BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1780 (PAB1780) DE:Hypothetical protein
(142 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75134 hypothetical protein PAB1780 - Pyrococcus abyssi (st... 298 2e-80
pir||E71096 hypothetical protein PH1033 - Pyrococcus horikoshii ... 217 4e-56
gi|11499933 conserved hypothetical protein [Archaeoglobus fulgid... 199 1e-50
gi|10954523 M. jannaschii predicted coding region MJECL36 [Metha... 182 1e-45
sp|Q58777|YD82_METJA HYPOTHETICAL PROTEIN MJ1382 >gi|2128822|pir... 182 1e-45
pir||G75220 hypothetical protein PAB2158 - Pyrococcus abyssi (st... 85 4e-16
gb|AAK42718.1| Conserved hypothetical protein [Sulfolobus solfat... 80 2e-14
>pir||D75134 hypothetical protein PAB1780 - Pyrococcus abyssi (strain Orsay)
>gi|5458300|emb|CAB49789.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 142
Score = 298 bits (755), Expect = 2e-80
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MSYWLCITNRDNWKVVKEKNVWGVPRRHENTMKRVKPGDKLVFYVKQESRKGEVLEPMIV 60
MSYWLCITNRDNWKVVKEKNVWGVPRRHENTMKRVKPGDKLVFYVKQESRKGEVLEPMIV
Sbjct: 1 MSYWLCITNRDNWKVVKEKNVWGVPRRHENTMKRVKPGDKLVFYVKQESRKGEVLEPMIV 60
Query: 61 GIFEVVSEPYSDSTKIFKSHTPGETYPIRVKIRPIKIGEVKFKPLIPKLSFIKNKKKWSG 120
GIFEVVSEPYSDSTKIFKSHTPGETYPIRVKIRPIKIGEVKFKPLIPKLSFIKNKKKWSG
Sbjct: 61 GIFEVVSEPYSDSTKIFKSHTPGETYPIRVKIRPIKIGEVKFKPLIPKLSFIKNKKKWSG 120
Query: 121 HLMGKAMREIPEEDYKLIESLL 142
HLMGKAMREIPEEDYKLIESLL
Sbjct: 121 HLMGKAMREIPEEDYKLIESLL 142
>pir||E71096 hypothetical protein PH1033 - Pyrococcus horikoshii
>gi|3257448|dbj|BAA30131.1| (AP000004) 145aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 145
Score = 217 bits (548), Expect = 4e-56
Identities = 101/144 (70%), Positives = 119/144 (82%), Gaps = 2/144 (1%)
Query: 1 MSYWLCITNRDNWKVVKEKNVWGVPRRHENTMKRVKPGDKLVFYVKQESRK-GEVLEPMI 59
M+YW+CITNR+NW+V+K NVWGVP++H+NT+ RVKPGDKLV YV+QE K G +LEP I
Sbjct: 1 MTYWICITNRENWEVIKRHNVWGVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKI 60
Query: 60 VGIFEVVSEPYSDSTKIFKSHTPG-ETYPIRVKIRPIKIGEVKFKPLIPKLSFIKNKKKW 118
VGI+EV SEPY D ++IFK H G ETYP RVKI+PIKIGE+ FKPLI L FIKNKK+W
Sbjct: 61 VGIYEVTSEPYVDFSRIFKPHRGGKETYPYRVKIKPIKIGEINFKPLINDLKFIKNKKRW 120
Query: 119 SGHLMGKAMREIPEEDYKLIESLL 142
S H GKAMRE+PEEDYKLIE LL
Sbjct: 121 SMHFFGKAMRELPEEDYKLIEKLL 144
>gi|11499933 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451083|pir||D69544 conserved hypothetical protein
AF2356 - Archaeoglobus fulgidus
>gi|2650738|gb|AAB91306.1| (AE001113) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 147
Score = 199 bits (501), Expect = 1e-50
Identities = 90/142 (63%), Positives = 115/142 (80%), Gaps = 4/142 (2%)
Query: 1 MSYWLCITNRDNWKVVKEKNVWGVPRRHENTMKRVKPGDKLVFYVKQESRKGEVLEPMIV 60
M+YWLCITN DNW+V+KEKN+WGVP RH+NT+ +VK GDKL+ Y+KQE+ GEV IV
Sbjct: 1 MAYWLCITNEDNWRVIKEKNIWGVPERHKNTIAKVKKGDKLLIYIKQENVNGEVKPSRIV 60
Query: 61 GIFEVVSEPYSDSTKIFKS--HTPGETYPIRVKIRPIKIGE--VKFKPLIPKLSFIKNKK 116
++E SE Y DS++IFKS ET+P+R+K++P+KI + ++FKPLIPKL FI NK+
Sbjct: 61 AVYETASEVYRDSSRIFKSPKGMGNETFPLRIKLKPVKIFDRPIEFKPLIPKLKFITNKR 120
Query: 117 KWSGHLMGKAMREIPEEDYKLI 138
KWSGHLMGKAMREIPEEDY+LI
Sbjct: 121 KWSGHLMGKAMREIPEEDYRLI 142
>gi|10954523 M. jannaschii predicted coding region MJECL36 [Methanococcus
jannaschii] >gi|2496236|sp|Q60257|YZ36_METJA
HYPOTHETICAL PROTEIN MJECL36 >gi|2129050|pir||C64514
hypothetical protein MJECL36 - Methanococcus jannaschii
plasmid pURB800 >gi|1500679|gb|AAC37105.1| (L77118) M.
jannaschii predicted coding region MJECL36
[Methanococcus jannaschii]
Length = 147
Score = 182 bits (458), Expect = 1e-45
Identities = 89/142 (62%), Positives = 107/142 (74%), Gaps = 5/142 (3%)
Query: 1 MSYWLCITNRDNWKVVKEKNVWGVPRRHENTMKRVKPGDKLVFYVKQESRKGEVLEPMIV 60
M+YWLCITN DNWKV+KEK +WGV R++NT+ +VK GDKL+ Y Q S K + P I
Sbjct: 4 MAYWLCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQRSGK-DYKPPYIR 62
Query: 61 GIFEVVSEPYSDSTKIFK--SHTPGETYPIRVKIRPIKIGE--VKFKPLIPKLSFIKNKK 116
G++EVVSE Y DS+KIFK P E +P RVK++ IK+ E + FK LIPKL FI NKK
Sbjct: 63 GVYEVVSEVYKDSSKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKK 122
Query: 117 KWSGHLMGKAMREIPEEDYKLI 138
+WSGHLMGKAMREIPEEDYKLI
Sbjct: 123 RWSGHLMGKAMREIPEEDYKLI 144
>sp|Q58777|YD82_METJA HYPOTHETICAL PROTEIN MJ1382 >gi|2128822|pir||E64472 hypothetical
protein MJ1382 - Methanococcus jannaschii
>gi|1592028|gb|AAB99392.1| (U67578) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 146
Score = 182 bits (458), Expect = 1e-45
Identities = 88/142 (61%), Positives = 106/142 (73%), Gaps = 5/142 (3%)
Query: 1 MSYWLCITNRDNWKVVKEKNVWGVPRRHENTMKRVKPGDKLVFYVKQESRKGEVLEPMIV 60
M+YWLCITN DNWKV+K+K +WGV RH+NT+ +VK GDKL+ Y Q S K + P I
Sbjct: 1 MAYWLCITNEDNWKVIKDKKIWGVAERHKNTINKVKVGDKLIIYEIQRSGK-DYKPPYIR 59
Query: 61 GIFEVVSEPYSDSTKIFK--SHTPGETYPIRVKIRPIK--IGEVKFKPLIPKLSFIKNKK 116
G++EVVSE Y DS+KIFK P E +P RVK++ +K + + FK LIPKL FI NKK
Sbjct: 60 GVYEVVSEVYKDSSKIFKPTPRNPNEKFPYRVKLKEVKVFVPPINFKDLIPKLKFITNKK 119
Query: 117 KWSGHLMGKAMREIPEEDYKLI 138
KWSGHLMGKAMREIPEEDYKLI
Sbjct: 120 KWSGHLMGKAMREIPEEDYKLI 141
>pir||G75220 hypothetical protein PAB2158 - Pyrococcus abyssi (strain Orsay)
>gi|5457723|emb|CAB49214.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 111
Score = 85.0 bits (207), Expect = 4e-16
Identities = 48/97 (49%), Positives = 59/97 (60%), Gaps = 30/97 (30%)
Query: 9 NRDNWKVVKEKNVWGVPRRHENTMKRVKPGDKLVFYVKQESRKGEVLEPMIVGIFEVVSE 68
NRDNWKVVK+KN+W ESR +EP IVGIFEVVSE
Sbjct: 40 NRDNWKVVKKKNIW-------------------------ESR----IEPKIVGIFEVVSE 70
Query: 69 PYSDSTKIFKSHTP-GETYPIRVKIRPIKIGEVKFKP 104
PY+DS++ FKS ET P+R+KIRP+K+GE+ FKP
Sbjct: 71 PYTDSSRNFKSPPHLNETSPLRIKIRPLKLGELDFKP 107
>gb|AAK42718.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 174
Score = 79.6 bits (193), Expect = 2e-14
Identities = 49/147 (33%), Positives = 75/147 (50%), Gaps = 10/147 (6%)
Query: 1 MSYWLCITNRDNWKVVKEKNVWGVPRRHENTMKRVKPGDKLVFYVKQESRKGEVLEPMIV 60
++YWL D W V+++K ++G EN + +K GD ++ YV + K IV
Sbjct: 26 VTYWLVPIQEDMWDVIRDKGIYGYK---ENLEEFIKEGDYIIIYVSKYYAKR--YGGKIV 80
Query: 61 GIFEVVSEPYSDSTKIFKSHTPGET--YPIRVKIRPIKIGEVKFKPLIPKLSFIKNK--- 115
GI +V+S Y D T I+ T Y RVK+ P+ IGE K ++ K+ FI++K
Sbjct: 81 GIVKVLSNWYEDQTPIYPEETVRNKGIYIYRVKVEPVVIGECDMKKILDKIRFIEDKGQI 140
Query: 116 KKWSGHLMGKAMREIPEEDYKLIESLL 142
K+ + R IPE D K++E L
Sbjct: 141 AKYLRNAPANLKRPIPESDAKIVEECL 167
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57474887
Number of Sequences: 2977
Number of extensions: 2299673
Number of successful extensions: 4624
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4604
Number of HSP's gapped (non-prelim): 7
length of query: 142
length of database: 189,106,746
effective HSP length: 51
effective length of query: 91
effective length of database: 158,583,909
effective search space: 14431135719
effective search space used: 14431135719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)