BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1788 (MOBA-like) DE:molybdopterin-guanine dinucleotide
biosynthesis protein A related
(191 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75132 molybdopterin-guanine dinucleotide biosynthesis prot... 389 e-107
pir||G71089 hypothetical protein PH0980 - Pyrococcus horikoshii ... 311 3e-84
pir||C70423 hypothetical protein aq_1419 - Aquifex aeolicus >gi|... 99 3e-20
gi|11499587 molybdopterin-guanine dinucleotide biosynthesis prot... 76 2e-13
pir||C69659 molybdopterin-guanine dinucleotide biosynthesis mobA... 71 9e-12
>pir||E75132 molybdopterin-guanine dinucleotide biosynthesis protein A related
PAB1788 - Pyrococcus abyssi (strain Orsay)
>gi|5458285|emb|CAB49774.1| (AJ248285)
molybdopterin-guanine dinucleotide biosynthesis protein
A related [Pyrococcus abyssi]
Length = 191
Score = 389 bits (988), Expect = e-107
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MIGAVLAGGKSRRFGEDKLLFEINGKPLVLHTIERLEGCSSIKKVIIVASPQNREAMEEF 60
MIGAVLAGGKSRRFGEDKLLFEINGKPLVLHTIERLEGCSSIKKVIIVASPQNREAMEEF
Sbjct: 1 MIGAVLAGGKSRRFGEDKLLFEINGKPLVLHTIERLEGCSSIKKVIIVASPQNREAMEEF 60
Query: 61 GYEVVVDDLTIGPISGVYSALSLGDAFVVGGDMPSLIPEFIDYIIKQFNNSGKIACVPRW 120
GYEVVVDDLTIGPISGVYSALSLGDAFVVGGDMPSLIPEFIDYIIKQFNNSGKIACVPRW
Sbjct: 61 GYEVVVDDLTIGPISGVYSALSLGDAFVVGGDMPSLIPEFIDYIIKQFNNSGKIACVPRW 120
Query: 121 SNGYLEPLHAAYSKNFRDILEERIEKGLYKLGDAISSAKNVCYIKIEDLPLGWRESFFNV 180
SNGYLEPLHAAYSKNFRDILEERIEKGLYKLGDAISSAKNVCYIKIEDLPLGWRESFFNV
Sbjct: 121 SNGYLEPLHAAYSKNFRDILEERIEKGLYKLGDAISSAKNVCYIKIEDLPLGWRESFFNV 180
Query: 181 NKKEDLHRIMQ 191
NKKEDLHRIMQ
Sbjct: 181 NKKEDLHRIMQ 191
>pir||G71089 hypothetical protein PH0980 - Pyrococcus horikoshii
>gi|3257394|dbj|BAA30077.1| (AP000004) 192aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 192
Score = 311 bits (789), Expect = 3e-84
Identities = 149/189 (78%), Positives = 165/189 (86%)
Query: 1 MIGAVLAGGKSRRFGEDKLLFEINGKPLVLHTIERLEGCSSIKKVIIVASPQNREAMEEF 60
+I AVLAGGKSRRFGEDKLLFEINGKPL+LHTI+RLE C+ IK+V+IVAS N + M EF
Sbjct: 3 LIAAVLAGGKSRRFGEDKLLFEINGKPLILHTIDRLEKCNLIKRVVIVASSHNEKVMREF 62
Query: 61 GYEVVVDDLTIGPISGVYSALSLGDAFVVGGDMPSLIPEFIDYIIKQFNNSGKIACVPRW 120
GYEV+VD+L IGPISG+YSALSLG+ VVGGDMPSLIPEFIDYIIK+FNNS KIACVPRW
Sbjct: 63 GYEVIVDELEIGPISGLYSALSLGEVLVVGGDMPSLIPEFIDYIIKEFNNSRKIACVPRW 122
Query: 121 SNGYLEPLHAAYSKNFRDILEERIEKGLYKLGDAISSAKNVCYIKIEDLPLGWRESFFNV 180
SNGYLEPLHAAYS+ FR+IL ERI KG YKLGDAI NVCYI IE LP+ WRESFFNV
Sbjct: 123 SNGYLEPLHAAYSREFREILGERIRKGKYKLGDAIREIPNVCYISIEKLPVEWRESFFNV 182
Query: 181 NKKEDLHRI 189
N+KEDLH I
Sbjct: 183 NRKEDLHII 191
>pir||C70423 hypothetical protein aq_1419 - Aquifex aeolicus
>gi|2983823|gb|AAC07379.1| (AE000739) putative protein
[Aquifex aeolicus]
Length = 201
Score = 99.5 bits (244), Expect = 3e-20
Identities = 71/190 (37%), Positives = 106/190 (55%), Gaps = 17/190 (8%)
Query: 5 VLAGGKSRRFGEDKLLFEINGKPLVLHTIERLEGCSSIKKVIIVASPQNREAMEEFGYEV 64
VLAGGKS+RFGEDKLL+EI GK ++ E + S K+V IVA ++RE V
Sbjct: 19 VLAGGKSKRFGEDKLLYEIKGKKVIERVYETAK--SVFKEVYIVA--KDREKFSFLNAPV 74
Query: 65 VVDDL-TIGPISGVYSALSLG---DAFVVGGDMPSLIPEFIDYIIKQFNNSGKIACVPRW 120
V+D+ I G+Y+AL + FV+ GD+P + E + Y+++ F +A +
Sbjct: 75 VLDEFEESASIIGLYTALKHAKEENVFVLSGDLPLMKKETVLYVLENFKEPVSVAKTEK- 133
Query: 121 SNGYLEPLHAAYSKNFRDILEERIEKGLYKLGDAISSAKNVCYIKIEDLPLGWRESFFNV 180
L L YSK + +EERI+KG Y++ + K+V Y ++E +P R + N+
Sbjct: 134 ----LHTLVGVYSKKLLEKIEERIKKGDYRIWALL---KDVGYNEVE-IPEELRYTLLNM 185
Query: 181 NKKEDLHRIM 190
N KEDL RI+
Sbjct: 186 NTKEDLKRIL 195
>gi|11499587 molybdopterin-guanine dinucleotide biosynthesis protein A (mobA)
[Archaeoglobus fulgidus] >gi|7483882|pir||D69500
molybdopterin-guanine dinucleotide biosynthesis protein
A (mobA) homolog - Archaeoglobus fulgidus
>gi|2648532|gb|AAB89249.1| (AE000964)
molybdopterin-guanine dinucleotide biosynthesis protein
A (mobA) [Archaeoglobus fulgidus]
Length = 200
Score = 76.5 bits (185), Expect = 2e-13
Identities = 60/190 (31%), Positives = 96/190 (49%), Gaps = 11/190 (5%)
Query: 4 AVLAGGKSRRFGEDKLLFEINGKPLVLHTIERLEGCSSIKKVIIVASPQNREAMEEFGYE 63
AVL GG RR G +K + GK L+ +E+ S + V + + E +
Sbjct: 4 AVLVGGVGRRIGMEKTEVMLCGKKLIEWVLEKY---SPFQTVFVCRDEKQAEKLSSRYEA 60
Query: 64 VVVDDLT--IGPISGVYSALS-LGDAFVVGGDMPSLIPEFIDYIIKQFNNSGKIACVPRW 120
+ DL +G I+G+++AL G V DMP + PE ++++ K+ +G A +P+
Sbjct: 61 EFIWDLHKGVGSIAGIHAALRHFGSCVVAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK- 119
Query: 121 SNGYLEPLHAAYSKNFRDILEERIEKGLYKLGDAISSAKNVCYIKIEDLPLGWRE--SFF 178
+ Y EPL A Y+++ D LE I +G+ K+ + NV Y +E L +E SFF
Sbjct: 120 -HDYPEPLLAYYAESAADELERAILQGIRKILVPLERL-NVVYYPVEKLRKFDKELISFF 177
Query: 179 NVNKKEDLHR 188
N+N +DL R
Sbjct: 178 NINTPDDLKR 187
>pir||C69659 molybdopterin-guanine dinucleotide biosynthesis mobA - Bacillus
subtilis >gi|2633797|emb|CAB13299.1| (Z99111)
molybdopterin-guanine dinucleotide biosynthesis protein
A [Bacillus subtilis] >gi|3282110|gb|AAC24900.1|
(AF012285) MobA [Bacillus subtilis]
Length = 199
Score = 71.0 bits (171), Expect = 9e-12
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 14/190 (7%)
Query: 2 IGAVLAGGKSRRFGEDKLLFEINGKPLVLHTIERLEGCSSIKKVIIVASPQNREAMEEFG 61
+ +LAGG SRRFGE K + G+ L E L ++ +I++ P+ + +E G
Sbjct: 4 VNVLLAGGASRRFGEPKAFVKWKGRMLYECAKEALG-----EQTVIISRPEFIDRFQENG 58
Query: 62 YEVVVDDLT----IGPISGVYSALSL--GDAFVVGGDMPSLIPEFIDYIIKQFNNSGKIA 115
V D +GP++G+Y+A GD + V LI +K+ +G A
Sbjct: 59 ENEVYQDAEPFQGMGPLAGIYTAFKKTDGDLYTVLSCDTPLIQRRTMLELKRLMIAGADA 118
Query: 116 CVPRWSNGYLEPLHAAYSKNFRDILEERIEKGLYKLGDAISSAKNVCYIKIEDLPLGWRE 175
VP S+G ++PL A Y K +L +++ + ++ D + +VCY++ E++ E
Sbjct: 119 VVP-ISDGQVQPLIAIYHKRIMPVLYDQLSEKRLRISDLLGRI-SVCYVQAENIGANPAE 176
Query: 176 SFFNVNKKED 185
F N+N ++D
Sbjct: 177 -FININTRDD 185
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75266184
Number of Sequences: 2977
Number of extensions: 3263749
Number of successful extensions: 6749
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6741
Number of HSP's gapped (non-prelim): 5
length of query: 191
length of database: 189,106,746
effective HSP length: 52
effective length of query: 139
effective length of database: 157,985,422
effective search space: 21959973658
effective search space used: 21959973658
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)