BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1772 (mmdB) DE:Methylmalonyl-CoA decarboxylase, beta subunit
(400 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75135 methylmalonyl-coa decarboxylase, beta chain PAB1772 ... 774 0.0
pir||H71073 probable methylmalonyl-CoA decarboxylase beta chain ... 753 0.0
gi|11499666 oxaloacetate decarboxylase, sodium ion pump subunit ... 476 e-133
gb|AAC69173.1| (AF030576) glutaconyl-CoA decarboxylase beta subu... 438 e-122
gb|AAF14627.1|AF200362_3 (AF200362) oxaloacetate decarboxylase b... 418 e-116
pir||H82308 oxaloacetate decarboxylase, beta chain VC0551 [impor... 417 e-115
pir||T44985 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) beta c... 414 e-115
pir||E49094 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) beta c... 412 e-114
sp|Q03031|DCOB_SALTY OXALOACETATE DECARBOXYLASE BETA CHAIN >gi|3... 407 e-113
pir||D82280 oxaloacetate decarboxylase, beta chain VC0792 [impor... 407 e-112
pir||C71373 probable oxaloacetate decarboxylase, subunit beta (o... 385 e-106
pir||B72324 oxaloacetate decarboxylase, beta subunit - Thermotog... 363 1e-99
sp|P13156|DCOB_KLEPN OXALOACETATE DECARBOXYLASE BETA CHAIN >gi|9... 269 5e-71
gb|AAC45399.1| (U87980) putative carboxybiotin decarboxylase sub... 203 3e-51
pir||A44464 oxaloacetate decarboxylase beta subunit (C terminus)... 166 3e-40
gb|AAA25118.1| (M26290) oadB [Klebsiella pneumoniae] 160 2e-38
>pir||E75135 methylmalonyl-coa decarboxylase, beta chain PAB1772 - Pyrococcus
abyssi (strain Orsay) >gi|5458309|emb|CAB49798.1|
(AJ248285) Methylmalonyl-CoA decarboxylase, beta subunit
[Pyrococcus abyssi]
Length = 400
Score = 774 bits (1978), Expect = 0.0
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 1 MGLEQALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLP 60
MGLEQALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLP
Sbjct: 1 MGLEQALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLP 60
Query: 61 LSHMANWPLAPQLPPEVQGNIFATLSYLNKQYGPPGLFDLIYYLLIKTEIVPLLIFFGLG 120
LSHMANWPLAPQLPPEVQGNIFATLSYLNKQYGPPGLFDLIYYLLIKTEIVPLLIFFGLG
Sbjct: 61 LSHMANWPLAPQLPPEVQGNIFATLSYLNKQYGPPGLFDLIYYLLIKTEIVPLLIFFGLG 120
Query: 121 AMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIYLT 180
AMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIYLT
Sbjct: 121 AMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIYLT 180
Query: 181 TKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIV 240
TKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIV
Sbjct: 181 TKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIV 240
Query: 241 SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRA 300
SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRA
Sbjct: 241 SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRA 300
Query: 301 ESFLTPKTLMILALGIVAFASATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVV 360
ESFLTPKTLMILALGIVAFASATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVV
Sbjct: 301 ESFLTPKTLMILALGIVAFASATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVV 360
Query: 361 QKLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG 400
QKLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG
Sbjct: 361 QKLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG 400
>pir||H71073 probable methylmalonyl-CoA decarboxylase beta chain - Pyrococcus
horikoshii >gi|3257703|dbj|BAA30386.1| (AP000005) 400aa
long hypothetical methylmalonyl-CoA decarboxylase beta
chain [Pyrococcus horikoshii]
Length = 400
Score = 753 bits (1923), Expect = 0.0
Identities = 385/400 (96%), Positives = 396/400 (98%)
Query: 1 MGLEQALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLP 60
MG EQAL+DFFEHMGLLNLT GN+VMI+VGLTLVYLAIRYKMEPLLLLPIGISAVLVNLP
Sbjct: 1 MGFEQALIDFFEHMGLLNLTIGNIVMILVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLP 60
Query: 61 LSHMANWPLAPQLPPEVQGNIFATLSYLNKQYGPPGLFDLIYYLLIKTEIVPLLIFFGLG 120
LSH+A+WPLAPQLPP+VQGNIFATLSYLNKQYGPPGLFDLIYYLLIKTE+VPLLIFFGLG
Sbjct: 61 LSHIADWPLAPQLPPDVQGNIFATLSYLNKQYGPPGLFDLIYYLLIKTEVVPLLIFFGLG 120
Query: 121 AMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIYLT 180
AMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIYLT
Sbjct: 121 AMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIYLT 180
Query: 181 TKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIV 240
TKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIV
Sbjct: 181 TKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIV 240
Query: 241 SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRA 300
SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLG+GSTMRA
Sbjct: 241 SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGVGSTMRA 300
Query: 301 ESFLTPKTLMILALGIVAFASATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVV 360
ESFLT KTLMIL LG+VAFASATAGGVLFGKLMMKISGG+INPMIGAAGVSAVPMSARVV
Sbjct: 301 ESFLTAKTLMILTLGVVAFASATAGGVLFGKLMMKISGGKINPMIGAAGVSAVPMSARVV 360
Query: 361 QKLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG 400
Q+LASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG
Sbjct: 361 QRLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG 400
>gi|11499666 oxaloacetate decarboxylase, sodium ion pump subunit (oadB)
[Archaeoglobus fulgidus] >gi|7483910|pir||C69510
oxaloacetate decarboxylase, sodium ion pump subunit
(oadB) homolog - Archaeoglobus fulgidus
>gi|2648455|gb|AAB89172.1| (AE000960) oxaloacetate
decarboxylase, sodium ion pump subunit (oadB)
[Archaeoglobus fulgidus]
Length = 354
Score = 476 bits (1212), Expect = e-133
Identities = 255/379 (67%), Positives = 294/379 (77%), Gaps = 27/379 (7%)
Query: 22 GNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLPLSHMANWPLAPQLPPEVQGNI 81
G++VMI VGL LVYL I KMEPLLL+PIGI A+LVN+P +A +G+I
Sbjct: 3 GSLVMIGVGLLLVYLGIVKKMEPLLLVPIGIGAILVNIPGGGLAE-----------EGSI 51
Query: 82 FATLSYLNKQYGPPGLFDLIYYLLIKTEIVPLLIFFGLGAMTDFGPMIADPKTALLGAAA 141
F DL LI TEIVPLLIF GLGA+TDF P++A+PKT LLGAAA
Sbjct: 52 F----------------DLFLKYLIHTEIVPLLIFLGLGALTDFSPLLANPKTFLLGAAA 95
Query: 142 QIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIYLTTKLAPHILSATAVAAYSYMSL 201
QIG+F A++ AL LGF +EAASIGIIGGADGPTTIY TT LAPH+L+ATAVAAYSYMSL
Sbjct: 96 QIGIFAALIAALFLGFTPQEAASIGIIGGADGPTTIYTTTILAPHLLAATAVAAYSYMSL 155
Query: 202 VPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIVSMIVIGLLVPSAAPLIGMLMI 261
VP+IQPP+IKALT+ ERKI+M QLR VSK+EKILFPI ++I+ G L P A PL+GMLM
Sbjct: 156 VPIIQPPIIKALTSSRERKIKMRQLRIVSKKEKILFPIATIIISGFLAPKALPLVGMLMT 215
Query: 262 GNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRAESFLTPKTLMILALGIVAFAS 321
GNLFRESGV RL+K A EELMNI+TI LGL +GSTMRAESFLT KTL++LALG+VAFA+
Sbjct: 216 GNLFRESGVTDRLAKGASEELMNIMTIILGLSVGSTMRAESFLTQKTLLVLALGVVAFAA 275
Query: 322 ATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVVQKLASEEDPGNFILMHAMGPN 381
ATAGGVL K+M +INPMIGAAGVSAVPMSARVVQ+LA EEDP N ILMHAMGPN
Sbjct: 276 ATAGGVLLAKVMNLFLKEKINPMIGAAGVSAVPMSARVVQRLAIEEDPHNHILMHAMGPN 335
Query: 382 VAGVIGTAVVAGVFLSALG 400
VAGVIG+AV AGV + LG
Sbjct: 336 VAGVIGSAVAAGVLIQILG 354
>gb|AAC69173.1| (AF030576) glutaconyl-CoA decarboxylase beta subunit
[Acidaminococcus fermentans]
Length = 375
Score = 438 bits (1115), Expect = e-122
Identities = 234/395 (59%), Positives = 280/395 (70%), Gaps = 28/395 (7%)
Query: 6 ALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLPLSHMA 65
AL + G + TWGN VM++VG L+YLAI EPLLL PI +L N+P +
Sbjct: 7 ALTSVIQDSGFVAFTWGNAVMMLVGCILLYLAIVKGFEPLLLSPIAFGCILANVPRTGFE 66
Query: 66 NWPLAPQLPPEVQGNIFATLSYLNKQYGPPGLFDLIYYLLIKTEIVPLLIFFGLGAMTDF 125
PG+ LI IK EI P LIF G+GAMTDF
Sbjct: 67 T---------------------------DPGVMQLILG-GIKYEIFPPLIFMGVGAMTDF 98
Query: 126 GPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIYLTTKLAP 185
GP+IA+PKT LLGAAAQIGVFVA+L A+ LGFN+KEA++IGIIGGADGPT+IYL +K+AP
Sbjct: 99 GPLIANPKTLLLGAAAQIGVFVALLGAMLLGFNVKEASAIGIIGGADGPTSIYLASKMAP 158
Query: 186 HILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIVSMIVI 245
H+L A AVAAYSYMSLVPLIQPPV+K T+ EERKI+M QLR V+ EK++FPIV+ I I
Sbjct: 159 HLLGAIAVAAYSYMSLVPLIQPPVMKLFTSKEERKIKMAQLRTVTHFEKVVFPIVTTIFI 218
Query: 246 GLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRAESFLT 305
LL+PS LIGMLM+GNLF ESG + RLS AQ LMN VTI L G G TM+AESFLT
Sbjct: 219 SLLLPSVCSLIGMLMLGNLFTESGCMDRLSDTAQNALMNSVTIMLATGTGLTMKAESFLT 278
Query: 306 PKTLMILALGIVAFASATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVVQKLAS 365
+T+ I+ LG+VAF TAGGVLFGKLM K+ GG+ NP+IG+AGVSAVPM+ARV Q +
Sbjct: 279 LQTIEIICLGLVAFIGGTAGGVLFGKLMSKLDGGKTNPLIGSAGVSAVPMAARVSQVVGQ 338
Query: 366 EEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG 400
+ DPGNF+LMHAMGPNVAGVIGTAV AG L+ +G
Sbjct: 339 QADPGNFLLMHAMGPNVAGVIGTAVAAGTMLAMVG 373
>gb|AAF14627.1|AF200362_3 (AF200362) oxaloacetate decarboxylase beta chain [Haemophilus
ducreyi]
Length = 435
Score = 418 bits (1063), Expect = e-116
Identities = 226/430 (52%), Positives = 292/430 (67%), Gaps = 41/430 (9%)
Query: 5 QALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLP---- 60
++++ F+ MG++++T G V+MIIV L L++LAI + EPLLLLPIG +L N+P
Sbjct: 2 ESIIALFQGMGIMHITLGQVIMIIVSLILLWLAIARRFEPLLLLPIGFGGLLSNIPEAGL 61
Query: 61 ----LSHMANWPLAPQL------------------------PPEVQGNIFATLSYLNKQY 92
L H+ ++ QL PP VQ + S L
Sbjct: 62 AMTALDHLLHYAHTEQLTIIAEKVNSSSLDVHTIKQAIAFAPPSVQNELEVIASDLGYN- 120
Query: 93 GPPGLFDLIYYLLIKTEIVPLLIFFGLGAMTDFGPMIADPKTALLGAAAQIGVFVAMLVA 152
G+ L Y + I + PL+IF G+GAMTDFGP++A+P+T LLGAAAQ G+F +L A
Sbjct: 121 --AGILALFYKVAIGYGVAPLIIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFTTVLGA 178
Query: 153 LALG------FNLKEAASIGIIGGADGPTTIYLTTKLAPHILSATAVAAYSYMSLVPLIQ 206
L L F+L +AA+IGIIGGADGPT IYL +KLAP +L A AVAAYSYM+LVPLIQ
Sbjct: 179 LGLNWLGIIDFSLPQAAAIGIIGGADGPTAIYLASKLAPELLGAIAVAAYSYMALVPLIQ 238
Query: 207 PPVIKALTTPEERKIRMEQLRPVSKREKILFPIVSMIVIGLLVPSAAPLIGMLMIGNLFR 266
PP++KALTT +ERKIRM QLR VS REKI+FPIV ++++ LL+P AAPL+GM GNL R
Sbjct: 239 PPIMKALTTEQERKIRMVQLRTVSAREKIVFPIVLLLLVALLLPDAAPLLGMFCFGNLMR 298
Query: 267 ESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRAESFLTPKTLMILALGIVAFASATAGG 326
SGVV+RL++ AQ L+NIVTIFLGL +G+ + A+ FL P+TL IL LGIVAFA TA G
Sbjct: 299 ASGVVERLNETAQNALINIVTIFLGLSVGAKLVADKFLQPQTLGILLLGIVAFAIGTASG 358
Query: 327 VLFGKLMMKISGGRINPMIGAAGVSAVPMSARVVQKLASEEDPGNFILMHAMGPNVAGVI 386
V+ K+M S +INP+IG+AGVSAVPM+ARV K+ E D NF+LMHAMGPNVAGVI
Sbjct: 359 VIMAKIMNAFSKHKINPLIGSAGVSAVPMAARVSNKIGLEADKQNFLLMHAMGPNVAGVI 418
Query: 387 GTAVVAGVFL 396
+A+ AG+ L
Sbjct: 419 SSAIAAGIML 428
>pir||H82308 oxaloacetate decarboxylase, beta chain VC0551 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9654980|gb|AAF93719.1| (AE004141) oxaloacetate
decarboxylase, beta subunit [Vibrio cholerae]
Length = 376
Score = 417 bits (1060), Expect = e-115
Identities = 217/400 (54%), Positives = 284/400 (70%), Gaps = 33/400 (8%)
Query: 7 LVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLPLSHMAN 66
L+ ++ G+ N G ++MI+VG TL++LAIR EPLLLLPIG AVL N+P +
Sbjct: 4 LITLWQETGIANFELGQIIMILVGCTLLFLAIRKGFEPLLLLPIGFGAVLANIPNAGFTE 63
Query: 67 WPLAPQLPPEVQGNIFATLSYLNKQYGPPGLFDLIYYLLIKTEIVPLLIFFGLGAMTDFG 126
P GL +Y++ I++ + PLLIF G+GAMTDFG
Sbjct: 64 ---------------------------PGGLLYYVYHIGIESGVFPLLIFMGVGAMTDFG 96
Query: 127 PMIADPKTALLGAAAQIGVFVAMLVALALG------FNLKEAASIGIIGGADGPTTIYLT 180
+IA+PKT LGAAAQ+G+F + A+ L F++ +A+SI IIGGADGPT I+L
Sbjct: 97 ALIANPKTLWLGAAAQLGIFATLFGAILLNFVPGMEFSMADASSIAIIGGADGPTAIFLA 156
Query: 181 TKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIV 240
++L+P +L A AVAAYSYM+LVP+IQPP++KALTTPEERKI+M QLR V K EKI+FP+V
Sbjct: 157 SQLSPDLLGAIAVAAYSYMALVPIIQPPIMKALTTPEERKIKMAQLRHVGKTEKIVFPLV 216
Query: 241 SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRA 300
+++ L +P+A PL+GM +GNL RE+GVV RLSK AQ EL+NIVTIFLGLG+GS ++A
Sbjct: 217 VLLMTILFLPAATPLVGMFCLGNLMREAGVVDRLSKTAQNELINIVTIFLGLGVGSKLQA 276
Query: 301 ESFLTPKTLMILALGIVAFASATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVV 360
E+FL +TL ILALG AF+ TAGGV+ K++ K S INP+IGAAGVSAVPM+ARVV
Sbjct: 277 ETFLNLETLGILALGAAAFSIGTAGGVIMAKILNKFSKEDINPLIGAAGVSAVPMAARVV 336
Query: 361 QKLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG 400
K+ E +P NF+LMHAMGPNVAGV+G+AV AGV L+ +G
Sbjct: 337 NKVGLEANPQNFLLMHAMGPNVAGVLGSAVAAGVLLALVG 376
>pir||T44985 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) beta chain
[validated] - Propionigenium modestum
>gi|2706401|emb|CAA05140.1| (AJ002015) methylmalonyl-CoA
decarboxylase, beta-subunit [Propionigenium modestum]
Length = 395
Score = 414 bits (1054), Expect = e-115
Identities = 224/400 (56%), Positives = 285/400 (71%), Gaps = 11/400 (2%)
Query: 5 QALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLPLSHM 64
QA++DF+ G L G+++M++V +YLAI + EPLLL+PI +L NLP + M
Sbjct: 3 QAILDFYHSTGFYGLNMGSIIMMLVACVFLYLAIAKEFEPLLLVPISFGILLTNLPFAGM 62
Query: 65 ANWPLAPQLPPEVQGNIFATLSYLNKQY-GPPGLFDLIYYLLIKTE--IVPLLIFFGLGA 121
PL EV + A+ ++L + PG L+YYL I P LIF G+GA
Sbjct: 63 MAEPLL-----EVHEKLSASGAHLYTAHTAEPG--GLLYYLFQGDHLGIFPPLIFLGVGA 115
Query: 122 MTDFGPMIADPKTALLGAAAQIGVFVAMLVALALG-FNLKEAASIGIIGGADGPTTIYLT 180
MTDFGP+I++PK+ LLGAAAQ G+FV A+A G F +EAASIGIIGGADGPT I+L+
Sbjct: 116 MTDFGPLISNPKSLLLGAAAQFGIFVTFFGAIASGLFTAQEAASIGIIGGADGPTAIFLS 175
Query: 181 TKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIV 240
+KLAPH++ AVAAYSYM+LVP+IQPP++ ALT+ ERKI+M QLR VSKREKI+FPIV
Sbjct: 176 SKLAPHLMGPIAVAAYSYMALVPIIQPPIMTALTSETERKIKMSQLRLVSKREKIIFPIV 235
Query: 241 SMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRA 300
I++ L+VP AA L+GMLM+GNLFRE GVV RL A+ L+NI+TIFLG+ +G+T A
Sbjct: 236 VTILVSLIVPPAATLVGMLMLGNLFRECGVVGRLEDTAKNALINIITIFLGVTVGATATA 295
Query: 301 ESFLTPKTLMILALGIVAFASATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVV 360
E+FL +TL IL LGIVAF T GVL K M K+S INP++G+AGVSAVPM+ARV
Sbjct: 296 EAFLKVETLAILGLGIVAFGIGTGSGVLLAKFMNKLSKEPINPLLGSAGVSAVPMAARVS 355
Query: 361 QKLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSALG 400
Q + + DP NF+LMHAMGPNVAGVIG+AV AGV LS G
Sbjct: 356 QVVGQKADPTNFLLMHAMGPNVAGVIGSAVSAGVLLSLFG 395
>pir||E49094 methylmalonyl-CoA decarboxylase (EC 4.1.1.41) beta chain -
Veillonella parvula >gi|415597|gb|AAC36824.1| (L22208)
methylmalonyl-CoA decarboxylase beta-subunit
[Veillonella parvula] >gi|415919|emb|CAA80876.1|
(Z24754) beta-subunit,methylmalonyl-CoA decarboxylase
[Veillonella parvula]
Length = 373
Score = 412 bits (1048), Expect = e-114
Identities = 224/394 (56%), Positives = 272/394 (68%), Gaps = 30/394 (7%)
Query: 6 ALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLPLSHMA 65
A+ G L T GN +MI+VGL L+YLA + EPLLL PI +L N+P +
Sbjct: 7 AIQSVINDSGFLAFTTGNAIMILVGLILLYLAFAREFEPLLLGPIAFGCLLANIPRNGF- 65
Query: 66 NWPLAPQLPPEVQGNIFATLSYLNKQYGPPGLFDLIYYLLIKTEIVPLLIFFGLGAMTDF 125
+ + A +S I EI P LIF G+GAMTDF
Sbjct: 66 ------------EEGVMALIS-----------------AGISQEIFPPLIFLGVGAMTDF 96
Query: 126 GPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIYLTTKLAP 185
GP+IA+PKT LLGAAAQIGVF A+ A+ LGF +EAA+IGIIGGADGPT+IYL TKLAP
Sbjct: 97 GPLIANPKTLLLGAAAQIGVFAALGGAMMLGFTAQEAAAIGIIGGADGPTSIYLATKLAP 156
Query: 186 HILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIVSMIVI 245
H+L A AVAAYSYMSLVPLIQPPV+K TT +ER+I MEQLR V++ EKI+FPIV+ I I
Sbjct: 157 HLLGAIAVAAYSYMSLVPLIQPPVMKLFTTQKEREIVMEQLREVTRFEKIVFPIVATIFI 216
Query: 246 GLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRAESFLT 305
LL+PS L+GMLM+GNLFRESGV RLS +Q L+N VTIFL G G TM AE FL+
Sbjct: 217 SLLLPSITSLLGMLMLGNLFRESGVTDRLSDTSQNALINTVTIFLATGTGLTMSAEHFLS 276
Query: 306 PKTLMILALGIVAFASATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVVQKLAS 365
+T+ I+ LG+ AF TAGGVLFGKLM + GG+ NP+IG+AGVSAVPM+ARV Q + +
Sbjct: 277 LETIKIILLGLFAFICGTAGGVLFGKLMSLVDGGKTNPLIGSAGVSAVPMAARVSQVVGA 336
Query: 366 EEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSAL 399
+ +P NF+LMHAMGPNVAGVIGTAV AG L+ L
Sbjct: 337 KANPANFLLMHAMGPNVAGVIGTAVAAGTMLAML 370
>sp|Q03031|DCOB_SALTY OXALOACETATE DECARBOXYLASE BETA CHAIN >gi|321933|pir||C44465 sodium
ion pump oxaloacetate decarboxylase subunit beta -
Salmonella typhimurium >gi|154198|gb|AAA02974.1|
(M96434) oxaloacetate decarboxylase [Salmonella
typhimurium]
Length = 433
Score = 407 bits (1036), Expect = e-113
Identities = 224/426 (52%), Positives = 286/426 (66%), Gaps = 34/426 (7%)
Query: 5 QALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLPLSHM 64
++L + MGL++L G +M++V L L++LAI K EPLLLLPIG +L N+P + +
Sbjct: 2 ESLNALLQGMGLMHLGAGQAIMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGL 61
Query: 65 ANWPL---------------------APQLPPEVQGNIFATLSYLNKQYG-------PPG 96
A L AP + + A S N+ PG
Sbjct: 62 ALTALESLLAHHDAGQLAVIAAKLHCAPDVHAIKEALALALPSVQNQMENLAVDMGYTPG 121
Query: 97 LFDLIYYLLIKTEIVPLLIFFGLGAMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALG 156
+ L Y + I + + PL+IF G+GAMTDFGP++A+P+T LLGAAAQ G+F +L AL L
Sbjct: 122 VLALFYKVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLN 181
Query: 157 ------FNLKEAASIGIIGGADGPTTIYLTTKLAPHILSATAVAAYSYMSLVPLIQPPVI 210
F L +AA+IGIIGGADGPT IYL+ KLAP +L A AVAAYSYM+LVPLIQPP++
Sbjct: 182 YFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLAPELLGAIAVAAYSYMALVPLIQPPIM 241
Query: 211 KALTTPEERKIRMEQLRPVSKREKILFPIVSMIVIGLLVPSAAPLIGMLMIGNLFRESGV 270
KALT+ ERKIRM QLR VSKREKILFP+V ++++ LL+P AAPL+GM GNL RESGV
Sbjct: 242 KALTSETERKIRMVQLRTVSKREKILFPVVLLMLVALLLPDAAPLLGMFCFGNLMRESGV 301
Query: 271 VQRLSKAAQEELMNIVTIFLGLGIGSTMRAESFLTPKTLMILALGIVAFASATAGGVLFG 330
V+RLS Q L+NIVTIFLGL +G+ + A+ FL P+TL IL LG++AF TA GVL
Sbjct: 302 VERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQPQTLGILLLGVIAFGIGTAAGVLMA 361
Query: 331 KLMMKISGGRINPMIGAAGVSAVPMSARVVQKLASEEDPGNFILMHAMGPNVAGVIGTAV 390
KL+ S +INP+IG+AGVSAVPM+ARV K+ E D NF+LMHAMGPNVAGVIG+A+
Sbjct: 362 KLLNLCSKNKINPLIGSAGVSAVPMAARVSNKVGLESDAQNFLLMHAMGPNVAGVIGSAI 421
Query: 391 VAGVFL 396
AGV L
Sbjct: 422 AAGVML 427
>pir||D82280 oxaloacetate decarboxylase, beta chain VC0792 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655241|gb|AAF93957.1| (AE004164) oxaloacetate
decarboxylase, beta subunit [Vibrio cholerae]
Length = 433
Score = 407 bits (1035), Expect = e-112
Identities = 222/417 (53%), Positives = 287/417 (68%), Gaps = 35/417 (8%)
Query: 15 GLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLPLSHMAN-------- 66
GL +L WG +MI+VGL L+YLAI + EPLLL+PIG +L NLP + +A
Sbjct: 12 GLFHLQWGQGIMILVGLVLLYLAIVKRFEPLLLVPIGFGGILSNLPDAGLAMSAIENAVY 71
Query: 67 -------------WPLAPQLPPEVQGNI-------FATLSYLNKQYG-PPGLFDLIYYLL 105
L+ +P +++ + TL L +QY G+ L Y +
Sbjct: 72 AAKPEVMTAFSEVLQLSSYMPADIKQALSSATPLQMTTLHLLAEQYQYSDGMLYLFYSIA 131
Query: 106 IKTEIVPLLIFFGLGAMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALG------FNL 159
I + PL+IF G+GAMTDFGP++A+PKT LLGAAAQ G+F +L ALAL F++
Sbjct: 132 IASGAGPLIIFMGVGAMTDFGPLLANPKTLLLGAAAQFGIFTTVLGALALSSLGVMDFSV 191
Query: 160 KEAASIGIIGGADGPTTIYLTTKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEER 219
+AA+IGIIGGADGPT IY+++ LAP +L A AVAAYSYM+LVP+IQPP+++ALTT EER
Sbjct: 192 AQAAAIGIIGGADGPTAIYVSSMLAPELLGAIAVAAYSYMALVPMIQPPIMRALTTQEER 251
Query: 220 KIRMEQLRPVSKREKILFPIVSMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQ 279
KI+M+QLR V K EKI FP++ +I+I LL+PSA PL+GM GNL RE GVV+RLS AQ
Sbjct: 252 KIQMQQLRQVHKLEKIGFPLLLLILIALLLPSATPLLGMFCFGNLMRECGVVERLSDTAQ 311
Query: 280 EELMNIVTIFLGLGIGSTMRAESFLTPKTLMILALGIVAFASATAGGVLFGKLMMKISGG 339
L+NIVTIFLGL +GS + A+ FL P+T+ IL LGIVAF TA GVL KLM + S
Sbjct: 312 NALINIVTIFLGLSVGSKLMADKFLQPQTIGILVLGIVAFCVGTAAGVLMAKLMNRFSTT 371
Query: 340 RINPMIGAAGVSAVPMSARVVQKLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFL 396
++NP+IG+AGVSAVPM+ARV K+ E + NF+LMHAMGPNVAGVIG+AV AGV +
Sbjct: 372 KLNPLIGSAGVSAVPMAARVSNKVGLEANAQNFLLMHAMGPNVAGVIGSAVAAGVMI 428
>pir||C71373 probable oxaloacetate decarboxylase, subunit beta (oadB) - syphilis
spirochete >gi|3322314|gb|AAC65052.1| (AE001190)
oxaloacetate decarboxylase, subunit beta (oadB)
[Treponema pallidum]
Length = 469
Score = 385 bits (979), Expect = e-106
Identities = 198/382 (51%), Positives = 264/382 (68%), Gaps = 33/382 (8%)
Query: 25 VMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLPLSHMANWPLAPQLPPEVQGNIFAT 84
++++VGL ++YL EPLLL+PIG V VN+P + M
Sbjct: 114 LLLVVGLLIIYLGAAKGFEPLLLIPIGFGTVFVNIPGAGM-------------------- 153
Query: 85 LSYLNKQYGPPGLFDLIYYLLIKTEIVPLLIFFGLGAMTDFGPMIADPKTALLGAAAQIG 144
Y G+ LIY + E P+LIF G+GA+TDFGP+IA+PK A+LGAAAQ+G
Sbjct: 154 -------YSEHGMLKLIYDAGVGNEFFPMLIFMGIGALTDFGPLIANPKMAVLGAAAQLG 206
Query: 145 VFVAMLVALALGF------NLKEAASIGIIGGADGPTTIYLTTKLAPHILSATAVAAYSY 198
VF+ + AL F ++ +A +I IIGGADGPT+IY++ KLAP +++ AVAAYSY
Sbjct: 207 VFLTLFGVAALNFVPGIRYSILDACAIAIIGGADGPTSIYVSAKLAPELMAVIAVAAYSY 266
Query: 199 MSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFPIVSMIVIGLLVPSAAPLIGM 258
M+LVP+IQPP+++ LTT +ER IRM+QLRPVS+ E++LFP+V +++ LL+P+A+PLIGM
Sbjct: 267 MALVPIIQPPLMRLLTTRKERLIRMKQLRPVSRIERVLFPLVLLLLSVLLIPAASPLIGM 326
Query: 259 LMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRAESFLTPKTLMILALGIVA 318
+ GN +E GVV+RLSK EL+NIV+I L LG+GS M + + P L I+ LG+VA
Sbjct: 327 IAFGNFVKECGVVERLSKTMANELLNIVSILLSLGVGSQMTPDKIMNPNALGIIVLGLVA 386
Query: 319 FASATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVVQKLASEEDPGNFILMHAM 378
F+ ATAGGV KLM +INP+IG+AGVSAVPM+ARV K+ EEDP NF+LMHAM
Sbjct: 387 FSVATAGGVFMAKLMNLFLSEKINPLIGSAGVSAVPMAARVSNKVGLEEDPSNFLLMHAM 446
Query: 379 GPNVAGVIGTAVVAGVFLSALG 400
GPNVAGVIGTA+ AGVF+SA G
Sbjct: 447 GPNVAGVIGTAIAAGVFISAYG 468
>pir||B72324 oxaloacetate decarboxylase, beta subunit - Thermotoga maritima
(strain MSB8) >gi|4981414|gb|AAD35961.1|AE001753_17
(AE001753) oxaloacetate decarboxylase, beta subunit
[Thermotoga maritima]
Length = 384
Score = 363 bits (923), Expect = 1e-99
Identities = 197/401 (49%), Positives = 262/401 (65%), Gaps = 30/401 (7%)
Query: 1 MGLEQALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLP 60
+ + AL +FF +LT+GN+ M V + L+Y+AI EPLLL+PI +L N+P
Sbjct: 11 LSIISALANFFAQTAFPHLTFGNIAMFAVAIALLYVAIVKHSEPLLLIPIAFGIILANIP 70
Query: 61 LSHMANWPLAPQLPPEVQGNIFATLSYLNKQYGPPGLFDLIYYLL--IKTEIVPLLIFFG 118
+ T LN+ +YY+ + I P LIF G
Sbjct: 71 VE---------------------TTGILNEG-------GFLYYIKKGLDLGIYPPLIFLG 102
Query: 119 LGAMTDFGPMIADPKTALLGAAAQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTIY 178
+GA+TDF M++ P T LGAAAQ+G+F VA LGF+LK+AASI IIGGADGPT IY
Sbjct: 103 IGALTDFSFMLSYPITIFLGAAAQMGIFFTFFVAKVLGFSLKQAASIAIIGGADGPTAIY 162
Query: 179 LTTKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRPVSKREKILFP 238
+T L+P +++ A++AYSY++L+P++QP V + L + EERKIRM+ R VS+ E++ FP
Sbjct: 163 ITNTLSPELIAPIAISAYSYIALIPILQPVVSRILVSKEERKIRMKPPRKVSRFERLSFP 222
Query: 239 IVSMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTM 298
IV IV LL+P + PL+G LM GNL RE+G+V+RL +AA +++ VTI L L +G++
Sbjct: 223 IVITIVTALLIPKSLPLVGSLMFGNLLREAGIVKRLVEAASRYILDTVTILLMLSVGASA 282
Query: 299 RAESFLTPKTLMILALGIVAFASATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSAR 358
RA+ FLTP++LMI LG AF + + G+LF KLM +INP+IGAAGVSAVP SAR
Sbjct: 283 RADVFLTPQSLMIFFLGAAAFIVSMSSGILFAKLMNLFLKDKINPLIGAAGVSAVPDSAR 342
Query: 359 VVQKLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSAL 399
V QKLA EEDP N ILMHAMGPNVAGVIG+A VAGVFL L
Sbjct: 343 VAQKLAQEEDPRNHILMHAMGPNVAGVIGSATVAGVFLMFL 383
>sp|P13156|DCOB_KLEPN OXALOACETATE DECARBOXYLASE BETA CHAIN >gi|96599|pir||B36505
oxaloacetate decarboxylase (EC 4.1.1.3) beta chain -
Klebsiella pneumoniae
Length = 327
Score = 269 bits (680), Expect = 5e-71
Identities = 154/316 (48%), Positives = 199/316 (62%), Gaps = 40/316 (12%)
Query: 5 QALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLPLSHM 64
++L + +GL++L G +M++V L L++LAI K EPLLLLPIG +L N+P + +
Sbjct: 2 ESLNALIQGLGLMHLGAGQAIMLLVSLLLLWLAIAKKFEPLLLLPIGFGGLLSNIPEAGL 61
Query: 65 ANWPLAPQLP-------------------------------PEVQGNIFATLSYLNKQYG 93
A L L P VQG + + + G
Sbjct: 62 ALTALESLLAHRDPAQLAVIAAKLHCAPDVHAIKAALALALPSVQGQMESLAVDMGYSAG 121
Query: 94 PPGLFDLIYYLLIKTEIVPLLIFFGLGAMTDFGPMIADPKTALLGAAAQIGVFVAMLVAL 153
+F Y + I + I PL+IF G+GAMTDFGP++A+P+T LLGAAAQ G+F +L AL
Sbjct: 122 VLAIF---YKVAIGSGIAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGAL 178
Query: 154 ALG------FNLKEAASIGIIGGADGPTTIYLTTKLAPHILSATAVAAYSYMSLVPLIQP 207
L F L +AA+IGIIGGADGPT IYL+ KLAP +L A AVAAYSYM+LVPLIQP
Sbjct: 179 TLNYFGIISFTLPQAAAIGIIGGADGPTAIYLSGKLAPELLGAIAVAAYSYMALVPLIQP 238
Query: 208 PVIKALTTPEERKIRMEQLRPVSKREKILFPIVSMIVIGLLVPSAAPLIGMLMIGNLFRE 267
P++KALTT +ERKIRM QLR VSKREKILFP V ++++ LL+P AAPL+GM GNL RE
Sbjct: 239 PIMKALTTDKERKIRMVQLRTVSKREKILFPAVLLLLVALLLPDAAPLLGMFCFGNLMRE 298
Query: 268 SGVVQRLSKAAQEELM 283
SGVV+RLS Q L+
Sbjct: 299 SGVVERLSDTVQNALI 314
>gb|AAC45399.1| (U87980) putative carboxybiotin decarboxylase subunit of malonate
decarboxylase [Malonomonas rubra]
Length = 401
Score = 203 bits (511), Expect = 3e-51
Identities = 126/403 (31%), Positives = 218/403 (53%), Gaps = 14/403 (3%)
Query: 1 MGLEQALVDFFEHMGLLNLTWGNVVMIIVGLTLVYLAIRYKMEPLLLLPIGISAVLVNLP 60
M L A+ F ++++T + +II G L Y + +EPL+++P+G+ + +N
Sbjct: 5 MSLFPAISTLFTQDPVISIT--RIALIIFGFFLSYFGFKRTLEPLIMVPMGLGMIAINAG 62
Query: 61 LSHMANWPLAP-QLPPEV-QGNIFATLSYLNKQYGPPGLFDLIYYLLIKTEIVPLLIFFG 118
+ + + L P V + ++ L +N +Y ++ ++FFG
Sbjct: 63 VLFLEAGVVGTIHLDPLVSEPSVLVNLMQVN-------WLQPVYNFTFSNGLIACIVFFG 115
Query: 119 LGAMTDFGPMIADPKTALLGAA-AQIGVFVAMLVALALGFNLKEAASIGIIGGADGPTTI 177
+GAM+D ++ P +++ A A++G F +++ + +G EAA++ IGGADGP +
Sbjct: 116 IGAMSDISFILIRPWASIIVALFAEMGTFATLIIGIKMGLLPNEAAAVATIGGADGPMVL 175
Query: 178 YLTTKLAPHILSATAVAAYSYMSLVPLIQPPVIKALTTPEERKIRMEQLRP-VSKREKIL 236
+ + LA + A+ AY Y+SL P +IK L + R + +E P VS+R K +
Sbjct: 176 FASLILAKDLFVPIAIIAYLYLSLTYAGYPYLIKLLVPKKYRGLEVEMDFPEVSQRSKFV 235
Query: 237 FPIVSMIVIGLLVPSAAPLIGMLMIGNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGS 296
F +++ +++ LL+P A+PLI +G +E+ + + + L T+FLGL +G+
Sbjct: 236 FSVLACMLLCLLLPVASPLILSFFLGIAIKEAQI-EPFQNLLETTLTYGSTLFLGLLLGA 294
Query: 297 TMRAESFLTPKTLMILALGIVAFASATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMS 356
A++ L PK +I+ LGI A + GGVL G ++ S G+ NP+IG AGVS +P +
Sbjct: 295 LCEAKTILDPKISLIVVLGITALLISGIGGVLGGWIVYWFSKGKFNPVIGIAGVSCLPTT 354
Query: 357 ARVVQKLASEEDPGNFILMHAMGPNVAGVIGTAVVAGVFLSAL 399
A++ QK +EE+P IL AMG V G+I +A+ GVF+S L
Sbjct: 355 AKIAQKTVTEENPYAVILPLAMGAGVCGLIVSAIATGVFISTL 397
>pir||A44464 oxaloacetate decarboxylase beta subunit (C terminus) - Klebsiella
pneumoniae (fragment) >gi|149279|gb|AAA25116.1| (M96436)
oxaloacetate decarboxylase [Klebsiella pneumoniae]
Length = 141
Score = 166 bits (417), Expect = 3e-40
Identities = 85/135 (62%), Positives = 102/135 (74%)
Query: 262 GNLFRESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRAESFLTPKTLMILALGIVAFAS 321
GNL RESGVV+RLS Q L+NIVTIFLGL +G+ + A+ FL P+TL IL LG++AF
Sbjct: 1 GNLMRESGVVERLSDTVQNALINIVTIFLGLSVGAKLVADKFLQPQTLGILVLGVIAFCV 60
Query: 322 ATAGGVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVVQKLASEEDPGNFILMHAMGPN 381
TA GVL KLM S +INP+IG+AGVSAVPM+ARV K+ E D NF+LMHAMGPN
Sbjct: 61 GTAAGVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPN 120
Query: 382 VAGVIGTAVVAGVFL 396
VAGVIG+A+ AGV L
Sbjct: 121 VAGVIGSAIAAGVML 135
>gb|AAA25118.1| (M26290) oadB [Klebsiella pneumoniae]
Length = 138
Score = 160 bits (401), Expect = 2e-38
Identities = 82/131 (62%), Positives = 99/131 (74%)
Query: 266 RESGVVQRLSKAAQEELMNIVTIFLGLGIGSTMRAESFLTPKTLMILALGIVAFASATAG 325
RESGVV+RLS Q L+NIVTIFLGL +G+ + A+ FL P+TL IL LG++AF TA
Sbjct: 2 RESGVVERLSDTVQNALINIVTIFLGLSVGAKLVADKFLQPQTLGILVLGVIAFCVGTAA 61
Query: 326 GVLFGKLMMKISGGRINPMIGAAGVSAVPMSARVVQKLASEEDPGNFILMHAMGPNVAGV 385
GVL KLM S +INP+IG+AGVSAVPM+ARV K+ E D NF+LMHAMGPNVAGV
Sbjct: 62 GVLMAKLMNVFSRHKINPLIGSAGVSAVPMAARVSNKVGLEADGQNFLLMHAMGPNVAGV 121
Query: 386 IGTAVVAGVFL 396
IG+A+ AGV L
Sbjct: 122 IGSAIAAGVML 132
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.142 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138635349
Number of Sequences: 2977
Number of extensions: 5746536
Number of successful extensions: 19167
Number of sequences better than 1.0e-10: 16
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19128
Number of HSP's gapped (non-prelim): 21
length of query: 400
length of database: 189,106,746
effective HSP length: 56
effective length of query: 344
effective length of database: 155,591,474
effective search space: 53523467056
effective search space used: 53523467056
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.5 bits)
S2: 166 (69.1 bits)