BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1770 (PAB1770) DE:Hypothetical protein
         (117 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75135 hypothetical protein PAB1770 - Pyrococcus abyssi (st...   231  1e-60
pir||B71074 hypothetical protein PH1285 - Pyrococcus horikoshii ...   159  1e-38

>pir||G75135 hypothetical protein PAB1770 - Pyrococcus abyssi (strain Orsay)
           >gi|5458311|emb|CAB49800.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 117
           
 Score =  231 bits (584), Expect = 1e-60
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MGAILEGFYLTILGVAIVFLVLSILAVVMYGIGEFERRSKREVETKEVKEEREEEEKVET 60
           MGAILEGFYLTILGVAIVFLVLSILAVVMYGIGEFERRSKREVETKEVKEEREEEEKVET
Sbjct: 1   MGAILEGFYLTILGVAIVFLVLSILAVVMYGIGEFERRSKREVETKEVKEEREEEEKVET 60

Query: 61  LEKEEDERVAVITAAILAYLSQRVPKEVPIKVKPSQNWWLSSLTREIDEIENFNYRW 117
           LEKEEDERVAVITAAILAYLSQRVPKEVPIKVKPSQNWWLSSLTREIDEIENFNYRW
Sbjct: 61  LEKEEDERVAVITAAILAYLSQRVPKEVPIKVKPSQNWWLSSLTREIDEIENFNYRW 117


>pir||B71074 hypothetical protein PH1285 - Pyrococcus horikoshii
           >gi|3257705|dbj|BAA30388.1| (AP000005) 108aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 108
           
 Score =  159 bits (397), Expect = 1e-38
 Identities = 82/116 (70%), Positives = 94/116 (80%), Gaps = 8/116 (6%)

Query: 1   MGAILEGFYLTILGVAIVFLVLSILAVVMYGIGEFERRSKREVETKEVKEEREEEEKVET 60
           MGA+LEG Y+TILGV IVF+VLSILA VMYGIGEFERR+        V +E++ EE  E 
Sbjct: 1   MGALLEGLYITILGVTIVFIVLSILAAVMYGIGEFERRT--------VGKEKKPEEVKEV 52

Query: 61  LEKEEDERVAVITAAILAYLSQRVPKEVPIKVKPSQNWWLSSLTREIDEIENFNYR 116
            + E+ E+VAVITAAIL YLS+R PKEVPIKVKPS NWWLSSLTREI+EIENFNYR
Sbjct: 53  EKTEDYEKVAVITAAILTYLSKRTPKEVPIKVKPSHNWWLSSLTREIEEIENFNYR 108


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.135    0.374 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40101909
Number of Sequences: 2977
Number of extensions: 1570508
Number of successful extensions: 41732
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41727
Number of HSP's gapped (non-prelim): 2
length of query: 117
length of database: 189,106,746
effective HSP length: 56
effective length of query: 61
effective length of database: 155,591,474
effective search space: 9491079914
effective search space used: 9491079914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 160 (66.7 bits)