BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1779 (PAB1779) DE:Hypothetical protein
         (146 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75134 hypothetical protein PAB1779 - Pyrococcus abyssi (st...   297  4e-80
pir||C71080 hypothetical protein PH0907 - Pyrococcus horikoshii ...   196  8e-50
gi|10954535 M. jannaschii predicted coding region MJECS03 [Metha...   130  9e-30
gi|11499928 conserved hypothetical protein [Archaeoglobus fulgid...   129  1e-29

>pir||E75134 hypothetical protein PAB1779 - Pyrococcus abyssi (strain Orsay)
           >gi|5458301|emb|CAB49790.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 146
           
 Score =  297 bits (753), Expect = 4e-80
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MDIVGVTFPVPREFLDRIFKEKKRVFVKPATLRVEPGMKVIFYASRKDQGFYGEAEVEGV 60
           MDIVGVTFPVPREFLDRIFKEKKRVFVKPATLRVEPGMKVIFYASRKDQGFYGEAEVEGV
Sbjct: 1   MDIVGVTFPVPREFLDRIFKEKKRVFVKPATLRVEPGMKVIFYASRKDQGFYGEAEVEGV 60

Query: 61  ESFASVEEIIEKYGDELFLTPEELRKYERDRKRWQSRGRRARPWLVIRLRNVREYKRKVK 120
           ESFASVEEIIEKYGDELFLTPEELRKYERDRKRWQSRGRRARPWLVIRLRNVREYKRKVK
Sbjct: 61  ESFASVEEIIEKYGDELFLTPEELRKYERDRKRWQSRGRRARPWLVIRLRNVREYKRKVK 120

Query: 121 PKRFVVVSGRYVKKDEYEEIVRRAEP 146
           PKRFVVVSGRYVKKDEYEEIVRRAEP
Sbjct: 121 PKRFVVVSGRYVKKDEYEEIVRRAEP 146


>pir||C71080 hypothetical protein PH0907 - Pyrococcus horikoshii
           >gi|3257318|dbj|BAA30001.1| (AP000004) 159aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 159
           
 Score =  196 bits (494), Expect = 8e-50
 Identities = 96/135 (71%), Positives = 118/135 (87%), Gaps = 2/135 (1%)

Query: 6   VTFPVPREFLDRIFKEKKRVFVKPATLRVEPGMKVIFYASRKDQGFYGEAEVEGVESFAS 65
           VTFPVP E+L+RIF E K VFVKPATL+VE GMKVIFYASR++QG++GEAEVE VE + +
Sbjct: 22  VTFPVPWEYLNRIF-EGKNVFVKPATLKVEEGMKVIFYASRENQGWHGEAEVERVEHYTN 80

Query: 66  VEEIIEKYGDELFLTPEELRKYERDRKRWQSRGRRARPWLVIRLRNVREYKRKVKPKRFV 125
           VEEII+KYGD+LFLTPEELR+Y+++R RW S GRR RPW+V+ LRN+R+Y R VKPK+F+
Sbjct: 81  VEEIIKKYGDKLFLTPEELRRYDKERSRWGS-GRRKRPWMVLVLRNIRKYPRVVKPKKFI 139

Query: 126 VVSGRYVKKDEYEEI 140
           VVSGRYV + EYEEI
Sbjct: 140 VVSGRYVDEKEYEEI 154


>gi|10954535 M. jannaschii predicted coding region MJECS03 [Methanococcus
           jannaschii] >gi|2496197|sp|Q60302|YY03_METJA
           HYPOTHETICAL PROTEIN MJECS03 >gi|2129059|pir||C64516
           hypothetical protein MJECS03 - Methanococcus jannaschii
           plasmid pURB801 >gi|1522637|gb|AAC37061.1| (L77119) M.
           jannaschii predicted coding region MJECS03
           [Methanococcus jannaschii]
           Length = 108
           
 Score =  130 bits (323), Expect = 9e-30
 Identities = 59/107 (55%), Positives = 84/107 (78%), Gaps = 1/107 (0%)

Query: 38  MKVIFYASRKDQGFYGEAEVEGVESFASVEEIIEKYGDELFLTPEELRKY-ERDRKRWQS 96
           MK+IFYASR++QGFYGEAE+E VE F +  +I+EKY + LFLT EE +KY E   K+W  
Sbjct: 1   MKIIFYASREEQGFYGEAEIEEVEFFENPMKILEKYKNNLFLTEEEFKKYIEDSNKKWGY 60

Query: 97  RGRRARPWLVIRLRNVREYKRKVKPKRFVVVSGRYVKKDEYEEIVRR 143
             ++ +PW+VI L+N+R+Y + VKPKRF+ V G+YVK+DEYE+I+++
Sbjct: 61  GKKKKKPWIVIILKNIRKYPKVVKPKRFIPVCGKYVKEDEYEQILKK 107


>gi|11499928 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7448942|pir||G69543 conserved hypothetical protein
           AF2351 - Archaeoglobus fulgidus
           >gi|2650746|gb|AAB91313.1| (AE001114) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 139
           
 Score =  129 bits (322), Expect = 1e-29
 Identities = 59/136 (43%), Positives = 94/136 (68%), Gaps = 4/136 (2%)

Query: 3   IVGVTFPVPREFLDRIFKEKKRVFVKPATL--RVEPGMKVIFYASRKDQGFYGEAEVEGV 60
           IVGVT+P+P+ F+DR FK+ K VFVKPAT+   ++PGMK +FY S +D GF GEA ++ V
Sbjct: 4   IVGVTYPIPKRFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSHEDTGFVGEARIKRV 63

Query: 61  ESFASVEEIIEKYGDELFLTPEELRKYERDRKRWQSR--GRRARPWLVIRLRNVREYKRK 118
               +  +  E +GD +FLT +EL++Y + ++RW  R   ++ + W+ I L +V++Y + 
Sbjct: 64  VLSENPMQFFETFGDRVFLTKDELKEYMKSQERWGRRRESKKKKLWMAIELEDVKKYDKP 123

Query: 119 VKPKRFVVVSGRYVKK 134
           +KPKR V V G+Y+++
Sbjct: 124 IKPKRLVPVGGQYLRE 139


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.142    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54645563
Number of Sequences: 2977
Number of extensions: 2204518
Number of successful extensions: 6309
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6301
Number of HSP's gapped (non-prelim): 4
length of query: 146
length of database: 189,106,746
effective HSP length: 52
effective length of query: 94
effective length of database: 157,985,422
effective search space: 14850629668
effective search space used: 14850629668
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)