BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1784 (hydB-1) DE:HYDROGENASE (EC 1.12.2.1) (CYTOCHROME-C3
HYDROGENASE BETA CHAIN)
(367 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75133 cytochrome-c3 hydrogenase (EC 1.12.2.1) beta chain P... 795 0.0
pir||G71074 probable cytochrome-c3 hydrogenase alpha chain - Pyr... 746 0.0
pir||S48833 cytochrome-c3 hydrogenase (EC 1.12.2.1) alpha chain ... 740 0.0
gb|AAB94933.1| (AF039208) NiFe hydrogenase beta subunit [Thermoc... 669 0.0
pir||G75069 cytochrome-c3 hydrogenase (EC 1.12.2.1) beta chain P... 372 e-102
gb|AAF61851.1|AF176650_1 (AF176650) sulfhydrogenase II subunit b... 358 8e-98
sp|P26474|ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAE... 115 9e-25
emb|CAC11194.1| (AL445063) anaerobic sulfite reduction protein A... 108 9e-23
>pir||E75133 cytochrome-c3 hydrogenase (EC 1.12.2.1) beta chain PAB1784 -
Pyrococcus abyssi (strain Orsay)
>gi|5458293|emb|CAB49782.1| (AJ248285) HYDROGENASE (EC
1.12.2.1) (CYTOCHROME-C3 HYDROGENASE BETA CHAIN)
[Pyrococcus abyssi]
Length = 367
Score = 795 bits (2031), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MRYVKLPKENVYTFLERLKDWGKLYAPVKISEKFYDFREIDDVRKVEFHYTRTIMPPKKF 60
MRYVKLPKENVYTFLERLKDWGKLYAPVKISEKFYDFREIDDVRKVEFHYTRTIMPPKKF
Sbjct: 1 MRYVKLPKENVYTFLERLKDWGKLYAPVKISEKFYDFREIDDVRKVEFHYTRTIMPPKKF 60
Query: 61 FFKPREKLFEFDISKPEYREVIEDVEPFVLFGVHACDIYGLKLLDTVYLDEFPDKYYKVR 120
FFKPREKLFEFDISKPEYREVIEDVEPFVLFGVHACDIYGLKLLDTVYLDEFPDKYYKVR
Sbjct: 61 FFKPREKLFEFDISKPEYREVIEDVEPFVLFGVHACDIYGLKLLDTVYLDEFPDKYYKVR 120
Query: 121 REKGIIIGISCMPDEYCFCNLRETDFADDGFDLFLHELPDGWLVRVGTPTGHRIVDKNIK 180
REKGIIIGISCMPDEYCFCNLRETDFADDGFDLFLHELPDGWLVRVGTPTGHRIVDKNIK
Sbjct: 121 REKGIIIGISCMPDEYCFCNLRETDFADDGFDLFLHELPDGWLVRVGTPTGHRIVDKNIK 180
Query: 181 LFEEVTNEDICAFREFEKKRHEAFKYHEDWGNLRYLLELEMEHPMWDEEAEKCLACGICN 240
LFEEVTNEDICAFREFEKKRHEAFKYHEDWGNLRYLLELEMEHPMWDEEAEKCLACGICN
Sbjct: 181 LFEEVTNEDICAFREFEKKRHEAFKYHEDWGNLRYLLELEMEHPMWDEEAEKCLACGICN 240
Query: 241 TTCPTCRCYEVQDIVNLDGVTGYRERRWDSCQFRSHGLVAGGHNFRPTKKSRFLNRYLCK 300
TTCPTCRCYEVQDIVNLDGVTGYRERRWDSCQFRSHGLVAGGHNFRPTKKSRFLNRYLCK
Sbjct: 241 TTCPTCRCYEVQDIVNLDGVTGYRERRWDSCQFRSHGLVAGGHNFRPTKKSRFLNRYLCK 300
Query: 301 NSYNEKLGISFCVGCGRCTAFCPAGISFVRNLRRILGLEEQKCPPSVSEEIPKRGFAYSP 360
NSYNEKLGISFCVGCGRCTAFCPAGISFVRNLRRILGLEEQKCPPSVSEEIPKRGFAYSP
Sbjct: 301 NSYNEKLGISFCVGCGRCTAFCPAGISFVRNLRRILGLEEQKCPPSVSEEIPKRGFAYSP 360
Query: 361 GVGGEEE 367
GVGGEEE
Sbjct: 361 GVGGEEE 367
>pir||G71074 probable cytochrome-c3 hydrogenase alpha chain - Pyrococcus
horikoshii >gi|3257710|dbj|BAA30393.1| (AP000005) 372aa
long hypothetical cytochrome-c3 hydrogenase alpha chain
[Pyrococcus horikoshii]
Length = 372
Score = 746 bits (1905), Expect = 0.0
Identities = 335/367 (91%), Positives = 355/367 (96%)
Query: 1 MRYVKLPKENVYTFLERLKDWGKLYAPVKISEKFYDFREIDDVRKVEFHYTRTIMPPKKF 60
+RYVKLPKEN Y FLERLK+WGKLYAPVKISEKFYDFREIDDVRKVEFHYTRTIMPPKKF
Sbjct: 6 LRYVKLPKENTYEFLERLKEWGKLYAPVKISEKFYDFREIDDVRKVEFHYTRTIMPPKKF 65
Query: 61 FFKPREKLFEFDISKPEYREVIEDVEPFVLFGVHACDIYGLKLLDTVYLDEFPDKYYKVR 120
FFKPREK+FEFD+SKPEY+EVIEDVEPFVLFGVHACDIYGLK+LDT+YLDE PDKYYK+R
Sbjct: 66 FFKPREKMFEFDLSKPEYKEVIEDVEPFVLFGVHACDIYGLKILDTIYLDELPDKYYKIR 125
Query: 121 REKGIIIGISCMPDEYCFCNLRETDFADDGFDLFLHELPDGWLVRVGTPTGHRIVDKNIK 180
REKGIIIGISCMPDEYCFCNLR+TDFADDGFDLFLHELPDGWLVRVG+PTGHRIVDKNIK
Sbjct: 126 REKGIIIGISCMPDEYCFCNLRKTDFADDGFDLFLHELPDGWLVRVGSPTGHRIVDKNIK 185
Query: 181 LFEEVTNEDICAFREFEKKRHEAFKYHEDWGNLRYLLELEMEHPMWDEEAEKCLACGICN 240
LFEEVT+EDICAFREFEKKR EAFKYHEDW NLRYLLELEMEHPMW+EEA KCLACGIC
Sbjct: 186 LFEEVTDEDICAFREFEKKRQEAFKYHEDWDNLRYLLELEMEHPMWEEEANKCLACGICT 245
Query: 241 TTCPTCRCYEVQDIVNLDGVTGYRERRWDSCQFRSHGLVAGGHNFRPTKKSRFLNRYLCK 300
TCPTCRCYEVQDIVNLDG+TGYRERRWDSCQFRSHGLVAGGHNFRPTKK RF NRYLCK
Sbjct: 246 LTCPTCRCYEVQDIVNLDGITGYRERRWDSCQFRSHGLVAGGHNFRPTKKDRFRNRYLCK 305
Query: 301 NSYNEKLGISFCVGCGRCTAFCPAGISFVRNLRRILGLEEQKCPPSVSEEIPKRGFAYSP 360
N+YNEKLG+S+CVGCGRCTAFCPAGISFVRNLR ILG EEQ+CPP+VSEEIPK+GFAYSP
Sbjct: 306 NAYNEKLGLSYCVGCGRCTAFCPAGISFVRNLRVILGFEEQRCPPNVSEEIPKKGFAYSP 365
Query: 361 GVGGEEE 367
GVGG+EE
Sbjct: 366 GVGGDEE 372
>pir||S48833 cytochrome-c3 hydrogenase (EC 1.12.2.1) alpha chain - Pyrococcus
furiosus >gi|563905|emb|CAA53034.1| (X75255) hydrogenase
(alpha subunit) [Pyrococcus furiosus]
Length = 367
Score = 740 bits (1889), Expect = 0.0
Identities = 332/365 (90%), Positives = 352/365 (95%)
Query: 1 MRYVKLPKENVYTFLERLKDWGKLYAPVKISEKFYDFREIDDVRKVEFHYTRTIMPPKKF 60
MRYVKLPKEN Y FLERLKDWGKLYAPVKIS+KFYDFREIDDVRK+EFHY RTIMPPKKF
Sbjct: 1 MRYVKLPKENTYEFLERLKDWGKLYAPVKISDKFYDFREIDDVRKIEFHYNRTIMPPKKF 60
Query: 61 FFKPREKLFEFDISKPEYREVIEDVEPFVLFGVHACDIYGLKLLDTVYLDEFPDKYYKVR 120
FFKPREKLFEFDISKPEYREVIE+VEPF++FGVHACDIYGLK+LDTVYLDEFPDKYYKVR
Sbjct: 61 FFKPREKLFEFDISKPEYREVIEEVEPFIIFGVHACDIYGLKILDTVYLDEFPDKYYKVR 120
Query: 121 REKGIIIGISCMPDEYCFCNLRETDFADDGFDLFLHELPDGWLVRVGTPTGHRIVDKNIK 180
REKGIIIGISCMPDEYCFCNLRETDFADDGFDLF HELPDGWLVRVGTPTGHR+VDKNIK
Sbjct: 121 REKGIIIGISCMPDEYCFCNLRETDFADDGFDLFFHELPDGWLVRVGTPTGHRLVDKNIK 180
Query: 181 LFEEVTNEDICAFREFEKKRHEAFKYHEDWGNLRYLLELEMEHPMWDEEAEKCLACGICN 240
LFEEVT++DICAFR+FEK+R +AF+YHEDWGNLRYLLELEMEHPMWDEEA+KCLACGICN
Sbjct: 181 LFEEVTDKDICAFRDFEKRRQQAFQYHEDWGNLRYLLELEMEHPMWDEEADKCLACGICN 240
Query: 241 TTCPTCRCYEVQDIVNLDGVTGYRERRWDSCQFRSHGLVAGGHNFRPTKKSRFLNRYLCK 300
TTCPTCRCYEVQDIVNLDGVTGYRERRWDSCQFRSHGLVAGGHNFRPTKK RF NRYLCK
Sbjct: 241 TTCPTCRCYEVQDIVNLDGVTGYRERRWDSCQFRSHGLVAGGHNFRPTKKDRFRNRYLCK 300
Query: 301 NSYNEKLGISFCVGCGRCTAFCPAGISFVRNLRRILGLEEQKCPPSVSEEIPKRGFAYSP 360
N+YNEKLG+S+CVGCGRCTAFCPA ISFV NLRRILGLEE KCPP+VSEEIPKRGFAYS
Sbjct: 301 NAYNEKLGLSYCVGCGRCTAFCPANISFVGNLRRILGLEENKCPPTVSEEIPKRGFAYSS 360
Query: 361 GVGGE 365
+ G+
Sbjct: 361 NIRGD 365
>gb|AAB94933.1| (AF039208) NiFe hydrogenase beta subunit [Thermococcus litoralis]
Length = 369
Score = 669 bits (1707), Expect = 0.0
Identities = 295/367 (80%), Positives = 333/367 (90%)
Query: 1 MRYVKLPKENVYTFLERLKDWGKLYAPVKISEKFYDFREIDDVRKVEFHYTRTIMPPKKF 60
+RYVKLPKEN Y FLERLK+WG LYAPVKISEKFYDFRE++D+ ++EF Y RTIMPPKKF
Sbjct: 3 LRYVKLPKENTYEFLERLKEWGTLYAPVKISEKFYDFREVEDMSQIEFKYNRTIMPPKKF 62
Query: 61 FFKPREKLFEFDISKPEYREVIEDVEPFVLFGVHACDIYGLKLLDTVYLDEFPDKYYKVR 120
FF PREK+FEF ISK EY+EVIE+VEPFV+FGVHACDI+GLK++DT+YLDE PDKYYKVR
Sbjct: 63 FFLPREKMFEFSISKAEYKEVIENVEPFVVFGVHACDIFGLKIMDTIYLDELPDKYYKVR 122
Query: 121 REKGIIIGISCMPDEYCFCNLRETDFADDGFDLFLHELPDGWLVRVGTPTGHRIVDKNIK 180
REKGIIIGISC+PDEYCFCNLRETDFADDGFDLFLHELPDGWLVRVGTPTGHRIVDKNIK
Sbjct: 123 REKGIIIGISCVPDEYCFCNLRETDFADDGFDLFLHELPDGWLVRVGTPTGHRIVDKNIK 182
Query: 181 LFEEVTNEDICAFREFEKKRHEAFKYHEDWGNLRYLLELEMEHPMWDEEAEKCLACGICN 240
LFEEVT++D+C FR+FE K+ + F+YHEDW +LRYLLELE EHPMWDE+++ CLACG CN
Sbjct: 183 LFEEVTSQDVCNFRDFENKKQQMFRYHEDWADLRYLLELETEHPMWDEQSDICLACGNCN 242
Query: 241 TTCPTCRCYEVQDIVNLDGVTGYRERRWDSCQFRSHGLVAGGHNFRPTKKSRFLNRYLCK 300
TTCPTCRC++V+DI N+DGVTG R RRWDSCQ HG+VAGGHNFRPTKKSRF+NRY+CK
Sbjct: 243 TTCPTCRCFDVRDIPNIDGVTGVRVRRWDSCQLVRHGMVAGGHNFRPTKKSRFMNRYMCK 302
Query: 301 NSYNEKLGISFCVGCGRCTAFCPAGISFVRNLRRILGLEEQKCPPSVSEEIPKRGFAYSP 360
NSY EKLG+S+CVGCGRCT FCPA ISFVRNLR ILGLEE CPP +SEEIPKRGFAY P
Sbjct: 303 NSYVEKLGLSYCVGCGRCTYFCPAEISFVRNLRTILGLEESSCPPRISEEIPKRGFAYGP 362
Query: 361 GVGGEEE 367
VGG E+
Sbjct: 363 SVGGGEQ 369
>pir||G75069 cytochrome-c3 hydrogenase (EC 1.12.2.1) beta chain PAB0638 -
Pyrococcus abyssi (strain Orsay)
>gi|5458372|emb|CAB49860.1| (AJ248286) HYDROGENASE (EC
1.12.2.1) (CYTOCHROME-C3 HYDROGENASE BETA CHAIN)
[Pyrococcus abyssi]
Length = 334
Score = 372 bits (945), Expect = e-102
Identities = 183/335 (54%), Positives = 227/335 (67%), Gaps = 6/335 (1%)
Query: 1 MRYVKLPKENVYTFLERLKDWGKLYAPVKISEKFYDFREIDDVRKVEFHYTRTIMPPKKF 60
MRYVKLP EN F ERLK+ GK+YAPV+ Y F E+ ++ +V +YTRTI+PPKKF
Sbjct: 1 MRYVKLPVENFQEFFERLKEIGKIYAPVR-HNSIYKFEEVQELSEVSLNYTRTILPPKKF 59
Query: 61 FFKPREKLFEFDISKPEYREVIEDVEPFVLFGVHACDIYGLKLLDTVYLDEFPDKYYKVR 120
F KPR+ + + K E I+D E FVLFGVH+CDI+ LK+LD YL E D YYK R
Sbjct: 60 FVKPRDPMSKL---KGEEWIEIKDGEKFVLFGVHSCDIHALKILDKAYLSEPADPYYKTR 116
Query: 121 REKGIIIGISCMPDEYCFCNLRETDFADDGFDLFLHELPDGWLVRVGTPTGHRIVDKNIK 180
RE I+GISCMPDEYCFC T FA DGFDLFLHELPDGWLVRVG+ GH +V KN +
Sbjct: 117 RENAFIVGISCMPDEYCFCKSLGTHFAMDGFDLFLHELPDGWLVRVGSIKGHEVVWKNQE 176
Query: 181 LFEEVTNEDICAFREFEKKRHEAFKYHEDWGNLRYLLELEMEHPMWDEEAEKCLACGICN 240
LFE+VT ED+ F+EFE++R ++FK L +L+L + +W + A+KCL CG C
Sbjct: 177 LFEDVTEEDLKNFKEFEERRAKSFKRELSKEGLADILDLAFDSKVWRKYADKCLGCGNCT 236
Query: 241 TTCPTCRCYEVQDIVNLDGVTGYRERRWDSCQFRSHGLVAGGHNFRPTKKSRFLNRYLCK 300
CPTCRCYEV D + R RR+DSC +HGLVAGGHNFRPT+ RF +RY CK
Sbjct: 237 LVCPTCRCYEVCDNW-IRAYESVRVRRYDSCFMVTHGLVAGGHNFRPTRLDRFRHRYYCK 295
Query: 301 NSYNEKLGISFCVGCGRCTAFCPAGISFVRNLRRI 335
+ ++ G + CVGCGRC FCPAGI V+ L +
Sbjct: 296 SYFDPSSGFN-CVGCGRCDEFCPAGIEHVKVLEEV 329
>gb|AAF61851.1|AF176650_1 (AF176650) sulfhydrogenase II subunit b [Pyrococcus furiosus]
Length = 334
Score = 358 bits (908), Expect = 8e-98
Identities = 177/335 (52%), Positives = 226/335 (66%), Gaps = 6/335 (1%)
Query: 1 MRYVKLPKENVYTFLERLKDWGKLYAPVKISEKFYDFREIDDVRKVEFHYTRTIMPPKKF 60
MRYVKL E F RLK+ G++Y PV+ + Y F E++ + ++ YTRTI+PPKKF
Sbjct: 1 MRYVKLHSEYFPEFFNRLKEVGRVYGPVRHNST-YRFEEVNSIDELSLDYTRTILPPKKF 59
Query: 61 FFKPREKLFEFDISKPEYREVIEDVEPFVLFGVHACDIYGLKLLDTVYLDEFPDKYYKVR 120
F +PR+ +F+ I K E EV D + FVLFGVH+CDI+G+K+LD VYL PD YY+ R
Sbjct: 60 FIRPRDAMFK--IQKNEVTEVDGDGK-FVLFGVHSCDIHGIKILDKVYLSNPPDPYYERR 116
Query: 121 REKGIIIGISCMPDEYCFCNLRETDFADDGFDLFLHELPDGWLVRVGTPTGHRIVDKNIK 180
R+ I+GISCMPDEYCFC TDFA DGFD+FLHELPDGWLVRVG+ GH V +N
Sbjct: 117 RKNAFIVGISCMPDEYCFCKSLGTDFAMDGFDIFLHELPDGWLVRVGSVKGHEFVWENQD 176
Query: 181 LFEEVTNEDICAFREFEKKRHEAFKYHEDWGNLRYLLELEMEHPMWDEEAEKCLACGICN 240
+F++VT ED+ F+EFE+KR +AFK + L +L+L +W + AEKCL CG C
Sbjct: 177 IFDDVTEEDLRNFKEFEEKRAKAFKKSLNKEGLADILDLAFTSKVWKKYAEKCLGCGNCT 236
Query: 241 TTCPTCRCYEVQDIVNLDGVTGYRERRWDSCQFRSHGLVAGGHNFRPTKKSRFLNRYLCK 300
CPTCRCYEV D + R RR+DSC +HGLVAGGHNFRPT+ RF +RY CK
Sbjct: 237 IVCPTCRCYEVCD-TWVRAYEALRMRRYDSCFMPTHGLVAGGHNFRPTRLDRFRHRYYCK 295
Query: 301 NSYNEKLGISFCVGCGRCTAFCPAGISFVRNLRRI 335
N ++ + G + CVGCGRC FCPA I V+ L +
Sbjct: 296 NYFDPEAGFN-CVGCGRCDEFCPARIEHVKVLDEV 329
>sp|P26474|ASRA_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT A (ANAEROBIC SULFITE REDUCTASE
IRON-SULFUR SUBUNIT) >gi|96705|pir||A38453 anaerobic
sulfite reduction protein A - Salmonella typhimurium
>gi|153882|gb|AAA99275.1| (M57706) anaerobic sulfite
reductase [Salmonella typhimurium]
Length = 347
Score = 115 bits (285), Expect = 9e-25
Identities = 98/338 (28%), Positives = 144/338 (41%), Gaps = 25/338 (7%)
Query: 4 VKLPKENVYTFLERLKDWGKLYAPVKISE--KFYD-----FREIDDVRKVEFHYTRTIMP 56
+K+ + ++RL +++AP +F D ++ I R + +H ++ M
Sbjct: 3 IKITPDEFSLLIQRLNKKWRVFAPSAEFRGGRFSDTDNIIYQRISGWRDLIWH-EKSHMS 61
Query: 57 PKKFFFKPREKLFEFDISKPEYREVIEDVEPFVLFGVHACDIYGLKLLDTVYLD--EFPD 114
P E LF FD + E D P ++F ACDI + LD +YL D
Sbjct: 62 PNTIIAPITETLFYFDKDTIQIAET--DTSPIIIFA-RACDINAMSRLDYMYLSNGNNSD 118
Query: 115 KYYKVRREKGIIIGISCMPD-EYCFCNLRETDFADDGFDLFLHELPDGWLVRVGTPTGHR 173
Y++ RE + I C E CFC T+ D + + +G LV + P
Sbjct: 119 YSYQLLREHIRFVLIECEESFENCFCVSMGTN-KTDCYSAAMRFSDEGALVSIRDP---- 173
Query: 174 IVDKNIKLFEEVTNEDICAFREFEKKRHEAFKYHEDWGNLRYLLELEMEHPMWDEEAEKC 233
++ I+ + + E + D +R +L HP+WD +C
Sbjct: 174 FIEAAIQGLGQEADYTPSFVSENRETVVTPDSVCHDPQKIRDIL---THHPLWDAYDSRC 230
Query: 234 LACGICNTTCPTCRCYEVQDIV-NLDGVTGYRERRWDSCQFRSHGLVAGGHNFRPTKKSR 292
++CG C T CPTC CY V D+ + + G R R+W SC +AGGH FR R
Sbjct: 231 ISCGRCTTGCPTCTCYSVFDVAYDENPQRGERRRQWASCMVPGFSDMAGGHGFREKPGER 290
Query: 293 FLNRYLCK-NSYNEKLGIS-FCVGCGRCTAFCPAGISF 328
R L K N Y + GI CVGCGRC CP I F
Sbjct: 291 LRYRALHKVNDYKARNGIEHMCVGCGRCDDRCPQYIKF 328
>emb|CAC11194.1| (AL445063) anaerobic sulfite reduction protein A related protein
[Thermoplasma acidophilum]
Length = 306
Score = 108 bits (268), Expect = 9e-23
Identities = 93/309 (30%), Positives = 136/309 (43%), Gaps = 42/309 (13%)
Query: 29 KISEKFYDFREIDDVRKVEFHYTRTI--MPPKKFFFKPREKLFEFDISKPEYREVIEDVE 86
+ISE++ F +D+ +V F + + KK + P++ F I + E + E
Sbjct: 16 RISEEYETFGAKEDLGEVVFSKISSFSQVSEKKSSYSPKD----FLIKRSENVLEVPRAE 71
Query: 87 PFVLFGVHACDIYGLKLLDTVYLDEFPDKYYKVRREKGIIIGISCMPDEYC---FCNLRE 143
+FGV +CD+ G +L+D L++ D +Y VRRE I + C +E C FC
Sbjct: 72 KKAVFGVKSCDLRGFQLMDLQILNK--DPFYTVRRENTIFVNFVC--NEMCPGGFC---- 123
Query: 144 TDFAD---DGFDLFLHELPDGWLVRVGTPTGHRIVDKNIKLFEEV-TNEDICAFREFEKK 199
T F D FD+ + + + V+ +K K E +ED F K
Sbjct: 124 TSFGGPVLDKFDIQVIHMDGRYFVQAD--------EKYAKFLEGFKVSEDQNVF----SK 171
Query: 200 RHEAFKYHEDWGNLRYLLE-LEMEHPMWDEEAEKCLACGICNTTCPTCRCYEVQDIVNLD 258
EAF H L + + ++ +W+E A C++CG CN +CPTC C +V D
Sbjct: 172 HSEAFLQHYGRLELNNIEKRMKWSSKLWNEFANYCISCGACNYSCPTCYCIDV-----YD 226
Query: 259 GVTGYRERRWDSCQFRSHGLVAGGHNFRPTKKSRFLNRYLCK-NSYNEKLGISFCVGCGR 317
TG R++ WDSC A G N RP R R+ K Y G C GC R
Sbjct: 227 DETG-RKKEWDSCILEGFTRTAAG-NVRPDLSDRLRQRFYHKFKYYRLSKGEYLCTGCNR 284
Query: 318 CTAFCPAGI 326
C CP I
Sbjct: 285 CVDDCPVDI 293
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.145 0.469
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157946779
Number of Sequences: 2977
Number of extensions: 7429228
Number of successful extensions: 16076
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16041
Number of HSP's gapped (non-prelim): 9
length of query: 367
length of database: 189,106,746
effective HSP length: 48
effective length of query: 319
effective length of database: 160,379,370
effective search space: 51161019030
effective search space used: 51161019030
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 166 (69.1 bits)