BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1785 (hydG-1) DE:cytochrome-c3 hydrogenase, subunit gamma
(292 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75133 cytochrome-c3 hydrogenase, chain gamma PAB1785 - Pyr... 617 e-176
pir||H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyr... 593 e-169
pir||S48834 cytochrome-c3 hydrogenase (EC 1.12.2.1) gamma chain ... 591 e-168
emb|CAA53035.1| (X75255) hydrogenase (gamma subunit) [Pyrococcus... 589 e-167
gb|AAB94934.1| (AF039208) NiFe hydrogenase gamma subunit [Thermo... 561 e-159
gb|AAF61852.1|AF176650_2 (AF176650) sulfhydrogenase II subunit g... 257 8e-68
pir||H75069 cytochrome-c3 hydrogenase, chain gamma PAB0639 - Pyr... 257 1e-67
sp|P26475|ASRB_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT B >gi|9... 143 3e-33
emb|CAC11195.1| (AL445063) anaerobic sulfite reduction protein B... 132 4e-30
sp|O57738|PYRK_PYRHO PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 113 3e-24
sp|Q9UXV5|PYRK_PYRAB PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 112 5e-24
sp|Q58841|PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 108 7e-23
sp|P46536|PYRK_BACCL DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS... 102 7e-21
pir||E71212 hypothetical protein PH1965 - Pyrococcus horikoshii ... 96 5e-19
sp|O27280|PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 94 3e-18
sp|P25983|PYRK_BACSU DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS... 84 2e-15
gi|11498139 cytochrome-c3 hydrogenase, subunit gamma [Archaeoglo... 81 2e-14
pir||S44308 phenol 2-monooxygenase (EC 1.14.13.7) reductase comp... 76 6e-13
pir||G82970 probable ferredoxin PA5411 [imported] - Pseudomonas ... 73 4e-12
dbj|BAA06019.1| (D28864) one component of phenol hydroxylase [Ps... 71 2e-11
sp|Q9X1X4|PYRK_THEMA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 71 2e-11
sp|P19734|DMPP_PSESP PHENOL HYDROXYLASE P5 PROTEIN (PHENOL 2-MON... 71 2e-11
pir||S47419 phenolhydroxylase chain F - Pseudomonas putida >gi|5... 69 6e-11
>pir||D75133 cytochrome-c3 hydrogenase, chain gamma PAB1785 - Pyrococcus abyssi
(strain Orsay) >gi|5458292|emb|CAB49781.1| (AJ248285)
cytochrome-c3 hydrogenase, subunit gamma [Pyrococcus
abyssi]
Length = 292
Score = 617 bits (1573), Expect = e-176
Identities = 292/292 (100%), Positives = 292/292 (100%)
Query: 1 MTLPKEVMMPNDNPYALHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTI 60
MTLPKEVMMPNDNPYALHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTI
Sbjct: 1 MTLPKEVMMPNDNPYALHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTI 60
Query: 61 PGVGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEG 120
PGVGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEG
Sbjct: 61 PGVGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEG 120
Query: 121 MDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAE 180
MDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAE
Sbjct: 121 MDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAE 180
Query: 181 NVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRP 240
NVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRP
Sbjct: 181 NVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRP 240
Query: 241 ENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTYFDIVSTPGLLD 292
ENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTYFDIVSTPGLLD
Sbjct: 241 ENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTYFDIVSTPGLLD 292
>pir||H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyrococcus
horikoshii >gi|3257711|dbj|BAA30394.1| (AP000005) 292aa
long hypothetical cytochrome-c3 hydrogenase gamma chain
[Pyrococcus horikoshii]
Length = 292
Score = 593 bits (1513), Expect = e-169
Identities = 279/292 (95%), Positives = 287/292 (97%)
Query: 1 MTLPKEVMMPNDNPYALHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTI 60
M LPK+VMMPNDNPYALHRVKVLKVYDLTE+EKLFLFRFEDPKLAETWTFKPGQFVQLTI
Sbjct: 1 MNLPKDVMMPNDNPYALHRVKVLKVYDLTEKEKLFLFRFEDPKLAETWTFKPGQFVQLTI 60
Query: 61 PGVGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEG 120
PGVGEVPISICSSPMR+GFFELCIRRAGRVTTVVHRLKPGD VLVRGPYGNGFPVDEWEG
Sbjct: 61 PGVGEVPISICSSPMRRGFFELCIRRAGRVTTVVHRLKPGDIVLVRGPYGNGFPVDEWEG 120
Query: 121 MDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAE 180
MDLLLIAAGLG APLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEA+KDLAEAE
Sbjct: 121 MDLLLIAAGLGAAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAIKDLAEAE 180
Query: 181 NVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRP 240
NVKIIQSVTRDP+WPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYK+VFE+LINYGYRP
Sbjct: 181 NVKIIQSVTRDPNWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKSVFEALINYGYRP 240
Query: 241 ENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTYFDIVSTPGLLD 292
ENIYVTLER+MKCGIGKCGHCV GTSTS KYICKDGPVFTYFDIVSTPGLLD
Sbjct: 241 ENIYVTLERKMKCGIGKCGHCVVGTSTSLKYICKDGPVFTYFDIVSTPGLLD 292
>pir||S48834 cytochrome-c3 hydrogenase (EC 1.12.2.1) gamma chain - Pyrococcus
furiosus
Length = 292
Score = 591 bits (1506), Expect = e-168
Identities = 278/292 (95%), Positives = 285/292 (97%)
Query: 1 MTLPKEVMMPNDNPYALHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTI 60
M LPKE+MMPNDNPYALHRVKVLKVY LTE EKLFLFRFEDP+LAE WTFKPGQFVQLTI
Sbjct: 1 MMLPKEIMMPNDNPYALHRVKVLKVYSLTETEKLFLFRFEDPELAEKWTFKPGQFVQLTI 60
Query: 61 PGVGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEG 120
PGVGEVPISICSSPMRKGFFELCIR+AGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEG
Sbjct: 61 PGVGEVPISICSSPMRKGFFELCIRKAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEG 120
Query: 121 MDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAE 180
MDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAE
Sbjct: 121 MDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAE 180
Query: 181 NVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRP 240
NVKIIQSVTRDP+WPGL GRPQQFIVEANTNPKNTAVAICGPPRMYK+VFE+LINYGYRP
Sbjct: 181 NVKIIQSVTRDPNWPGLKGRPQQFIVEANTNPKNTAVAICGPPRMYKSVFEALINYGYRP 240
Query: 241 ENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTYFDIVSTPGLLD 292
ENI+VTLERRMKCGIGKCGHC GTSTSWKYICKDGPVFTYFDIVSTPGLLD
Sbjct: 241 ENIFVTLERRMKCGIGKCGHCNVGTSTSWKYICKDGPVFTYFDIVSTPGLLD 292
>emb|CAA53035.1| (X75255) hydrogenase (gamma subunit) [Pyrococcus furiosus]
Length = 291
Score = 589 bits (1502), Expect = e-167
Identities = 277/290 (95%), Positives = 284/290 (97%)
Query: 3 LPKEVMMPNDNPYALHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTIPG 62
LPKE+MMPNDNPYALHRVKVLKVY LTE EKLFLFRFEDP+LAE WTFKPGQFVQLTIPG
Sbjct: 2 LPKEIMMPNDNPYALHRVKVLKVYSLTETEKLFLFRFEDPELAEKWTFKPGQFVQLTIPG 61
Query: 63 VGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMD 122
VGEVPISICSSPMRKGFFELCIR+AGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMD
Sbjct: 62 VGEVPISICSSPMRKGFFELCIRKAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMD 121
Query: 123 LLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAENV 182
LLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAENV
Sbjct: 122 LLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAENV 181
Query: 183 KIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRPEN 242
KIIQSVTRDP+WPGL GRPQQFIVEANTNPKNTAVAICGPPRMYK+VFE+LINYGYRPEN
Sbjct: 182 KIIQSVTRDPNWPGLKGRPQQFIVEANTNPKNTAVAICGPPRMYKSVFEALINYGYRPEN 241
Query: 243 IYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTYFDIVSTPGLLD 292
I+VTLERRMKCGIGKCGHC GTSTSWKYICKDGPVFTYFDIVSTPGLLD
Sbjct: 242 IFVTLERRMKCGIGKCGHCNVGTSTSWKYICKDGPVFTYFDIVSTPGLLD 291
>gb|AAB94934.1| (AF039208) NiFe hydrogenase gamma subunit [Thermococcus litoralis]
Length = 296
Score = 561 bits (1431), Expect = e-159
Identities = 264/296 (89%), Positives = 277/296 (93%), Gaps = 4/296 (1%)
Query: 1 MTLPKEVMMPN----DNPYALHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFV 56
MT+P+ V N DNPYAL RV+VL+VY LTE EKLFLFRFEDP +AE WTFKPGQFV
Sbjct: 1 MTVPRPVPRTNTFADDNPYALERVRVLRVYQLTELEKLFLFRFEDPTIAENWTFKPGQFV 60
Query: 57 QLTIPGVGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVD 116
QLTIPG+GEVPIS+CSSPMR+GFFELCIR+AGRVTTVVH+LKPGDTVLVRGPYGNGFPVD
Sbjct: 61 QLTIPGIGEVPISVCSSPMRQGFFELCIRKAGRVTTVVHKLKPGDTVLVRGPYGNGFPVD 120
Query: 117 EWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDL 176
EWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKD+
Sbjct: 121 EWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDI 180
Query: 177 AEAENVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINY 236
AEAENVKIIQSVTRDPDWPGL GRPQ FIVEANTNPKNTAVAICGPPRMYK VFESLINY
Sbjct: 181 AEAENVKIIQSVTRDPDWPGLKGRPQNFIVEANTNPKNTAVAICGPPRMYKDVFESLINY 240
Query: 237 GYRPENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTYFDIVSTPGLLD 292
GYRPENIYVTLER MKCGIGKCGHC GTSTSWKY+CKDGPVFTYFDIVSTPG+LD
Sbjct: 241 GYRPENIYVTLERMMKCGIGKCGHCNVGTSTSWKYVCKDGPVFTYFDIVSTPGMLD 296
>gb|AAF61852.1|AF176650_2 (AF176650) sulfhydrogenase II subunit g [Pyrococcus furiosus]
Length = 288
Score = 257 bits (651), Expect = 8e-68
Identities = 141/296 (47%), Positives = 184/296 (61%), Gaps = 26/296 (8%)
Query: 13 NPYALHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTIPGVGEVPISICS 72
NPY + ++++V +LT REKLF +F D ++ E +TFKPGQFV + I G GE PIS+CS
Sbjct: 2 NPYRSYDARIIEVKELTSREKLFSLKFLDNEIEENFTFKPGQFVIVDIRGFGEFPISLCS 61
Query: 73 SPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGT 132
SP R+ +LCIRR GR+T +H++ GD + +RGPYGNGFP+D EG +L+LIA GLG
Sbjct: 62 SPTRRPI-QLCIRRVGRMTKFIHKMNEGDIIGIRGPYGNGFPMDLMEGSNLILIAGGLGM 120
Query: 133 APLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAEN--VKIIQSVTR 190
APLRSV YA+D+ KY I + +D+LF E+ + E N VK+ V
Sbjct: 121 APLRSVLWYAIDSG-KYEKIYLFYGTKSYEDILFRDEIIHLLKHGEKLNCHVKLAYEV-E 178
Query: 191 DPDWPGLHG---------------RPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLIN 235
P L R ++F VE N+ ICGPP MYK V L++
Sbjct: 179 TPSCIYLERGFSEKVCKGVVTDLFRGEEFDVE------NSYALICGPPVMYKYVIRELLD 232
Query: 236 YGYRPENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTYFDIVSTPGLL 291
G P IY+TLERRM+CG+GKCGHC+ GTS S KYICKDGPVFTY+D +ST GL+
Sbjct: 233 RGLSPGRIYMTLERRMRCGVGKCGHCIVGTSVSIKYICKDGPVFTYWDALSTRGLI 288
>pir||H75069 cytochrome-c3 hydrogenase, chain gamma PAB0639 - Pyrococcus abyssi
(strain Orsay) >gi|5458373|emb|CAB49861.1| (AJ248286)
cytochrome-c3 hydrogenase, subunit gamma [Pyrococcus
abyssi]
Length = 288
Score = 257 bits (649), Expect = 1e-67
Identities = 136/290 (46%), Positives = 185/290 (62%), Gaps = 14/290 (4%)
Query: 13 NPYALHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTIPGVGEVPISICS 72
NPY + ++++V +LT REKLF +F DP++ E++TFKPGQFV + I G GE PIS+CS
Sbjct: 2 NPYQSYDARIIEVRELTPREKLFSLKFLDPEVEESFTFKPGQFVIVDIRGHGEFPISLCS 61
Query: 73 SPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGT 132
SP RK +LCIRR GR+T ++H+ GD + VRGPYGNGFP+++ EG L+L+A GLG
Sbjct: 62 SPTRKPI-QLCIRRVGRLTRLIHKFSEGDVIGVRGPYGNGFPLEKMEGATLILVAGGLGM 120
Query: 133 APLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAEN--VKIIQSVTR 190
APLRSV YA+D+ K+ I + +D+LF E+ + E N VK+ V
Sbjct: 121 APLRSVLWYAIDSG-KFEKIYLYYGTKSYEDILFRDEIIYLLKHGEKLNCHVKLAYEV-E 178
Query: 191 DPDWPGLH---------GRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRPE 241
P L G + + +N+ ICGPP MYK V + L++ G P
Sbjct: 179 TPSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSYALICGPPVMYKFVIKELLDKGLSPG 238
Query: 242 NIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTYFDIVSTPGLL 291
IY+TLERRM+CG+GKCGHC+ GTS S KYIC+DGPVF+Y+D +ST GL+
Sbjct: 239 RIYMTLERRMRCGVGKCGHCIVGTSVSIKYICRDGPVFSYWDALSTRGLI 288
>sp|P26475|ASRB_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT B >gi|96706|pir||B38453
anaerobic sulfite reduction protein B - Salmonella
typhimurium >gi|153883|gb|AAA99276.1| (M57706) anaerobic
sulfite reductase [Salmonella typhimurium]
Length = 272
Score = 143 bits (356), Expect = 3e-33
Identities = 85/230 (36%), Positives = 122/230 (52%), Gaps = 11/230 (4%)
Query: 53 GQFVQLTIPGVGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNG 112
GQFV++++P VGE PIS+ S G+ +L IR G+VT+ + LK GD V +RG YGNG
Sbjct: 45 GQFVEVSLPRVGEAPISV--SDYGDGWIDLLIRNVGKVTSALFTLKEGDNVWLRGCYGNG 102
Query: 113 FPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEA 172
+PVD LL++A G G AP++ + Y ++N + G + I +D + YK E
Sbjct: 103 YPVDTLRHKPLLVVAGGTGVAPVKGLMRYFVENPQEIGQLDMI-LGYKNRDCVLYK--EE 159
Query: 173 MKDLAEAENVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAI-CGPPRMYKAVFE 231
M N+ + D + GR + + + +T AI GPP M +
Sbjct: 160 MATWRGKHNLVLTLDEGEADDRYQI-GRVTDRLADMTLSDIDTMQAIVVGPPIMITFTVK 218
Query: 232 SLINYGYRPENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTY 281
L+ G +PE I+V ERRM C +GKCGHC G Y+C DGP+F Y
Sbjct: 219 MLLQKGLKPEQIWVDYERRMACSVGKCGHCRMGE----VYVCTDGPIFNY 264
>emb|CAC11195.1| (AL445063) anaerobic sulfite reduction protein B related protein
[Thermoplasma acidophilum]
Length = 244
Score = 132 bits (330), Expect = 4e-30
Identities = 88/241 (36%), Positives = 129/241 (53%), Gaps = 21/241 (8%)
Query: 53 GQFVQLTIPGVGEVPISICSSPMRKGFFELCIRRAGRVTTVV--HRLKPGDTVLVRGPYG 110
GQF +++ GVGE PIS+ S F I+ G VT + HR + +RGPYG
Sbjct: 20 GQFYMVSVDGVGESPISVASGYGNPLTFS--IKAVGSVTRYIMDHR---DIEIGLRGPYG 74
Query: 111 NGFPVDEWEGMD-LLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKE 169
N +P W+G D ++ IA G+G P++++ + M++ ++T + AR D+++ E
Sbjct: 75 NEWP---WKGADHIVAIAGGIGIPPIKAL-IEDMESEGNLDDLTVLYGARSPGDIVYKNE 130
Query: 170 LEAMKDLAEAENVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKAV 229
+EA K + + I + D W G G I A I GPP M K
Sbjct: 131 IEAWKKKLDLQ----ITVDSGDASWNGHVGVVTTLIPGVKKFNGGRAFVI-GPPIMMKFS 185
Query: 230 FESLINYGYRPENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFTYFDIVSTPG 289
+ LI G+RPENIY++LERRM+CGIG CGHC G W Y+C+ GP+F Y D+++ P
Sbjct: 186 VQELIKQGFRPENIYLSLERRMECGIGVCGHCNLG---QW-YVCEAGPIFRYSDVMNEPE 241
Query: 290 L 290
L
Sbjct: 242 L 242
>sp|O57738|PYRK_PYRHO PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
Length = 247
Score = 113 bits (279), Expect = 3e-24
Identities = 90/264 (34%), Positives = 129/264 (48%), Gaps = 42/264 (15%)
Query: 17 LHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTIPGVGEVPISICSSPMR 76
L RV + + +++ + K F F D KL F PGQF+ + +PGV E P S+ +
Sbjct: 2 LRRVTLKETWEVAKNIKAFRF---DEKL----DFTPGQFIMVWLPGVNEKPFSLADKDL- 53
Query: 77 KGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLR 136
+ ++R G T+ + L+ GD + +RGPYGNGF E +G + L+A G+G P
Sbjct: 54 -----IVVKRVGPFTSKLFTLEEGDYLWIRGPYGNGF--KEVKG-KVALVAGGIGIPP-- 103
Query: 137 SVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTRDPDWPG 196
+YA+ K I AR GKD L ++E D +I+ +T D G
Sbjct: 104 ---IYALAKHGKLEEKVLIYGAR-GKDELALLDIENYVD-------EIV--ITTDDGSYG 150
Query: 197 LHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRPENIYVTLERRMKCGIG 256
+ G P V A + + V CGP M V E ++NY E ++ ER MKCGIG
Sbjct: 151 IKGFPTD--VLAKRKEEFSQVYACGPEIMLAKVLE-IMNY----ERTQISAERYMKCGIG 203
Query: 257 KCGHCVAGTSTSWKYICKDGPVFT 280
CG C G +C+DGPVFT
Sbjct: 204 ICGSCALGP----YLVCRDGPVFT 223
>sp|Q9UXV5|PYRK_PYRAB PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451842|pir||D75027 dihydroorotate dehydrogenase
electron transfer chain PAB1150 - Pyrococcus abyssi
(strain Orsay) >gi|5459172|emb|CAB50658.1| (AJ248288)
DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
[Pyrococcus abyssi]
Length = 247
Score = 112 bits (278), Expect = 5e-24
Identities = 85/264 (32%), Positives = 127/264 (47%), Gaps = 42/264 (15%)
Query: 17 LHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTIPGVGEVPISICSSPMR 76
L RV + + +++ + + F F D KL F PGQF+ L +PG+ E P S+ +
Sbjct: 2 LRRVMIKETWEVAKNVRAFRF---DEKL----DFIPGQFIMLWLPGINEKPFSLADKDL- 53
Query: 77 KGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLR 136
+ +++ G T+ + +L+ GD V +RGPYGNGF E + + L+A G+G P
Sbjct: 54 -----IVVKKVGPFTSKLFKLEEGDYVWIRGPYGNGFKSVEGK---VALVAGGIGIPP-- 103
Query: 137 SVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTRDPDWPG 196
+YA+ KYGN+ K L++ + + EN +T D G
Sbjct: 104 ---IYALA---KYGNLE-------EKVLIYGARSKEELATLDIENYVDEVVITTDDGSAG 150
Query: 197 LHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRPENIYVTLERRMKCGIG 256
+ G P V A + + V CGP M V E ++NY E ++ ER MKCGIG
Sbjct: 151 IKGFPTD--VLARRKVEFSQVYACGPEVMLAKVLE-IMNY----ERTQISAERYMKCGIG 203
Query: 257 KCGHCVAGTSTSWKYICKDGPVFT 280
CG C G +C+DGPVFT
Sbjct: 204 ICGSCALGP----YLVCRDGPVFT 223
>sp|Q58841|PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|2127836|pir||E64480 cytochrome-c3 hydrogenase gamma
chain homolog - Methanococcus jannaschii
>gi|1592091|gb|AAB99455.1| (U67585) cytochrome-c3
hydrogenase, gamma chain [Methanococcus jannaschii]
Length = 257
Score = 108 bits (268), Expect = 7e-23
Identities = 85/231 (36%), Positives = 108/231 (45%), Gaps = 29/231 (12%)
Query: 50 FKPGQFVQLTIPGVGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPY 109
FKPGQF L +PGV E P S K F + R G T +H LK GD + VRGPY
Sbjct: 30 FKPGQFAMLWLPGVDEKPFGFSS----KNSFS--VARVGEFTKKMHELKEGDIIGVRGPY 83
Query: 110 GNGFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYG-NITFINTARYGKDLLFYK 168
G F E G +L +A G+G AP+ + A++ K G IT I AR ++LLF
Sbjct: 84 GTYF---EPIGDKVLAVAGGIGAAPI----ITAVEEFSKQGIEITTILGARTKEELLF-- 134
Query: 169 ELEAMKDLAEAENVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKA 228
L E V ++ T D + G G + + E K + CGP M K
Sbjct: 135 -------LDRFEKVSRLEICTDDGSF-GFKGFTTEKMKEVLKEEKFDLIITCGPEIMMKK 186
Query: 229 VFESLINYGYRPENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVF 279
V E Y + V++ER MKCGIG CG C +CKDGPVF
Sbjct: 187 VVEIANEYNI---PVQVSMERYMKCGIGICGQCC--VDDEGLCVCKDGPVF 232
>sp|P46536|PYRK_BACCL DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|2126771|pir||I40170 hypothetical protein 2 -
Bacillus caldolyticus >gi|312444|emb|CAA51740.1|
(X73308) ORF2 [Bacillus caldolyticus]
Length = 257
Score = 102 bits (251), Expect = 7e-21
Identities = 79/243 (32%), Positives = 119/243 (48%), Gaps = 28/243 (11%)
Query: 51 KPGQFVQLTIPGVGEV----PISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVR 106
+PGQFV + + + P+S+C ++G + R+ G+ T ++ + +PGDTV V
Sbjct: 34 QPGQFVHVKVAASADPLLRRPLSLCHIDHKQGQCTIIYRQEGKGTALLAQKQPGDTVDVL 93
Query: 107 GPYGNGFPVDEW-EGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLL 165
GP GNGFP++ G LL+ G+G PL + K ++ T K +
Sbjct: 94 GPLGNGFPLEAAPAGSRALLVGGGIGVPPLYELAKQLTKRGVKVVSVLGFQT----KAAV 149
Query: 166 FYKELEAMKDLAEAENVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRM 225
FY+E A A E V D G GR ++EA + + A CGP M
Sbjct: 150 FYEEEFA----AFGET-----HVATDDGSHGTAGRVTD-VIEARSLEFDVLYA-CGPKPM 198
Query: 226 YKAVFESLINYGYRPENIYVTLERRMKCGIGKCGHCVA---GTSTSWKYICKDGPVFTYF 282
+A+ E N RP +Y++LE RM CG+G C CV G+ T++K +C DGPVF
Sbjct: 199 LRALAERFPN---RP--VYLSLEERMGCGVGACFACVCHVPGSETAYKKVCSDGPVFRAG 253
Query: 283 DIV 285
++V
Sbjct: 254 EVV 256
>pir||E71212 hypothetical protein PH1965 - Pyrococcus horikoshii
>gi|3258409|dbj|BAA31092.1| (AP000007) 213aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 213
Score = 96.0 bits (235), Expect = 5e-19
Identities = 76/221 (34%), Positives = 107/221 (48%), Gaps = 35/221 (15%)
Query: 60 IPGVGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWE 119
+PGV E P S+ + + ++R G T+ + L+ GD + +RGPYGNGF E +
Sbjct: 4 LPGVNEKPFSLADKDL------IVVKRVGPFTSKLFTLEEGDYLWIRGPYGNGF--KEVK 55
Query: 120 GMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEA 179
G + L+A G+G P +YA+ K I AR GKD L ++E D
Sbjct: 56 G-KVALVAGGIGIPP-----IYALAKHGKLEEKVLIYGAR-GKDELALLDIENYVD---- 104
Query: 180 ENVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYR 239
+I+ +T D G+ G P V A + + V CGP M V E ++NY
Sbjct: 105 ---EIV--ITTDDGSYGIKGFPTD--VLAKRKEEFSQVYACGPEIMLAKVLE-IMNY--- 153
Query: 240 PENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVFT 280
E ++ ER MKCGIG CG C G +C+DGPVFT
Sbjct: 154 -ERTQISAERYMKCGIGICGSCALGP----YLVCRDGPVFT 189
>sp|O27280|PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451852|pir||H69028 cytochrome-c3 hydrogenase, gamma
subunit - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622322|gb|AAB85701.1| (AE000889)
cytochrome-c3 hydrogenase, gamma subunit
[Methanobacterium thermoautotrophicum]
Length = 266
Score = 93.6 bits (229), Expect = 3e-18
Identities = 80/264 (30%), Positives = 122/264 (45%), Gaps = 36/264 (13%)
Query: 20 VKVLKVYDLTEREKLFLFRFEDPKLAETWTFK----PGQFVQLTIPGVGEVPISICSSPM 75
+++ ++ + +E K F+F +W F+ PGQFV + E P+S+
Sbjct: 10 LEIKRIVEESESVKTFIF---------SWDFRREVRPGQFVMVW-DFRDEKPMSVSLIDP 59
Query: 76 RKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGTAPL 135
+ + IRR G T VH L GD + +RGPYG GF E G D+LL+ G+G APL
Sbjct: 60 VRSEIGISIRRVGEFTDRVHGLSEGDLLGIRGPYGRGF---ELMGRDILLVGGGIGMAPL 116
Query: 136 RSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTRDPDWP 195
++ A + + + + AR +LLF D EA V I S D
Sbjct: 117 AAL---ADEATARGMRVDALVAARTADELLFL-------DRLEAAGVNI--STCTDDGSC 164
Query: 196 GLHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRPENIYVTLERRMKCGI 255
G G + ++ N + A+CGP M +F+ + R ++LER MKC +
Sbjct: 165 GFKGFAHERLLTLEEN--HDMAAVCGPEPM---MFQVMRILDERDVPAQLSLERYMKCAV 219
Query: 256 GKCGHCVAGTSTSWKYICKDGPVF 279
G CG C T ++ +C +GPVF
Sbjct: 220 GICGQCCL-DDTGFR-VCAEGPVF 241
>sp|P25983|PYRK_BACSU DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|98369|pir||G39845 dihydroorotate dehydrogenase
(electron transfer subunit) pyrDII - Bacillus subtilis
>gi|143391|gb|AAA21271.1| (M59757) unknown [Bacillus
subtilis] >gi|2633926|emb|CAB13427.1| (Z99112)
dihydroorotate dehydrogenase (electron transfer subunit)
[Bacillus subtilis]
Length = 256
Score = 84.3 bits (205), Expect = 2e-15
Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 32/238 (13%)
Query: 52 PGQFVQL----TIPGVGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRG 107
PGQF+ L + + PISI K + R G T ++ + G+ V V G
Sbjct: 34 PGQFLHLKVSEAVTPLLRRPISIADVNFEKNEVTIIYRVDGEGTRLLSLKQQGELVDVLG 93
Query: 108 PYGNGFPVDEWE-GMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLF 166
P GNGFPV+E + G LL+ G+G PL+ + ++ K N+ + + KD+ +
Sbjct: 94 PLGNGFPVNEVQPGKTALLVGGGVGVPPLQELSKRLIE---KGVNVIHVLGFQSAKDVFY 150
Query: 167 YKELEAMKDLAEAENVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPK--NTAVAICGPPR 224
+E D A T D G +G F+ + K + CGP
Sbjct: 151 EEECRQYGDTYVA---------TAD----GSYGE-TGFVTDVIKRKKLEFDILLSCGPTP 196
Query: 225 MYKAVFESLINYGYRPENIYVTLERRMKCGIGKCGHCVAGTS---TSWKYICKDGPVF 279
M KA+ + Y + +Y+++E RM CGIG C CV T+ TS+ +C DGPVF
Sbjct: 197 MLKALKQE-----YAHKEVYLSMEERMGCGIGACFACVCHTNESETSYVKVCLDGPVF 249
>gi|11498139 cytochrome-c3 hydrogenase, subunit gamma [Archaeoglobus fulgidus]
>gi|9297031|sp|O29722|PYRK_ARCFU PROBABLE DIHYDROOROTATE
DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451846|pir||H69315 cytochrome-c3 hydrogenase,
subunit gamma homolog - Archaeoglobus fulgidus
>gi|2650096|gb|AAB90709.1| (AE001068) cytochrome-c3
hydrogenase, subunit gamma [Archaeoglobus fulgidus]
Length = 232
Score = 80.8 bits (196), Expect = 2e-14
Identities = 63/229 (27%), Positives = 106/229 (45%), Gaps = 33/229 (14%)
Query: 52 PGQFVQLTIPGVGEVPISICSSPMRKGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGN 111
PGQFV + +PG E+P+S+ SS + ++ G T + K G V VRG +G+
Sbjct: 29 PGQFVMVYVPGCEEIPLSLSSSN------SVTVKAVGETTASLINAKEGQYVGVRGAFGS 82
Query: 112 GFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGN-ITFINTARYGKDLLFYKEL 170
F + L++A G+G AP++ ++ Y M K G+ ++ + R K+L + +
Sbjct: 83 AFTPSK----RALIVAGGIGIAPMKYLYEYLM----KCGSKVSVVYGERTAKNLFWLDKF 134
Query: 171 EAMKDLAEAENVKIIQSVTRDPDWPGLHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVF 230
+ + +VT + GL G + + + + +CG M +A +
Sbjct: 135 DRI-------------TVTTEDGSFGLKGTVLDAL-KLEKLDEYEKIYVCGSEGMLRATY 180
Query: 231 ESLINYGYRPENIYVTLERRMKCGIGKCGHCVAGTSTSWKYICKDGPVF 279
+ L + + +LER M+CGIG CG CV +C DGPVF
Sbjct: 181 DFLKERDALDKAEF-SLERYMRCGIGVCGSCVIENGLR---VCADGPVF 225
>pir||S44308 phenol 2-monooxygenase (EC 1.14.13.7) reductase component -
Pseudomonas putida >gi|483483|emb|CAA55665.1| (X79063)
phenol hydroxylase [Pseudomonas putida]
>gi|1093591|prf||2104263F catechol dioxygenase
[Pseudomonas putida]
Length = 353
Score = 75.7 bits (183), Expect = 6e-13
Identities = 65/204 (31%), Positives = 94/204 (45%), Gaps = 20/204 (9%)
Query: 43 KLAETWTFKPGQFVQLTIPGV-GEVPISICSSPMRKGFFELCIR--RAGRVTTVVHR-LK 98
KL TF+ GQ++ LT+PGV G S+ + P + EL IR G T+ +HR LK
Sbjct: 125 KLDRPMTFQAGQYINLTLPGVEGSRAFSLANPPSQADEVELHIRLVEGGAATSFIHRQLK 184
Query: 99 PGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTA 158
GD V + GPYG F D G DL+ IA G G + +S+ ++ + R IT A
Sbjct: 185 VGDAVELSGPYGQFFVRDSQAG-DLIFIAGGSGLSSPQSM-IFDLFERGDTRQITLFQGA 242
Query: 159 RYGKDLL---FYKELEAMKDLAEAENVKIIQSVTRDPDWPGLHGRPQQFIVEA-----NT 210
R +L ++EL A + V + DP+W G G F+ +A +
Sbjct: 243 RNRAELYNRELFEELAARH--SNFSYVPALNQAHDDPEWQGFKG----FVHDAAKAHFDG 296
Query: 211 NPKNTAVAICGPPRMYKAVFESLI 234
+CGPP M A +L+
Sbjct: 297 RFSGHKAYLCGPPPMIDAAITTLM 320
>pir||G82970 probable ferredoxin PA5411 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951737|gb|AAG08796.1|AE004953_10
(AE004953) probable ferredoxin [Pseudomonas aeruginosa]
Length = 366
Score = 73.0 bits (176), Expect = 4e-12
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 21/233 (9%)
Query: 18 HRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTIPGVGEVPI---SICSSP 74
H V+ +KV T + F F + P L + FKPGQFV L + GE + +I SSP
Sbjct: 19 HLVRCVKVIQETWDVRTFCFMADQPIL---FFFKPGQFVTLELEIDGEPVMRSYTISSSP 75
Query: 75 MRKGFFELCIRRA--GRVTTVVH-RLKPGDTVLVRGPYGN----GFPVDEWEGMDLLLIA 127
F + I+R GRV+ +H LK G + V GP G FP D+ +L ++
Sbjct: 76 SVPYSFSITIKRVPGGRVSNWLHDNLKEGQELPVHGPVGLFNAIDFPADK-----VLFLS 130
Query: 128 AGLGTAPLRSVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAENVKII-Q 186
G+G P+ S+ + D ++ F+++AR KD+++++ELE M + ++ II +
Sbjct: 131 GGVGITPVMSMARWFFDTNANV-DMVFVHSARSPKDIIYHRELEHMASRIDNFSLHIICE 189
Query: 187 SVTRDPDWPGLHGRPQQFIVE-ANTNPKNTAVAICGPPRMYKAVFESLINYGY 238
W G G ++E + + CGP AV L +GY
Sbjct: 190 RHGLGEAWAGYRGYLNLRMLELIAPDFLEREIFCCGPTPYMSAVKHLLQGHGY 242
>dbj|BAA06019.1| (D28864) one component of phenol hydroxylase [Pseudomonas putida]
Length = 353
Score = 71.0 bits (171), Expect = 2e-11
Identities = 63/204 (30%), Positives = 90/204 (43%), Gaps = 20/204 (9%)
Query: 43 KLAETWTFKPGQFVQLTIPGV-GEVPISICSSPMRKGFFELCIR--RAGRVTTVVHR-LK 98
KL F+ GQ+V L +PG+ G S+ + P R EL +R G T +H+ LK
Sbjct: 125 KLDRPMPFQAGQYVNLALPGIDGTRAFSLANPPSRNDEVELHVRLVEGGAATGFIHKQLK 184
Query: 99 PGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTA 158
GD V + GPYG F D G DL+ IA G G + +S+ L ++ R IT A
Sbjct: 185 VGDAVELSGPYGQFFVRDSQAG-DLIFIAGGSGLSSPQSMILNLLE-RGDTRRITLFQGA 242
Query: 159 RYGKDLL---FYKELEAMKDLAEAENVKIIQSVTRDPDWPGLHGRPQQFIVEA-----NT 210
R +L ++EL A V + DP+W G G F+ +A +
Sbjct: 243 RNRAELYNCELFEELAARH--PNFSYVPALNQANDDPEWQGFKG----FVHDAAKAHFDG 296
Query: 211 NPKNTAVAICGPPRMYKAVFESLI 234
+CGPP M A +L+
Sbjct: 297 RFGGQKAYLCGPPPMIDAAITTLM 320
>sp|Q9X1X4|PYRK_THEMA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451851|pir||G72230 hypothetical protein TM1639 -
Thermotoga maritima (strain MSB8)
>gi|4982212|gb|AAD36706.1|AE001806_16 (AE001806)
electron transfer protein, putative [Thermotoga
maritima]
Length = 282
Score = 71.0 bits (171), Expect = 2e-11
Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 22/250 (8%)
Query: 32 EKLFLFRFEDPKLAETWTFKPGQFVQLTIPGVGE-VPISICSSPMRKGFFELCIRRAGRV 90
E +F F P +++ +PGQFV + + GE +P+++ + +G F + ++ G+
Sbjct: 17 EDVFDFWIHSPSVSKE--ARPGQFVVIRLHEKGERIPLTVADTKPEEGLFRMVVKVVGKT 74
Query: 91 TTVVHRLKPGDTVL-VRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKY 149
T + K GDT+L V GP GN ++ + ++LL+ G+G A L + A +
Sbjct: 75 THELSLKKEGDTILDVVGPLGNPSEIENYG--NVLLVGGGVGIATLYPI---AKALKEAG 129
Query: 150 GNITFINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTRDPDWPGLHGRPQQFIVEAN 209
NIT + AR L+ E + + D+ + D G+ G + +
Sbjct: 130 NNITTVLGARTKDYLIMVDEFKEISDVL----------LVTDDGSAGMKGVVTDAMDKLF 179
Query: 210 TNPKNTAVAICGPPRMYKAVFESLINYGYRPENIYVTLERRMKCGIGKCGHCVAGTSTSW 269
K GP M K +G I+V+L M G G CG C S
Sbjct: 180 RERKFDICWAVGPTIMMKFCTLKAREFGVP---IWVSLNPIMVDGTGMCGACRVTVSGQI 236
Query: 270 KYICKDGPVF 279
K+ C DGP F
Sbjct: 237 KFACVDGPEF 246
>sp|P19734|DMPP_PSESP PHENOL HYDROXYLASE P5 PROTEIN (PHENOL 2-MONOOXYGENASE P5 COMPONENT)
>gi|94993|pir||F37831 phenol 2-monooxygenase (EC
1.14.13.7) chain P5 - Pseudomonas sp. (strain CF600)
>gi|151455|gb|AAA25944.1| (M60276) phenol hydroxylase
[Pseudomonas putida]
Length = 353
Score = 70.6 bits (170), Expect = 2e-11
Identities = 63/204 (30%), Positives = 90/204 (43%), Gaps = 20/204 (9%)
Query: 43 KLAETWTFKPGQFVQLTIPGV-GEVPISICSSPMRKGFFELCIR--RAGRVTTVVHR-LK 98
KL F+ GQ+V L +PG+ G S+ + P R EL +R G T +H+ LK
Sbjct: 125 KLDRPMPFQAGQYVNLALPGIDGTRAFSLANPPSRNDEVELHVRLVEGGAATGFIHKQLK 184
Query: 99 PGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLRSVFLYAMDNRWKYGNITFINTA 158
GD V + GPYG F D G DL+ IA G G + +S+ L ++ R IT A
Sbjct: 185 VGDAVELSGPYGQFFVRDSQAG-DLIFIAGGSGLSSPQSMILDLLE-RGDTRRITLFQGA 242
Query: 159 RYGKDLL---FYKELEAMKDLAEAENVKIIQSVTRDPDWPGLHGRPQQFIVEA-----NT 210
R +L ++EL A V + DP+W G G F+ +A +
Sbjct: 243 RNRAELYNCELFEELAARH--PNFSYVPALNQANDDPEWQGFKG----FVHDAAKAHFDG 296
Query: 211 NPKNTAVAICGPPRMYKAVFESLI 234
+CGPP M A +L+
Sbjct: 297 RFGGQKAYLCGPPPMIDAAITTLM 320
>pir||S47419 phenolhydroxylase chain F - Pseudomonas putida
>gi|527552|emb|CAA56745.1| (X80765) subunit of
phenolhydroxylase [Pseudomonas putida]
Length = 353
Score = 69.1 bits (166), Expect = 6e-11
Identities = 67/207 (32%), Positives = 92/207 (44%), Gaps = 26/207 (12%)
Query: 43 KLAETWTFKPGQFVQLTIPGV-GEVPISICSSPMRKGFFELCIR--RAGRVTTVVHR-LK 98
KL TF+ GQ++ LT+PG+ G S+ + P + EL IR G T +HR LK
Sbjct: 125 KLDRPMTFQAGQYINLTLPGIEGSRAFSLANPPSQADEVELHIRLVEGGAATGFIHRQLK 184
Query: 99 PGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLG-TAPLRSVF--LYAMDNRWKYGNITFI 155
GD V + GPYG F G DL+ IA G G ++P VF L D R IT
Sbjct: 185 VGDAVELSGPYGQFFVRGSQAG-DLIFIAGGSGLSSPQSMVFDLLAQGDTR----QITLF 239
Query: 156 NTARYGKDLL---FYKELEAMKDLAEAENVKIIQSVTRDPDWPGLHGRPQQFIVEA---- 208
AR +L ++EL A + V + DP+W G G F+ +A
Sbjct: 240 QGARNRAELYNRELFEELAARH--SNFSYVPALNQAHDDPEWQGFKG----FVHDAAKAH 293
Query: 209 -NTNPKNTAVAICGPPRMYKAVFESLI 234
+ +CGPP M A +L+
Sbjct: 294 FDGRFSGHKAYLCGPPPMIDAAITTLM 320
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.448
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121226458
Number of Sequences: 2977
Number of extensions: 5231133
Number of successful extensions: 11008
Number of sequences better than 1.0e-10: 23
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 10958
Number of HSP's gapped (non-prelim): 24
length of query: 292
length of database: 189,106,746
effective HSP length: 50
effective length of query: 242
effective length of database: 159,182,396
effective search space: 38522139832
effective search space used: 38522139832
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)