BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1771 (mmdC) DE:METHYLMALONYL-COA DECARBOXYLASE GAMMA CHAIN
(145 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75135 methylmalonyl-coa decarboxylase gamma chain PAB1771 ... 288 2e-77
pir||A71074 probable methylmalonyl-CoA decarboxylase gamma chain... 221 3e-57
pir||F71133 probable oxaloacetate decarboxylase alpha chain - Py... 132 2e-30
pir||D49094 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) gamma ... 108 3e-23
pir||C72341 propionyl-CoA carboxylase, gamma subunit - Thermotog... 100 1e-20
gi|11499798 methylmalonyl-CoA decarboxylase, biotin carboxyl car... 98 6e-20
pir||T44984 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) gamma ... 96 1e-19
sp|P13187|DCOA_KLEPN OXALOACETATE DECARBOXYLASE ALPHA CHAIN >gi|... 96 2e-19
gi|11499667 oxaloacetate decarboxylase, biotin carboxyl carrier ... 93 1e-18
gb|AAC69172.1| (AF030576) glutaconyl-CoA decarboxylase gamma sub... 93 2e-18
gb|AAA89090.1| (U47626) Biotin purification tag [Cloning vector ... 89 2e-17
sp|P02904|BCCP_PROFR BIOTIN CARBOXYL CARRIER PROTEIN OF METHYLMA... 89 3e-17
gb|AAF14626.1|AF200362_2 (AF200362) oxaloacetate decarboxylase a... 85 3e-16
sp|P29337|BCCP_STRMU BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) >gi|... 83 1e-15
pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarbo... 82 2e-15
pir||B70432 pyruvate carboxylase c-terminal domain - Aquifex aeo... 81 5e-15
sp|Q03030|DCOA_SALTY OXALOACETATE DECARBOXYLASE ALPHA CHAIN >gi|... 80 1e-14
pir||D81367 probable pyruvate carboxylase (EC 6.4.1.1) B chain C... 76 2e-13
pir||T44608 pyruvate carboxylase (EC 6.4.1.1) [imported] - Bacil... 75 3e-13
pir||A83395 probable acyl-CoA carboxylase alpha chain PA2012 [im... 75 4e-13
pir||G82308 oxaloacetate decarboxylase, alpha chain VC0550 [simi... 75 5e-13
gb|AAA85920.1| (U00012) bccA; B1308_C1_129 [Mycobacterium leprae] 73 1e-12
sp|P46392|BCCA_MYCLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE AL... 73 1e-12
sp|P43874|BCCP_HAEIN BIOTIN CARBOXYL CARRIER PROTEIN OF ACETYL-C... 73 1e-12
pir||F70439 oxaloacetate decarboxylase alpha chain - Aquifex aeo... 73 1e-12
dbj|BAA12072.1| (D83706) pyruvate carboxylase [Bacillus stearoth... 72 3e-12
pir||F70980 probable accA3 protein - Mycobacterium tuberculosis ... 71 4e-12
gb|AAF98277.1|AF197933_7 (AF197933) biotin carboxyl carrier prot... 71 4e-12
dbj|BAB06344.1| (AP001516) pyruvate carboxylase [Bacillus halodu... 71 4e-12
pir||E81033 acetyl-CoA carboxylase, biotin carboxyl carrier prot... 71 7e-12
sp|Q58628|PYCB_METJA PYRUVATE CARBOXYLASE SUBUNIT B (PYRUVIC CAR... 70 1e-11
gb|AAF61288.1|AF064528_1 (AF064528) 3-methylcrotonyl-CoA carboxy... 69 3e-11
pir||F82966 probable transcarboxylase subunit PA5435 [imported] ... 69 3e-11
pir||F83284 probable biotin carboxylase/biotin carboxyl carrier ... 68 5e-11
emb|CAA67994.1| (X99678) oxaloacetate decarboxylase alpha-chain ... 67 8e-11
>pir||F75135 methylmalonyl-coa decarboxylase gamma chain PAB1771 - Pyrococcus
abyssi (strain Orsay) >gi|5458310|emb|CAB49799.1|
(AJ248285) METHYLMALONYL-COA DECARBOXYLASE GAMMA CHAIN
[Pyrococcus abyssi]
Length = 145
Score = 288 bits (729), Expect = 2e-77
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MKVKVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPT 60
MKVKVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPT
Sbjct: 1 MKVKVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPT 60
Query: 61 PTPVQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPR 120
PTPVQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPR
Sbjct: 61 PTPVQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPR 120
Query: 121 DGVVKRILVKEGDAVDTGTPLIELG 145
DGVVKRILVKEGDAVDTGTPLIELG
Sbjct: 121 DGVVKRILVKEGDAVDTGTPLIELG 145
>pir||A71074 probable methylmalonyl-CoA decarboxylase gamma chain - Pyrococcus
horikoshii >gi|3257704|dbj|BAA30387.1| (AP000005) 149aa
long hypothetical methylmalonyl-CoA decarboxylase gamma
chain [Pyrococcus horikoshii]
Length = 149
Score = 221 bits (557), Expect = 3e-57
Identities = 109/146 (74%), Positives = 125/146 (84%), Gaps = 1/146 (0%)
Query: 1 MKVKVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPT 60
MKVKVVVNGKEYEV+VEEVMPGKFRVTLEG+TYEVE + G +P Q QV TPAPTP P
Sbjct: 4 MKVKVVVNGKEYEVEVEEVMPGKFRVTLEGETYEVETSAGFVTSPKQVQVPTPAPTPAPA 63
Query: 61 PTPVQAPT-TPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAP 119
PTP AP + + SENVV+APMPGKVL++LV+ G +V++GQGLL+LEAMKMENEIP+P
Sbjct: 64 PTPTPAPAPSSKTVVSENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSP 123
Query: 120 RDGVVKRILVKEGDAVDTGTPLIELG 145
RDGVVKRILVKEG+AVDTG PLIELG
Sbjct: 124 RDGVVKRILVKEGEAVDTGQPLIELG 149
>pir||F71133 probable oxaloacetate decarboxylase alpha chain - Pyrococcus
horikoshii >gi|3257245|dbj|BAA29928.1| (AP000003) 571aa
long hypothetical oxaloacetate decarboxylase alpha chain
[Pyrococcus horikoshii]
Length = 571
Score = 132 bits (329), Expect = 2e-30
Identities = 74/130 (56%), Positives = 90/130 (68%), Gaps = 9/130 (6%)
Query: 16 VEEVMPGK-FRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTPTPVQAPTTPQVQA 74
VEE GK ++ + GK +EV GI+ P P P P P Q P V
Sbjct: 449 VEEKPKGKPIKIYINGKEFEVFVE-GIEFEP-------PKPKPQVQAIPSQPPKREVVAP 500
Query: 75 SENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDA 134
S +VV+APMPGKVL++LV+ G +V++GQGLL+LEAMKMENEIP+PRDGVVKRILVKEG+A
Sbjct: 501 SGSVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA 560
Query: 135 VDTGTPLIEL 144
VDTG PLIEL
Sbjct: 561 VDTGQPLIEL 570
>pir||D49094 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) gamma chain -
Veillonella parvula >gi|415596|gb|AAC36823.1| (L22208)
methylmalonyl-CoA decarboxylase gamma-subunit
[Veillonella parvula] >gi|415918|emb|CAA80875.1|
(Z24754) gamma-subunit,methylmalonyl-CoA decarboxylase
[Veillonella parvula]
Length = 129
Score = 108 bits (267), Expect = 3e-23
Identities = 58/127 (45%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 23 KFRVTLEGKTYEVEAN----LGIQVAPVQTQVATPAPTPTPTPTPVQAPTTPQVQASENV 78
KF VT+ G Y+VE N AP A PAP P P P A V A
Sbjct: 3 KFNVTVNGTAYDVEVNEVKAAAPAAAPKAAPAAAPAPKAAPAPAPAPAAAAAPVPAGAET 62
Query: 79 VTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAVDTG 138
V APMPGK+L + V GQ VK G+ LLILEAMKM+NEI AP D VV + V V TG
Sbjct: 63 VKAPMPGKILSVAVSAGQAVKKGETLLILEAMKMQNEIAAPHDAVVSEVRVSANQTVSTG 122
Query: 139 TPLIELG 145
++ LG
Sbjct: 123 DDMVVLG 129
>pir||C72341 propionyl-CoA carboxylase, gamma subunit - Thermotoga maritima
(strain MSB8) >gi|4981242|gb|AAD35799.1|AE001743_1
(AE001743) propionyl-CoA carboxylase, gamma subunit
[Thermotoga maritima]
Length = 134
Score = 99.8 bits (245), Expect = 1e-20
Identities = 60/143 (41%), Positives = 78/143 (53%), Gaps = 13/143 (9%)
Query: 2 KVKVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTP 61
K +VVVNGKEY V+VEE+ + + E EV T P P
Sbjct: 4 KFRVVVNGKEYIVEVEEIGNVRKKEPAEKPAKEVSQK-------------TVQEIPKEEP 50
Query: 62 TPVQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRD 121
PV E +V APM G VLK+LV+EGQ+V +G LL+ EAMKMENE+ +
Sbjct: 51 KPVVLEREKSSDQEEKLVKAPMAGIVLKVLVKEGQKVNVGDKLLVFEAMKMENELQSEFS 110
Query: 122 GVVKRILVKEGDAVDTGTPLIEL 144
G VK ILVKEGD ++TG L+++
Sbjct: 111 GTVKEILVKEGDNIETGQILMKI 133
>gi|11499798 methylmalonyl-CoA decarboxylase, biotin carboxyl carrier subunit
(mmdC) [Archaeoglobus fulgidus] >gi|7442285|pir||H69526
methylmalonyl-CoA decarboxylase, biotin carboxyl carrier
subunit (mmdC) homolog - Archaeoglobus fulgidus
>gi|2648307|gb|AAB89036.1| (AE000952) methylmalonyl-CoA
decarboxylase, biotin carboxyl carrier subunit (mmdC)
[Archaeoglobus fulgidus]
Length = 140
Score = 97.5 bits (239), Expect = 6e-20
Identities = 58/144 (40%), Positives = 81/144 (55%), Gaps = 5/144 (3%)
Query: 1 MKVKVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPT 60
MK +V V GK+YEV+VEEV P F V + GK +E + + A
Sbjct: 1 MKYEVKVQGKKYEVEVEEVSPMVFEVKVNGKKAVIEVKKKFEFKEFEK-----ADIRERR 55
Query: 61 PTPVQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPR 120
+ +V+A+ +TAPM G V KIL + G++VK G+ +LI+EAMKMEN I +P
Sbjct: 56 FAERREEARAEVKATGKAITAPMAGVVTKILKKVGEKVKAGETVLIIEAMKMENPIASPE 115
Query: 121 DGVVKRILVKEGDAVDTGTPLIEL 144
DG + I+VKEGD V +G L+ L
Sbjct: 116 DGEIAEIVVKEGDKVASGDVLVYL 139
>pir||T44984 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) gamma chain
[imported] - Propionigenium modestum
>gi|2706400|emb|CAA05139.1| (AJ002015) methylmalonyl-CoA
decarboxylase, gamma-subunit [Propionigenium modestum]
Length = 134
Score = 96.3 bits (236), Expect = 1e-19
Identities = 59/146 (40%), Positives = 73/146 (49%), Gaps = 22/146 (15%)
Query: 4 KVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPT---PTPT 60
KV VNG EY+V VEE+ + AP A PAP P
Sbjct: 5 KVTVNGTEYDVAVEEM-----------------GGAAVASAPAARPAAAPAPAAPKPAAA 47
Query: 61 PTPVQAP--TTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPA 118
P P AP T A N VTAPMPG +L + G +V G L++LEAMKMENEI A
Sbjct: 48 PAPAPAPKTTAAGAGAGANTVTAPMPGTILNVGCHAGDKVSKGDTLVVLEAMKMENEIMA 107
Query: 119 PRDGVVKRILVKEGDAVDTGTPLIEL 144
P DGVV + V++G +V+ G L+ L
Sbjct: 108 PHDGVVSEVRVQQGASVNAGDILVVL 133
>sp|P13187|DCOA_KLEPN OXALOACETATE DECARBOXYLASE ALPHA CHAIN >gi|78989|pir||A28088
oxaloacetate decarboxylase (EC 4.1.1.3) alpha chain -
Klebsiella pneumoniae >gi|149289|gb|AAA25120.1| (J03885)
oxalacetate decarboxylase precursor [Klebsiella
pneumoniae]
Length = 596
Score = 95.6 bits (234), Expect = 2e-19
Identities = 54/123 (43%), Positives = 69/123 (55%), Gaps = 4/123 (3%)
Query: 22 GKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTPTPVQAPTTPQVQASENVVTA 81
G + V +EGK + V+ + G V+ Q+ AP P P P P AP + VTA
Sbjct: 477 GVYTVEVEGKAFVVKVSDGGDVS----QLTAAAPAPAPAPAPASAPAAAAPAGAGTPVTA 532
Query: 82 PMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAVDTGTPL 141
P+ G + K+L EGQ V G+ LLILEAMKME EI A + G V+ I VK GDAV G L
Sbjct: 533 PLAGTIWKVLASEGQTVAAGEVLLILEAMKMETEIRAAQAGTVRGIAVKAGDAVAVGDTL 592
Query: 142 IEL 144
+ L
Sbjct: 593 MTL 595
>gi|11499667 oxaloacetate decarboxylase, biotin carboxyl carrier subunit,
putative [Archaeoglobus fulgidus]
>gi|7442287|pir||D69510 oxaloacetate decarboxylase,
biotin carboxyl carrier subunit homolog - Archaeoglobus
fulgidus >gi|2648449|gb|AAB89171.1| (AE000960)
oxaloacetate decarboxylase, biotin carboxyl carrier
subunit, putative [Archaeoglobus fulgidus]
Length = 142
Score = 93.2 bits (228), Expect = 1e-18
Identities = 52/135 (38%), Positives = 83/135 (60%), Gaps = 7/135 (5%)
Query: 4 KVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTPTP 63
++ V+G +++V VE++ G +RV + K EV V + + P+ P P+
Sbjct: 5 RIRVDGADFKVGVEKLREGVYRVRVGDKEAEVV------VEDIYERAERPSFEPV-APSA 57
Query: 64 VQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGV 123
+ + ++ A EN VT+ +PG VLKILV+ G +VK G+ ++I+E+MKMENEI +P +GV
Sbjct: 58 LLSEVKEELTAPENAVTSMLPGVVLKILVKPGDKVKAGEPVVIVESMKMENEIVSPTEGV 117
Query: 124 VKRILVKEGDAVDTG 138
V ILVKEG ++ G
Sbjct: 118 VAEILVKEGQRIEAG 132
>gb|AAC69172.1| (AF030576) glutaconyl-CoA decarboxylase gamma subunit
[Acidaminococcus fermentans]
Length = 145
Score = 92.8 bits (227), Expect = 2e-18
Identities = 57/144 (39%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 2 KVKVVVNGKEYEVDVEEVMPGKFRV-TLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPT 60
K V VNG Y V+VEEV A + AP PA P
Sbjct: 3 KFNVNVNGTVYTVEVEEVGGAVTAAPAAPAAPAAAPAAAPVAAAPAAAPAPAPAAAPAAA 62
Query: 61 PTPVQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPR 120
P P P A V+APMPGK+L + V+ G +V+ G LLILEAMKM+NEI AP
Sbjct: 63 PAPAAKPAA-AAPAGSVTVSAPMPGKILSVNVKPGDKVEAGDVLLILEAMKMQNEIMAPE 121
Query: 121 DGVVKRILVKEGDAVDTGTPLIEL 144
DG V + V GD V TG ++ L
Sbjct: 122 DGTVSEVRVNAGDTVATGDVMVIL 145
>gb|AAA89090.1| (U47626) Biotin purification tag [Cloning vector PinPoint Xa-1]
>gi|1200494|gb|AAA89092.1| (U47627) Biotin purification
tag [Cloning vector PinPoint Xa-2]
>gi|1200497|gb|AAA89094.1| (U47628) Biotin purification
tag [Cloning vector PinPoint Xa-3]
Length = 129
Score = 88.9 bits (217), Expect = 2e-17
Identities = 60/145 (41%), Positives = 78/145 (53%), Gaps = 23/145 (15%)
Query: 1 MKVKVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPT 60
MK+KV VNG Y+VDV+ K++E P+ T + P
Sbjct: 1 MKLKVTVNGTAYDVDVDV-----------DKSHE---------NPMGTILFGGGTGGAPA 40
Query: 61 PTPVQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPR 120
P A +A E + AP+ G V KILV+EG VK GQ +L+LEAMKME EI AP
Sbjct: 41 PAAGGAGAG---KAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPT 97
Query: 121 DGVVKRILVKEGDAVDTGTPLIELG 145
DG V+++LVKE DAV G LI++G
Sbjct: 98 DGKVEKVLVKERDAVQGGQGLIKIG 122
>sp|P02904|BCCP_PROFR BIOTIN CARBOXYL CARRIER PROTEIN OF METHYLMALONYL-COA
CARBOXYL-TRANSFERASE (TRANSCARBOXYLASE, 1.3S SUBUNIT)
>gi|72415|pir||BKIP biotin carboxyl carrier protein
[validated] - Propionibacterium freudenreichii subsp.
shermanii >gi|150927|gb|AAA25674.1| (M11738)
transcarboxylase, 1.3S subunit [Propionibacterium
freudenreichii subsp. shermanii]
Length = 123
Score = 88.5 bits (216), Expect = 3e-17
Identities = 60/145 (41%), Positives = 78/145 (53%), Gaps = 22/145 (15%)
Query: 1 MKVKVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPT 60
MK+KV VNG Y+VDV+ K++E P+ T + P
Sbjct: 1 MKLKVTVNGTAYDVDVDV-----------DKSHE---------NPMGTILFGGGTGGAPA 40
Query: 61 PTPVQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPR 120
P A +A E + AP+ G V KILV+EG VK GQ +L+LEAMKME EI AP
Sbjct: 41 PRA--AGGAGAGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPT 98
Query: 121 DGVVKRILVKEGDAVDTGTPLIELG 145
DG V+++LVKE DAV G LI++G
Sbjct: 99 DGKVEKVLVKERDAVQGGQGLIKIG 123
>gb|AAF14626.1|AF200362_2 (AF200362) oxaloacetate decarboxylase alpha chain [Haemophilus
ducreyi]
Length = 601
Score = 85.4 bits (208), Expect = 3e-16
Identities = 58/143 (40%), Positives = 75/143 (51%), Gaps = 17/143 (11%)
Query: 2 KVKVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTP 61
K VV N K +E V + V +EGK + V+ + G + + TPT
Sbjct: 475 KSSVVHNTKTHETAV-------YTVEVEGKAFVVKVSEGGDITQI---------TPTTQA 518
Query: 62 TPVQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRD 121
A P Q+SE V TAPM G +LK+ V EGQQV G+ LLILEAMKME +I A
Sbjct: 519 NHTTATEPPSAQSSEPV-TAPMAGNILKVAVTEGQQVAEGEVLLILEAMKMETQICAAHA 577
Query: 122 GVVKRILVKEGDAVDTGTPLIEL 144
G+V+ I VK+GD V L+ L
Sbjct: 578 GIVQTITVKQGDVVAVDQVLMNL 600
>sp|P29337|BCCP_STRMU BIOTIN CARBOXYL CARRIER PROTEIN (BCCP) >gi|153584|gb|AAA03702.1|
(M80523) biotin carboxyl carrier protein [Streptococcus
mutans]
Length = 130
Score = 83.1 bits (202), Expect = 1e-15
Identities = 52/130 (40%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 23 KFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTPTPV--------QAPTTPQVQA 74
KF+++++GK Y VE +++ ATP TPT T Q P+ +
Sbjct: 4 KFKISIDGKEYLVEME---EISESSVPAATPI-TPTTENTRAASDQKQQSQTPSPAATAS 59
Query: 75 SENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDA 134
+ N + APMPG +LK+LV G V Q L+ILEAMKMENEI A G V I V G
Sbjct: 60 AANTMPAPMPGTILKVLVNVGDTVSENQPLMILEAMKMENEIVAGMAGTVSAIHVSSGQT 119
Query: 135 VDTGTPLIEL 144
VD G LI +
Sbjct: 120 VDAGDNLITI 129
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s) >gi|7546399|pdb|1DD2|A Chain A, Biotin Carboxyl
Carrier Domain Of Transcarboxylase (Tc 1.3s)
Length = 77
Score = 82.3 bits (200), Expect = 2e-15
Identities = 42/73 (57%), Positives = 53/73 (72%)
Query: 73 QASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEG 132
+A E + AP+ G V KILV+EG VK GQ +L+LEAMKME EI AP DG V+++LVKE
Sbjct: 5 KAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKER 64
Query: 133 DAVDTGTPLIELG 145
DAV G LI++G
Sbjct: 65 DAVQGGQGLIKIG 77
>pir||B70432 pyruvate carboxylase c-terminal domain - Aquifex aeolicus
>gi|2983894|gb|AAC07445.1| (AE000744) pyruvate
carboxylase c-terminal domain [Aquifex aeolicus]
Length = 655
Score = 81.1 bits (197), Expect = 5e-15
Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 10/143 (6%)
Query: 2 KVKVVVNGKEYEVDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTP 61
K KV + G VD E P K+ V + + E IQ+ P + + T
Sbjct: 513 KFKVRIEG--VSVDAESGKPRKYYVRINNRLEE------IQLKPFKEAIPQGGGAQTVQS 564
Query: 62 TPVQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRD 121
+ + + VT PMPGKV+KILV+EG+ V+ GQ + +EAMKMENE+ AP D
Sbjct: 565 AEEEEGIPKATEPGD--VTPPMPGKVVKILVKEGEPVQQGQTVATVEAMKMENEVHAPID 622
Query: 122 GVVKRILVKEGDAVDTGTPLIEL 144
G+VK+I K GD V+ ++ +
Sbjct: 623 GIVKKIFAKPGDQVNPDQAIMRI 645
>sp|Q03030|DCOA_SALTY OXALOACETATE DECARBOXYLASE ALPHA CHAIN >gi|419582|pir||B44465
sodium ion pump oxaloacetate decarboxylase subunit alpha
- Salmonella typhimurium >gi|408892|gb|AAA02973.1|
(M96434) oxaloacetate decarboxylase [Salmonella
typhimurium]
Length = 591
Score = 79.6 bits (193), Expect = 1e-14
Identities = 48/123 (39%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Query: 22 GKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTPTPVQAPTTPQVQASENVVTA 81
G + V +EGK + V+ + G ++ + V + P P A T VTA
Sbjct: 477 GIYTVEVEGKAFVVKVSDGGDISQLTAAVPAASSAPVQAAAPAGAGTP---------VTA 527
Query: 82 PMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAVDTGTPL 141
P+ G + K++ EGQ V G LLILEAMKME EI A + G V+ I VK GDAV G L
Sbjct: 528 PLAGNIWKVIATEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKSGDAVSVGDTL 587
Query: 142 IEL 144
+ L
Sbjct: 588 MTL 590
>pir||D81367 probable pyruvate carboxylase (EC 6.4.1.1) B chain Cj0933c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968370|emb|CAB73190.1| (AL139076) putative pyruvate
carboxylase B subunit [Campylobacter jejuni]
Length = 599
Score = 75.7 bits (183), Expect = 2e-13
Identities = 44/119 (36%), Positives = 63/119 (51%), Gaps = 5/119 (4%)
Query: 23 KFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTPTPVQAPTTPQVQASENVVTAP 82
KF V + G Y VE + G + + + +T V A EN V A
Sbjct: 481 KFTVAVNGNKYHVEVSYGFD----KDVNVKSVKKVEENKNIISSNSTSSVDA-ENEVLAG 535
Query: 83 MPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAVDTGTPL 141
+ G V KI V EG++VK GQ +++LEAMKME E+ AP+DG++ + +K GD V+ G L
Sbjct: 536 ISGNVFKIYVNEGEEVKSGQAIMVLEAMKMEIEVNAPKDGIILELCIKIGDTVNEGEVL 594
>pir||T44608 pyruvate carboxylase (EC 6.4.1.1) [imported] - Bacillus cereus
(fragment) >gi|4584148|emb|CAB40604.1| (AJ010111)
pyruvate carboxylase [Bacillus cereus]
Length = 984
Score = 75.3 bits (182), Expect = 3e-13
Identities = 35/68 (51%), Positives = 49/68 (71%)
Query: 77 NVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAVD 136
N ++A MPG V+K++V+EG +VK G + I EAMKME + AP +G VK++ V +GDA+
Sbjct: 915 NHISATMPGTVIKVVVKEGDEVKKGDSMAITEAMKMETTVQAPFNGKVKKVYVNDGDAIQ 974
Query: 137 TGTPLIEL 144
TG LIEL
Sbjct: 975 TGDLLIEL 982
>pir||A83395 probable acyl-CoA carboxylase alpha chain PA2012 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948015|gb|AAG05400.1|AE004627_8 (AE004627) probable
acyl-CoA carboxylase alpha chain [Pseudomonas
aeruginosa]
Length = 655
Score = 74.9 bits (181), Expect = 4e-13
Identities = 35/71 (49%), Positives = 51/71 (71%)
Query: 74 ASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGD 133
A + ++APM G ++++LV+ GQ V+ G L++LEAMKME+ I AP GVVK + EG+
Sbjct: 580 AHQGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGE 639
Query: 134 AVDTGTPLIEL 144
V+ GTPL+EL
Sbjct: 640 LVEEGTPLVEL 650
>pir||G82308 oxaloacetate decarboxylase, alpha chain VC0550 [similarity] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654979|gb|AAF93718.1| (AE004141) oxaloacetate
decarboxylase, alpha subunit [Vibrio cholerae]
Length = 597
Score = 74.5 bits (180), Expect = 5e-13
Identities = 47/121 (38%), Positives = 65/121 (52%), Gaps = 10/121 (8%)
Query: 24 FRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTPTPVQAPTTPQVQASENVVTAPM 83
+ V ++G Y+VE Q+ V PA V PT Q +E V AP+
Sbjct: 486 YSVKVDGVVYDVEVGSQGQLTSV-----VPAGQKAAPKLAVATPT----QGAE-AVAAPL 535
Query: 84 PGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAVDTGTPLIE 143
G + KI V++G +V G L++LEAMKME EI A R GV++ + VKEGD+V G L+
Sbjct: 536 AGTIFKIQVEQGDEVAEGDVLIVLEAMKMETEIRAARSGVIQELHVKEGDSVRVGASLLS 595
Query: 144 L 144
L
Sbjct: 596 L 596
>gb|AAA85920.1| (U00012) bccA; B1308_C1_129 [Mycobacterium leprae]
Length = 598
Score = 73.4 bits (177), Expect = 1e-12
Identities = 45/131 (34%), Positives = 67/131 (50%), Gaps = 1/131 (0%)
Query: 14 VDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTPTPVQAPTTPQVQ 73
+D E+ P + V +E +E +L +A PA P P +
Sbjct: 468 LDEEDTRPQQ-TVIVEVDGRRLEVSLPADLALANPAGCNPAGVIRKKPKPRKRGGHTGAA 526
Query: 74 ASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGD 133
S + VTAPM G V+K+ V EGQ V G +++LEAMKMEN + A +DG++ + V+ G
Sbjct: 527 TSGDAVTAPMQGTVVKVAVAEGQTVMTGDLVVVLEAMKMENPVTAHKDGIITGLAVEAGT 586
Query: 134 AVDTGTPLIEL 144
A+ GT L E+
Sbjct: 587 AITQGTVLAEI 597
>sp|P46392|BCCA_MYCLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN [INCLUDES:
BIOTIN CARBOXYLASE ; BIOTIN CARBOXYL CARRIER PROTEIN
(BCCP)] >gi|1076022|pir||A55579 biotin carboxyl carrier
protein - Mycobacterium leprae
>gi|581342|emb|CAA45070.1| (X63470) biotin carboxyl
carrier protein [Mycobacterium leprae]
Length = 598
Score = 73.4 bits (177), Expect = 1e-12
Identities = 45/131 (34%), Positives = 67/131 (50%), Gaps = 1/131 (0%)
Query: 14 VDVEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTPTPVQAPTTPQVQ 73
+D E+ P + V +E +E +L +A PA P P +
Sbjct: 468 LDEEDTRPQQ-TVIVEVDGRRLEVSLPADLALANPAGCNPAGVIRKKPKPRKRGGHTGAA 526
Query: 74 ASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGD 133
S + VTAPM G V+K+ V EGQ V G +++LEAMKMEN + A +DG++ + V+ G
Sbjct: 527 TSGDAVTAPMQGTVVKVAVAEGQTVMTGDLVVVLEAMKMENPVTAHKDGIITGLAVEAGT 586
Query: 134 AVDTGTPLIEL 144
A+ GT L E+
Sbjct: 587 AITQGTVLAEI 597
>sp|P43874|BCCP_HAEIN BIOTIN CARBOXYL CARRIER PROTEIN OF ACETYL-COA CARBOXYLASE (BCCP)
>gi|1073905|pir||E64105 acetyl-CoA carboxylase (EC
6.4.1.2), biotin carboxyl carrier protein - Haemophilus
influenzae (strain Rd KW20) >gi|1573998|gb|AAC22631.1|
(U32778) acetyl-CoA carboxylase, biotin carboxyl carrier
protein (accB) [Haemophilus influenzae Rd]
Length = 155
Score = 73.4 bits (177), Expect = 1e-12
Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 43 VAPVQTQ-VATPAPTPTPTPTPVQAP----TTPQV--QASENVVTAPM-------PGKVL 88
+AP Q A P PTP P Q P T P + S ++V +PM P
Sbjct: 39 IAPAAVQYAAAPVVAPTPAAAPAQVPAAATTAPAASDELSGHLVRSPMVGTFYRSPSPEA 98
Query: 89 KILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAVDTGTPLI 142
K V+ GQ VK+G L I+EAMKM N I A + GVVK IL+ +G+AV+ PLI
Sbjct: 99 KAFVEVGQSVKVGDALCIVEAMKMMNRIEADKAGVVKAILINDGNAVEFDEPLI 152
>pir||F70439 oxaloacetate decarboxylase alpha chain - Aquifex aeolicus
>gi|2983949|gb|AAC07497.1| (AE000747) oxaloacetate
decarboxylase alpha chain [Aquifex aeolicus]
Length = 620
Score = 73.4 bits (177), Expect = 1e-12
Identities = 52/145 (35%), Positives = 78/145 (52%), Gaps = 12/145 (8%)
Query: 5 VVVNGKEYEVDV-----EEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTP 59
V V+G++Y V + E+ F + L+G+ EV+ I+ V+ AT A T
Sbjct: 475 VTVHGEQYHVQIAGKGEEDPTRRTFFIRLDGQLQEVQLQ-PIREVSVKEAFATEA---TE 530
Query: 60 TPTPVQAPTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAP 119
T + P+ VT+P+ GKV+ I V G +VK G LL++EAMKMENEI +P
Sbjct: 531 GGTVISKRPKPKGIGD---VTSPITGKVVNIKVNVGDEVKEGDVLLVVEAMKMENEIHSP 587
Query: 120 RDGVVKRILVKEGDAVDTGTPLIEL 144
DG+V+ I V+ G+ V+ LI +
Sbjct: 588 VDGIVEEIFVRVGETVNPDEVLIRI 612
>dbj|BAA12072.1| (D83706) pyruvate carboxylase [Bacillus stearothermophilus]
Length = 1147
Score = 71.8 bits (173), Expect = 3e-12
Identities = 35/72 (48%), Positives = 49/72 (67%)
Query: 73 QASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEG 132
+ + N + A MPG V+K+LV++G++V G L++ EAMKME + AP GVVK I VK G
Sbjct: 1074 RTNPNHIAATMPGTVVKVLVEKGEKVDKGDHLMVTEAMKMETTVQAPFAGVVKDIYVKSG 1133
Query: 133 DAVDTGTPLIEL 144
DA+ G L+EL
Sbjct: 1134 DAIQAGDLLMEL 1145
>pir||F70980 probable accA3 protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1877340|emb|CAB07068.1| (Z92771) accA3
[Mycobacterium tuberculosis]
Length = 600
Score = 71.4 bits (172), Expect = 4e-12
Identities = 43/120 (35%), Positives = 62/120 (50%)
Query: 25 RVTLEGKTYEVEANLGIQVAPVQTQVATPAPTPTPTPTPVQAPTTPQVQASENVVTAPMP 84
+V +E VE +L +A P P P + AS + VTAPM
Sbjct: 480 KVVVEIDGRRVEVSLPADLALSNGGGCDPVGVIRRKPKPRKRGAHTGAAASGDAVTAPMQ 539
Query: 85 GKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAVDTGTPLIEL 144
G V+K V+EGQ+V G +++LEAMKMEN + A +DG + + V+ G A+ GT L E+
Sbjct: 540 GTVVKFAVEEGQEVVAGDLVVVLEAMKMENPVTAHKDGTITGLAVEAGAAITQGTVLAEI 599
>gb|AAF98277.1|AF197933_7 (AF197933) biotin carboxyl carrier protein [Streptococcus
pneumoniae]
Length = 161
Score = 71.4 bits (172), Expect = 4e-12
Identities = 48/116 (41%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 42 QVAPVQTQVATPAPT-PTPTPTP-----VQAPTTPQVQASENVVTAPMPGKVL------- 88
QVAP +ATP+P PT P V AP V N+V +P+ G V
Sbjct: 46 QVAPAPV-LATPSPVAPTSAPAETVAEEVPAPAEASVATEGNLVESPLVGVVYLAAGPDK 104
Query: 89 KILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAVDTGTPLIEL 144
V G VK GQ L+I+EAMK+ NEIPAP+DGVV ILV + V+ G L+ +
Sbjct: 105 PAFVTVGDSVKKGQTLVIIEAMKVMNEIPAPKDGVVTEILVSNEEMVEFGKGLVRI 160
>dbj|BAB06344.1| (AP001516) pyruvate carboxylase [Bacillus halodurans]
Length = 1150
Score = 71.4 bits (172), Expect = 4e-12
Identities = 36/72 (50%), Positives = 50/72 (69%)
Query: 73 QASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEG 132
+++ N + A MPG V+K LV++G +VK G L+I EAMKME + AP DG V + VK+G
Sbjct: 1076 KSNPNHIGASMPGTVVKALVEKGDKVKQGDHLMITEAMKMETTVQAPFDGEVVALHVKDG 1135
Query: 133 DAVDTGTPLIEL 144
DA+ TG LIE+
Sbjct: 1136 DAIQTGDLLIEV 1147
>pir||E81033 acetyl-CoA carboxylase, biotin carboxyl carrier protein NMB1860
[imported] - Neisseria meningitidis (group B strain
MD58, group A strain Z2491) >gi|7227117|gb|AAF42194.1|
(AE002536) acetyl-CoA carboxylase, biotin carboxyl
carrier protein [Neisseria meningitidis MC58]
>gi|7379332|emb|CAB83887.1| (AL162753) putative
acetyl-CoA carboxylase biotin carboxyl carrier protein
[Neisseria meningitidis Z2491]
Length = 151
Score = 70.6 bits (170), Expect = 7e-12
Identities = 54/141 (38%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 16 VEEVMPGKFRVTLEGKTYEVEANLGIQVAPVQTQ---VATPAPTPTPTPTPVQAPTT-PQ 71
VEE + VT EG+ +V I APV A PA TP P AP P
Sbjct: 13 VEESGIAEIEVT-EGEE-KVRITRTIAAAPVYAAPVPAAAPAVTPAAAPVAASAPAAAPA 70
Query: 72 VQASENVVTAPM-------PGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVV 124
+ + +PM PG V+ GQQVK G L I+EAMK+ NEI A + G V
Sbjct: 71 ARDLSDAQKSPMVGTFYRAPGPNAAPFVEVGQQVKAGDTLCIIEAMKLMNEIEAEKSGTV 130
Query: 125 KRILVKEGDAVDTGTPLIELG 145
K ILV+ G V+ G PL +G
Sbjct: 131 KEILVENGTPVEFGEPLFIIG 151
>sp|Q58628|PYCB_METJA PYRUVATE CARBOXYLASE SUBUNIT B (PYRUVIC CARBOXYLASE B)
>gi|2129173|pir||F64453 oxaloacetate decarboxylase (EC
4.1.1.3) alpha chain MJ1231 [similarity] - Methanococcus
jannaschii >gi|1591862|gb|AAB99233.1| (U67563)
oxaloacetate decarboxylase alpha chain (oadA)
[Methanococcus jannaschii]
Length = 567
Score = 70.2 bits (169), Expect = 1e-11
Identities = 34/63 (53%), Positives = 46/63 (72%)
Query: 76 ENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAV 135
E VT+P G V KI V+EG +VK G +++LEAMKME+ I +P +G V+RIL+ EGDAV
Sbjct: 498 EGAVTSPFRGMVTKIKVKEGDKVKKGDVIVVLEAMKMEHPIESPVEGTVERILIDEGDAV 557
Query: 136 DTG 138
+ G
Sbjct: 558 NVG 560
>gb|AAF61288.1|AF064528_1 (AF064528) 3-methylcrotonyl-CoA carboxylase [Rhodospirillum
centenum (Rhodocista centenaria)]
Length = 456
Score = 68.7 bits (165), Expect = 3e-11
Identities = 34/65 (52%), Positives = 45/65 (68%)
Query: 79 VTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAVDTG 138
+TAPMPGKV+ +L +EG V GQ L++LEAMKME+ + AP G V+R + GD V G
Sbjct: 387 LTAPMPGKVIALLAEEGAAVAAGQPLVVLEAMKMEHTLKAPVAGTVRRHRFRVGDQVPEG 446
Query: 139 TPLIE 143
T L+E
Sbjct: 447 TELME 451
>pir||F82966 probable transcarboxylase subunit PA5435 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951764|gb|AAG08820.1|AE004956_4 (AE004956) probable
transcarboxylase subunit [Pseudomonas aeruginosa]
Length = 607
Score = 68.7 bits (165), Expect = 3e-11
Identities = 50/146 (34%), Positives = 73/146 (49%), Gaps = 7/146 (4%)
Query: 6 VVNGKEYEVDVEEVMPGKFRVTLEGKTYEVE-ANLGIQVAPVQTQVATPAPTPT-----P 59
+ GK E P +F + + G+TY V+ +G++ + + P P
Sbjct: 460 IPTGKGVAAAGAEGTPTEFVIDVHGETYRVDITGVGVKSDNKRHFYLSIDGMPEEVVFEP 519
Query: 60 TPTPVQAPTTPQVQASE-NVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPA 118
V + + ASE V+ MPG ++ +LV+EG VK GQ +LI EAMKME E+ A
Sbjct: 520 LNEYVAGSASGRKHASEPGHVSTTMPGNIVDVLVKEGDSVKAGQAVLITEAMKMETEVQA 579
Query: 119 PRDGVVKRILVKEGDAVDTGTPLIEL 144
G VK I V +GD V+ G LIE+
Sbjct: 580 GIAGTVKAIHVAKGDRVNPGEILIEI 605
>pir||F83284 probable biotin carboxylase/biotin carboxyl carrier protein PA2891
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9948982|gb|AAG06279.1|AE004715_5 (AE004715) probable
biotin carboxylase/biotin carboxyl carrier protein
[Pseudomonas aeruginosa]
Length = 661
Score = 67.9 bits (163), Expect = 5e-11
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 66 APTTPQVQASENVVTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVK 125
A + QV AS + APM G ++++LV EG++V GQ LL+LEAMKME+ + A DGVV+
Sbjct: 579 AGASAQVGASSGTLKAPMDGAIVEVLVGEGERVGKGQLLLVLEAMKMEHPLKAGVDGVVR 638
Query: 126 RILVKEGDAVDTGTPLIEL 144
R+ V G+ V L+E+
Sbjct: 639 RVQVGRGEQVRNRQVLVEV 657
>emb|CAA67994.1| (X99678) oxaloacetate decarboxylase alpha-chain [Legionella
pneumophila]
Length = 596
Score = 67.1 bits (161), Expect = 8e-11
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 79 VTAPMPGKVLKILVQEGQQVKLGQGLLILEAMKMENEIPAPRDGVVKRILVKEGDAVDTG 138
+T +PG ++ I V G +VK GQ +L++EAMKME EI AP +GVV IL ++GD V G
Sbjct: 528 ITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPG 587
Query: 139 TPLIEL 144
LI +
Sbjct: 588 QVLIRV 593
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.311 0.133 0.364
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58367294
Number of Sequences: 2977
Number of extensions: 2712438
Number of successful extensions: 39112
Number of sequences better than 1.0e-10: 35
Number of HSP's better than 0.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 38994
Number of HSP's gapped (non-prelim): 58
length of query: 145
length of database: 189,106,746
effective HSP length: 58
effective length of query: 87
effective length of database: 154,394,500
effective search space: 13432321500
effective search space used: 13432321500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 161 (67.1 bits)