQI AIMG C G Y P + D ++M + +++
Sbjct: 155 EIFPDQDDFGRVFYLNARMSAAGIPQIAAIMGNCVAGGAYLPVMCDTLIMTEGSG--LYL 212
Query: 196 TGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLS-YLPSNNME 254
GP +VKA G V LGGA +H+ +G K D+ I ++ L Y P+
Sbjct: 213 AGPALVKAAIGQVVDSEDLGGASMHSAIAGTVDYKEKDDDAAINRLRALAELYAPAEPAP 272
Query: 255 KPPRVKP-KDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYFAP 313
R K +D P R +L ++V D K YDVR +I ++ D E F E +P +
Sbjct: 273 FAKRRKETQDAPAR---DLTELVGFDSAKTYDVRDLIKSLADGGE-----FHEFKPEYGE 324
Query: 314 NAVIGFGRINGQTVGIVANNP------------------IHLAGVLDIDSSDKIARFVRF 355
V GF R G V VAN I + GV+ DS+DK ARF+
Sbjct: 325 TIVCGFARAGGYPVAFVANQRTVIKKKLKSGGEPGLRTRIEVGGVIYGDSADKAARFILD 384
Query: 356 CDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYL 415
+ +P+V DV G++ G D E GIIR GAK++ A + + VP +T+I ++G
Sbjct: 385 ANQAGVPLVFLSDVTGFMVGRDSEQEGIIRRGAKLVNAVSNSVVPKITIITGGSFGAGNY 444
Query: 416 AMGSKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKA-----ENPEEFRKQKIQEYR 470
AM K G F+FAWP+A+ AVM AA + ++A E +E + E +
Sbjct: 445 AMNGKAYGPRFIFAWPSAKYAVMSGNAAAKTLLDIQLAALKRSGHEPDDEELTRLYDEVK 504
Query: 471 EKF---ANPYVAASRGYIDDVIDPAETRAKIVMALEA 504
K+ +P AA+R ++D++I+P +TRA+++ ALEA
Sbjct: 505 SKYDTELDPRYAAARLWVDEIIEPNDTRARLIRALEA 541
>emb|CAA68941.1| (Y07660) B subunit of propionyl-CoA carboxylase [Mycobacterium
tuberculosis]
Length = 522
Score = 259 bits (656), Expect = 4e-68
Identities = 173/492 (35%), Positives = 258/492 (52%), Gaps = 43/492 (8%)
Query: 21 GGEEAIKKQH-DKGKLTARERIELLLDPGS-FVEIGMFVKHRATEFGMDKRDLPADGVIT 78
G E A K +H +GKL RER++ LLDPGS F+E+ + R +R+ P G+IT
Sbjct: 15 GNERARKXRHVSRGKLLPRERVDRLLDPGSPFLELAPLGRWRHVR----RRNSPGAGIIT 70
Query: 79 GYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGA----R 134
G G ++GR + A D TV GG+ M K R E+AL+ P I L DSGGA R
Sbjct: 71 GIGRVSGRQCVIVANDATVKGGTYYPMTVKKHLRAQEVALQNMLPCIYLVDSGGAXPDPR 130
Query: 135 IQEGVDSLKGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSPAIGDFILMVDNPSTFM 193
E + +G IF +S +PQ+ A++G C G Y PA+ D ++V T +
Sbjct: 131 QDEVFPDREHFGRIFYNQATMSAKGIPQVAAVLGSCTAGGAYVPAMSDEAVIVREQGT-I 189
Query: 194 FITGPQVVKAVTGVDVTPVQ-LGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSNN 252
F+ GP +VKA ++ + LGG +H++ SG + DE+ + +++ +
Sbjct: 190 FLGGPPLVKAPARXEIVSAEELGGGDLHSRTSGVTDHLADDDEDALRIVRAIADTF---- 245
Query: 253 MEKPPRVKPKD-EPFRRTP-----ELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLE 306
+P R +P PF R P ELYD+VP DP YDV +V+ IVD E F E
Sbjct: 246 --RPVRTRPMGCAPFGRWPKYPQAELYDVVPPDPRVPYDVHEVVVRIVDGSE-----FSE 298
Query: 307 LQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTF 366
+ + V F R++G VGIVANN GVL +S+ K A F+ CD IP++
Sbjct: 299 FKAKYGKTLVTAFARVHGHPVGIVANN-----GVLFSESALKGAHFIELCDKRKIPLLFL 353
Query: 367 VDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADF 426
++ G++ G D E+ GI +HGAK++ A A A VP +TV++ +YG +M + F
Sbjct: 354 QNIAGFMVGRDYEAGGIAKHGAKMVTAVACARVPKLTVVIGGSYGAGNYSMCGRAYSPRF 413
Query: 427 VFAWPTAEIAVMGPEGAANIIFR---KEIAKAENP-----EEFRKQKIQEYREKFANPYV 478
++ WP A I+VMG E AA+++ ++++ A P EE K I+ E NPY
Sbjct: 414 LWMWPNARISVMGGEQAASVLATVRGEQLSAAGTPWSPDEEEAFKAPIRAQYEDQGNPYY 473
Query: 479 AASRGYIDDVID 490
+ +R + D +ID
Sbjct: 474 STARLWDDGIID 485
>pir||C83395 probable acyl-CoA carboxyltransferase beta chain PA2014 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948017|gb|AAG05402.1|AE004627_10 (AE004627)
probable acyl-CoA carboxyltransferase beta chain
[Pseudomonas aeruginosa]
Length = 535
Score = 255 bits (645), Expect = 8e-67
Identities = 174/522 (33%), Positives = 264/522 (50%), Gaps = 30/522 (5%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRA 61
M+E+V L +I + GG A + +GKL RERI LLDPGS F+E+ H
Sbjct: 22 MLEQVNALRTLLGRIHEGGGSAAQARHSARGKLLVRERINRLLDPGSPFLELSALAAHEV 81
Query: 62 TEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAG 121
+G ++ A G++ G G + G + D TV GG+ + K R +ALE
Sbjct: 82 --YG---EEVAAAGIVAGIGRVEGVECMIVGNDATVKGGTYYPLTVKKHLRAQAIALENR 136
Query: 122 APVIGLNDSGGARI---QEGVDSLKGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSP 177
P I L DSGGA + E + +G IF +S +PQI +MG C G Y P
Sbjct: 137 LPCIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSARGIPQIAVVMGSCTAGGAYVP 196
Query: 178 AIGDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEV 237
A+ D +MV +T +F+ GP +VKA TG V+ +LGGA VH + SG A + D+
Sbjct: 197 AMSDETVMVREQAT-IFLAGPPLVKAATGEVVSAEELGGADVHCKVSGVADHYAEDDDHA 255
Query: 238 IGLIKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRD 297
+ + +R ++ L + P+ P ELY ++P D + YDVR+VI +VD
Sbjct: 256 LAIARRCVANLNWRKQGQLQCRAPR-APLYPAEELYGVIPADSKQPYDVREVIARLVDGS 314
Query: 298 ENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCD 357
E F E + F V GF ++G + I+ANN G+L +++ K A F+
Sbjct: 315 E-----FDEFKALFGTTLVCGFAHLHGYPIAILANN-----GILFAEAAQKGAHFIELAC 364
Query: 358 AFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAM 417
IP++ ++ G++ G E+ GI +HGAK++ A A A VP TV++ ++G M
Sbjct: 365 QRGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYGM 424
Query: 418 GSKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAEN-------PEEFR-KQKIQEY 469
+ F++ WP A I VMG E AA ++ + + +AE EE + K I E
Sbjct: 425 CGRAYDPRFLWMWPNARIGVMGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQ 484
Query: 470 REKFANPYVAASRGYIDDVIDPAETRAKIVMALEALENKRVK 511
E +PY +++R + D VIDPA+TR + +AL A N ++
Sbjct: 485 YEHQGHPYYSSARLWDDGVIDPAQTREVLALALSAALNAPIE 526
>pir||T05433 hypothetical protein F28A23.210 - Arabidopsis thaliana
>gi|2911059|emb|CAA17569.1| (AL021961) putative protein
[Arabidopsis thaliana] >gi|7270352|emb|CAB80120.1|
(AL161584) putative protein [Arabidopsis thaliana]
Length = 630
Score = 253 bits (640), Expect = 3e-66
Identities = 182/563 (32%), Positives = 265/563 (46%), Gaps = 77/563 (13%)
Query: 7 VEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRATEFG 65
+ +L KK+L GGEEA+K+ + KL RERI+ LLDPGS F+E+ H E
Sbjct: 72 LSELRSHIKKVLAGGGEEAVKRNRSRNKLLPRERIDRLLDPGSSFLELSQLAGHELYE-- 129
Query: 66 MDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
LP+ G+ITG G I+GR+ A D TV GG+ + K R E+A P I
Sbjct: 130 ---EPLPSGGIITGIGPIHGRICMFMANDPTVKGGTYYPITIKKHLRAQEIAARCRLPCI 186
Query: 126 GLNDSGGARIQEGVDSL---KGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSPAIGD 181
L DSGGA + + + + +G +F +++S +PQI ++G C G Y PA+ D
Sbjct: 187 YLVDSGGAYLPKQAEVFPDKENFGRVFYNESVMSSDGIPQIAIVLGSCTAGGAYIPAMAD 246
Query: 182 FILMVDNPSTFMFITGPQVVK--------------AVTGVDVTPVQLGGALVHAQKSGQA 227
+MV T +F+ GP +VK A TG +V+ LGGA VH SG +
Sbjct: 247 ESVMVKGNGT-IFLAGPPLVKFLENLTLNEKAFEQAATGEEVSAEDLGGATVHCTVSGVS 305
Query: 228 HLIGKSDEEVIGLIKRLLSYL---PSNNMEKPPRVKPK--DEPFRRTPELYDIVPDDPNK 282
+ + + + + ++ L ME K EP EL I P D +
Sbjct: 306 DYFAQDELHGLAIGRNIVKNLHMAAKQGMEGTFGSKNLVYKEPLYDINELRSIAPVDHKQ 365
Query: 283 AYDVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLD 342
+DVR +I IVD E F E + + V GF RI GQTVGI+ NN G+L
Sbjct: 366 QFDVRSIIARIVDGSE-----FDEFKKQYGTTLVTGFARIYGQTVGIIGNN-----GILF 415
Query: 343 IDSSDKIARFVRFCDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMV 402
+S+ K A F+ C IP+V ++ G++ G E+ GI + GAK++ A + A VP +
Sbjct: 416 NESALKGAHFIELCSQRKIPLVFLQNITGFMVGSRAEANGIAKAGAKMVMAVSCAKVPKI 475
Query: 403 TVILRKAYGGAYLAMGSKHLGADFVFAWPTAEIAVMG----------------------- 439
T+I ++G AM + DF+F WP A I +MG
Sbjct: 476 TIITGASFGAGNYAMCGRAYSPDFMFIWPNARIGIMGGAQVNQNAPKCLNRNQTESKCVY 535
Query: 440 ------PEGAANIIF--------RKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYI 485
AA ++ R+ I E EE K+K + E+ ANPY + +R +
Sbjct: 536 NLSVAEQNSAAGVLTQIERATKKRQGIKWTEEEEEAFKKKTVDAYEREANPYYSTARLWD 595
Query: 486 DDVIDPAETRAKIVMALEALENK 508
D VIDP +TR + + L A N+
Sbjct: 596 DGVIDPCDTRKVLGLCLSAALNR 618
>pir||D70719 probable propionyl-CoA carboxylase - Mycobacterium tuberculosis
(strain H37RV) >gi|3261632|emb|CAB02011.1| (Z79700)
accD2 [Mycobacterium tuberculosis]
Length = 529
Score = 238 bits (602), Expect = 9e-62
Identities = 163/520 (31%), Positives = 264/520 (50%), Gaps = 31/520 (5%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRA 61
M K++++ K L GG + + + H +G LT RERIELL+DP S F+E+ + +
Sbjct: 20 MSGKLDEINAELAKALAGGGPKYVDRHHARGNLTPRERIELLVDPDSPFLELSPLAAYGS 79
Query: 62 T-EFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEA 120
+ G ++TG G + G + A D TV GG+ KI R ++A E
Sbjct: 80 NFQIGAS--------LVTGIGAVCGVECMIVANDPTVKGGTSNPWTLRKILRANQIAFEN 131
Query: 121 GAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSPAI 179
PVI L +SGGA + + G++F+ T LS +P I + G G Y P +
Sbjct: 132 RLPVISLVESGGADLPTQKEIFIPGGQMFRDLTRLSAAGIPTIALVFGNSTAGGAYVPGM 191
Query: 180 GDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIG 239
D ++M+ S +F+ GP +VK TG + LGGA +HA+ SG A + + I
Sbjct: 192 SDHVVMIKERSK-VFLAGPPLVKMATGEESDDESLGGAEMHARISGLADYFALDELDAIR 250
Query: 240 LIKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDEN 299
+ +R+++ L N +++ P P EP EL IVP D +D R+VI IVD E
Sbjct: 251 IGRRIVARL--NWIKQGPAPAPVTEPLFDAEELIGIVPPDLRIPFDPREVIARIVDGSE- 307
Query: 300 GNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAF 359
F E +P + + V G+ R++G +GI+AN GVL + S K +F++ +
Sbjct: 308 ----FDEFKPLYGSSLVTGWARLHGYPLGILAN----ARGVLFSEESQKATQFIQLANRA 359
Query: 360 NIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGS 419
+ P++ + GY+ G D E G+I+HG+ ++ A + +TVP +++++ +YG + M
Sbjct: 360 DTPLLFLHNTTGYMVGKDYEEGGMIKHGSMMINAVSNSTVPHISLLIGASYGAGHYGMCG 419
Query: 420 KHLGADFVFAWPTAEIAVMGP---EGAANIIFRKEI-AKAENPEE----FRKQKIQEYRE 471
+ F+FAWP+A+ AVMG G +I+ R A+ + +E + ++ E
Sbjct: 420 RAYDPRFLFAWPSAKSAVMGGAQLSGVLSIVARAAAEARGQQVDEAADAAMRAAVEGQIE 479
Query: 472 KFANPYVAASRGYIDDVIDPAETRAKIVMALEALENKRVK 511
+ P V + Y D VIDP +TR + M L A+ N +K
Sbjct: 480 AESLPLVLSGMLYDDGVIDPRDTRTVLGMCLSAIANGPIK 519
>emb|CAB95891.1| (AL359988) putative acetyl/propionyl CoA carboxylase, beta subunit
[Streptomyces coelicolor A3(2)]
Length = 532
Score = 238 bits (600), Expect = 2e-61
Identities = 163/513 (31%), Positives = 254/513 (48%), Gaps = 29/513 (5%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRA 61
M+ K+ DL K L GGE+ + + +GKL ARERIELLLDP + F+E+
Sbjct: 22 MLAKLADLDAEHAKALAGGGEKYVARHRKRGKLLARERIELLLDPDTPFLELSPLAAW-G 80
Query: 62 TEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAG 121
+E+ + ++TG G + G + A D TV GG+ K R ++AL
Sbjct: 81 SEYTVGA------SLVTGIGVVEGVECLITANDPTVRGGASNPWSLKKALRANDIALANR 134
Query: 122 APVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSPAIG 180
P I L +SGGA + + G IF+ T LS +P I + G G Y P +
Sbjct: 135 LPCISLVESGGADLPSQKEIFIPGGAIFRDLTRLSAAGIPTIAVVFGNSTAGGAYIPGMS 194
Query: 181 DFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL 240
D +MV + +F+ GP +VK TG + LGGA +HA+ SG A + + +
Sbjct: 195 DHTIMVKERAK-VFLGGPPLVKMATGEESDDESLGGAEMHARTSGLADHFAVDEPDALRQ 253
Query: 241 IKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENG 300
+R+++ L P P + P EL IVP D +D R+VI IVD
Sbjct: 254 ARRVVARLNHRKAYADP--PPAEPPMYDPEELLGIVPGDLRTPFDPREVIARIVDAS--- 308
Query: 301 NPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFN 360
DF E +P + + G+ ++G VGI+AN GVL + S K A+F++ + +
Sbjct: 309 --DFDEFKPLYGTSLTTGWAALHGYPVGILAN----ARGVLFSEESQKAAQFIQLANQRD 362
Query: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSK 420
IP++ + GY+ G + E GII+HGA ++ A + + VP ++V+L +YG + M +
Sbjct: 363 IPLLFLHNTTGYMVGREYEQGGIIKHGAMMINAVSNSRVPHLSVLLGASYGAGHYGMCGR 422
Query: 421 HLGADFVFAWPTAEIAVMGPE---GAANIIFRKEIAKAENP-----EEFRKQKIQEYREK 472
F+FAWP+A+ AVMGP+ G +I+ R+ A P + + +++ E
Sbjct: 423 AYDPRFLFAWPSAKSAVMGPQQLAGVLSIVARQSAAAKGQPYDDEGDAALRAMVEQQIES 482
Query: 473 FANPYVAASRGYIDDVIDPAETRAKIVMALEAL 505
+ P + R Y D VIDP +TR + + L A+
Sbjct: 483 ESLPMFLSGRLYDDGVIDPRDTRTVLGLCLSAV 515
>dbj|BAB16296.1| (AB039884) acetyl-CoA carboxylase carboxyltransferase [Myxococcus
xanthus]
Length = 538
Score = 238 bits (600), Expect = 2e-61
Identities = 167/528 (31%), Positives = 262/528 (48%), Gaps = 27/528 (5%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRA 61
M+ +V +L K+ + A +K H +G+L RER+ LLLD GS F+E+ +
Sbjct: 22 MLARVSELRAIEAKVRNTENQ-AKEKFHKRGQLLPRERLMLLLDRGSPFLELSTLCGYGY 80
Query: 62 TEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAG 121
+ L I G G ++G V+ + + GG+ K R LALE
Sbjct: 81 HDDS--DGSLAGGNSIIGIGYVSGVRCIVFVNNSAIKGGTASPWGVQKALRAQALALENK 138
Query: 122 APVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSPAIG 180
P++ L +SGGA + + GE F LS +PQ+T + G G Y P +
Sbjct: 139 LPMVSLVESGGANLMYQQEIFIPGGETFYNQARLSAAGIPQVTVVHGSSTAGGAYLPGLS 198
Query: 181 DFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL 240
D+++MV + +F+ GP ++KA TG T +LGGA +HA +G A + + D + I +
Sbjct: 199 DYVVMVKKKAK-VFLAGPPLLKAATGEVATDEELGGAQMHATVAGTADYLAEDDADAIRM 257
Query: 241 IKRLLSYLPSNNMEKPPRVKPK-DEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDEN 299
+ +++ L N + PP +P EP EL VP D K YD R+VI IVD E
Sbjct: 258 AREIVAKL-GWNAQLPPTERPAYAEPVYSPDELCGAVPVDYRKPYDCREVIARIVDGSE- 315
Query: 300 GNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAF 359
F + + + V G+ + G +GI+ NN G + + K A+F++ C
Sbjct: 316 ----FTGFKDEYDAHTVCGWANLYGHPLGIIGNN-----GPISPQGATKAAQFIQLCCQK 366
Query: 360 NIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGS 419
+ PI+ + GYL G E GI++HGAK++ A A ATVP +TV++ A+G M
Sbjct: 367 DTPILYLQNTTGYLVGTQPEQGGIVKHGAKMIQAVANATVPQLTVLIGGAFGAGNYGMCG 426
Query: 420 KHLGADFVFAWPTAEIAVMGPEGAA---NIIFRKEIAKAEN--PEEFRK---QKIQEYRE 471
+ F+F WP + AVMG E AA +I+F +++A+ EE K Q I + +
Sbjct: 427 RPFHPRFIFGWPNSRTAVMGGEQAAKVMSIVFGEKLARQGQVVDEEQLKAFCQPIIDQFD 486
Query: 472 KFANPYVAASRGYIDDVIDPAETRAKIVMALEAL-ENKRVKLPPKKHG 518
K ++P+ ++R + D +IDP +TR + AL E KR ++ P G
Sbjct: 487 KESHPFNCSARMFDDGLIDPRDTRRVLGFALSVCREAKRRQVHPNTFG 534
>pir||C83284 probable biotin-dependent carboxylase PA2888 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948979|gb|AAG06276.1|AE004715_2 (AE004715) probable
biotin-dependent carboxylase [Pseudomonas aeruginosa]
Length = 538
Score = 235 bits (592), Expect = 1e-60
Identities = 140/448 (31%), Positives = 229/448 (50%), Gaps = 18/448 (4%)
Query: 3 MMEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRA 61
M+ V + +K+L E A K +G+L RER+ LLLDPG+ F+E+ ++
Sbjct: 22 MLAAVAGFRELEQKVLDKAAE-ARPKFEKRGQLLPRERLALLLDPGAPFLELSSLAGYKL 80
Query: 62 TEFGMDKRDLPADG-VITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEA 120
+ DK A G +I G G I G V A + + GG++ K R+ ++A+E
Sbjct: 81 HD---DKDGTQAGGGIIAGIGYIAGVRCLVSASNSAIKGGTISPTGLKKTLRLQQIAMEN 137
Query: 121 GAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVYSPAI 179
PV+ L +SGGA + + F +S + +PQ+T + G G Y P +
Sbjct: 138 KLPVVTLTESGGANLNYAAEIFVEGARGFANQARISAMGIPQVTVVHGSSTAGGAYQPGL 197
Query: 180 GDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIG 239
D++++V + MF+ GP ++KA TG + +LGGA +HAQ +G A + ++D + +
Sbjct: 198 SDYVVVVRGKAK-MFLAGPPLLKAATGEIASDEELGGAELHAQVAGTAEYLAENDADGVR 256
Query: 240 LIKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDEN 299
L + ++ LP N + EP EL +VP DP K YDVR+++ I D E
Sbjct: 257 LAREIVGMLPWNAQLPARPARSWREPLYPVEELLGVVPADPKKPYDVREIVARIADGSE- 315
Query: 300 GNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAF 359
FL+ + F V G RI G G++ NN G + + K A+F++ C+
Sbjct: 316 ----FLDFKNEFDGQTVCGHLRIEGHACGLIGNN-----GPITPQGAAKAAQFIQLCEQS 366
Query: 360 NIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGS 419
N P++ + G++ G + E +G+I+HG+K++ A A A VP +T+++ +YG AM
Sbjct: 367 NTPLLFLHNTTGFMVGTESERQGVIKHGSKMIQAVANARVPKLTLVVGGSYGAGNYAMCG 426
Query: 420 KHLGADFVFAWPTAEIAVMGPEGAANII 447
+ L F+FAWP + AVMG A ++
Sbjct: 427 RGLDPRFIFAWPNSRTAVMGGAQAGKVL 454
>pir||B83471 probable pyruvate carboxylase PA1400 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947346|gb|AAG04789.1|AE004569_7 (AE004569) probable
pyruvate carboxylase [Pseudomonas aeruginosa]
Length = 1095
Score = 224 bits (565), Expect = 2e-57
Identities = 172/524 (32%), Positives = 254/524 (47%), Gaps = 59/524 (11%)
Query: 9 DLYQRRKKILQMGGE---EAIKKQHDKGKLTARERIELLLDPGSFVEIGMFV-----KHR 60
DL + ++ +G E +A+ ++ G+ TARE + LLD GSF E G F + R
Sbjct: 581 DLAEVLERQAALGDERRPQALARRRKTGQRTARENVLDLLDEGSFSEYGGFALAAQRRRR 640
Query: 61 ATEFGMDKRDLPADGVITGYGTINGRLV-------FVYAQDFTVMGGSLGEMHAMKIKRI 113
+ E ++ PADG++ G GT+ V A D+TV G+ G M+ K R+
Sbjct: 641 SAEELLELS--PADGLVAGTGTVGAASFGVQAARCLVLAYDYTVFAGTQGVMNHKKTDRL 698
Query: 114 MELALEAGAPVIGLNDSGGARIQE----GVDSLKGYGEIFKMNTILSGVVPQITAIMGPC 169
+ LA + P++ + GG R + GV L + F LSG+VP + + G C
Sbjct: 699 LGLAEQWRLPLVLFAEGGGGRPGDTDFVGVAGLDCH--TFVGMARLSGLVPLVGVVSGRC 756
Query: 170 AGGAVYSPAIGDFILMVDNPSTFMFITGPQVVKA-----VTGVDVTPVQLGGALVHAQKS 224
G D I+ + + M GP +++ +V P + G +
Sbjct: 757 FAGNAALLGCCDVIIATRDATIGM--AGPAMIEGGGLGRFAAEEVGPTGVQGP------N 808
Query: 225 GQAHLIGKSDEEVIGLIKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAY 284
G ++ + + E + + +R L Y D EL +VP++ +AY
Sbjct: 809 GVIDVLVEDEAEAVAVARRYLGYFQG---------PLPDWSCADQRELRHLVPENRLRAY 859
Query: 285 DVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVANNPIHLAGVLDID 344
D+RQ I + DR LEL+ FAP V RI G+ G++ANNP HL G +D
Sbjct: 860 DIRQAIEVLADRGS-----VLELRRQFAPGLVTALLRIEGRAFGLIANNPGHLGGAIDAA 914
Query: 345 SSDKIARFVRFCDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTV 404
+ DK ARF++ CDAF+IPIV+ D PG++ G + E + +RH +++ + A TVP TV
Sbjct: 915 AGDKAARFMQLCDAFDIPIVSLCDTPGFMVGPEAEKQATVRHVSRMFVSAASLTVPFFTV 974
Query: 405 ILRKAYG-GAY-LAMGSKHLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEE-- 460
+LRK YG GA +A GS H F AWP+ E MG EGA + F KE+A E+P+
Sbjct: 975 VLRKGYGLGAQAMAAGSFH-SPLFTVAWPSGEFGAMGLEGAVRLGFAKELAAEEDPQRRE 1033
Query: 461 --FRKQKIQEYREKFANPYVAASRGYIDDVIDPAETRAKIVMAL 502
FR + YR AS ID VIDPAETRA ++ L
Sbjct: 1034 ALFRGMVDKAYRN--GKALNMASYLEIDAVIDPAETRAWLLRGL 1075
>pir||C75585 carboxylase - Deinococcus radiodurans (strain R1)
>gi|6460763|gb|AAF12468.1|AE001863_93 (AE001863)
carboxylase [Deinococcus radiodurans]
Length = 1091
Score = 215 bits (542), Expect = 1e-54
Identities = 161/497 (32%), Positives = 245/497 (48%), Gaps = 41/497 (8%)
Query: 25 AIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGMDKRD-----LPADGVITG 79
A++K+H GKLTARE + LLD GSF E G A + G + PADG+ITG
Sbjct: 599 AVEKRHAAGKLTARENVAALLDAGSFNEHGALAL--AAQRGRRSEEELLALSPADGLITG 656
Query: 80 YGTING------RLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGA 133
GT+N V A D+TV+ G+ G + K+ R++ LA + P++ + GG
Sbjct: 657 VGTVNAGQFPDTAACAVAAYDYTVLAGTQGYFNHHKLDRLIALAGQWKWPLVLFAEGGGG 716
Query: 134 RIQEGVDSLKG--YGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILMVDNPST 191
R + + F LSG VP + G C G D ++ + S
Sbjct: 717 RPGDTDMPVAAALVTPTFLNFAALSGQVPLVGVAAGACFAGNAALLGCCDVVIATRDSS- 775
Query: 192 FMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSN 251
+ + GP +++ V +G A V AQK G L+ ++D E L +R L+Y +
Sbjct: 776 -IGLGGPAMIEGGGLGVVAAGDIGPAEVLAQK-GVVDLLAENDAEANELARRYLTYFQGD 833
Query: 252 NMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYF 311
V + +R EL ++P +AYDVR +++ + D LEL+ F
Sbjct: 834 -------VTGWEAADQR--ELRWVIPQVRKRAYDVRALLHLLADTGS-----VLELRRAF 879
Query: 312 APNAVIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPG 371
AP + RI G+ G++AN+P L G +D +DK ARF+ CD +P+++ VD PG
Sbjct: 880 APGLLTALVRIGGKAFGVIANDPAVLGGAIDAAGADKAARFLNLCDTHRLPVLSLVDTPG 939
Query: 372 YLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYG-GAY-LAMGSKHLGADFVFA 429
++ G E+ G +RH +++ A+ TVP V+ R+AYG GA +A GS H A +
Sbjct: 940 FMVGPASEAEGAVRHVSRLFVRAAKLTVPFFAVVTRRAYGLGAQAMAAGSLHAPA-LTVS 998
Query: 430 WPTAEIAVMGPEGAANIIFRKEIAKAENPEE----FRKQKIQEYREKFANPYVAASRGYI 485
WP E MG EGA + +R+E+A +P+E ++K Q Y + A+ +
Sbjct: 999 WPGGEFGPMGLEGAVRLGYRRELAAVSDPQEREALYQKLVAQAYAQ--GEAVNVAAHLEV 1056
Query: 486 DDVIDPAETRAKIVMAL 502
D VIDPAETR ++ AL
Sbjct: 1057 DAVIDPAETRNWLLRAL 1073
>pir||T45098 probable propionyl-coA carboxylase beta chain [imported] -
Mycobacterium smegmatis (fragment)
>gi|2073536|gb|AAC45278.1| (U46844) putative
propionyl-coA carboxylase beta chain [Mycobacterium
smegmatis]
Length = 210
Score = 197 bits (495), Expect = 3e-49
Identities = 99/209 (47%), Positives = 135/209 (64%), Gaps = 2/209 (0%)
Query: 316 VIGFGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGYLPG 375
+ F R++G VG++AN P+ L+G +D ++SDK A F+RFCD++N+P+V VD PG +PG
Sbjct: 2 ITAFARVDGHPVGVIANQPMVLSGAIDNEASDKAASFIRFCDSYNLPLVFVVDTPGAMPG 61
Query: 376 VDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADFVFAWPTAEI 435
V +E GII+ G + A EA VP VTVI+RKAYGG Y MGSK L AD FAWPTA I
Sbjct: 62 VAEEKGGIIKRGGRFFNAIVEADVPKVTVIIRKAYGGGYAVMGSKQLSADLNFAWPTARI 121
Query: 436 AVMGPEGAANIIFRK-EIAKAENPEEFRKQKIQEYREKFANPYVAASRGYIDDVIDPAET 494
AV+G EGAA ++ ++ A ++ R I+ Y A P++AA RGYID VI P ET
Sbjct: 122 AVIGAEGAAQLLVKRFPDPNAPEVQKIRDDFIEGYNLNMATPWIAAERGYIDAVIQPHET 181
Query: 495 RAKIVMALEALENKR-VKLPPKKHGNIPL 522
R + +L L +K+ +KHG +PL
Sbjct: 182 RLLLRKSLRLLRDKQNGPKVQRKHGLLPL 210
>gb|AAC69174.1| (AF030576) methylmalonyl-CoA decarboxylase alpha subunit
[Acidaminococcus fermentans]
Length = 154
Score = 194 bits (489), Expect = 2e-48
Identities = 98/162 (60%), Positives = 119/162 (72%), Gaps = 8/162 (4%)
Query: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSK 420
IP++ VDVPG+LPG DQE GIIRHGAK+LYAY EATVP +T++ RKAYGGAYLAM ++
Sbjct: 1 IPLINIVDVPGFLPGTDQEYGGIIRHGAKMLYAYCEATVPKITLVTRKAYGGAYLAMCAQ 60
Query: 421 HLGADFVFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAA 480
LGAD V AWPTAEIAVMGP+GAA IIFRK+ P+ +QK QEY FA PY AA
Sbjct: 61 DLGADHVIAWPTAEIAVMGPQGAAKIIFRKD------PDV--EQKTQEYITNFATPYYAA 112
Query: 481 SRGYIDDVIDPAETRAKIVMALEALENKRVKLPPKKHGNIPL 522
G ++ VI+P TR ++ AL L++K+ P KKHGNIPL
Sbjct: 113 KHGMVEMVIEPKTTRPILIKALRMLKSKQEDRPTKKHGNIPL 154
>gb|AAA60036.1| (M13573) propionyl-CoA carboxylase beta chain (EC 6.4.1.3) [Homo
sapiens]
Length = 155
Score = 185 bits (464), Expect = 1e-45
Identities = 94/155 (60%), Positives = 114/155 (72%), Gaps = 5/155 (3%)
Query: 263 DEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIGFGRI 322
D R PEL IVP + KAY++ +I+++VD E F E+ P +A N ++GF R+
Sbjct: 5 DPSDRLVPELDTIVPLESTKAYNMVDIIHSVVDERE-----FFEIMPNYAKNIIVGFARM 59
Query: 323 NGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGYLPGVDQESRG 382
NG+TVGIV N P +G LDI+SS K ARFVRFCDAFNIP++TFVDVPG+LPG QE G
Sbjct: 60 NGRTVGIVGNQPKVASGCLDINSSVKGARFVRFCDAFNIPLITFVDVPGFLPGTAQEYGG 119
Query: 383 IIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAM 417
IIRHGAK+LYA+AEATVP VTVI RKAYGGAY M
Sbjct: 120 IIRHGAKLLYAFAEATVPKVTVITRKAYGGAYDVM 154
>emb|CAA74219.1| (Y13917) yngE [Bacillus subtilis]
Length = 280
Score = 169 bits (423), Expect = 9e-41
Identities = 102/289 (35%), Positives = 156/289 (53%), Gaps = 12/289 (4%)
Query: 4 MEKVEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATE 63
M+ ++ +R ++I + G E+ + +KGKL RER+ LL D +E F + +
Sbjct: 1 MDYEKERTERAERIRKGGAEKYHQSNREKGKLFVRERLSLLFDDDIELEDAFFAECMSD- 59
Query: 64 FGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAP 123
LPADGV+T G I G+ V V A D TV GS G KI RI E+A + P
Sbjct: 60 ------GLPADGVVTAIGKIGGQTVCVMANDSTVKAGSWGAKTVEKIIRIQEIAEKLNCP 113
Query: 124 VIGLNDSGGARIQEGVD---SLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIG 180
+I L DS GARI + ++ +G G IF LSG +PQI + GP A G Y PA
Sbjct: 114 LIYLVDSAGARITDQINVFPGRRGAGRIFYNQVKLSGRIPQICLLFGPSAAGGAYIPAFC 173
Query: 181 DFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAHLIGKSDEEVIGL 240
D ++MVD ++ M++ P++ + V G V+ ++GGA +H SG ++ +++EE I L
Sbjct: 174 DIVVMVDGNAS-MYLGSPRMAEMVIGEKVSLEEMGGARMHCSISGCGDILAETEEEAIQL 232
Query: 241 IKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQV 289
++ LSY P+N EK P + K P L D++P + N +D+ ++
Sbjct: 233 VRAYLSYFPANFQEKAP-IHEKRPPKHFETPLADVIPQNQNAPFDMHEL 280
>sp|Q06700|GCDA_ACIFE GLUTACONYL-COA DECARBOXYLASE A SUBUNIT (CARBOXYLTRANSFERASE)
>gi|321991|pir||S29787 UDPgalacturonate decarboxylase
(EC 4.1.1.67) alpha chain - Acidaminococcus fermentans
>gi|49182|emb|CAA49210.1| (X69435) Glutaconyl-CoA
decarboxylase [Acidaminococcus fermentans]
Length = 587
Score = 128 bits (318), Expect = 2e-28
Identities = 129/538 (23%), Positives = 220/538 (39%), Gaps = 56/538 (10%)
Query: 8 EDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGSFVEIGMFVKHRATEFGMD 67
E+++Q K+ + G +A + +G+LTA +RIE L++PGS+ + + + G
Sbjct: 36 EEIHQLIKEAQEAGKADA--DVNKRGELTALQRIEKLVEPGSWRPLNTLFNPQGNKNG-- 91
Query: 68 KRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGL 127
+ ++ G G +NG+ V A D + G+ A + R + A P++ +
Sbjct: 92 -----SVAIVKGLGRVNGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLHVPLVYV 146
Query: 128 NDSGGARIQEG---VDSLKGYGEIFKMNTILSGV-VPQITAIMGPCAGGAVY---SPAI- 179
+ G + E + +G G F N L+ + +P I I G G Y SP +
Sbjct: 147 LNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYHSISPTVI 206
Query: 180 -----------GDFILMVDNPSTFMFITGPQVVKAVTGVDVTPVQLGGALVHAQKSGQAH 228
G I+ NP + + + + G +H ++G
Sbjct: 207 IAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRTGKTEPPGAVDIHYTETGFMR 266
Query: 229 LIGKSDEEVIGLIKRLLSYLPSNNMEKPPRVKPKDEPFRRTPELYDIVPDDPNKAYDVRQ 288
+ S+E V+ IK+ + LP + E RV P +LY +VP + +AYD+
Sbjct: 267 EVYASEEGVLEGIKKYVGMLPKYDPEFF-RVDDPKAPAFPADDLYSMVPLNDKRAYDIYN 325
Query: 289 VIYAIVDRDENGNPDFLELQPYFAPNAVIGFGRINGQTVGIVAN--------------NP 334
VI + D N + E + + P V G ++NG VG+VAN
Sbjct: 326 VIARLFD-----NSELHEYKKGYGPEMVTGLAKVNGLLVGVVANVQGLLMNYPEYKAAGS 380
Query: 335 IHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAY 394
+ + G L K+ FV C +PIV D G G D E ++ G ++Y+
Sbjct: 381 VGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSI 440
Query: 395 AEATVPMVTVILRKAYGGAYLAMGSKHLGADFVFAWPTA--EIAVMGPEGAANIIFRKEI 452
+ +P + LRK A+ +G F+ TA EIAVM E AA ++ + +
Sbjct: 441 QTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNGETAATAMYSRRL 500
Query: 453 AKAENPEEFRKQKIQEYREKF------ANPYVAASRGYIDDVIDPAETRAKIVMALEA 504
AK + + I + + P V A G +D+++D + R + EA
Sbjct: 501 AKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEA 558
>emb|CAC00930.1| (AL390935) probable propionyl-coa carboxylase beta chain,
mitochondrial precursor(ec 6.4.1.3) [Leishmania major]
Length = 106
Score = 108 bits (268), Expect = 1e-22
Identities = 55/110 (50%), Positives = 71/110 (64%), Gaps = 5/110 (4%)
Query: 259 VKPKDEPFRRTPELYDIVPDDPNKAYDVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIG 318
V D +R L +VP + +AYD+R I+ ++D+D F E+QP FA N + G
Sbjct: 2 VPTADNRYRDVSSLNTVVPVEVKEAYDMRDAIFPVIDQDS-----FFEIQPQFAKNIICG 56
Query: 319 FGRINGQTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTFVD 368
F R+ G++V I+AN P AGVLDIDSS K AR VRF DAFNIPI+TFVD
Sbjct: 57 FARVEGRSVCIIANQPKVQAGVLDIDSSVKAARMVRFADAFNIPIITFVD 106
>emb|CAA19885.1| (AL031032) putative protein (fragment) [Arabidopsis thaliana]
Length = 224
Score = 94.0 bits (230), Expect = 4e-18
Identities = 57/154 (37%), Positives = 82/154 (53%), Gaps = 9/154 (5%)
Query: 7 VEDLYQRRKKILQMGGEEAIKKQHDKGKLTARERIELLLDPGS-FVEIGMFVKHRATEFG 65
+ +L KK+L GGEEA+K+ + KL RERI+ LLDPGS F+E+ H E
Sbjct: 72 LSELRSHIKKVLAGGGEEAVKRNRSRNKLLPRERIDRLLDPGSSFLELSQLAGHELYE-- 129
Query: 66 MDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVI 125
LP+ G+ITG G I+GR+ A D TV GG+ + K R E+A P I
Sbjct: 130 ---EPLPSGGIITGIGPIHGRICMFMANDPTVKGGTYYPITIKKHLRAQEIAARCRLPCI 186
Query: 126 GLNDSGGARIQEGVD---SLKGYGEIFKMNTILS 156
L DSGGA + + + + +G +F +++S
Sbjct: 187 YLVDSGGAYLPKQAEVFPDKENFGRVFYNESVMS 220
>pir||H81687 acetyl-coenzyme A carboxylase carboxyl transferase, beta chain
TC0566 [imported] - Chlamydia muridarum (strain Nigg)
>gi|7190606|gb|AAF39403.1| (AE002324) acetyl-coenzyme A
carboxylase carboxyl transferase, beta subunit
[Chlamydia muridarum]
Length = 283
Score = 82.7 bits (201), Expect = 9e-15
Identities = 61/193 (31%), Positives = 101/193 (51%), Gaps = 22/193 (11%)
Query: 34 KLTARERIELLLDPGSFVEIGMFVKHRATEFGMD------------KRDLPADGVITGYG 81
+++A ERI LL D GS+ + +K + +D K + ++GV+ G
Sbjct: 54 RISASERIALLADEGSWNPLFSELKSQDPLHFVDTDTYSNRLEKARKNNPDSEGVLVGNC 113
Query: 82 TINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDS 141
TI G V + DF+ M GS+G + K+ R++E A+++ PVI ++ SGGAR+QE V S
Sbjct: 114 TIGGHSVALAVMDFSFMAGSMGAVVGEKLTRLIEKAIDSRWPVIIVSASGGARMQESVFS 173
Query: 142 LKGYGEIFKMNTILSGV----VPQITAIMGPCAGGAVYS-PAIGDFILMVDNPSTFMFIT 196
L ++ K + L+ + +P I+ + P +GG S ++GD I + P +
Sbjct: 174 LM---QMAKTSAALAKLHEAKLPYISVLTNPTSGGVTASFASLGDVI--IAEPKALICFA 228
Query: 197 GPQVVKAVTGVDV 209
GP+VV V G D+
Sbjct: 229 GPRVVSQVIGEDL 241
>gb|AAB97629.1| (AF121266) malonate decarboxylase beta subunit [Acinetobacter
calcoaceticus]
Length = 295
Score = 79.6 bits (193), Expect = 8e-14
Identities = 60/182 (32%), Positives = 91/182 (49%), Gaps = 14/182 (7%)
Query: 36 TARERIELLLDPGSFVEIGMFVKHRATEFG--MDKRDLPA---DGVITGYGTINGRLVFV 90
TAR RI+ ++D SF EI +K E + D+P DGVI G IN + +
Sbjct: 14 TARARIQAVVDENSFKEI---LKPTEIEVSPHLSALDIPGSFDDGVIIGTAAINQTPIHI 70
Query: 91 YAQDFTVMGGSLGEMHAMKIKRIMELAL-EAGAPVIGLNDSGGARIQEGVDSLKGYGEIF 149
AQ+ MGG++GE+H KI ++ A+ + V+ DSGG R+ E L EI
Sbjct: 71 IAQEGQFMGGAVGEIHGAKIVGLLHKAIQDQSQAVVFFVDSGGVRLHEANAGLIAISEIM 130
Query: 150 K-MNTILSGVVPQITAIMGPCA--GGAVYSPAIGDFILMVDNPSTFMFITGPQVVKAVTG 206
+ M + +P IT I G C GG S + I+M + + ++GP+V++ V G
Sbjct: 131 RAMLQVRHAGIPIITVIGGTCGAFGGMGISACLSSTIIMTEEGR--LALSGPEVIETVKG 188
Query: 207 VD 208
V+
Sbjct: 189 VE 190
>pir||C72124 acetyl-coenzyme A carboxylase carboxyl transferase, beta chain
CP0717 [imported] - Chlamydophila pneumoniae (strains
CWL029 and AR39) >gi|4376314|gb|AAD18211.1| (AE001591)
AcCoA Carboxylase/Transferase Beta [Chlamydophila
pneumoniae CWL029] >gi|7189631|gb|AAF38523.1| (AE002230)
acetyl-coenzyme A carboxylase carboxyl transferase, beta
subunit [Chlamydophila pneumoniae AR39]
>gi|8978432|dbj|BAA98269.1| (AP002545) AcCoA
carboxylase/transferase beta [Chlamydophila pneumoniae
J138]
Length = 308
Score = 79.6 bits (193), Expect = 8e-14
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 22/193 (11%)
Query: 34 KLTARERIELLLDPGSFVEIGMFVKHRATEFGMD------------KRDLPADGVITGYG 81
++TA ER++LL D S+ + +K + +D K ++GVI G
Sbjct: 54 RITAIERVKLLADKDSWRPLYTDLKSQDPLEFIDTDTYANRLEKARKNTTESEGVIVGIC 113
Query: 82 TINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDS 141
TI V + DF M GS+G + K+ R++E A+E PVI ++ SGGAR+QE V S
Sbjct: 114 TIGLHPVALAVMDFNFMAGSMGAVVGEKLTRLIEEAIETRLPVIIVSASGGARMQESVFS 173
Query: 142 LKGYGEIFKMNTILSGV----VPQITAIMGPCAGGAVYS-PAIGDFILMVDNPSTFMFIT 196
L ++ K + L+ + +P I+ + P +GG S A+GD I + P +
Sbjct: 174 LM---QMVKTSAALAKLHEAGLPYISVLTNPTSGGVTASFAALGDII--IAEPKALICFA 228
Query: 197 GPQVVKAVTGVDV 209
GP+VV V G D+
Sbjct: 229 GPRVVAQVIGEDL 241
>emb|CAC00894.1| (AL390935) probable propionyl-coa carboxylase beta chain homolog
[Leishmania major]
Length = 54
Score = 79.2 bits (192), Expect = 1e-13
Identities = 39/54 (72%), Positives = 42/54 (77%)
Query: 386 HGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADFVFAWPTAEIAVMG 439
HGAK+LYAYAEATVP VT+I R AYGGAY M SKHL D +A P AEIAVMG
Sbjct: 1 HGAKLLYAYAEATVPXVTIITRXAYGGAYDVMSSKHLRGDGXYAXPRAEIAVMG 54
>sp|P08193|ACCD_ECOLI ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA
(ACCASE BETA CHAIN) >gi|7428518|pir||XMECBD acetyl-CoA
carboxylase (EC 6.4.1.2), carboxyltransferase beta chain
[validated] - Escherichia coli
>gi|1788655|gb|AAC75376.1| (AE000320) acetylCoA
carboxylase, carboxytransferase component, beta subunit
[Escherichia coli K12] >gi|1799709|dbj|BAA16173.1|
(D90863) acetyl-CoA carboxylase (EC 6.4.1.2),
carboxyltransferase beta chain [Escherichia coli]
Length = 304
Score = 77.6 bits (188), Expect = 3e-13
Identities = 72/243 (29%), Positives = 112/243 (45%), Gaps = 28/243 (11%)
Query: 34 KLTARERIELLLDPGSFVEIGMFV------------KHRATEFGMDKRDLPADGVITGYG 81
++TAR R+ LLD GS VE+G + K++ K D ++ G
Sbjct: 54 RMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKG 113
Query: 82 TINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDS 141
T+ G V A +F MGGS+G + + R +E ALE P+I + SGGAR+QE + S
Sbjct: 114 TLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMS 173
Query: 142 LKGYGEIFKMNTILSGV----VPQITAIMGPCAGGAVYSPA-IGDFILMVDNPSTFMFIT 196
L ++ K + L+ + +P I+ + P GG S A +GD L + P +
Sbjct: 174 LM---QMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGD--LNIAEPKALIGFA 228
Query: 197 GPQVVKAVTGVDVTP-VQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRL--LSYLPSNNM 253
GP+V++ + P Q L+ + G +I + E + L L L LP+ N
Sbjct: 229 GPRVIEQTVREKLPPGFQRSEFLI---EKGAIDMIVRRPEMRLKLASILAKLMNLPAPNP 285
Query: 254 EKP 256
E P
Sbjct: 286 EAP 288
>pir||B71534 probable accoa carboxylase/transferase beta - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328707|gb|AAC67886.1|
(AE001301) AcCoA Carboxylase/Transferase Beta [Chlamydia
trachomatis]
Length = 308
Score = 76.9 bits (186), Expect = 5e-13
Identities = 55/169 (32%), Positives = 91/169 (53%), Gaps = 13/169 (7%)
Query: 46 DPGSFVEIGMFVKHRATEFGMDKRDLPADGVITGYGTINGRLVFVYAQDFTVMGGSLGEM 105
DP +FV+ + +R + D D ++GV+ G TI V + DF+ M GS+G +
Sbjct: 81 DPLNFVDTDTY-PNRLEKARKDNPD--SEGVLVGVCTIGSHPVALAVMDFSFMAGSMGAV 137
Query: 106 HAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDSLKGYGEIFKMNTILSGV----VPQ 161
K+ R++E A+++ PVI ++ SGGAR+QE V SL ++ K + L+ + +P
Sbjct: 138 VGEKLTRLIEKAIDSRLPVIIVSASGGARMQESVFSLM---QMAKTSAALAKLHEAKLPY 194
Query: 162 ITAIMGPCAGGAVYS-PAIGDFILMVDNPSTFMFITGPQVVKAVTGVDV 209
I+ + P +GG S ++GD I + P + GP+VV V G D+
Sbjct: 195 ISVLTNPTSGGVTASFASLGDVI--IAEPKALICFAGPRVVSQVIGEDL 241
>pir||E71875 acetyl-coenzyme A carboxylase chain B - Helicobacter pylori
(strain J99) >gi|4155465|gb|AAD06468.1| (AE001518)
ACETYL-COENZYME A CARBOXYLASE SUBUNIT B [Helicobacter
pylori J99]
Length = 289
Score = 76.1 bits (184), Expect = 9e-13
Identities = 61/198 (30%), Positives = 92/198 (45%), Gaps = 20/198 (10%)
Query: 28 KQHDKGKLTARERIELLLDPGSFVEIGMFV--------------KHRATEFGMDKRDLPA 73
K H ++ A ERIE L D GSF E + K R ++ +KR
Sbjct: 52 KCHYHFRMNATERIEFLCDVGSFEEFDKHLRPNDPLNFVDKESYKQRIKKY--EKRTNRP 109
Query: 74 DGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGA 133
VI+G IN + + DF+ MGGSLG + KI R + A+ ++ ++ SGGA
Sbjct: 110 SSVISGEAKINRMPLQIVVFDFSFMGGSLGSVEGEKIVRAINRAVAKKEALLIVSASGGA 169
Query: 134 RIQEGVDSLKGYGEI-FKMNTILSGVVPQITAIMGPCAGGAVYSPA-IGDFILMVDNPST 191
R+QE SL + +N + +P I+ + P GG S A +GD L++ P
Sbjct: 170 RMQESTYSLMQMAKTSAALNRLSEAKLPFISLLSDPTYGGVSASFAFLGD--LIIAEPGA 227
Query: 192 FMFITGPQVVKAVTGVDV 209
+ GP+V+K G D+
Sbjct: 228 MIGFAGPRVIKQTIGADL 245
>pir||F64638 acetyl-CoA carboxylase beta subunit - Helicobacter pylori (strain
26695) >gi|2314089|gb|AAD07995.1| (AE000604) acetyl-CoA
carboxylase beta subunit (accD) [Helicobacter pylori
26695]
Length = 289
Score = 75.7 bits (183), Expect = 1e-12
Identities = 61/198 (30%), Positives = 92/198 (45%), Gaps = 20/198 (10%)
Query: 28 KQHDKGKLTARERIELLLDPGSFVEIGMFV--------------KHRATEFGMDKRDLPA 73
K H ++ A ERIE L D GSF E + K R ++ +KR
Sbjct: 52 KCHYHFRMKAAERIEFLCDVGSFEEFDKHLRPNDPLNFVDKESYKQRIKKY--EKRTNRP 109
Query: 74 DGVITGYGTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGA 133
VI+G IN + + DF+ MGGSLG + KI R + A+ ++ ++ SGGA
Sbjct: 110 SSVISGEAKINRMPLQIVVFDFSFMGGSLGSVEGEKIVRAINRAVAKREALLIVSASGGA 169
Query: 134 RIQEGVDSLKGYGEI-FKMNTILSGVVPQITAIMGPCAGGAVYSPA-IGDFILMVDNPST 191
R+QE SL + +N + +P I+ + P GG S A +GD L++ P
Sbjct: 170 RMQESTYSLMQMAKTSAALNRLSEAKLPFISLLSDPTYGGVSASFAFLGD--LIIAEPGA 227
Query: 192 FMFITGPQVVKAVTGVDV 209
+ GP+V+K G D+
Sbjct: 228 MIGFAGPRVIKQTIGADL 245
>gb|AAG24832.1| (AF294436) acetyl-CoA carboxylase beta subunit [Bacillus pumilus]
Length = 196
Score = 75.7 bits (183), Expect = 1e-12
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 22/194 (11%)
Query: 35 LTARERIELLLDPGSFVEIGMFV------------KHRATEFGMDKRDLPADGVITGYGT 82
+TAR R+ LLD GS VE+G + K++ K D ++ GT
Sbjct: 1 MTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGT 60
Query: 83 INGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDSL 142
+ G V A +F MGGS+G + + R +E ALE P+I + SGGAR+QE + SL
Sbjct: 61 LYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSL 120
Query: 143 KGYGEIFKMNTILSGV----VPQITAIMGPCAGGAVYSPA-IGDFILMVDNPSTFMFITG 197
++ K + L+ + +P I+ + P GG S A +GD L + P + G
Sbjct: 121 M---QMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGD--LNIAEPKALIGFAG 175
Query: 198 PQVVKAVTGVDVTP 211
P+V++ + P
Sbjct: 176 PRVIEQTVREKLPP 189
>pir||S41121 acetyl-CoA carboxylase (EC 6.4.1.2) - human
>gi|452316|emb|CAA48770.1| (X68968) acetyl-CoA
carboxylase [Homo sapiens] >gi|740964|prf||2006242A
Ac-CoA carboxylase [Homo sapiens]
Length = 2339
Score = 74.5 bits (180), Expect = 3e-12
Identities = 89/394 (22%), Positives = 165/394 (41%), Gaps = 39/394 (9%)
Query: 86 RLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDSLKGY 145
+ +++ QD+T + SL +H I+ E G + D G GV++L+G
Sbjct: 1741 KYLYLTPQDYTRIS-SLNSVHCKHIE-------EGGESRYMITDIIGKDDGLGVENLRGS 1792
Query: 146 GEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILMVDNPSTFMFITGPQVVKAVT 205
G I +++ + I+ + G Y +G ++ V+N + + +TG + V
Sbjct: 1793 GMIAGESSLAYEEIVTISLVTCRAIGIGAYLVRLGQRVIQVEN--SHIILTGASALNKVL 1850
Query: 206 GVDV--TPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSNNMEKPPRVKPKD 263
G +V + QLGG + +G +H+ D E + I LSY+P +N P + P D
Sbjct: 1851 GREVYTSNNQLGGVQI-MHYNGVSHITVPDDFEGVYTILEWLSYMPKDNHSPVPIITPTD 1909
Query: 264 EPFRRTPELYDIVPDDPN--KAYDVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIGFGR 321
R L P DP A + + F E+ +A V G R
Sbjct: 1910 PIDREIEFLPSRAPYDPRWMLAGRPHPTLKGTWQSGFFDHGSFKEIMAPWAQTVVTGRAR 1969
Query: 322 INGQTVGIVA-----------NNPIHLAGVLDI----------DSSDKIARFVRFCDAFN 360
+ G VG++A +P +L I DS+ K A+ ++ +
Sbjct: 1970 LGGIPVGVIAVETRTVEVAVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREK 2029
Query: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVI--LRKAYGGAYLAMG 418
+P++ F + G+ G+ +++ GA ++ + P++ I +R+ GG+++ +
Sbjct: 2030 LPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRQYKQPILIYIRPMRELRGGSWVVID 2089
Query: 419 SK-HLGADFVFAWPTAEIAVMGPEGAANIIFRKE 451
+ + ++A + V+ PEG I FRKE
Sbjct: 2090 ATINPLCIEMYADKESRGGVLEPEGTVEIKFRKE 2123
>gi|4501855 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
>gi|2493312|sp|O00763|COA2_HUMAN ACETYL-COA CARBOXYLASE 2
(ACC-BETA) [INCLUDES: BIOTIN CARBOXYLASE ]
>gi|2138330|gb|AAB58382.1| (U89344) acetyl-CoA
carboxylase [Homo sapiens]
Length = 2483
Score = 74.5 bits (180), Expect = 3e-12
Identities = 89/394 (22%), Positives = 165/394 (41%), Gaps = 39/394 (9%)
Query: 86 RLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDSLKGY 145
+ +++ QD+T + SL +H I+ E G + D G GV++L+G
Sbjct: 1885 KYLYLTPQDYTRIS-SLNSVHCKHIE-------EGGESRYMITDIIGKDDGLGVENLRGS 1936
Query: 146 GEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILMVDNPSTFMFITGPQVVKAVT 205
G I +++ + I+ + G Y +G ++ V+N + + +TG + V
Sbjct: 1937 GMIAGESSLAYEEIVTISLVTCRAIGIGAYLVRLGQRVIQVEN--SHIILTGASALNKVL 1994
Query: 206 GVDV--TPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSNNMEKPPRVKPKD 263
G +V + QLGG + +G +H+ D E + I LSY+P +N P + P D
Sbjct: 1995 GREVYTSNNQLGGVQI-MHYNGVSHITVPDDFEGVYTILEWLSYMPKDNHSPVPIITPTD 2053
Query: 264 EPFRRTPELYDIVPDDPN--KAYDVRQVIYAIVDRDENGNPDFLELQPYFAPNAVIGFGR 321
R L P DP A + + F E+ +A V G R
Sbjct: 2054 PIDREIEFLPSRAPYDPRWMLAGRPHPTLKGTWQSGFFDHGSFKEIMAPWAQTVVTGRAR 2113
Query: 322 INGQTVGIVA-----------NNPIHLAGVLDI----------DSSDKIARFVRFCDAFN 360
+ G VG++A +P +L I DS+ K A+ ++ +
Sbjct: 2114 LGGIPVGVIAVETRTVEVAVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREK 2173
Query: 361 IPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVI--LRKAYGGAYLAMG 418
+P++ F + G+ G+ +++ GA ++ + P++ I +R+ GG+++ +
Sbjct: 2174 LPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRQYKQPILIYIRPMRELRGGSWVVID 2233
Query: 419 SK-HLGADFVFAWPTAEIAVMGPEGAANIIFRKE 451
+ + ++A + V+ PEG I FRKE
Sbjct: 2234 ATINPLCIEMYADKESRGGVLEPEGTVEIKFRKE 2267
>pir||A75422 acetyl-CoA carboxylase carboxyl transferase, beta subunit -
Deinococcus radiodurans (strain R1)
>gi|6458959|gb|AAF10788.1|AE001970_3 (AE001970)
acetyl-CoA carboxylase carboxyl transferase, beta
subunit [Deinococcus radiodurans]
Length = 284
Score = 74.1 bits (179), Expect = 3e-12
Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 34 KLTARERIELLLDPGSFVEIGMFVKHRATEFGMDKRDLPA------------DGVITGYG 81
+L+A R+E+L DPGSF ++ V D P D ++TG
Sbjct: 54 RLSAERRVEVLADPGSFRQLSGQVHPVDPLHFTDTEPYPERLRRAQAKTGRPDAILTGTA 113
Query: 82 TINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDS 141
T++G V + DF GGS+G + +I R E A E+ P++ + SGGAR+QE S
Sbjct: 114 TLHGLPVTLAVMDFAFSGGSMGSVVGEEIARAAEYAAESRTPLLLVAASGGARMQESALS 173
Query: 142 LKGYGEIFKMNTILSG-VVPQITAIMGPCAGGAVYSPA-IGDFILMVDNPSTFMFITGPQ 199
L + LSG VP ++ + P GG S A I D I + P + GP+
Sbjct: 174 LMQMAKTTVALEALSGRGVPYLSLLTDPTTGGVTASFATIADVI--IAEPGALIGFAGPR 231
Query: 200 VVK 202
V++
Sbjct: 232 VIQ 234
>pir||C53376 hypothetical protein (iaaH 3' region) - Pseudomonas syringae pv.
syringae >gi|472562|gb|AAA17680.1| (U04358) ORF3, which
has sequence similarity to a number of
carboxylase/decarboxylase subunits of CoA-requiring
enzymes from prokaryotes and eukaryotes [Pseudomonas
syringae]
Length = 220
Score = 73.7 bits (178), Expect = 5e-12
Identities = 49/192 (25%), Positives = 85/192 (43%), Gaps = 15/192 (7%)
Query: 316 VIGFGRING---------QTVGIVANNPIHLAGVLDIDSSDKIARFVRFCDAFNIPIVTF 366
+ G G I+G Q +VANN H GV+ ++ K+ + ++PI+
Sbjct: 29 ICGAGTIHGFSRDGQPARQVFAVVANNSAHGGGVMYKRTARKMIHVIGLAGKMSLPILFI 88
Query: 367 VDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVILRKAYGGAYLAMGSKHLGADF 426
D+PG + G + E GI A + A+ V + ++ RKAY G AM
Sbjct: 89 ADIPGIMIGEEAERDGIFAAVADLFRAHTRCKVKKLLLVARKAYTGGVYAMSGPGFEPVA 148
Query: 427 VFAWPTAEIAVMGPEGAANIIFRKEIAKAENPEEFRKQKIQEYREKFANPYVAASRGYID 486
V A+P A I G + + ++I K+ + + ++ + E+ +P + +G I
Sbjct: 149 VLAYPDANI------GVFSTLTMEKIIKSSSMTDAQRAVVSALDEEIRSPLLLKDKGLIT 202
Query: 487 DVIDPAETRAKI 498
DVI +TR +
Sbjct: 203 DVISVRDTRQAV 214
>sp|P48937|ACCD_BRANA ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA
(ACCASE BETA CHAIN) >gi|2144155|pir||S66564 acetyl CoA
carboxylase type II beta-carboxyltransferase chain -
rape chloroplast >gi|1069998|emb|CAA90747.1| (Z50868)
acetyl CoA carboxylase carboxyltransferase (beta
subunit) [Brassica napus] >gi|1589046|prf||2210244G
Ac-CoA carboxylase:SUBUNIT=beta [Brassica napus]
Length = 489
Score = 73.7 bits (178), Expect = 5e-12
Identities = 62/188 (32%), Positives = 96/188 (50%), Gaps = 24/188 (12%)
Query: 34 KLTARERIELLLDPGSF--VEIGMF----VKHRATEFGMDKRDLPA-------DGVITGY 80
K+T+ ERIEL +DPGS+ ++ M +K + E KR A D + TG
Sbjct: 253 KMTSSERIELSIDPGSWNGMDEDMVSADPIKFHSREEPYKKRIASAQKKTGLTDAIQTGT 312
Query: 81 GTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVD 140
G +NG V + DF MGGS+G + KI R++E A P+I + SGGAR+QEG
Sbjct: 313 GQLNGIPVALGVMDFQFMGGSMGSVVGDKITRLIEYATNQCLPLILVCSSGGARMQEGSL 372
Query: 141 SLKGYGEIFKMNTIL-----SGVVPQITAIMGPCAGGAVYS-PAIGDFILMVDNPSTFMF 194
SL ++ K++++L S + I+ + P GG S +GD I + P ++
Sbjct: 373 SLM---QMAKISSVLCDYQSSKKLFYISILTSPTTGGVTASLGMLGDII--IAEPYAYIA 427
Query: 195 ITGPQVVK 202
G +V++
Sbjct: 428 FAGKRVIE 435
>pir||G81429 acetyl-CoA carboxylase (EC 6.4.1.2) carboxyltransferase beta chain
Cj0127c [similarity] - Campylobacter jejuni (strain NCTC
11168) >gi|6967621|emb|CAB72611.1| (AL139074)
acetyl-coenzyme A carboxylase carboxyl transferase
subunit beta [Campylobacter jejuni]
Length = 280
Score = 73.4 bits (177), Expect = 6e-12
Identities = 58/190 (30%), Positives = 94/190 (48%), Gaps = 16/190 (8%)
Query: 34 KLTARERIELLLDPGSFVEIGM---------FVKHRATEFGMDKRDLPA---DGVITGYG 81
+++A ERI+LL D GSF+E FV ++ + + + + VI+G
Sbjct: 54 RISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKTGRKSSVISGEC 113
Query: 82 TINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDS 141
ING + DF+ MGGSLG + KI R ++ A+ + ++ ++ SGGAR+QE S
Sbjct: 114 EINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTSLVIVSASGGARMQESTYS 173
Query: 142 LKGYGEIFKMNTILS-GVVPQITAIMGPCAGGAVYSPA-IGDFILMVDNPSTFMFITGPQ 199
L + +LS +P I+ + P GG S A +GD L++ P + G +
Sbjct: 174 LMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGD--LIIAEPEALVGFAGAR 231
Query: 200 VVKAVTGVDV 209
V+K G D+
Sbjct: 232 VIKQTIGADL 241
>gi|11497537 acetyl-coA carboxylase beta subunit [Spinacia oleracea]
>gi|7636118|emb|CAB88738.1| (AJ400848) acetyl-coA
carboxylase beta subunit [Spinacia oleracea]
Length = 522
Score = 72.6 bits (175), Expect = 1e-11
Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 24/188 (12%)
Query: 34 KLTARERIELLLDPG----------SFVEIGMFVKHRATEFGMDKRDLPA---DGVITGY 80
K+++ +RIELL+DPG S IG + A + +D + + V TG
Sbjct: 285 KISSSDRIELLIDPGTWNPMDDDMVSMDPIGFHSEEEAYKDRIDSYQIKTGLTEAVQTGI 344
Query: 81 GTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVD 140
G +NG V + DF MGGS+G + KI R++E A P+I + SGGAR+QEG
Sbjct: 345 GQLNGIPVAIGVMDFQFMGGSMGSVVGEKITRLIEYASNKFIPLIIVCASGGARMQEGSL 404
Query: 141 SLKGYGEIFKMNTIL-----SGVVPQITAIMGPCAGGAVYS-PAIGDFILMVDNPSTFMF 194
SL ++ K++++L + + ++ + P GG S +GD I + P+ ++
Sbjct: 405 SLM---QMAKISSVLYDYQSNKKLFYVSILTSPTTGGVTASFGMLGDII--IAEPNAYIA 459
Query: 195 ITGPQVVK 202
G +V++
Sbjct: 460 FAGKRVIE 467
>pir||T07012 acetyl-CoA carboxylase (EC 6.4.1.2) - potato chloroplast
>gi|3243216|gb|AAC23997.1| (AF069288) acetyl-coenzyme A
carboxylase carboxyl transferase [Solanum tuberosum]
Length = 507
Score = 71.8 bits (173), Expect = 2e-11
Identities = 57/185 (30%), Positives = 91/185 (48%), Gaps = 18/185 (9%)
Query: 34 KLTARERIELLLDPGSF-------VEIGMFVKHRATEFGMDKRDLP------ADGVITGY 80
K+++ +RIELL+DPG++ V + H E D+ D + V TG
Sbjct: 269 KMSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAVQTGI 328
Query: 81 GTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVD 140
G +NG V + DF MGGS+G + KI R++E A P+I + SGGAR+QEG
Sbjct: 329 GQLNGIPVAIGVMDFQFMGGSMGSVVGEKITRLIEHAANQNLPLIIVCASGGARMQEGSL 388
Query: 141 SLKGYGEIFK--MNTILSGVVPQITAIMGPCAGGAVYS-PAIGDFILMVDNPSTFMFITG 197
SL +I + L+ + ++ + P GG S +GD I + P+ ++ G
Sbjct: 389 SLMQMAKISSALYDYQLNKKLFYVSILTSPTTGGVTASFGMLGDII--IAEPNAYIAFAG 446
Query: 198 PQVVK 202
+V++
Sbjct: 447 KRVIE 451
>gi|11465966 acetyl-CoA carboxylase beta subunit [Nicotiana tabacum]
>gi|141631|sp|P12219|ACCD_TOBAC ACETYL-COENZYME A
CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA (ACCASE
BETA CHAIN) >gi|82218|pir||A05196 hypothetical protein
512 - common tobacco chloroplast
>gi|11842|emb|CAA77362.1| (Z00044) acetyl-CoA
carboxylase beta subunit [Nicotiana tabacum]
>gi|225210|prf||1211235AQ ORF 512 [Nicotiana tabacum]
Length = 512
Score = 71.0 bits (171), Expect = 3e-11
Identities = 57/185 (30%), Positives = 91/185 (48%), Gaps = 18/185 (9%)
Query: 34 KLTARERIELLLDPGSF-------VEIGMFVKHRATEFGMDKRDLP------ADGVITGY 80
K+++ +RIELL+DPG++ V + H E D+ D + V TG
Sbjct: 274 KMSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAVQTGI 333
Query: 81 GTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVD 140
G +NG V + DF MGGS+G + KI R++E A P+I + SGGAR+QEG
Sbjct: 334 GQLNGIPVAIGVMDFQFMGGSMGSVVGEKITRLIEYAANQILPLIIVCASGGARMQEGSL 393
Query: 141 SLKGYGEIFK--MNTILSGVVPQITAIMGPCAGGAVYS-PAIGDFILMVDNPSTFMFITG 197
SL +I + L+ + ++ + P GG S +GD I + P+ ++ G
Sbjct: 394 SLMQMAKISSALYDYQLNKKLFYVSILTSPTTGGVTASFGMLGDII--IAEPNAYIAFAG 451
Query: 198 PQVVK 202
+V++
Sbjct: 452 KRVIE 456
>gb|AAA23965.1| (M68935) acetyl-CoA carboxylase beta subunit [Escherichia coli]
Length = 304
Score = 71.0 bits (171), Expect = 3e-11
Identities = 54/165 (32%), Positives = 81/165 (48%), Gaps = 20/165 (12%)
Query: 34 KLTARERIELLLDPGSFVEIGMFV------------KHRATEFGMDKRDLPADGVITGYG 81
++TAR R+ LLD GS VE+G V K++ K D ++ G
Sbjct: 54 RMTARNRLHSLLDEGSLVELGSSVEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKG 113
Query: 82 TINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDS 141
T+ G V A +F MGGS+G + + R +E ALE P+I + SGGAR+QE + S
Sbjct: 114 TLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMS 173
Query: 142 LKGYGEIFKMNTILSGV----VPQITAIMGPCAGGAVYSPA-IGD 181
L ++ K + L+ + +P I+ + P GG S A +GD
Sbjct: 174 LM---QMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGD 215
>gi|11466711 ORF316 [Marchantia polymorpha] >gi|141629|sp|P12217|ACCD_MARPO
ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE
SUBUNIT BETA (ACCASE BETA CHAIN) >gi|81350|pir||A05043
finger protein zfpA - liverwort (Marchantia polymorpha)
chloroplast >gi|11681|emb|CAA28093.1| (X04465) ORF316
[Marchantia polymorpha]
Length = 316
Score = 70.6 bits (170), Expect = 4e-11
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 23/187 (12%)
Query: 34 KLTARERIELLLDPGSFVEIGMFVKHRATEFGMD------------KRDLPADGVITGYG 81
++++ ERIELL+D G++ + + R D KR D + TG G
Sbjct: 78 QMSSTERIELLIDRGTWYPMDEDMTARDVLKFSDEDSYKNRIAFYQKRTGLTDAIQTGIG 137
Query: 82 TINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDS 141
+NG + + DF MGGS+G + KI R++E A A P+I + SGGAR+QEG S
Sbjct: 138 QLNGIPIALGVMDFQFMGGSMGSVVGEKITRLIEYATRASMPLIIVCSSGGARMQEGTLS 197
Query: 142 LKGYGEIFKMNTILSGVVPQ-----ITAIMGPCAGGAVYS-PAIGDFILMVDNPSTFMFI 195
L ++ K++++L Q I + P GG S +GD I + P ++
Sbjct: 198 LM---QMAKISSVLQIHQAQKRLLYIAILTYPTTGGVTASFGMLGDII--IAEPKAYIAF 252
Query: 196 TGPQVVK 202
G +V++
Sbjct: 253 AGKRVIE 259
>pir||I41212 folC expression protein - Escherichia coli
>gi|146008|gb|AAA23801.1| (J02808) protein required for
folC expression [Escherichia coli]
>gi|146019|gb|AAA23807.1| (M32445) protein of unknown
function [Escherichia coli]
Length = 304
Score = 70.2 bits (169), Expect = 5e-11
Identities = 56/177 (31%), Positives = 85/177 (47%), Gaps = 22/177 (12%)
Query: 34 KLTARERIELLLDPGSFVEIGMFV------------KHRATEFGMDKRDLPADGVITGYG 81
++TAR R+ LLD GS VE+G + K++ K D ++ G
Sbjct: 54 RMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKG 113
Query: 82 TINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVDS 141
T+ G V A +F MGGS+G + + R +E ALE P+I + SGGAR+QE + S
Sbjct: 114 TLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMS 173
Query: 142 LKGYGEIFKMNTILSGV----VPQITAIMGPCAGGAVYSPA-IGDFILMVDNPSTFM 193
L ++ K + L+ + +P I+ + P GG S A +GD L + P M
Sbjct: 174 LM---QMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGD--LNIAEPKALM 225
>gi|7525042 carboxytransferase beta subunit [Arabidopsis thaliana]
>gi|6685210|sp|P56765|ACCD_ARATH ACETYL-COENZYME A
CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA (ACCASE
BETA CHAIN) >gi|5881703|dbj|BAA84394.1| (AP000423)
carboxytransferase beta subunit [Arabidopsis thaliana]
>gi|7021219|gb|AAF35256.1|AF056971_1 (AF056971)
carboxyltransferase beta subunit [Arabidopsis thaliana]
Length = 488
Score = 69.5 bits (167), Expect = 9e-11
Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 24/188 (12%)
Query: 34 KLTARERIELLLDPGSF-------VEIGMFVKHRATEFGMDKRDLP------ADGVITGY 80
K+++ ERIEL +DPG++ V H E ++ D D V TG
Sbjct: 255 KMSSSERIELSIDPGTWNPMDEDMVSADPIKFHSKEEPYKNRIDSAQKTTGLTDAVQTGT 314
Query: 81 GTINGRLVFVYAQDFTVMGGSLGEMHAMKIKRIMELALEAGAPVIGLNDSGGARIQEGVD 140
G +NG V + DF MGGS+G + KI R++E A P+I + SGGAR+QEG
Sbjct: 315 GQLNGIPVALGVMDFRFMGGSMGSVVGEKITRLIEYATNQCLPLILVCSSGGARMQEGSL 374
Query: 141 SLKGYGEIFKMNTIL-----SGVVPQITAIMGPCAGGAVYS-PAIGDFILMVDNPSTFMF 194
SL ++ K++++L S + I+ + P GG S +GD I + P ++
Sbjct: 375 SLM---QMAKISSVLCDYQSSKKLFYISILTSPTTGGVTASFGMLGDII--IAEPYAYIA 429
Query: 195 ITGPQVVK 202
G +V++
Sbjct: 430 FAGKRVIE 437
>pir||T32413 probable acetyl-CoA carboxylase (EC 6.4.1.2) W09B6.1 [similarity] -
Caenorhabditis elegans >gi|9803022|gb|AAG00029.1|
(AF025469) Contains similarity to Pfam domain: PF00364
(biotin_req_enzy), Score=14.2, E-value=0.00077, N=1
[Caenorhabditis elegans]
Length = 2054
Score = 69.5 bits (167), Expect = 9e-11
Identities = 92/397 (23%), Positives = 166/397 (41%), Gaps = 60/397 (15%)
Query: 138 GVDSLKGYGEIFKMNTILSGVVPQITAIMGPCAGGAVYSPAIGDFILMVDNPSTFMFITG 197
GV++L+G G I VP + G G Y+ + I V + + + +TG
Sbjct: 1548 GVENLQGSGLIAGETARAYAEVPTYCYVTGRSVGIGAYTARLAHRI--VQHKQSHLILTG 1605
Query: 198 PQVVKAVTGVDV--TPVQLGGALVHAQKSGQAHLIGKSDEEVIGLIKRLLSYLPSNNMEK 255
+ + + G V + QLGG V ++G H + +D E I + R +S+LP+ E
Sbjct: 1606 YEALNTLLGKKVYTSNNQLGGPEVMF-RNGVTHAVVDNDLEGIAKVIRWMSFLPTPTEEF 1664
Query: 256 PPRVKPKDEPFRRTPELYDIVPDDPNK-AYDVRQVIYAIVDRDENGNPD---FLELQPYF 311
P K D+ R ++P D + YDVR +I + ++ G D F E+ +
Sbjct: 1665 PFFSKHGDDCSARDV----VIPSDSEQNTYDVRDLIDSKNLSNQTGICDTMSFDEICGDW 1720
Query: 312 APNAVIGFGRINGQTVGIVANNPIHLAGVLDID---------------------SSDKIA 350
A + V G R+ G +G+V++ + + ++ D S+ K A
Sbjct: 1721 AKSIVAGRARLCGIPIGVVSSEFRNFSTIVPADPAIDGSQVQNTQRAGQVWYPDSAFKTA 1780
Query: 351 RFVRFCDAFNIPIVTFVDVPGYLPGVDQESRGIIRHGAKVLYAYAEATVPMVTVI--LRK 408
+ + N+P++ + G+ G +++ GA+++ A A P++ I +
Sbjct: 1781 EAINDLNKENLPLMIIASLRGFSGGQKDMYDMVLKFGAQIVDALAVYNRPVIVYIPEAGE 1840
Query: 409 AYGGAYLAMGSK------HLGADFVFAWPTAEIAVMGPEGAANIIFRK----EIAKAENP 458
GGA+ + SK HL AD + ++ P I FRK E+ K +P
Sbjct: 1841 LRGGAWAVLDSKIRPEFIHLVAD-----EKSRGGILEPNAVVGIKFRKPMMMEMMKRSDP 1895
Query: 459 ---------EEFRKQKIQEYREKFANPYVAASRGYID 486
E +++++E E+ + Y AS + D
Sbjct: 1896 TYSKLSSSTEPEAREQLEERYEELSKTYRNASVEFAD 1932
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202250123
Number of Sequences: 2977
Number of extensions: 9157225
Number of successful extensions: 26128
Number of sequences better than 1.0e-10: 85
Number of HSP's better than 0.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 25708
Number of HSP's gapped (non-prelim): 99
length of query: 522
length of database: 189,106,746
effective HSP length: 56
effective length of query: 466
effective length of database: 155,591,474
effective search space: 72505626884
effective search space used: 72505626884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)