BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1789 (cdc48-2) DE:CELL DIVISION CONTROL PROTEIN 48, AAA
FAMILY (CDC48-2)
(363 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75132 cell division control protein 48, aaa family (cdc48-... 708 0.0
pir||C71073 hypothetical protein PH1278 - Pyrococcus horikoshii ... 633 e-180
gi|11498895 cell division control protein 48, AAA family (cdc48-... 199 4e-50
gb|AAD53310.1|AF177942_1 (AF177942) katanin p60 [Xenopus laevis] 197 2e-49
gi|6754410 katanin p60 (ATPase-containing) subunit A1 [Mus muscu... 196 3e-49
gb|AAF12877.1|AF205377_1 (AF205377) p60 katanin [Chlamydomonas r... 196 3e-49
gi|5901990 katanin p60 subunit A 1 [Homo sapiens] >gi|3283072|gb... 196 3e-49
emb|CAB88114.1| (AL078581) dJ12G14.4 (katanin p60 (ATPase-contai... 196 3e-49
gi|11418569 katanin p60 (ATPase-containing) subunit A 1 [Homo sa... 196 3e-49
gb|AAF52059.1| (AE003603) katanin-60 gene product [Drosophila me... 196 4e-49
gb|AAF34687.1|AF223064_1 (AF223064) putative microtubule severin... 193 3e-48
gb|AAF21247.1|AF048706_1 (AF048706) CAD ATPase; AAA1 [Arabidopsi... 192 5e-48
gb|AAC15706.1| (AF052191) katanin p60 subunit [Strongylocentrotu... 190 1e-47
gb|AAF51955.1| (AE003601) CG1193 gene product [alt 1] [Drosophil... 187 2e-46
gb|AAF51954.1| (AE003601) CG1193 gene product [alt 2] [Drosophil... 187 2e-46
gi|6325431 AAA-type ATPase; Vps4p [Saccharomyces cerevisiae] >gi... 181 1e-44
emb|CAA63364.1| (X92680) allelic to VPS4 [Saccharomyces cerevisiae] 181 1e-44
gb|AAF21428.1|AF165422_1 (AF165422) suppressor of K+ transport g... 180 2e-44
sp|Q07590|SAV_SULAC SAV PROTEIN >gi|1076162|pir||S43859 ATPase -... 179 4e-44
pir||H72692 probable p60 katanin APE0960 - Aeropyrum pernix (str... 179 5e-44
dbj|BAB16447.1| (AP002483) putative AAA-type ATPase [Oryza sativa] 177 1e-43
gb|AAD38581.1|AF145606_1 (AF145606) BcDNA.GH02678 [Drosophila me... 177 1e-43
gb|AAF17203.1|AF112215_1 (AF112215) SKD1 protein [Homo sapiens] 177 2e-43
gi|7019569 vacuolar sorting protein 4 [Homo sapiens] >gi|5732691... 176 2e-43
gi|11430565 similar to vacuolar sorting protein 4 (H. sapiens) [... 176 2e-43
sp|Q09803|SKD1_SCHPO SUPRESSOR PROTEIN OF BEM1/BED5 DOUBLE MUTAN... 176 3e-43
gb|AAD42971.1|AF155740_1 (AF155740) vacuolar sorting protein 4 [... 175 6e-43
gb|AAC73040.1| (AC005824) putative AAA-type ATPase [Arabidopsis ... 175 7e-43
gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus] 174 2e-42
gb|AAF76434.1|AC015445_1 (AC015445) Contains similarity to p60 k... 174 2e-42
gb|AAK40524.1| AAA family ATPase [Sulfolobus solfataricus] 173 2e-42
dbj|BAA87866.1| (AB018433) Pk-cdcA [Pyrococcus kodakaraensis] 173 2e-42
gi|6325183 Yta6p [Saccharomyces cerevisiae] >gi|2133218|pir||S61... 173 3e-42
dbj|BAB01094.1| (AB026649) gene_id:MOJ10.20~unknown protein [Ara... 173 4e-42
pir||D75046 transitional endoplasmic reticulum atpase PAB1478 - ... 172 5e-42
pir||D72613 probable transitional endoplasmic reticulum ATPase A... 172 5e-42
gi|6320887 member of the AAA ATPase family of proteins; Sap1p [S... 171 8e-42
emb|CAB60143.1| (AJ246002) spastin protein orthologue [Mus muscu... 171 1e-41
gi|7662478 spastin [Homo sapiens] >gi|5689503|dbj|BAA83035.1| (A... 170 2e-41
emb|CAB60141.1| (AJ246001) spastin protein [Homo sapiens] >gi|62... 170 2e-41
pir||F75154 cell division control protein 48, aaa family (cdc48-... 169 4e-41
gb|AAC26698.1| (AC004077) putative katanin [Arabidopsis thaliana] 169 4e-41
gb|AAD47570.1|AF134119_1 (AF134119) SKD1 [Mus musculus] 169 5e-41
gi|11425184 suppressor of K+ transport defect 1 [Homo sapiens] >... 168 9e-41
pir||B71196 probable transitional endoplasmic reticulum ATPase -... 168 9e-41
emb|CAC14616.1| (AL449144) probable AAA ATPase [Leishmania major... 168 9e-41
gb|AAF51127.1| (AE003580) CG3326 gene product [Drosophila melano... 168 1e-40
gi|4759108 suppressor of K+ transport defect 1; mouse SKD1 homol... 167 2e-40
gi|6677981 suppressor of K+ transport defect 1 [Mus musculus] >g... 167 2e-40
pir||T03922 hypothetical protein F32D1.1 - Caenorhabditis elegan... 166 5e-40
emb|CAB95999.1| (AL360054) AAA family ATPase with similarity to ... 166 5e-40
pir||H71114 probable cell division control protein (transitional... 164 1e-39
sp|Q58556|YB56_METJA CELL DIVISION CYCLE PROTEIN 48 HOMOLOG MJ11... 164 1e-39
pir||B72479 probable transitional endoplasmic reticulum ATPase A... 163 3e-39
gi|11499681 cell division control protein 48, AAA family (cdc48-... 163 3e-39
dbj|BAB02560.1| (AP000417) contains similarity to unknown protei... 162 4e-39
gb|AAK42565.1| AAA family ATPase [Sulfolobus solfataricus] 162 7e-39
gb|AAK41191.1| AAA family ATPase, p60 katanin [Sulfolobus solfat... 161 1e-38
pir||T01303 hypothetical protein T14P8.7 - Arabidopsis thaliana ... 161 1e-38
sp|P46464|CDCH_HALSA CDCH PROTEIN >gi|629399|pir||S47018 cdcH pr... 160 3e-38
gb|AAG19919.1| (AE005075) cell division cycle protein; Cdc48c [H... 160 3e-38
gb|AAF02877.1|AC009525_11 (AC009525) Unknown protein [Arabidopsi... 159 4e-38
pir||T40781 26S proteinase subunit - fission yeast (Schizosaccha... 158 1e-37
sp|P40328|TBP6_YEAST PROBABLE 26S PROTEASE SUBUNIT YTA6 (TAT-BIN... 157 2e-37
sp|Q58576|PRS1_METJA PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) (2... 157 2e-37
pir||T39584 hypothetical protein SPBC16E9.10c - fission yeast (... 156 3e-37
gi|11545833 fidgetin-like 1 [Homo sapiens] >gi|10434929|dbj|BAB1... 156 3e-37
sp|P54812|TER2_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE H... 156 4e-37
gi|6678559 valosin containing protein; homolog of yeast cdc48 (S... 155 5e-37
pir||VPPG transitional endoplasmic reticulum ATPase - pig >gi|22... 155 5e-37
sp|P46462|TERA_RAT TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TE... 155 5e-37
gi|6005942 valosin-containing protein [Homo sapiens] >gi|1142956... 155 5e-37
pir||T06669 hypothetical protein F6I7.60 - Arabidopsis thaliana ... 155 5e-37
pir||T46437 hypothetical protein DKFZp434K0126.1 - human (fragme... 155 5e-37
sp|P03974|TERA_PIG TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TE... 155 9e-37
dbj|BAB09730.1| (AB015476) 26S proteasome regulatory particle ch... 155 9e-37
pir||G71242 probable 26S proteinase regulatory subunit - Pyrococ... 154 1e-36
gb|AAB40928.2| (U83085) cell division cycle protein 48 [Dictyost... 154 1e-36
pir||H75207 26s proteinase regulatory chain 4 PAB2233 - Pyrococc... 153 2e-36
gi|6320077 microsomal ATPase; Cdc48p [Saccharomyces cerevisiae] ... 153 3e-36
sp|P23787|TERA_XENLA TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (... 153 4e-36
pir||T02901 MSP1 protein homolog T13J8.110 - Arabidopsis thalian... 152 5e-36
gb|AAD20084.1| (AC006836) putative AAA-type ATPase [Arabidopsis ... 152 6e-36
sp|O05209|VAT_THEAC VCP-LIKE ATPASE >gi|7484232|pir||T37458 VCP-... 152 8e-36
gi|11230794 fidgetin-like 1 [Mus musculus] >gi|10442029|gb|AAG17... 152 8e-36
pir||T11652 probable transitional endoplasmic reticulum ATPase -... 151 1e-35
gi|10946660 spermatogenesis associated factor [Mus musculus] >gi... 150 2e-35
gb|AAK40609.1| AAA family ATPase [Sulfolobus solfataricus] 150 2e-35
sp|P34808|MEI1_CAEEL MEIOTIC SPINDLE FORMATION PROTEIN MEI-1 >gi... 150 3e-35
sp|P54609|CC48_ARATH CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|... 150 3e-35
pir||T48355 transitional endoplasmic reticulum ATPase - Arabidop... 150 3e-35
sp|O26824|PRS1_METTH PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HO... 149 4e-35
sp|P54774|CC48_SOYBN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG (VAL... 148 7e-35
sp|P54811|TER1_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE H... 148 7e-35
pir||A69086 cell division control protein Cdc48 - Methanobacteri... 148 7e-35
gb|AAC27447.1| (AF047037) transitional endoplasmic reticulum ATP... 148 7e-35
gi|6322994 Yll034cp [Saccharomyces cerevisiae] >gi|2492526|sp|Q0... 148 9e-35
sp|Q96372|CC48_CAPAN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|... 148 9e-35
dbj|BAB14567.1| (AK023411) unnamed protein product [Homo sapiens] 148 9e-35
pir||S47861 mei-1 protein - Caenorhabditis elegans 148 1e-34
gb|AAD27852.1|AF132553_1 (AF132553) BcDNA.GM02885 [Drosophila me... 148 1e-34
pir||T46169 CDC48-like protein - Arabidopsis thaliana >gi|663074... 148 1e-34
pir||T05873 hypothetical protein T29A15.170 - Arabidopsis thalia... 147 2e-34
gb|AAC02215.1| (AF044488) valosin-containing protein homolog [Tr... 147 2e-34
gi|11499558 26S protease regulatory subunit 4 [Archaeoglobus ful... 146 3e-34
pir||F72504 probable 26S proteinase regulatory subunit APE2012 -... 146 3e-34
emb|CAC12300.1| (AL445066) VAT-2 protein [Thermoplasma acidophilum] 146 3e-34
gb|AAF17568.1|AF202034_1 (AF202034) endoplasmic reticulum membra... 146 5e-34
gb|AAF24564.1|AC007764_6 (AC007764) F22C12.12 [Arabidopsis thali... 145 6e-34
gb|AAG19767.1| (AE005062) cell division cycle protein; Cdc48a [H... 143 4e-33
gb|AAG19776.1| (AE005063) cell division cycle protein; Cdc48b [H... 143 4e-33
gb|AAF74998.1| (AF199367) cdc48-like protein [Entamoeba histolyt... 142 5e-33
gb|AAD31547.1|U53149_5 (U53149) Contains similarity to Pfam doma... 141 2e-32
dbj|BAA83371.1| (AP000391) Similar to Arabidopsis thaliana chrom... 141 2e-32
gb|AAG20864.1| (AE005154) cell division cycle protein; Cdc48d [H... 141 2e-32
sp|P71408|FTSH_HELPY CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446... 140 2e-32
sp|Q9ZM66|FTSH_HELPJ CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446... 140 3e-32
pir||T23322 hypothetical protein K04G2.3 - Caenorhabditis elegan... 139 3e-32
gb|AAF91246.1|AF227502_1 (AF227502) proteasome regulatory ATPase... 139 3e-32
emb|CAA67594.1| (X99207) smallminded [Drosophila melanogaster] 139 4e-32
gb|AAF50566.1| (AE003559) smid gene product [Drosophila melanoga... 139 4e-32
gb|AAB66377.1| (U97567) FtsH [Helicobacter pylori] 139 6e-32
gb|AAG10801.1|AC022284_6 (AC022284) L3377.6 [Leishmania major] 138 1e-31
pir||T50928 calmodulin-binding protein [imported] - Arabidopsis ... 137 2e-31
pir||T51257 calmodulin-binding protein - Arabidopsis thaliana >g... 137 2e-31
gb|AAF05624.1| (AF059715) cell survival CED-4-interacting protei... 137 2e-31
gb|AAG29874.1| (AF313486) valosin-containing protein [Homo sapiens] 136 3e-31
emb|CAB60418.1| (AL117203) contains similarity to Pfam domain: P... 136 3e-31
pir||T31590 hypothetical protein Y48C3A.h - Caenorhabditis elegans 136 3e-31
sp|O32617|FTSH_HELFE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|1127... 136 4e-31
pir||T40537 AAA family ATPase - fission yeast (Schizosaccharomyc... 136 5e-31
gb|AAC44563.1| (U59452) HpFtsH [Helicobacter pylori] 135 7e-31
pir||S51042 tat-binding protein homolog - malaria parasite (Plas... 134 1e-30
gb|AAF27916.1|AF220199_1 (AF220199) 26S proteasome regulatory su... 134 1e-30
dbj|BAB17626.1| (AB033537) 26S proteasome regulatory particle tr... 134 1e-30
gb|AAB70457.1| (U68140) nuclear VCP-like protein NVLp.2 [Homo sa... 134 1e-30
gi|4505483 nuclear VCP-like; Nuclear valosin-containing protein-... 134 1e-30
gb|AAF22526.1|AF123395_1 (AF123395) 26S proteasome AAA-ATPase su... 134 1e-30
gi|6323429 homology to the CDC48 gene product; Afg2p [Saccharomy... 134 2e-30
pir||T49647 MSP1 related protein [imported] - Neurospora crassa ... 134 2e-30
gb|AAK42941.1| AAA family ATPase [Sulfolobus solfataricus] 133 3e-30
gb|AAF53216.1| (AE003637) CG5776 gene product [Drosophila melano... 133 3e-30
gb|AAF58864.1| (AE003831) TER94 gene product [alt 1] [Drosophila... 133 3e-30
sp|Q9ZEA2|FTSH_RICPR CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446... 132 4e-30
gi|8922407 fidgetin; fidgetin; hypothetical protein FLJ10405 [Ho... 132 4e-30
gb|AAF52903.1| (AE003628) CG5395 gene product [Drosophila melano... 132 4e-30
gi|11428694 fidgetin; hypothetical protein FLJ10405 [Homo sapiens] 132 4e-30
sp|O14126|PRSA_SCHPO 26S PROTEASE REGULATORY SUBUNIT 6A >gi|7435... 132 8e-30
gi|11181772 fidgetin; fidget [Mus musculus] >gi|10442027|gb|AAG1... 132 8e-30
emb|CAB62856.1| (AL035475) hypothetical protein MAL4P2.15 [Plasm... 131 1e-29
gb|AAF01545.1|AC009325_15 (AC009325) putative cell division cont... 130 2e-29
sp|P54777|PEX6_RAT PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROXIS... 130 3e-29
dbj|BAA24931.1| (D89660) peroxisome assembly factor-2 [Rattus no... 130 3e-29
gb|AAG09749.1|AF233277_1 (AF233277) peroxin-6 [Penicillium chrys... 130 3e-29
gi|6324691 26S protease regulatory subunit; Rpt5p [Saccharomyces... 129 4e-29
sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 129 4e-29
sp|O67077|FTSH_AQUAE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446... 129 4e-29
gb|AAD46145.1| (AF081573) 19S proteasome regulatory complex subu... 129 4e-29
gb|AAF22525.1|AF123394_1 (AF123394) 26S proteasome AAA-ATPase su... 129 4e-29
sp|P46465|PRSA_ORYSA 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 129 7e-29
sp|O13764|PEX6_SCHPO PROBABLE PEROXIN-6 >gi|7492793|pir||T37816 ... 129 7e-29
sp|O04019|PRSA_ARATH 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 128 9e-29
gi|6321465 40 kDa putative membrane-spanning ATPase; Msp1p [Sacc... 128 1e-28
sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 127 1e-28
dbj|BAA88165.1| (AB024399) FtsH (FtsHcp) [Cyanidioschyzon merolae] 127 2e-28
sp|P46468|CDAT_PLAFA PUTATIVE CELL DIVISION CYCLE ATPASE >gi|552... 127 3e-28
gb|AAF91248.1|AF227504_1 (AF227504) proteasome regulatory ATPase... 127 3e-28
sp|P47695|FTSH_MYCGE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|1361... 126 3e-28
gb|AAB63647.1| (AC001645) cell division protein FtsH isolog [Ara... 125 7e-28
gb|AAF47769.1| (AE003478) CG12010 gene product [Drosophila melan... 125 7e-28
dbj|BAB01269.1| (AB023046) cell division protein FtsH-like [Arab... 125 7e-28
emb|CAA56963.1| (X81072) YTA7 [Saccharomyces cerevisiae] 125 1e-27
gi|6321709 26S proteasome ATPase; Yta7p [Saccharomyces cerevisia... 125 1e-27
emb|CAB58003.1| (AL121800) BACN5I9.i [Drosophila melanogaster] >... 125 1e-27
emb|CAB58013.1| (AL121800) BACN5I9.gs.8 [Drosophila melanogaster] 125 1e-27
sp|P75120|FTSH_MYCPN CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2146... 124 1e-27
pir||T03904 hypothetical protein F39G3.7 - Caenorhabditis elegan... 124 1e-27
gi|11467752 hypothetical chloroplast RF25 [Guillardia theta] >gi... 124 2e-27
emb|CAA47023.1| (X66400) sug1 [Saccharomyces cerevisiae] >gi|119... 123 2e-27
gi|6321390 ATPase; Rpt6p [Saccharomyces cerevisiae] >gi|1709801|... 123 2e-27
prf||1813279A SUG1 gene [Saccharomyces cerevisiae] 123 2e-27
gb|AAB70882.1| (U77918) spermatogenic cell/sperm-associated Tat-... 123 2e-27
sp|P34124|PRS8_DICDI 26S PROTEASE REGULATORY SUBUNIT 8 (TAT-BIND... 123 3e-27
pir||A48667 peroxisomal assembly protein 5 - yeast (Pichia pasto... 123 4e-27
sp|Q25544|PRS8_NAEFO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (... 123 4e-27
sp|O42586|PRSB_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BIN... 123 4e-27
pir||D82934 ATP-dependent zinc metallopeptidase, cell division p... 123 4e-27
gi|4506211 proteasome (prosome, macropain) 26S subunit, ATPase, ... 122 5e-27
gb|AAB24840.1| Tat binding protein 1, TBP-1=transcriptional acti... 122 5e-27
sp|P33289|PEX6_PICPA PEROXISOME BIOSYNTHESIS PROTEIN PAS5 (PEROX... 122 5e-27
sp|P17980|PRSA_HUMAN 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BIN... 122 5e-27
sp|Q63569|PRSA_RAT 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDI... 122 5e-27
sp|P46470|PRS8_XENLA 26S PROTEASE REGULATORY SUBUNIT 8 (SUG1 HOM... 122 5e-27
sp|O42587|PRSA_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BIN... 122 5e-27
gi|11437005 proteasome (prosome, macropain) 26S subunit, ATPase,... 122 5e-27
gi|11465515 unknown; cell division protein [Cyanidium caldarium]... 122 6e-27
gi|6679503 proteasome (prosome, macropain) 26S subunit, ATPase 3... 121 1e-26
emb|CAB51029.1| (AJ243808) metalloprotease FtsH [Bradyrhizobium ... 121 1e-26
sp|P71377|FTH1_HAEIN CELL DIVISION PROTEIN FTSH HOMOLOG 1 >gi|15... 120 2e-26
gb|AAB60775.1| (AC000375) Similar to Xenopus TER ATPase (gb|X542... 120 2e-26
pir||D75502 cell division protein FtsH - Deinococcus radiodurans... 120 2e-26
pir||T33155 hypothetical protein F56H1.4 - Caenorhabditis elegan... 120 3e-26
gb|AAD25809.1|AC006550_17 (AC006550) Belongs to PF|00004 ATPases... 119 6e-26
gb|AAD52812.1|AF129874_1 (AF129874) peroxin-6 [Pichia angusta] 118 7e-26
gi|11465793 hypothetical chloroplast ORF 25. [Porphyra purpurea]... 118 1e-25
pir||T44596 26S proteasome regulatory complex chain p50 [importe... 118 1e-25
sp|P73179|FTH2_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 2 >gi|74... 118 1e-25
sp|Q55700|FTH1_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 1 >gi|74... 116 3e-25
pir||T00863 hypothetical protein F17K2.3 - Arabidopsis thaliana ... 116 3e-25
pir||D75448 cell division protein FtsH - Deinococcus radiodurans... 116 3e-25
sp|P54816|TBP7_CAEEL TAT-BINDING HOMOLOG 7 >gi|7498868|pir||T207... 116 5e-25
gb|AAF58736.1| (AE003828) CG11919 gene product [Drosophila melan... 116 5e-25
sp|P94304|FTSH_BACFI CELL DIVISION PROTEIN FTSH HOMOLOG >gi|1813... 115 6e-25
sp|P36966|PEX6_YARLI PEROXISOME BIOSYNTHESIS PROTEIN PAY4 (PEROX... 115 1e-24
dbj|BAB00559.1| (AP001299) contains similarity to 26S proteasome... 114 1e-24
sp|P42811|PRS2_METTM PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HO... 112 7e-24
pir||D70198 cell division protein (ftsH) homolog - Lyme disease ... 111 2e-23
emb|CAB51031.1| (AJ243811) l(3)70Da [Drosophila melanogaster] 111 2e-23
gb|AAF49760.1| (AE003536) l(3)70Da gene product [Drosophila mela... 111 2e-23
dbj|BAB03804.1| (AP001507) cell-division protein (ATP-dependent ... 110 3e-23
gi|11498088 AAA superfamily ATPase [Archaeoglobus fulgidus] >gi|... 105 9e-22
dbj|BAA85441.1| (AP000616) EST D15969(C1695) corresponds to a re... 104 1e-21
sp|P46509|YL15_MYCLE PUTATIVE AAA-FAMILY ATPASE MLCB2533.12/A212... 104 2e-21
gi|4507173 paraplegin [Homo sapiens] >gi|3273089|emb|CAA76314.1|... 102 8e-21
gb|AAD28099.1| (AF080525) paraplegin [Homo sapiens] 102 8e-21
pir||G01234 N-ethylmaleimide-sensitive factor - human (fragment)... 93 5e-18
gi|11079228 N-ethylmaleimide-sensitive factor [Homo sapiens] >gi... 93 5e-18
gb|AAF04745.2|AF102846_1 (AF102846) N-ethylmaleimide-sensitive f... 93 5e-18
pir||S04235 vesicular fusion protein NSF - Chinese hamster (frag... 92 7e-18
sp|P18708|NSF_CRIGR VESICULAR-FUSION PROTEIN NSF (N-ETHYLMALEIMI... 92 7e-18
gi|6679140 N-ethylmaleimide sensitive fusion protein [Mus muscul... 92 7e-18
gb|AAD39485.1|AF142097_1 (AF142097) N-ethylmaleimide sensitive f... 92 7e-18
gb|AAC46844.1| (U28836) N-ethylmaleimide sensitive fusion protei... 89 8e-17
sp|P54351|NSF2_DROME VESICULAR-FUSION PROTEIN NSF2 (N-ETHYLMALEI... 89 8e-17
gb|AAF54995.1| (AE003702) Nsf2 gene product [Drosophila melanoga... 89 8e-17
sp|P46461|NSF1_DROME VESICULAR-FUSION PROTEIN NSF1 (N-ETHYLMALEI... 88 2e-16
gb|AAF48244.1| (AE003492) comt gene product [Drosophila melanoga... 88 2e-16
gb|AAF18300.1|AF118384_1 (AF118384) N-ethylmaleimide sensitive f... 86 7e-16
pir||T18421 hypothetical protein C0140c - malaria parasite (Plas... 78 1e-13
gb|AAF26780.1|AC016829_4 (AC016829) unknown protein [Arabidopsis... 69 6e-11
pir||S74396 hypothetical protein slr0480 - Synechocystis sp. (st... 69 7e-11
>pir||B75132 cell division control protein 48, aaa family (cdc48-2) PAB1789 -
Pyrococcus abyssi (strain Orsay)
>gi|5458282|emb|CAB49771.1| (AJ248285) CELL DIVISION
CONTROL PROTEIN 48, AAA FAMILY (CDC48-2) [Pyrococcus
abyssi]
Length = 363
Score = 708 bits (1807), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MYRLQLLQVQKCQEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKW 60
MYRLQLLQVQKCQEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKW
Sbjct: 1 MYRLQLLQVQKCQEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKW 60
Query: 61 EEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEP 120
EEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEP
Sbjct: 61 EEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEP 120
Query: 121 PQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLS 180
PQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLS
Sbjct: 121 PQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLS 180
Query: 181 PSVIFIDEVDSLTMKRVSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM 240
PSVIFIDEVDSLTMKRVSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM
Sbjct: 181 PSVIFIDEVDSLTMKRVSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM 240
Query: 241 LSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLAT 300
LSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLAT
Sbjct: 241 LSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLAT 300
Query: 301 MKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKE 360
MKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKE
Sbjct: 301 MKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKE 360
Query: 361 FAI 363
FAI
Sbjct: 361 FAI 363
>pir||C71073 hypothetical protein PH1278 - Pyrococcus horikoshii
>gi|3257698|dbj|BAA30381.1| (AP000005) 363aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 363
Score = 633 bits (1614), Expect = e-180
Identities = 311/363 (85%), Positives = 348/363 (95%)
Query: 1 MYRLQLLQVQKCQEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKW 60
M+RLQ+LQVQKC EEFE+A++LG YDKARLIALRC+ELLR +ASENL LSHILLEEAKKW
Sbjct: 1 MHRLQILQVQKCHEEFEKAMALGQYDKARLIALRCSELLRNLASENLDLSHILLEEAKKW 60
Query: 61 EEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEP 120
E+KA+N+RK++E +NEYFD+LK LIK+ST+TWNDIGGL+EAKKLIAQA+GLSIAKSPI+P
Sbjct: 61 EDKARNIRKKKEARNEYFDRLKVLIKKSTVTWNDIGGLKEAKKLIAQAVGLSIAKSPIDP 120
Query: 121 PQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLS 180
PQGILLFGPPGTGKSLLASA ANSLNATFFSVKASDLLSKYFGESSKL+SALFSLARQLS
Sbjct: 121 PQGILLFGPPGTGKSLLASATANSLNATFFSVKASDLLSKYFGESSKLVSALFSLARQLS 180
Query: 181 PSVIFIDEVDSLTMKRVSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM 240
PSVIFIDEVDSLTMKR SLDDAARRMIGTLLAE+DGFK+++ KVIVLTATN PWDLDEAM
Sbjct: 181 PSVIFIDEVDSLTMKRSSLDDAARRMIGTLLAEIDGFKDKRRKVIVLTATNTPWDLDEAM 240
Query: 241 LSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLAT 300
LSRLPIRIYVPLPD+ SAVEIF+IHLRGI ++V L++LAKEAVK+LYSGREIANVVKLAT
Sbjct: 241 LSRLPIRIYVPLPDIPSAVEIFRIHLRGIPHEVSLNKLAKEAVKKLYSGREIANVVKLAT 300
Query: 301 MKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKE 360
MKMLEEMNPEL DPLRV+TLKG+DLTTRPLT+DDF+YAMA+IKSPITKSDVKKYE+WAKE
Sbjct: 301 MKMLEEMNPELVDPLRVATLKGKDLTTRPLTMDDFRYAMAKIKSPITKSDVKKYEKWAKE 360
Query: 361 FAI 363
F I
Sbjct: 361 FGI 363
>gi|11498895 cell division control protein 48, AAA family (cdc48-1)
[Archaeoglobus fulgidus] >gi|7435749|pir||H69411 cell
division control protein 48, AAA family (cdc48-1)
homolog - Archaeoglobus fulgidus
>gi|2649281|gb|AAB89948.1| (AE001014) cell division
control protein 48, AAA family (cdc48-1) [Archaeoglobus
fulgidus]
Length = 733
Score = 199 bits (501), Expect = 4e-50
Identities = 129/332 (38%), Positives = 190/332 (56%), Gaps = 27/332 (8%)
Query: 49 LSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLK------ALIKRSTITWNDIGGLREAK 102
L I +E + E +N++ RE E ++ L++ + W DIGGL AK
Sbjct: 405 LPEIDIEAEEIPAEVIENLKVTREDFMEALKNIEPSAMREVLVEVPNVKWEDIGGLEHAK 464
Query: 103 KLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASD 156
+ + +A+ + + I+PP+GILLFGPPGTGK+LLA AVAN NA F SVK +
Sbjct: 465 QELMEAVEWPLKYPEVFRAANIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPE 524
Query: 157 LLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDA--ARRMIGTLLAEM 214
LLSK+ GES K + +F ARQ++P VIF DE+DSL +R + D+ R++ LL E+
Sbjct: 525 LLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTEL 584
Query: 215 DGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRG--IH 270
DG +E KD V+V+ ATN P +D A+L RL IY+P PD + VEIFKIHLRG +
Sbjct: 585 DGLEELKD-VVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLA 643
Query: 271 YDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM-NPELSDPLRVSTLKGRDLTTRP 329
DV + LA++ YSG +I V + A M + E+ P ++ K +T +
Sbjct: 644 DDVNIEELAEKT--EGYSGADIEAVCREAGMLAIRELIKPGMTREEAKEAAKKLKITKK- 700
Query: 330 LTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
F+ A+ +++ +TK DV+KYE+ ++F
Sbjct: 701 ----HFEEALKKVRPSLTKEDVEKYEKLIEDF 728
Score = 155 bits (389), Expect = 5e-37
Identities = 99/273 (36%), Positives = 156/273 (56%), Gaps = 20/273 (7%)
Query: 85 IKRST--ITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKS 135
+KR+ +T+ DIGGL+ +L+ + I L + K P IEPP+G+LL+GPPGTGK+
Sbjct: 172 VKRAVPDVTYEDIGGLKRELRLVREMIELPL-KHPELFQRLGIEPPKGVLLYGPPGTGKT 230
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
L+A AVAN ++A F + +++SKY+GES + + +F A++ +PS+IFIDE+DS+ K
Sbjct: 231 LIAKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPK 290
Query: 196 RVSL-DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPL 252
R + + RR++ LLA MDG + R D VIV+ ATN P +D A+ R I + +
Sbjct: 291 REEVTGEVERRVVAQLLALMDGLEARGD-VIVIAATNRPDAIDPALRRPGRFDREIEIGV 349
Query: 253 PDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPE 310
PD EI +IH R + DV L LA+ + + G ++ + K A M L + PE
Sbjct: 350 PDKEGRKEILEIHTRKMPLAEDVDLEELAE--LTNGFVGADLEALCKEAAMHALRRVLPE 407
Query: 311 LSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIK 343
+ + + + +T +DF A+ I+
Sbjct: 408 ID--IEAEEIPAEVIENLKVTREDFMEALKNIE 438
>gb|AAD53310.1|AF177942_1 (AF177942) katanin p60 [Xenopus laevis]
Length = 486
Score = 197 bits (495), Expect = 2e-49
Identities = 123/317 (38%), Positives = 182/317 (56%), Gaps = 32/317 (10%)
Query: 69 KRREGKNEYFDKLKALIK-----RSTITWNDIGGLREAKKLIAQAIGLSI-----AKSPI 118
KR +G D ++AL + I W+DI L EAKKL+ +A+ L + K
Sbjct: 177 KRFDGSGYDKDLIEALERDIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIR 236
Query: 119 EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQ 178
P +G+L+ GPPGTGK+LLA AVA TFF++ +S L SKY GES KL+ LF +AR
Sbjct: 237 RPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARF 296
Query: 179 LSPSVIFIDEVDSLTMKRVSLD--DAARRMIGTLLAEMDGF---KERKD---KVIVLTAT 230
+P+ IFIDE+DS+ +R + + +A+RR+ LL +MDG E +D V+VL AT
Sbjct: 297 YAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAAT 356
Query: 231 NAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYS 288
N PWD+DEA+ RL RIY+PLP E+ +I+L+ + DV + +A+ YS
Sbjct: 357 NFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDG--YS 414
Query: 289 GREIANVVK----LATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKS 344
G +I NV + +A + +E + PE L RD P T++DF+ A+ ++
Sbjct: 415 GADITNVCRDASLMAMRRRIEGLTPEEIRNL------SRDDMHMPTTMEDFEMALKKVSK 468
Query: 345 PITKSDVKKYERWAKEF 361
++ SD++KYE+W EF
Sbjct: 469 SVSASDIEKYEKWIFEF 485
>gi|6754410 katanin p60 (ATPase-containing) subunit A1 [Mus musculus]
>gi|5326894|gb|AAD42087.1|AF153197_1 (AF153197)
lipotransin [Mus musculus]
Length = 491
Score = 196 bits (494), Expect = 3e-49
Identities = 131/338 (38%), Positives = 187/338 (54%), Gaps = 39/338 (11%)
Query: 55 EEAKKWEEKAKNVRKRREGKNEYFD------KLKALIKRSTIT------WNDIGGLREAK 102
E++K EEK K E + FD L ++R I+ W DI L EAK
Sbjct: 159 EQSKGREEKNKLPAAVTEPEANKFDGTGYDKDLVEALERDIISQNPNVRWYDIADLVEAK 218
Query: 103 KLIAQAIGLSI-----AKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDL 157
KL+ +A+ L + K P +G+L+ GPPGTGK+LLA AVA TFF+V +S L
Sbjct: 219 KLLQEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTL 278
Query: 158 LSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD--DAARRMIGTLLAEMD 215
SKY GES KL+ LF +AR SP+ IFIDE+DS+ +R + + +A+RRM LL +MD
Sbjct: 279 TSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRMKAELLVQMD 338
Query: 216 GF---KERKD---KVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGI 269
G E D V+VL ATN PWD+DEA+ RL RIY+PLP E+ +I LR +
Sbjct: 339 GVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLREL 398
Query: 270 HY--DVPLSRLAKEAVKRLYSGREIANVVK----LATMKMLEEMNPELSDPLRVSTLKGR 323
DV L+ +A+ YSG +I NV + +A + +E + PE L R
Sbjct: 399 ELADDVNLASIAEN--MEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNL------SR 450
Query: 324 DLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
+ P T++DF+ A+ +I ++ +D+++YE+W EF
Sbjct: 451 EAMHMPTTMEDFEMALKKISKSVSAADIERYEKWIVEF 488
>gb|AAF12877.1|AF205377_1 (AF205377) p60 katanin [Chlamydomonas reinhardtii]
Length = 558
Score = 196 bits (493), Expect = 3e-49
Identities = 121/329 (36%), Positives = 187/329 (56%), Gaps = 36/329 (10%)
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKR------STITWNDIGGLREAKKLIAQAIGLSIAK 115
EKAK K+ G ++ +L A+++R +++ W+DI GL EAK+++ +A+ L +
Sbjct: 234 EKAK---KQYSGPDQ---ELAAMLERDIVDQGTSVKWDDIAGLEEAKRVLNEALVLPMIM 287
Query: 116 SPI-----EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLIS 170
P +G+LLFGPPGTGK++LA A A + TFF+V ++ L SKY GES +++
Sbjct: 288 PDFFTGIRRPVKGVLLFGPPGTGKTMLAKAAATETSCTFFNVSSATLASKYRGESERMVR 347
Query: 171 ALFSLARQLSPSVIFIDEVDSLTMKRVSLD--DAARRMIGTLLAEMDGFK-ERKDK---- 223
LF +AR L+PS+IFIDEVDSL +R + + +A+RR+ LL ++DG KDK
Sbjct: 348 ILFEMARDLAPSMIFIDEVDSLCSQRGTANEHEASRRVKTELLTQVDGVHGSEKDKEPGP 407
Query: 224 ---------VIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVP 274
V VL ATN PWD+DEA+ RL R+Y+PLP +++ KI+LR +
Sbjct: 408 DGEPPAPKHVFVLAATNFPWDIDEALRRRLEKRVYIPLPGQAQRLQLLKINLRDVAVAPD 467
Query: 275 LSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLT--TRPLTL 332
++ A YSG +I NV + A M + + P + L+ +T P+T
Sbjct: 468 VNLEAVAGQMDGYSGDDITNVCRDAAMNGMRRLVAG-KTPAEIKALREAGMTGGQEPITS 526
Query: 333 DDFKYAMARIKSPITKSDVKKYERWAKEF 361
DDF+ A+ +I ++K D+K++E W F
Sbjct: 527 DDFREALRKINPSVSKEDIKRHEEWLSVF 555
>gi|5901990 katanin p60 subunit A 1 [Homo sapiens] >gi|3283072|gb|AAC25114.1|
(AF056022) p60 katanin [Homo sapiens]
Length = 491
Score = 196 bits (493), Expect = 3e-49
Identities = 127/334 (38%), Positives = 188/334 (56%), Gaps = 31/334 (9%)
Query: 55 EEAKKWEEKAKNVRKRREGKNEYFDK------LKALIKRSTIT------WNDIGGLREAK 102
E+ K EEK K+ E + FD L ++R I+ W+DI L EAK
Sbjct: 159 EQNKGREEKNKSPAAVTEPETNKFDSTGYDKDLVEALERDIISQNPNVRWDDIADLVEAK 218
Query: 103 KLIAQAIGLSI-----AKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDL 157
KL+ +A+ L + K P +G+L+ GPPGTGK+LLA AVA TFF+V +S L
Sbjct: 219 KLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTL 278
Query: 158 LSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD--DAARRMIGTLLAEMD 215
SKY GES KL+ LF +AR SP+ IFIDE+DS+ +R + + +A+RR+ LL +MD
Sbjct: 279 TSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMD 338
Query: 216 GF---KERKD---KVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGI 269
G E D V+VL ATN PWD+DEA+ RL RIY+PLP E+ +I LR +
Sbjct: 339 GVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLREL 398
Query: 270 HY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTT 327
DV L+ +A+ YSG +I NV + A++ + L+ P + L ++
Sbjct: 399 ELADDVDLASIAEN--MEGYSGADITNVCRDASLMAMRRRIEGLT-PEEIRNLSKEEM-H 454
Query: 328 RPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
P T++DF+ A+ ++ ++ +D+++YE+W EF
Sbjct: 455 MPTTMEDFEMALKKVSKSVSAADIERYEKWIFEF 488
>emb|CAB88114.1| (AL078581) dJ12G14.4 (katanin p60 (ATPase-containing) subunit A 1)
[Homo sapiens]
Length = 384
Score = 196 bits (493), Expect = 3e-49
Identities = 127/334 (38%), Positives = 188/334 (56%), Gaps = 31/334 (9%)
Query: 55 EEAKKWEEKAKNVRKRREGKNEYFDK------LKALIKRSTIT------WNDIGGLREAK 102
E+ K EEK K+ E + FD L ++R I+ W+DI L EAK
Sbjct: 52 EQNKGREEKNKSPAAVTEPETNKFDSTGYDKDLVEALERDIISQNPNVRWDDIADLVEAK 111
Query: 103 KLIAQAIGLSI-----AKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDL 157
KL+ +A+ L + K P +G+L+ GPPGTGK+LLA AVA TFF+V +S L
Sbjct: 112 KLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTL 171
Query: 158 LSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD--DAARRMIGTLLAEMD 215
SKY GES KL+ LF +AR SP+ IFIDE+DS+ +R + + +A+RR+ LL +MD
Sbjct: 172 TSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMD 231
Query: 216 GF---KERKD---KVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGI 269
G E D V+VL ATN PWD+DEA+ RL RIY+PLP E+ +I LR +
Sbjct: 232 GVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLREL 291
Query: 270 HY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTT 327
DV L+ +A+ YSG +I NV + A++ + L+ P + L ++
Sbjct: 292 ELADDVDLASIAEN--MEGYSGADITNVCRDASLMAMRRRIEGLT-PEEIRNLSKEEM-H 347
Query: 328 RPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
P T++DF+ A+ ++ ++ +D+++YE+W EF
Sbjct: 348 MPTTMEDFEMALKKVSKSVSAADIERYEKWIFEF 381
>gi|11418569 katanin p60 (ATPase-containing) subunit A 1 [Homo sapiens]
Length = 385
Score = 196 bits (493), Expect = 3e-49
Identities = 127/334 (38%), Positives = 188/334 (56%), Gaps = 31/334 (9%)
Query: 55 EEAKKWEEKAKNVRKRREGKNEYFDK------LKALIKRSTIT------WNDIGGLREAK 102
E+ K EEK K+ E + FD L ++R I+ W+DI L EAK
Sbjct: 54 EQNKGREEKNKSPAAVTEPETNKFDSTGYDKDLVEALERDIISQNPNVRWDDIADLVEAK 113
Query: 103 KLIAQAIGLSI-----AKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDL 157
KL+ +A+ L + K P +G+L+ GPPGTGK+LLA AVA TFF+V +S L
Sbjct: 114 KLLKEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTL 173
Query: 158 LSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD--DAARRMIGTLLAEMD 215
SKY GES KL+ LF +AR SP+ IFIDE+DS+ +R + + +A+RR+ LL +MD
Sbjct: 174 TSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMD 233
Query: 216 GF---KERKD---KVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGI 269
G E D V+VL ATN PWD+DEA+ RL RIY+PLP E+ +I LR +
Sbjct: 234 GVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLREL 293
Query: 270 HY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTT 327
DV L+ +A+ YSG +I NV + A++ + L+ P + L ++
Sbjct: 294 ELADDVDLASIAEN--MEGYSGADITNVCRDASLMAMRRRIEGLT-PEEIRNLSKEEM-H 349
Query: 328 RPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
P T++DF+ A+ ++ ++ +D+++YE+W EF
Sbjct: 350 MPTTMEDFEMALKKVSKSVSAADIERYEKWIFEF 383
>gb|AAF52059.1| (AE003603) katanin-60 gene product [Drosophila melanogaster]
Length = 554
Score = 196 bits (492), Expect = 4e-49
Identities = 117/290 (40%), Positives = 174/290 (59%), Gaps = 16/290 (5%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIA-----KSPIEPPQGILLFGPPGTGKSLLA 138
L K + W+DI L +AK+L+ +A+ L + K P +G+L+ GPPGTGK++LA
Sbjct: 266 LQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFKGIRRPWKGVLMVGPPGTGKTMLA 325
Query: 139 SAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-- 196
AVA TFF+V ++ L SKY GES K++ LF +AR +PS IFIDE+DSL +R
Sbjct: 326 KAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLCSRRGS 385
Query: 197 VSLDDAARRMIGTLLAEMDGF---KERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLP 253
S +A+RR+ LL +MDG +E+ V+VL ATN PWD+DEA+ RL RIY+PLP
Sbjct: 386 ESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEALRRRLEKRIYIPLP 445
Query: 254 DVNSAVEIFKIHLRGIHYD--VPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPEL 311
+ KI+LR + D V L+ +A E + YSG +I NV + A+M + L
Sbjct: 446 SDEGREALLKINLREVKVDDSVDLTYVANEL--KGYSGADITNVCREASMMSMRRKIAGL 503
Query: 312 SDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
+ P ++ L ++ P++ DF AM+R ++++D+ KYE+W +EF
Sbjct: 504 T-PEQIRQLATEEVDL-PVSNKDFNEAMSRCNKSVSRADLDKYEKWMREF 551
>gb|AAF34687.1|AF223064_1 (AF223064) putative microtubule severing protein katanin p60
subunit [Drosophila melanogaster]
Length = 571
Score = 193 bits (485), Expect = 3e-48
Identities = 116/289 (40%), Positives = 173/289 (59%), Gaps = 15/289 (5%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIA-----KSPIEPPQGILLFGPPGTGKSLLA 138
L K + W+DI L +AK+L+ +A+ L + K P +G+L+ GP GTGK++LA
Sbjct: 284 LQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFKGIRRPWKGVLMVGPSGTGKTMLA 343
Query: 139 SAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-- 196
AVA TFF+V ++ L SKY GES K++ LF +AR +PS IFIDE+DSL +R
Sbjct: 344 KAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDSLCSRRGS 403
Query: 197 VSLDDAARRMIGTLLAEMDGF--KERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPD 254
S +A+RR+ LL +MDG +E+ V+VL ATN PWD+DEA+ RL RIY+PLP
Sbjct: 404 ESEHEASRRVKSELLVQMDGVAREEQAKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPS 463
Query: 255 VNSAVEIFKIHLRGIHYD--VPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELS 312
+ KI+LR + D V L+ +A E + YSG +I NV + A+M + L+
Sbjct: 464 DEGREALLKINLREVKVDDSVDLTYVANEL--KGYSGADITNVCREASMMSMRRKIAGLT 521
Query: 313 DPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
P ++ L ++ P++ DF AM+R ++++D+ KYE+W +EF
Sbjct: 522 -PEQIRQLATEEVDL-PVSNKDFNEAMSRCNKSVSRADLDKYEKWMREF 568
>gb|AAF21247.1|AF048706_1 (AF048706) CAD ATPase; AAA1 [Arabidopsis thaliana]
>gi|6751710|gb|AAF27692.1|AC018848_9 (AC018848) CAD
ATPase (AAA1); 35570-33019 [Arabidopsis thaliana]
Length = 523
Score = 192 bits (483), Expect = 5e-48
Identities = 117/323 (36%), Positives = 184/323 (56%), Gaps = 30/323 (9%)
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKRST------ITWNDIGGLREAKKLIAQAIGLSIAK 115
E K+ R EG +E L A+++R + W+D+ GL EAK+L+ +A+ L +
Sbjct: 205 EDGKSKRGLYEGPDE---DLAAMLERDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWM 261
Query: 116 SPI-----EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLIS 170
P +G+L+FGPPGTGK+LLA AVA TFF+V ++ L SK+ GES +++
Sbjct: 262 PEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVR 321
Query: 171 ALFSLARQLSPSVIFIDEVDSLTMKR--VSLDDAARRMIGTLLAEMDGFKE-------RK 221
LF LAR +PS IFIDE+DSL R +++RR+ LL ++DG +
Sbjct: 322 CLFDLARAYAPSTIFIDEIDSLCNSRGGSGEHESSRRVKSELLVQVDGVSNTATNEDGSR 381
Query: 222 DKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLA 279
V+VL ATN PWD+DEA+ RL RIY+PLPD S + I+LR + DV + +A
Sbjct: 382 KIVMVLAATNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVA 441
Query: 280 KEAVKRLYSGREIANVVKLATMK-MLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYA 338
+ YSG ++ NV + A+M M ++ + D + + D++ P+ + DF+ A
Sbjct: 442 RRT--EGYSGDDLTNVCRDASMNGMRRKIAGKTRD--EIKNMSKDDISNDPVAMCDFEEA 497
Query: 339 MARIKSPITKSDVKKYERWAKEF 361
+ +++ ++ SD++K+E+W EF
Sbjct: 498 IRKVQPSVSSSDIEKHEKWLSEF 520
>gb|AAC15706.1| (AF052191) katanin p60 subunit [Strongylocentrotus purpuratus]
Length = 516
Score = 190 bits (479), Expect = 1e-47
Identities = 120/327 (36%), Positives = 182/327 (54%), Gaps = 31/327 (9%)
Query: 62 EKAKNVRKRREGKNEYFDKL-----------KALIKRS-TITWNDIGGLREAKKLIAQAI 109
+K K EG + FD + +++R+ + W DI GL EAK+L+ +A+
Sbjct: 191 DKDKKAPSGEEGDEKKFDPAGYDKDLVENLERDIVQRNPNVHWADIAGLTEAKRLLEEAV 250
Query: 110 GLSI-----AKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGE 164
L + K P +G+L+ GPPGTGK++LA AVA TFF+V ++ L SKY GE
Sbjct: 251 VLPLWMPDYFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSASLTSKYHGE 310
Query: 165 SSKLISALFSLARQLSPSVIFIDEVDSLTMKR--VSLDDAARRMIGTLLAEMDGF----- 217
S KL+ LF +AR +PS IFIDE+DS+ KR S +A+RR+ LL +MDG
Sbjct: 311 SEKLVRLLFEMARFYAPSTIFIDEIDSICSKRGTGSEHEASRRVKSELLIQMDGVSGPSA 370
Query: 218 -KERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVP 274
+E V+VL ATN PWD+DEA+ RL RIY+PLP+++ ++ +I+L+ + D+
Sbjct: 371 GEESSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPEIDGREQLLRINLKEVPLADDID 430
Query: 275 LSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDD 334
L +A++ YSG +I NV + A+M + L P + + +L +P T D
Sbjct: 431 LKSIAEKMDG--YSGADITNVCRDASMMAMRRRIQGLR-PEEIRHIPKEEL-NQPSTPAD 486
Query: 335 FKYAMARIKSPITKSDVKKYERWAKEF 361
F A+ ++ + K D+ KY W +EF
Sbjct: 487 FLLALQKVSKSVGKEDLVKYMAWMEEF 513
>gb|AAF51955.1| (AE003601) CG1193 gene product [alt 1] [Drosophila melanogaster]
Length = 554
Score = 187 bits (469), Expect = 2e-46
Identities = 112/292 (38%), Positives = 167/292 (56%), Gaps = 20/292 (6%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIA-----KSPIEPPQGILLFGPPGTGKSLLA 138
L + I W D+ GL EAK ++ +A+ L + K P +G+L+ GPPGTGK++LA
Sbjct: 266 LQRHPCIKWTDVAGLNEAKTILQEAVVLPVIMPEFFKGIRRPWRGVLMVGPPGTGKTMLA 325
Query: 139 SAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-- 196
AVA TFF+V +S L SKY GES KL+ LF +AR +PS IFIDE+D+L R
Sbjct: 326 KAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDALCASRGS 385
Query: 197 VSLDDAARRMIGTLLAEMDGFKE--RKDKVI-VLTATNAPWDLDEAMLSRLPIRIYVPLP 253
S +A+RR LL +MDG +++KVI VL ATN PWD+DEA R RIY+PLP
Sbjct: 386 DSEHEASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDIDEAFRRRFEKRIYIPLP 445
Query: 254 DVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATM----KMLEEMNP 309
+ + + K+ L+ + L+ + YSG +I+NV + A+M +++ P
Sbjct: 446 NEGTRSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDISNVCRDASMMAMRRLISGRTP 505
Query: 310 ELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
+ +R R+ +P+TL DF+ A R K ++ DV ++E+W +E+
Sbjct: 506 DQIKQIR------REEVDQPITLQDFQDARLRTKKSVSADDVARFEKWMEEY 551
>gb|AAF51954.1| (AE003601) CG1193 gene product [alt 2] [Drosophila melanogaster]
Length = 669
Score = 187 bits (469), Expect = 2e-46
Identities = 112/292 (38%), Positives = 167/292 (56%), Gaps = 20/292 (6%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIA-----KSPIEPPQGILLFGPPGTGKSLLA 138
L + I W D+ GL EAK ++ +A+ L + K P +G+L+ GPPGTGK++LA
Sbjct: 381 LQRHPCIKWTDVAGLNEAKTILQEAVVLPVIMPEFFKGIRRPWRGVLMVGPPGTGKTMLA 440
Query: 139 SAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-- 196
AVA TFF+V +S L SKY GES KL+ LF +AR +PS IFIDE+D+L R
Sbjct: 441 KAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDALCASRGS 500
Query: 197 VSLDDAARRMIGTLLAEMDGFKE--RKDKVI-VLTATNAPWDLDEAMLSRLPIRIYVPLP 253
S +A+RR LL +MDG +++KVI VL ATN PWD+DEA R RIY+PLP
Sbjct: 501 DSEHEASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDIDEAFRRRFEKRIYIPLP 560
Query: 254 DVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATM----KMLEEMNP 309
+ + + K+ L+ + L+ + YSG +I+NV + A+M +++ P
Sbjct: 561 NEGTRSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDISNVCRDASMMAMRRLISGRTP 620
Query: 310 ELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
+ +R R+ +P+TL DF+ A R K ++ DV ++E+W +E+
Sbjct: 621 DQIKQIR------REEVDQPITLQDFQDARLRTKKSVSADDVARFEKWMEEY 666
>gi|6325431 AAA-type ATPase; Vps4p [Saccharomyces cerevisiae]
>gi|1706647|sp|P52917|VPS4_YEAST VACUOLAR PROTEIN
SORTING-ASSOCIATED PROTEIN VPS4 (END13 PROTEIN)
>gi|2131247|pir||S59831 END13 protein - yeast
(Saccharomyces cerevisiae) >gi|786322|gb|AAB68107.1|
(U25842) Similar to several members of the
Cdc48/Pas1/Sec18 family of proteins (Swiss Prot.
accession numbers P25694, P24004, P18759) [Saccharomyces
cerevisiae]
Length = 437
Score = 181 bits (455), Expect = 1e-44
Identities = 118/314 (37%), Positives = 170/314 (53%), Gaps = 41/314 (13%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIA-----KSPIEPPQGILLFGPPGTGKSLLA 138
L ++ + W D+ GL AK+ + +A+ L + K +P GILL+GPPGTGKS LA
Sbjct: 124 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 183
Query: 139 SAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS 198
AVA N+TFFSV +SDL+SK+ GES KL+ LF++AR+ PS+IFIDEVD+LT R
Sbjct: 184 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGE 243
Query: 199 LDDAARRMIGT-LLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNS 257
+ A R I T LL +M+G V+VL ATN PW LD A+ R RIY+PLPD+ +
Sbjct: 244 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAA 303
Query: 258 AVEIFKIHLRGIHYDVPLSRLAKEAVKRL------YSGREIANVVKLATMKMLEEMNPEL 311
+F+I++ D P L KE + L YSG +IA VVK A M+ + ++
Sbjct: 304 RTTMFEINVG----DTPCV-LTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 358
Query: 312 --------SDPLRVST----------------LKGRDLTTRPLTLDDFKYAMARIKSPIT 347
D R T ++ +L LT+ DF A+ + +
Sbjct: 359 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 418
Query: 348 KSDVKKYERWAKEF 361
+ D+ K E++ ++F
Sbjct: 419 EDDLLKQEQFTRDF 432
>emb|CAA63364.1| (X92680) allelic to VPS4 [Saccharomyces cerevisiae]
Length = 437
Score = 181 bits (455), Expect = 1e-44
Identities = 118/314 (37%), Positives = 170/314 (53%), Gaps = 41/314 (13%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIA-----KSPIEPPQGILLFGPPGTGKSLLA 138
L ++ + W D+ GL AK+ + +A+ L + K +P GILL+GPPGTGKS LA
Sbjct: 124 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 183
Query: 139 SAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS 198
AVA N+TFFSV +SDL+SK+ GES KL+ LF++AR+ PS+IFIDEVD+LT R
Sbjct: 184 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGE 243
Query: 199 LDDAARRMIGT-LLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNS 257
+ A R I T LL +M+G V+VL ATN PW LD A+ R RIY+PLPD+ +
Sbjct: 244 GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAA 303
Query: 258 AVEIFKIHLRGIHYDVPLSRLAKEAVKRL------YSGREIANVVKLATMKMLEEMNPEL 311
+F+I++ D P L KE + L YSG +IA VVK A M+ + ++
Sbjct: 304 RTTMFEINVG----DTPCV-LTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 358
Query: 312 --------SDPLRVST----------------LKGRDLTTRPLTLDDFKYAMARIKSPIT 347
D R T ++ +L LT+ DF A+ + +
Sbjct: 359 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 418
Query: 348 KSDVKKYERWAKEF 361
+ D+ K E++ ++F
Sbjct: 419 EDDLLKQEQFTRDF 432
>gb|AAF21428.1|AF165422_1 (AF165422) suppressor of K+ transport growth defect-like protein
[Mesembryanthemum crystallinum]
Length = 317
Score = 180 bits (453), Expect = 2e-44
Identities = 112/309 (36%), Positives = 177/309 (57%), Gaps = 35/309 (11%)
Query: 86 KRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLASA 140
++ + WND+ GL AK+ + +A+ L + P + LL+GPPGTGKS LA A
Sbjct: 7 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKA 66
Query: 141 VANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR--VS 198
VA ++TFFSV +SDL+SK+ GES KL+S LF +AR+ +PS+IF+DE+DSL +R +
Sbjct: 67 VATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGN 126
Query: 199 LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSA 258
+A+RR+ LL +M G +KV+VL ATN P+ LD+A+ R RIY+PLPD+ +
Sbjct: 127 ESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKAR 186
Query: 259 VEIFKIHLRGIHYDVPLSR---LAKEAVKRLYSGREIANVVKLATMKMLEEMNPEL---- 311
+FK+HL +++ S LA++A +SG +IA VK + + + +
Sbjct: 187 QHMFKVHLGDTPHNLTESDFEFLARKA--EGFSGSDIAVCVKDVLFEPVRKTQDAMFFYK 244
Query: 312 -SDPLRVS---------TLKGRDLTTR---------PLTLDDFKYAMARIKSPITKSDVK 352
SD + V + +DL + P+ DF+ +AR + ++KSD++
Sbjct: 245 TSDDVWVPCGPRQPGAVQITMQDLAAKGLAAKIVPPPIARTDFEKVLARQRPTVSKSDLE 304
Query: 353 KYERWAKEF 361
+ER+ +EF
Sbjct: 305 VHERFTQEF 313
>sp|Q07590|SAV_SULAC SAV PROTEIN >gi|1076162|pir||S43859 ATPase - Sulfolobus
acidocaldarius >gi|310600|gb|AAA72002.1| (L17042) ATPase
[Sulfolobus acidocaldarius]
Length = 780
Score = 179 bits (450), Expect = 4e-44
Identities = 113/330 (34%), Positives = 188/330 (56%), Gaps = 37/330 (11%)
Query: 64 AKNVRKRREGKNEYFDKLKAL---------IKRSTITWNDIGGLREAKKLIAQAIGLSI- 113
A+ +++ + N++ + LK++ ++ + WNDIGGL K+ + +A+ +
Sbjct: 449 AEIIKELKVSMNDFLNALKSIQPSLLREVYVEVPKVNWNDIGGLDNVKQQLREAVEWPLR 508
Query: 114 -----AKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKL 168
KS + PP+GILLFGPPGTGK++LA AVA A F +V+ ++LSK+ GES K
Sbjct: 509 FPELFTKSGVTPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKA 568
Query: 169 ISALFSLARQLSPSVIFIDEVDSLT-MKRVSLDD-AARRMIGTLLAEMDGFKERKDKVIV 226
I +F ARQ +P+VIF DE+DS+ ++ +S D R++ LLAEMDG +KV++
Sbjct: 569 IREIFRKARQAAPTVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVP-LNKVVI 627
Query: 227 LTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEA 282
+ ATN P LD A+L R IYVP PD + EI K+H + + DV L +A++A
Sbjct: 628 IAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKA 687
Query: 283 VKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGR------------DLTTRPL 330
Y+G ++ +V+ AT+ + + + D KG + T+ +
Sbjct: 688 --EGYTGADLEALVREATINAMRSIY-SMCDKQSRDECKGNMECYQKHIKECMNKTSFKV 744
Query: 331 TLDDFKYAMARIKSPITKSDVKKYERWAKE 360
+ +DF+ A+ +K+ +T++D+++YER++KE
Sbjct: 745 SKEDFEKALNVVKASLTQADIQRYERFSKE 774
Score = 146 bits (364), Expect = 5e-34
Identities = 92/270 (34%), Positives = 149/270 (55%), Gaps = 14/270 (5%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVAN 143
++W DIG L EAK+ I + + + + I+PP+GILL+GPPGTGK+LLA A+ N
Sbjct: 209 VSWEDIGDLEEAKQKIREIVEWPMRHPELFQRLGIDPPKGILLYGPPGTGKTLLARALRN 268
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
+ A F +V +++SK++GES + I +F A + +PS+IFIDE+D++ KR + +
Sbjct: 269 EIGAYFITVNGPEIMSKFYGESEQRIREIFKEAEENAPSIIFIDEIDAIAPKREDVTGEV 328
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVE 260
+R++ LL MDG K R +VIV+ ATN P +D A+ R I + PD +
Sbjct: 329 EKRVVAQLLTLMDGIKGR-GRVIVIGATNRPDAIDPALRRPGRFDREIEIRPPDTKGRKD 387
Query: 261 IFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I ++H R I DV L +LA+ Y+G ++A + K A + L E L
Sbjct: 388 ILQVHTRNMPITDDVDLDKLAEMTYG--YTGADLAALAKEAAIYALRRFVDEKKLNLDQP 445
Query: 319 TLKGRDLTTRPLTLDDFKYAMARIKSPITK 348
T+ + ++++DF A+ I+ + +
Sbjct: 446 TIPAEIIKELKVSMNDFLNALKSIQPSLLR 475
>pir||H72692 probable p60 katanin APE0960 - Aeropyrum pernix (strain K1)
>gi|5104629|dbj|BAA79944.1| (AP000060) 384aa long
hypothetical p60 katanin [Aeropyrum pernix]
Length = 384
Score = 179 bits (449), Expect = 5e-44
Identities = 125/371 (33%), Positives = 193/371 (51%), Gaps = 44/371 (11%)
Query: 23 GHYDKARLIALRCAELLRKIASE--NLSLSHILLEEAKKWEEKAKNVRKRRE-----GKN 75
G Y+ A + + E L +I + L+HI ++ K K++ K+ G
Sbjct: 25 GDYEAAIVNLNKAIEYLTEIVRNYPDYPLAHIYRRLIAQYRRKVKDLEKKARMIPASGDE 84
Query: 76 EYFDKLK------------ALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEP--- 120
Y D + L ++ ++T++DI GL EAKK I +AI + + + P
Sbjct: 85 VYVDTQEKDGGGEDEAPEFVLKEKPSVTFDDIAGLEEAKKAIREAIVFPVKRPDLFPLGW 144
Query: 121 PQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLS 180
P+GILL+GPPGTGK++LASAVAN ++ F V A++++SK+ GE K + LF+ AR +
Sbjct: 145 PRGILLYGPPGTGKTMLASAVANEIDGEFLYVDAANIMSKWLGEGEKNVKKLFNYARNKA 204
Query: 181 ----PSVIFIDEVDSLTMKRVSLDDAARRMIGTLLAEMDGFKERKDK--VIVLTATNAPW 234
P VIFIDEVD+L S R+ L EMDG +++ + V V+ ATN PW
Sbjct: 205 KEGKPVVIFIDEVDALLGVHGSEVGGEVRVRNQFLKEMDGIQDKGSRLHVYVIAATNKPW 264
Query: 235 DLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREI 292
LDE + R RIYVPLP + + +++ R + DV L RLA+ + Y+G +I
Sbjct: 265 KLDEPFIRRFQKRIYVPLPSRETRKRMLEMYTRKLRLAGDVDLDRLAE--MLEGYTGSDI 322
Query: 293 ANVVKLATMKMLEEMNPELSDPLRVSTLKGR-DLTTRPLTLDDFKYAMARIKSPITKSDV 351
A++V+ A M + E+ KG+ D RP+T+ DF+ + R + + +
Sbjct: 323 ADIVREAYMATVRELFE-----------KGKVDGEPRPITMSDFQEILRRRRPSVDHRLL 371
Query: 352 KKYERWAKEFA 362
K YE W + FA
Sbjct: 372 KTYEEWTERFA 382
>dbj|BAB16447.1| (AP002483) putative AAA-type ATPase [Oryza sativa]
Length = 411
Score = 177 bits (445), Expect = 1e-43
Identities = 114/310 (36%), Positives = 170/310 (54%), Gaps = 39/310 (12%)
Query: 87 RSTITWNDIGGLREAKKLIAQAIGLSIA-----KSPIEPPQGILLFGPPGTGKSLLASAV 141
+ ++ W+D+ GL AK+ + +A L I P + LL+GPPGTGKS LA AV
Sbjct: 103 KPSVKWSDVAGLESAKEALQEAAILPIKFPHFFTGKRSPWKAFLLYGPPGTGKSYLAEAV 162
Query: 142 ANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR--VSL 199
A +++TFFS+ +SDL+SK+ GES KL++ LF +AR+ +PS+IFIDE+DSL +R +
Sbjct: 163 ATEVDSTFFSISSSDLVSKWMGESEKLVANLFQMARENAPSIIFIDEIDSLCGQRGECNE 222
Query: 200 DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAV 259
++A+RR+ LL +M GF DKV+VL ATN P LD+AM R IY+PLPD+ +
Sbjct: 223 NEASRRIKTELLVQMQGFDNSNDKVLVLAATNMPHVLDQAMRRRFDKCIYIPLPDLKARK 282
Query: 260 EIFKIHLRGIHYDVPLSRLAKEAVKRLY-----SGREIANVVKLATMKMLEEMN------ 308
+ FKIH+ D P S + V Y SG +IA VK A + + +
Sbjct: 283 DTFKIHIG----DTPHSLTEGDFVSLAYQTEGFSGSDIAVCVKDALFQPVRKTQDAKFFI 338
Query: 309 ---------PELSDPLRVST----LKGRDLTTR----PLTLDDFKYAMARIKSPITKSDV 351
E S P + T L + L + P++ DF + R + ++K D+
Sbjct: 339 KADDDTWTPSEQSQPGSIQTTMQELASKGLAAKILLPPISKIDFDEVLVRQRPTVSKKDL 398
Query: 352 KKYERWAKEF 361
YE++ +EF
Sbjct: 399 VVYEKFTQEF 408
>gb|AAD38581.1|AF145606_1 (AF145606) BcDNA.GH02678 [Drosophila melanogaster]
>gi|7293406|gb|AAF48783.1| (AE003507) BcDNA:GH02678 gene
product [Drosophila melanogaster]
Length = 442
Score = 177 bits (445), Expect = 1e-43
Identities = 121/351 (34%), Positives = 188/351 (53%), Gaps = 44/351 (12%)
Query: 55 EEAKKWEEKAKNVRKRREGKNEYFDKLKA------LIKRSTITWNDIGGLREAKKLIAQA 108
E + K ++ K+ +G + KL++ +I++ + W+D+ GL AK+ + +A
Sbjct: 88 ESSAKDDKDKKSDSDDEDGDDPEKKKLQSKLEDAIVIEKPKVQWSDVAGLDAAKEALKEA 147
Query: 109 IGLSIAKSPIE-----PPQGILLFGPPGTGKSLLASAVANSLN-ATFFSVKASDLLSKYF 162
+ L I + P +GILLFGPPGTGKS LA AVA N +TFFSV +SDL+SK+
Sbjct: 148 VILPIKFPQLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANRSTFFSVSSSDLMSKWL 207
Query: 163 GESSKLISALFSLARQLSPSVIFIDEVDSLTMKRV-SLDDAARRMIGTLLAEMDGFKERK 221
GES KL+ LF LARQ PS+IFIDE+DS+ R + +D+ RR+ L +M G
Sbjct: 208 GESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSDNENDSVRRIKTEFLVQMQGVGNDT 267
Query: 222 DKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKE 281
D ++VL ATN PW LD A+ R RIY+PLP+ ++ + +FKIHL + + L +
Sbjct: 268 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARLVMFKIHLGNTTHVLTEQDLKEL 327
Query: 282 AVK-RLYSGREIANVVKLATMKMLEEM----------------NPELSDPLRVSTLKGRD 324
A K YSG +I+ VV+ A M+ + ++ + E+ + L V G
Sbjct: 328 AGKTEGYSGADISIVVRDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQ 387
Query: 325 --------------LTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
L P+T+ D +++R K + + D+KK ++ ++F
Sbjct: 388 GAVEMNWMDVPSDKLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDF 438
>gb|AAF17203.1|AF112215_1 (AF112215) SKD1 protein [Homo sapiens]
Length = 437
Score = 177 bits (444), Expect = 2e-43
Identities = 122/325 (37%), Positives = 177/325 (53%), Gaps = 19/325 (5%)
Query: 2 YRLQLLQVQKCQEEFERALSL-GHYDKAR-LIALRCAELL---RKIASENLSLSHILLEE 56
Y L Q E F A+ H DKA+ I +C + L K+ S +
Sbjct: 25 YEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEEHGKKP 84
Query: 57 AKKWEEKAKNVRKRREGKNEYFDKLK------ALIKRSTITWNDIGGLREAKKLIAQAIG 110
K+ + + K EG N KL+ ++++ I WND+ GL AK+ + +A+
Sbjct: 85 VKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVI 144
Query: 111 LSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVANSLN-ATFFSVKASDLLSKYFGE 164
L I + P +GILLFGPPGTGKS LA AVA N +TFFSV +SDL+SK+ GE
Sbjct: 145 LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGE 204
Query: 165 SSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDAARRMIGTLLAEMDGFKERKDK 223
S KL+ LF LARQ PS+IFIDEVDSL R + +AARR+ L +M G D
Sbjct: 205 SEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDG 264
Query: 224 VIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAV 283
+VL ATN PW LD A+ R RIY+PLP+ + ++F++HL +++ + + + A
Sbjct: 265 TLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELAR 324
Query: 284 K-RLYSGREIANVVKLATMKMLEEM 307
K YSG +I+ +V+ + M+ + ++
Sbjct: 325 KTEGYSGADISIIVRDSLMQPVRKV 349
>gi|7019569 vacuolar sorting protein 4 [Homo sapiens]
>gi|5732691|gb|AAD49227.1|AF159063_1 (AF159063)
SKD1-homolog [Homo sapiens]
>gi|9885648|gb|AAG01470.1|AF282903_1 (AF282903) vacuolar
protein sorting factor 4A [Homo sapiens]
Length = 437
Score = 176 bits (443), Expect = 2e-43
Identities = 122/325 (37%), Positives = 177/325 (53%), Gaps = 19/325 (5%)
Query: 2 YRLQLLQVQKCQEEFERALSL-GHYDKAR-LIALRCAELL---RKIASENLSLSHILLEE 56
Y L Q E F A+ H DKA+ I +C + L K+ S +
Sbjct: 25 YEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKP 84
Query: 57 AKKWEEKAKNVRKRREGKNEYFDKLK------ALIKRSTITWNDIGGLREAKKLIAQAIG 110
K+ + + K EG N KL+ ++++ I WND+ GL AK+ + +A+
Sbjct: 85 VKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVI 144
Query: 111 LSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVANSLN-ATFFSVKASDLLSKYFGE 164
L I + P +GILLFGPPGTGKS LA AVA N +TFFSV +SDL+SK+ GE
Sbjct: 145 LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGE 204
Query: 165 SSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDAARRMIGTLLAEMDGFKERKDK 223
S KL+ LF LARQ PS+IFIDEVDSL R + +AARR+ L +M G D
Sbjct: 205 SEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDG 264
Query: 224 VIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAV 283
+VL ATN PW LD A+ R RIY+PLP+ + ++F++HL +++ + + + A
Sbjct: 265 TLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELAR 324
Query: 284 K-RLYSGREIANVVKLATMKMLEEM 307
K YSG +I+ +V+ + M+ + ++
Sbjct: 325 KTEGYSGADISIIVRDSLMQPVRKV 349
>gi|11430565 similar to vacuolar sorting protein 4 (H. sapiens) [Homo sapiens]
Length = 479
Score = 176 bits (443), Expect = 2e-43
Identities = 122/325 (37%), Positives = 177/325 (53%), Gaps = 19/325 (5%)
Query: 2 YRLQLLQVQKCQEEFERALSL-GHYDKAR-LIALRCAELL---RKIASENLSLSHILLEE 56
Y L Q E F A+ H DKA+ I +C + L K+ S +
Sbjct: 67 YEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKP 126
Query: 57 AKKWEEKAKNVRKRREGKNEYFDKLK------ALIKRSTITWNDIGGLREAKKLIAQAIG 110
K+ + + K EG N KL+ ++++ I WND+ GL AK+ + +A+
Sbjct: 127 VKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVI 186
Query: 111 LSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVANSLN-ATFFSVKASDLLSKYFGE 164
L I + P +GILLFGPPGTGKS LA AVA N +TFFSV +SDL+SK+ GE
Sbjct: 187 LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGE 246
Query: 165 SSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDAARRMIGTLLAEMDGFKERKDK 223
S KL+ LF LARQ PS+IFIDEVDSL R + +AARR+ L +M G D
Sbjct: 247 SEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDG 306
Query: 224 VIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAV 283
+VL ATN PW LD A+ R RIY+PLP+ + ++F++HL +++ + + + A
Sbjct: 307 TLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELAR 366
Query: 284 K-RLYSGREIANVVKLATMKMLEEM 307
K YSG +I+ +V+ + M+ + ++
Sbjct: 367 KTEGYSGADISIIVRDSLMQPVRKV 391
>sp|Q09803|SKD1_SCHPO SUPRESSOR PROTEIN OF BEM1/BED5 DOUBLE MUTANTS
>gi|2130392|pir||S62461 probable AAA-family ATPase,
supressor protein - fission yeast (Schizosaccharomyces
pombe) >gi|7492345|pir||T38572 probable AAA-family
ATPase - fission yeast (Schizosaccharomyces pombe)
>gi|496311|gb|AAA35347.1| (L33456) supressor protein
[Schizosaccharomyces pombe] >gi|1019404|emb|CAA91171.1|
(Z54354) putative AAA-family ATPase [Schizosaccharomyces
pombe]
Length = 432
Score = 176 bits (442), Expect = 3e-43
Identities = 109/310 (35%), Positives = 172/310 (55%), Gaps = 33/310 (10%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLA 138
L+++ + W+DI GL AK+ + + + L I + +P GILL+GPPGTGKS LA
Sbjct: 120 LVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPWSGILLYGPPGTGKSYLA 179
Query: 139 SAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS 198
AVA +TFFS+ +SDL+SK+ GES +L+ LF +AR+ PS+IFIDE+DSL R
Sbjct: 180 KAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSE 239
Query: 199 LDDAARRMIGT-LLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNS 257
+ + R I T L +M+G + + V+VL ATN PW LD A+ R RIY+PLP+ ++
Sbjct: 240 GESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHA 299
Query: 258 AVEIFKIHLRGIHYDVPLSRLAKEAVKRL--YSGREIANVVKLATMK------------- 302
+F++++ I ++ S+ KE K YSG +I+ VV+ A M+
Sbjct: 300 RARMFELNVGKIPSEL-TSQDFKELAKMTDGYSGSDISIVVRDAIMEPVRRIHTATHFKE 358
Query: 303 ---------MLEEMNPELSDPLRVSTLK--GRDLTTRPLTLDDFKYAMARIKSPITKSDV 351
++ +P D S L+ D+ LT+ DF A+ ++K + D+
Sbjct: 359 VYDNKSNRTLVTPCSPGDPDAFESSWLEVNPEDIMEPKLTVRDFYSAVRKVKPTLNAGDI 418
Query: 352 KKYERWAKEF 361
+K+ ++ K+F
Sbjct: 419 EKHTQFTKDF 428
>gb|AAD42971.1|AF155740_1 (AF155740) vacuolar sorting protein 4 [Homo sapiens]
Length = 432
Score = 175 bits (440), Expect = 6e-43
Identities = 121/325 (37%), Positives = 177/325 (54%), Gaps = 19/325 (5%)
Query: 2 YRLQLLQVQKCQEEFERALSL-GHYDKAR-LIALRCAELL---RKIASENLSLSHILLEE 56
Y L Q E F A+ H DKA+ I +C + L K+ S +
Sbjct: 20 YEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKP 79
Query: 57 AKKWEEKAKNVRKRREGKNEYFDKLK------ALIKRSTITWNDIGGLREAKKLIAQAIG 110
K+ + + K EG N KL+ ++++ I WND+ GL AK+ + +A+
Sbjct: 80 VKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVI 139
Query: 111 LSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVANSLN-ATFFSVKASDLLSKYFGE 164
L I + P +GILLFGPPGTGKS LA AVA N +TFFSV +SDL+SK+ GE
Sbjct: 140 LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGE 199
Query: 165 SSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDAARRMIGTLLAEMDGFKERKDK 223
S KL+ LF LARQ PS+IFIDEVDSL R + +AARR+ L +M G D
Sbjct: 200 SEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDG 259
Query: 224 VIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAV 283
+VL ATN PW LD A+ + RIY+PLP+ + ++F++HL +++ + + + A
Sbjct: 260 TLVLGATNIPWVLDSAIRRKFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELAR 319
Query: 284 K-RLYSGREIANVVKLATMKMLEEM 307
K YSG +I+ +V+ + M+ + ++
Sbjct: 320 KTEGYSGADISIIVRDSLMQPVRKV 344
>gb|AAC73040.1| (AC005824) putative AAA-type ATPase [Arabidopsis thaliana]
Length = 435
Score = 175 bits (439), Expect = 7e-43
Identities = 111/329 (33%), Positives = 179/329 (53%), Gaps = 39/329 (11%)
Query: 71 REGKNEYFDKLKALI------KRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----E 119
++G++ KL+A + ++ I W+D+ GL AK+ + +A+ L +
Sbjct: 104 KDGEDPEQSKLRAGLNSAIVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRR 163
Query: 120 PPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQL 179
P + LL+GPPGTGKS LA AVA ++TFFSV +SDL+SK+ GES KL+S LF +AR+
Sbjct: 164 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARES 223
Query: 180 SPSVIFIDEVDSL--TMKRVSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLD 237
+PS+IF+DE+DSL T + +A+RR+ LL +M G +KV+VL ATN P+ LD
Sbjct: 224 APSIIFVDEIDSLCGTRGEGNESEASRRIKTELLVQMQGVGHNDEKVLVLAATNTPYALD 283
Query: 238 EAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVK-RLYSGREIANVV 296
+A+ R RIY+PLP+ + +FK+HL +++ K +SG +++ V
Sbjct: 284 QAIRRRFDKRIYIPLPEAKARQHMFKVHLGDTPHNLTEPDFEYLGQKTEGFSGSDVSVCV 343
Query: 297 KLATMKMLEEMNPEL---------------SDPLRVSTLKGRDLTTR---------PLTL 332
K + + + + P + T +DL T+ P+T
Sbjct: 344 KDVLFEPVRKTQDAMFFFKSPDGTWMPCGPRHPGAIQTTM-QDLATKGLAEKIIPPPITR 402
Query: 333 DDFKYAMARIKSPITKSDVKKYERWAKEF 361
DF+ +AR + ++KSD+ +ER+ +EF
Sbjct: 403 TDFEKVLARQRPTVSKSDLDVHERFTQEF 431
>gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 769
Score = 174 bits (436), Expect = 2e-42
Identities = 111/296 (37%), Positives = 163/296 (54%), Gaps = 31/296 (10%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVAN 143
+ W DIGGL EAK+ + +A+ + K I PP+GILLFGPPGTGK++LA AVA
Sbjct: 473 VKWEDIGGLEEAKQQLREAVEWPLKFPEMFEKLGIRPPKGILLFGPPGTGKTMLAKAVAT 532
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDA- 202
A F +V+ ++LSK+ GES K + +F ARQ +P VIF DE+DS+ R D+
Sbjct: 533 ESGANFIAVRGPEILSKWVGESEKAVREIFRRARQTAPCVIFFDEIDSIAPMRGFTHDSG 592
Query: 203 -ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAV 259
R++ LL+EMDG + ++V+V+ ATN P LD A+L R IYVP PD + +
Sbjct: 593 VTERIVNQLLSEMDGI-QSLNRVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARI 651
Query: 260 EIFKIHLRGIHYD--VPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE----------- 306
EI KI+ R + D V L LAK+ Y+G +I + + TMK+L +
Sbjct: 652 EILKIYTRTLPIDSSVNLEELAKKL--EGYTGADIEALARETTMKVLRQKYYDCLNKAKK 709
Query: 307 --MNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKE 360
+ E +D S + ++ +T+ DF M + +TK+D+ +YE KE
Sbjct: 710 ECKDQECTDKTIKSCMSNLEI---KITMQDFLDTMKIVTPSLTKADIMRYENMVKE 762
Score = 147 bits (367), Expect = 2e-34
Identities = 92/270 (34%), Positives = 148/270 (54%), Gaps = 14/270 (5%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+TW DIG L + K+ I + + L + IEPP+G+LL+GPPG GK+LLA A+AN
Sbjct: 198 VTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKGVLLYGPPGVGKTLLARALAN 257
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
+ A F S+ +++SK++GES + + +F A + SP++IFIDE+D++ KR + +
Sbjct: 258 EIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNSPAIIFIDEIDAIAPKREEVTGEV 317
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVE 260
+R++ LL MDG K R KVIV+ ATN P +D A+ R I + PD + E
Sbjct: 318 EKRVVAQLLTLMDGIKGR-GKVIVIGATNRPDAVDPALRRPGRFDREIEIRPPDAKARKE 376
Query: 261 IFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I ++H R + DV L +++++ Y+G ++A + + A M L E L
Sbjct: 377 ILQVHTRNMPLAEDVDLDKISEQT--HGYTGADLAALAREAAMNALRRFINERKINLEQE 434
Query: 319 TLKGRDLTTRPLTLDDFKYAMARIKSPITK 348
+ L +T+ DF AM I+ + +
Sbjct: 435 QIPVDVLKELKVTMQDFIDAMKFIQPTLLR 464
>gb|AAF76434.1|AC015445_1 (AC015445) Contains similarity to p60 katanin from Chlamydomonas
reinhardtii gb|AF205377 and contains an AAA domain
PF|00004. [Arabidopsis thaliana]
Length = 627
Score = 174 bits (436), Expect = 2e-42
Identities = 111/323 (34%), Positives = 173/323 (53%), Gaps = 22/323 (6%)
Query: 53 LLEEAKKWEEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLS 112
L + + K + KN+ K +N F + + DIG L + KK + + + L
Sbjct: 300 LEDNSLKPSQNLKNIAKDEYERN--FVSAVVAPGEIGVKFEDIGALEDVKKALNELVILP 357
Query: 113 IAKSPI-------EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGES 165
+ + + P +GILLFGPPGTGK+LLA A+A A F S+ S L SK+FG++
Sbjct: 358 MRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDA 417
Query: 166 SKLISALFSLARQLSPSVIFIDEVDSLTMKR--VSLDDAARRMIGTLLAEMDGFKER-KD 222
KL ALFS A +L+P +IF+DE+DSL R S +A RRM +A DG + +
Sbjct: 418 EKLTKALFSFATKLAPVIIFVDEIDSLLGARGGSSEHEATRRMRNEFMAAWDGLRSKDSQ 477
Query: 223 KVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHL--RGIHYDVPLSRLAK 280
++++L ATN P+DLD+A++ RLP RIYV LPD + ++I KI L + D +LAK
Sbjct: 478 RILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRLKILKIFLTPENLESDFQFEKLAK 537
Query: 281 EAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMA 340
E YSG ++ N+ A + ++E+ E R G R L+LDDF + A
Sbjct: 538 ET--EGYSGSDLKNLCIAAAYRPVQELLQEEQKGARAEASPG----LRSLSLDDFIQSKA 591
Query: 341 RIKSPIT--KSDVKKYERWAKEF 361
++ + + + + +W +++
Sbjct: 592 KVSPSVAYDATTMNELRKWNEQY 614
>gb|AAK40524.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 769
Score = 173 bits (435), Expect = 2e-42
Identities = 107/295 (36%), Positives = 169/295 (57%), Gaps = 27/295 (9%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVAN 143
+ W DIGGL E K+ + + + + S IEPP+GILLFGPPGTGK++LA AVA
Sbjct: 462 VKWTDIGGLEEIKEELKEVVEYPLKYSELYQNSGIEPPKGILLFGPPGTGKTMLAKAVAT 521
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLT-MKRVSLDD- 201
A F +V+ ++LSK+ GES K + +F AR +P+VIF DE+DS+ ++ +S D
Sbjct: 522 ESGANFIAVRGPEILSKWVGESEKAVREIFRKARMYAPAVIFFDEIDSIAPIRGISYDSG 581
Query: 202 AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAV 259
R++ LLAEMDG E+ + V+V+ ATN P LD A+L R IYVP PD +
Sbjct: 582 VTERIVNQLLAEMDGI-EKLENVVVIAATNRPDILDPALLRPGRFEKLIYVPPPDKRART 640
Query: 260 EIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMN----PELSD 313
EI K+H R I D+ L +A++ Y+G ++A +V+ ATM+ + E + ++
Sbjct: 641 EILKVHTRNIALGEDISLEDVAEKT--EGYTGADLAALVREATMRAIRESMKICIDKTNE 698
Query: 314 PLRVSTLKGRDLTTR--------PLTLDDFKYAMARIKSPITKSDVKKYERWAKE 360
+ + + RD T + ++L F+ AM ++K +T+ ++ Y+ W ++
Sbjct: 699 NCKPTDAECRDKTMKECMKVNGVKVSLRHFEEAMRKVKPSVTQDMLQFYQNWVEK 753
Score = 149 bits (373), Expect = 4e-35
Identities = 90/264 (34%), Positives = 150/264 (56%), Gaps = 16/264 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVAN 143
+T+ DIGG++ + + + + L + + IEPP+GILL+GPPG GK+LLA A+AN
Sbjct: 189 VTYEDIGGMKNIIEKVRELVELPLRHPELFKRLGIEPPKGILLYGPPGVGKTLLAKAIAN 248
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS-LDDA 202
+A F S+ +++SK++GES + + +F A++ +P++IF+DE+D++ KR + +
Sbjct: 249 ETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFVDEIDAIAPKRDEVIGEV 308
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG E + VIV+ ATN P +D A+ R I +PLPD +E
Sbjct: 309 ERRVVAQLLTLMDGL-ENRGNVIVIAATNRPSAVDPALRRPGRFDREIEIPLPDKQGRLE 367
Query: 261 IFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH R + DV L +LA + Y+G +++ +V+ A M L P++ L
Sbjct: 368 ILQIHTRNMPLSKDVDLEKLAD--MTHGYTGADLSALVREAAMNSLRRYLPKID--LNQD 423
Query: 319 TLKGRDLTTRPLTLDDFKYAMARI 342
+ L + + ++DF A I
Sbjct: 424 KIPPEILESMEVKMEDFINAFKEI 447
>dbj|BAA87866.1| (AB018433) Pk-cdcA [Pyrococcus kodakaraensis]
Length = 835
Score = 173 bits (435), Expect = 2e-42
Identities = 123/350 (35%), Positives = 189/350 (53%), Gaps = 33/350 (9%)
Query: 26 DKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLK--- 82
D A L +LR++ E I E+ + E + +R RR+ ++++ LK
Sbjct: 475 DLAALAREAAMVVLRRLIKEG----KISPEQERIPPEVLQELRVRRD---DFYEALKMVE 527
Query: 83 ------ALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPP 130
LI+ + W DIGGL + K+ + +A+ + + IEPP+GILL+GPP
Sbjct: 528 PSALREVLIEVPNVRWEDIGGLEDVKQELREAVEWPLKYPKAFERLGIEPPKGILLYGPP 587
Query: 131 GTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVD 190
GTGK+LLA AVAN A F +++ ++LSK+ GE+ K I +F ARQ +P+V+FIDE+D
Sbjct: 588 GTGKTLLAKAVANESQANFIAIRGPEVLSKWVGETEKRIREIFRKARQAAPTVVFIDEID 647
Query: 191 SLTMKRVSLDD-AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIR 247
++ R S D R+I LL EMDG +E V+V+ ATN P +D A+L R
Sbjct: 648 AIAPARGSEGDRVTDRLINQLLTEMDGIQENSG-VVVIGATNRPDIIDPALLRPGRFDRL 706
Query: 248 IYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLE 305
I VP PD + +EIFK+H R + DV L LAK+ Y+G +IA +V+ A + +
Sbjct: 707 ILVPAPDEKARLEIFKVHTRRVPLAGDVDLRELAKKT--EGYTGADIAALVREAALIAMR 764
Query: 306 EMNPELSDPLRVSTLKGRDLTTR-PLTLDDFKYAMARIKSPITKSDVKKY 354
+ EL P V + + R ++ DF+ AM ++K +T ++ Y
Sbjct: 765 RIMREL--PREVVESESEEFLERLKVSKKDFEMAMKKVKPSVTPYMMEYY 812
Score = 146 bits (364), Expect = 5e-34
Identities = 87/207 (42%), Positives = 126/207 (60%), Gaps = 15/207 (7%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVA 142
+T+ DIGGL +A + I + + L + K P IEPP+G+LL+GPPGTGK+LLA AVA
Sbjct: 206 VTYEDIGGLSDAIQKIREMVELPL-KHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVA 264
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS-LDD 201
N NA F ++ +++SK++GES + + +F A + +PS+IFIDE+D++ KR + +
Sbjct: 265 NEANAHFIAINGPEIMSKFYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVVGE 324
Query: 202 AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAV 259
+R++ LL MDG K R KVIV+ ATN P LD A+ R I V +PD
Sbjct: 325 VEKRVVSQLLTLMDGLKSR-GKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRK 383
Query: 260 EIFKIHLRGIHYDVPLSRLAKEAVKRL 286
EI +IH RG+ + KEAV R+
Sbjct: 384 EILQIHTRGMPLEPDYD---KEAVLRV 407
>gi|6325183 Yta6p [Saccharomyces cerevisiae] >gi|2133218|pir||S61113 YTA6
protein - yeast (Saccharomyces cerevisiae)
>gi|1147619|gb|AAB68264.1| (U41849) Yta6p [Saccharomyces
cerevisiae]
Length = 754
Score = 173 bits (434), Expect = 3e-42
Identities = 106/300 (35%), Positives = 165/300 (54%), Gaps = 34/300 (11%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLA 138
L+ + W DI GLR AK + +A+ + + EP +G+LLFGPPGTGK+++A
Sbjct: 462 LVTDEKVYWEDIAGLRNAKNSLKEAVVYPFLRPDLFKGLREPVRGMLLFGPPGTGKTMIA 521
Query: 139 SAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDS-LTMKRV 197
AVA N+TFFSV AS LLSKY GES KL+ ALF +A++LSPS+IFIDE+DS LT +
Sbjct: 522 KAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSD 581
Query: 198 SLDDAARRMIGTLLAEMDGFKER-----------KDKVIVLTATNAPWDLDEAMLSRLPI 246
+ ++++RR+ LL + +V+VL ATN PW +D+A R
Sbjct: 582 NENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARRRFSR 641
Query: 247 RIYVPLPDVNSAVEIFKIHLRGI--HYDVPLSRLAKEAVKRL---YSGREIANVVKLATM 301
++Y+PLPD + + HL+ + L L E + + +SG ++ ++ K A M
Sbjct: 642 KLYIPLPDYETRL----YHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAM 697
Query: 302 KMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
+ + +L D L + R + + DF+ A+ IK ++ ++KYE W+ +F
Sbjct: 698 EPIR----DLGDKLMFADFD----KIRGIEIKDFQNALLTIKKSVSSESLQKYEEWSSKF 749
>dbj|BAB01094.1| (AB026649) gene_id:MOJ10.20~unknown protein [Arabidopsis thaliana]
Length = 694
Score = 173 bits (433), Expect = 4e-42
Identities = 110/321 (34%), Positives = 172/321 (53%), Gaps = 42/321 (13%)
Query: 62 EKAKNVRKR--REGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI- 118
EK +N+ R NE D+ + W+DI GL AKK + + + + + I
Sbjct: 390 EKLRNLEPRLIEHVSNEIMDR------DPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIF 443
Query: 119 ----EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFS 174
P +G+LLFGPPGTGK+++ A+A ATFF + AS L SK+ GE KL+ ALF
Sbjct: 444 KGCRSPGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFG 503
Query: 175 LARQLSPSVIFIDEVDSLTMKRVS--LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNA 232
+A P+VIF+DE+DSL +R S +++RR+ L EM+GF ++++++ ATN
Sbjct: 504 VASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNR 563
Query: 233 PWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRL------ 286
P +LDEA RL R+Y+PLP + I + L+ L L+ + + +
Sbjct: 564 PQELDEAARRRLTKRLYIPLPSSEARAWIIQNLLK----KDGLFTLSDDDMNIICNLTEG 619
Query: 287 YSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTT------RPLTLDDFKYAMA 340
YSG ++ N+VK ATM PLR + +G D+T R +TL DFK A+
Sbjct: 620 YSGSDMKNLVKDATM-----------GPLREALKRGIDITNLTKDDMRLVTLQDFKDALQ 668
Query: 341 RIKSPITKSDVKKYERWAKEF 361
++ ++++++ YE W +F
Sbjct: 669 EVRPSVSQNELGIYENWNNQF 689
>pir||D75046 transitional endoplasmic reticulum atpase PAB1478 - Pyrococcus
abyssi (strain Orsay) >gi|5458778|emb|CAB50265.1|
(AJ248287) TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
[Pyrococcus abyssi]
Length = 840
Score = 172 bits (432), Expect = 5e-42
Identities = 109/288 (37%), Positives = 163/288 (55%), Gaps = 16/288 (5%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ LI+ + W+DIGGL + K+ + +A+ + + I PP+G+LL+GPPGTGK+
Sbjct: 536 EVLIEVPNVHWDDIGGLEDVKQELREAVEWPLKYPKAFKRLGITPPKGVLLYGPPGTGKT 595
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA AVA A F +++ ++LSK+ GES K I +F ARQ SP++IFIDE+D++
Sbjct: 596 LLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKARQASPAIIFIDEIDAIAPA 655
Query: 196 RVSL--DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVP 251
R + + R+I LL EMDG E V+V+ ATN P LD A+L R I VP
Sbjct: 656 RGTAEGEKVTDRIINQLLTEMDGLVENSG-VVVIAATNRPDILDPALLRPGRFDRLILVP 714
Query: 252 LPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNP 309
PD + EIFK+H RG+ DV L LA+ Y+G +IA V + A M L
Sbjct: 715 APDEKARFEIFKVHTRGMPLADDVDLKELARRT--EGYTGADIAAVCREAAMNALRRAVA 772
Query: 310 ELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERW 357
+LS P + + L + +T DF+ A+ ++K +TK ++ Y ++
Sbjct: 773 KLS-PEELEEESEKFLKSLIVTRKDFEVALKKVKPSVTKYMMEYYRQF 819
Score = 148 bits (370), Expect = 9e-35
Identities = 93/243 (38%), Positives = 141/243 (57%), Gaps = 21/243 (8%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVA 142
+T+ DIGGL+EA + I + + L + K P IEPP+G+LL+GPPGTGK+LLA AVA
Sbjct: 209 VTYEDIGGLKEAIEKIREMVELPL-KHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVA 267
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS-LDD 201
N NA F ++ +++SKY+GES + + +F A + +P++IFIDE+D++ KR + +
Sbjct: 268 NEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGE 327
Query: 202 AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAV 259
+R++ LL MDG K R KVIV+ ATN P LD A+ R I V +PD
Sbjct: 328 VEKRVVSQLLTLMDGLKSR-GKVIVIAATNRPDALDPALRRPGRFDREIEVGVPDKQGRK 386
Query: 260 EIFKIHLRGIHYDVPLSR-LAKEAVKRL-----YSGREIANVVKLATMKMLEEMNPELSD 313
EI +IH RG+ + + +A+K L + +I +++ + EE E+ D
Sbjct: 387 EILQIHTRGMPIEPDFEKETVIKALKELEKDDRFDKEKIKKIIEKVSKAKSEE---EIKD 443
Query: 314 PLR 316
LR
Sbjct: 444 ILR 446
>pir||D72613 probable transitional endoplasmic reticulum ATPase APE1367 -
Aeropyrum pernix (strain K1) >gi|5105048|dbj|BAA80362.1|
(AP000061) 726aa long hypothetical transitional
endoplasmic reticulum ATPase [Aeropyrum pernix]
Length = 726
Score = 172 bits (432), Expect = 5e-42
Identities = 109/284 (38%), Positives = 159/284 (55%), Gaps = 33/284 (11%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVAN 143
+ W+DIGGL EAK+ + +A+ + K I PP+G+LLFGPPGTGK+LLA AVA
Sbjct: 456 VRWSDIGGLEEAKQALREAVEWPLKHPEIFEKMGIRPPRGVLLFGPPGTGKTLLAKAVAT 515
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAA 203
A F +V+ ++LSK+ GES + I +F ARQ +P+V+F DE+D++ R + D +
Sbjct: 516 ESGANFIAVRGPEILSKWVGESERAIRKIFERARQAAPAVVFFDEIDAIAPARGARFDTS 575
Query: 204 ---RRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSA 258
R++ +LAEMDG + + V+V+ ATN P LD A+L R IYVP PD +
Sbjct: 576 GVTDRIVNQMLAEMDGIQPLSN-VVVIGATNRPDILDPALLRPGRFDRLIYVPPPDKEAR 634
Query: 259 VEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLR 316
EIFKIH + + DV L +LA+ + Y+G +I VV+ A M L E
Sbjct: 635 KEIFKIHTKKVPLGEDVDLEKLAE--MTEGYTGADIEAVVREAVMAKLRE---------- 682
Query: 317 VSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKE 360
L + + F A+ ++ +TK D+ +YER AKE
Sbjct: 683 -------KLEVGKVEMRHFLEALKKVPPSLTKEDILRYERLAKE 719
Score = 167 bits (418), Expect = 2e-40
Identities = 108/298 (36%), Positives = 164/298 (54%), Gaps = 19/298 (6%)
Query: 63 KAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP----- 117
+A V R + E ++L+ + K +TW DIG L EAK+ I + + L + K P
Sbjct: 157 EATEVEIREKPVREEIERLRGVPK---VTWEDIGDLEEAKERIREIVELPM-KHPEIFKH 212
Query: 118 --IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSL 175
IEPP+GILL+GPPGTGK+LLA A+AN + A F S+ +++SKY+GES + + +F
Sbjct: 213 LGIEPPKGILLYGPPGTGKTLLAKALANEIGAYFISINGPEIMSKYYGESEQRLREIFKE 272
Query: 176 ARQLSPSVIFIDEVDSLTMKRVSL-DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPW 234
A + +PS+IFIDE+D++ KR + + +R++ LL MDG KER +VIV+ ATN P
Sbjct: 273 AEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKER-GRVIVIGATNRPD 331
Query: 235 DLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGR 290
+D A+ R I + PD + EI K+H R + DV L +LA+ + Y+G
Sbjct: 332 AIDPALRRPGRFDREIEIRPPDKRARAEILKVHTRNMPLAEDVDLDKLAE--MTHGYTGA 389
Query: 291 EIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITK 348
++A + K A M L E + L +T+ DF AM I+ + +
Sbjct: 390 DLAALAKEAAMAALRRFIREGKINFEAKEIPATVLKELKVTMKDFMEAMKMIRPTLIR 447
>gi|6320887 member of the AAA ATPase family of proteins; Sap1p [Saccharomyces
cerevisiae] >gi|731461|sp|P39955|SAP1_YEAST SAP1 PROTEIN
>gi|1077655|pir||S50550 SIN1-associated protein SAP1 -
yeast (Saccharomyces cerevisiae)
>gi|603280|gb|AAB64582.1| (U18796) Yer047cp
[Saccharomyces cerevisiae]
Length = 897
Score = 171 bits (430), Expect = 8e-42
Identities = 108/320 (33%), Positives = 169/320 (52%), Gaps = 41/320 (12%)
Query: 71 REGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGIL 125
R+ + F ++ ++ + W+DI GL AK + +A+ + + EP +G+L
Sbjct: 585 RQAAKQIFAEI--VVHGDEVHWDDIAGLESAKYSLKEAVVYPFLRPDLFRGLREPVRGML 642
Query: 126 LFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIF 185
LFGPPGTGK++LA AVA ++TFFS+ AS L SKY GES KL+ ALF++A++LSPS+IF
Sbjct: 643 LFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLGESEKLVRALFAIAKKLSPSIIF 702
Query: 186 IDEVDSLTMKR--VSLDDAARRMIGTLLAEMDGFK-------------------ERKDKV 224
+DE+DS+ R + ++++RR+ L + E +V
Sbjct: 703 VDEIDSIMGSRNNENENESSRRIKNEFLVQWSSLSSAAAGSNKSNTNNSDTNGDEDDTRV 762
Query: 225 IVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFK---IHLRGIHYDVPLSRLAKE 281
+VL ATN PW +DEA R R Y+PLP+ + FK H + + L K
Sbjct: 763 LVLAATNLPWSIDEAARRRFVRRQYIPLPEDQTRHVQFKKLLSHQKHTLTESDFDELVK- 821
Query: 282 AVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMAR 341
+ YSG +I ++ K A M L ++ +L + R RP+ L DFK ++
Sbjct: 822 -ITEGYSGSDITSLAKDAAMGPLRDLGDKLLETERE--------MIRPIGLVDFKNSLVY 872
Query: 342 IKSPITKSDVKKYERWAKEF 361
IK +++ + KYE+WA +F
Sbjct: 873 IKPSVSQDGLVKYEKWASQF 892
>emb|CAB60143.1| (AJ246002) spastin protein orthologue [Mus musculus]
Length = 504
Score = 171 bits (429), Expect = 1e-41
Identities = 113/313 (36%), Positives = 173/313 (55%), Gaps = 27/313 (8%)
Query: 67 VRKRREGKN--EYFDKLKALIKR------STITWNDIGGLREAKKLIAQAIGLSIAKSPI 118
VRK+++ KN L LI + + ++DI G AK+ + + + L + +
Sbjct: 196 VRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQELAKQALQEIVILPSLRPEL 255
Query: 119 -----EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALF 173
P +G+LLFGPPG GK++LA AVA NATFF++ A+ L SKY GE KL+ ALF
Sbjct: 256 FTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALF 315
Query: 174 SLARQLSPSVIFIDEVDSLTM-KRVSLDDAARRMIGTLLAEMDGFKER-KDKVIVLTATN 231
++AR+L PS+IFIDEVDSL +R DA+RR+ L E DG + D+V+V+ ATN
Sbjct: 316 AVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 375
Query: 232 APWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRL---YS 288
P +LDEA+L R R+YV LP+ + + + K L PL++ + R+ YS
Sbjct: 376 RPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLL--CKQGSPLTQKELAQLARMTDGYS 433
Query: 289 GREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITK 348
G ++ + K A + + E+ PE + S + R + L DF ++ +IK ++
Sbjct: 434 GSDLTALAKDAALGPIRELKPEQVKNMSASEM-------RNIRLSDFTESLKKIKRSVSP 486
Query: 349 SDVKKYERWAKEF 361
++ Y RW K+F
Sbjct: 487 QTLEAYIRWNKDF 499
>gi|7662478 spastin [Homo sapiens] >gi|5689503|dbj|BAA83035.1| (AB029006)
KIAA1083 protein [Homo sapiens]
Length = 584
Score = 170 bits (426), Expect = 2e-41
Identities = 105/284 (36%), Positives = 162/284 (56%), Gaps = 19/284 (6%)
Query: 88 STITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVA 142
+ + ++DI G AK+ + + + L + + P +G+LLFGPPG GK++LA AVA
Sbjct: 305 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVA 364
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTM-KRVSLDD 201
NATFF++ A+ L SKY GE KL+ ALF++AR+L PS+IFIDEVDSL +R D
Sbjct: 365 AESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHD 424
Query: 202 AARRMIGTLLAEMDGFKER-KDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVE 260
A+RR+ L E DG + D+V+V+ ATN P +LDEA+L R R+YV LP+ + +
Sbjct: 425 ASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 484
Query: 261 IFKIHLRGIHYDVPLSRLAKEAVKRL---YSGREIANVVKLATMKMLEEMNPELSDPLRV 317
+ K L PL++ + R+ YSG ++ + K A + + E+ PE +
Sbjct: 485 LLKNLL--CKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSA 542
Query: 318 STLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
S + R + L DF ++ +IK ++ ++ Y RW K+F
Sbjct: 543 SEM-------RNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDF 579
>emb|CAB60141.1| (AJ246001) spastin protein [Homo sapiens]
>gi|6273493|emb|CAB60208.1| (AJ246003) spastin protein
[Homo sapiens]
Length = 616
Score = 170 bits (426), Expect = 2e-41
Identities = 105/284 (36%), Positives = 162/284 (56%), Gaps = 19/284 (6%)
Query: 88 STITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVA 142
+ + ++DI G AK+ + + + L + + P +G+LLFGPPG GK++LA AVA
Sbjct: 337 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVA 396
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTM-KRVSLDD 201
NATFF++ A+ L SKY GE KL+ ALF++AR+L PS+IFIDEVDSL +R D
Sbjct: 397 AESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHD 456
Query: 202 AARRMIGTLLAEMDGFKER-KDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVE 260
A+RR+ L E DG + D+V+V+ ATN P +LDEA+L R R+YV LP+ + +
Sbjct: 457 ASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 516
Query: 261 IFKIHLRGIHYDVPLSRLAKEAVKRL---YSGREIANVVKLATMKMLEEMNPELSDPLRV 317
+ K L PL++ + R+ YSG ++ + K A + + E+ PE +
Sbjct: 517 LLKNLL--CKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSA 574
Query: 318 STLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
S + R + L DF ++ +IK ++ ++ Y RW K+F
Sbjct: 575 SEM-------RNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDF 611
>pir||F75154 cell division control protein 48, aaa family (cdc48-1) PAB2086 -
Pyrococcus abyssi (strain Orsay)
>gi|5457827|emb|CAB49317.1| (AJ248284) CELL DIVISION
CONTROL PROTEIN 48, AAA FAMILY (CDC48-1) [Pyrococcus
abyssi]
Length = 795
Score = 169 bits (424), Expect = 4e-41
Identities = 111/294 (37%), Positives = 168/294 (56%), Gaps = 22/294 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGK 134
+ LI+ + W+DIGGL + K+ + +A+ + K P I PP+GILL+GPPGTGK
Sbjct: 505 EVLIEVPNVHWDDIGGLEDVKQELREAVEWPL-KYPEAFKAYGITPPKGILLYGPPGTGK 563
Query: 135 SLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTM 194
+LLA AVA A F +V+ ++LSK+ GES K I +F ARQ +P+VIFIDE+D++
Sbjct: 564 TLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAP 623
Query: 195 KR-VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVP 251
+R ++ R+I LL EMDG +E V+V+ ATN P LD A+L R I VP
Sbjct: 624 RRGTDVNRVTDRIINQLLTEMDGIQENAG-VVVIAATNRPDILDPALLRPGRFDRLILVP 682
Query: 252 LPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATM-KMLEEMN 308
PD + EIFK+H RG+ DV L LA+ Y+G +IA V + A M M +
Sbjct: 683 APDEKARFEIFKVHTRGMPLADDVDLKELARRT--EGYTGADIAAVCREAAMIAMRRALE 740
Query: 309 PELSDP-LRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
+ P ++ S ++ +T+ DF+ A+ +I ++K ++ Y + ++F
Sbjct: 741 KGIIKPGMKASEIR----RLAKVTMKDFEEALRKIGPSVSKETMEYYRKIQEQF 790
Score = 147 bits (367), Expect = 2e-34
Identities = 92/239 (38%), Positives = 140/239 (58%), Gaps = 15/239 (6%)
Query: 81 LKALIKRST--ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGT 132
+K + KR T +T+ DIGGL++ + I + I L + K IEPP+G+LL+GPPGT
Sbjct: 168 VKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGT 227
Query: 133 GKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSL 192
GK+LLA AVAN NA F ++ +++SKY+GES + + +F A + +P++IFIDE+D++
Sbjct: 228 GKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAI 287
Query: 193 TMKRVSL-DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
KR + + +R++ LLA MDG K R KVIV+ ATN P +D A+ R I
Sbjct: 288 APKRSEVTGEVEKRVVAQLLALMDGLKSR-GKVIVIGATNRPDAIDPALRRPGRFDREIE 346
Query: 250 VPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMN 308
V +PD EI +IH RG+ + + + +K L + K+ K +EE+N
Sbjct: 347 VGVPDRQGRKEILQIHTRGMPIEPDFRK--DDVLKILEDFKREGKFTKIID-KAIEEVN 402
>gb|AAC26698.1| (AC004077) putative katanin [Arabidopsis thaliana]
Length = 393
Score = 169 bits (424), Expect = 4e-41
Identities = 102/234 (43%), Positives = 138/234 (58%), Gaps = 11/234 (4%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
I W I GL AKKL+ +A+ + I K P + P +GILLFGPPGTGK++LA AVA
Sbjct: 109 IKWESIKGLENAKKLLKEAVVMPI-KYPTYFNGLLTPWKGILLFGPPGTGKTMLAKAVAT 167
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR----VSL 199
N TFF++ AS ++SK+ G+S KLI LF LAR +PS IF+DE+D++ +R S
Sbjct: 168 ECNTTFFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAIISQRGGEGRSE 227
Query: 200 DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAV 259
+A+RR+ LL +MDG ++ + V VL ATN PW+LD AML RL RI VPLPD +
Sbjct: 228 HEASRRLKTELLIQMDGLQKTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPDPEARR 287
Query: 260 EIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSD 313
+F++ + D PL YSG +I + K A M+ L L D
Sbjct: 288 GMFEMLIPSQPGDEPLPHDVLVEKSEGYSGSDIRILCKEAAMQPLRRTLAILED 341
>gb|AAD47570.1|AF134119_1 (AF134119) SKD1 [Mus musculus]
Length = 444
Score = 169 bits (423), Expect = 5e-41
Identities = 112/311 (36%), Positives = 166/311 (53%), Gaps = 29/311 (9%)
Query: 11 KCQEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKR 70
KC E +RA L Y K + E + E++ +EK +
Sbjct: 61 KCTEYLDRAEKLKEYLKKK---------------EKKPQKPVKEEQSGPVDEKGNDSDGE 105
Query: 71 REGKNEYFDKLK------ALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----E 119
E + KL+ +I+R + W+D+ GL AK+ + +A+ L I +
Sbjct: 106 AESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT 165
Query: 120 PPQGILLFGPPGTGKSLLASAVANSLN-ATFFSVKASDLLSKYFGESSKLISALFSLARQ 178
P +GILLFGPPGTGKS LA AVA N +TFFS+ +SDL+SK+ GES KL+ LF LAR+
Sbjct: 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 225
Query: 179 LSPSVIFIDEVDSLTMKRVSLD-DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLD 237
PS+IFIDE+DSL R + +AARR+ L +M G D ++VL ATN PW LD
Sbjct: 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285
Query: 238 EAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKR-LYSGREIANVV 296
A+ R RIY+PLP+ ++ +F++HL + + + K YSG +I+ +V
Sbjct: 286 SAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV 345
Query: 297 KLATMKMLEEM 307
+ A M+ + ++
Sbjct: 346 RDALMQPVRKV 356
>gi|11425184 suppressor of K+ transport defect 1 [Homo sapiens]
>gi|9885650|gb|AAG01471.1|AF282904_1 (AF282904) vacuolar
protein sorting factor 4B [Homo sapiens]
>gi|11225485|gb|AAG33022.1|AF195514_1 (AF195514) VPS4-2
ATPase [Homo sapiens]
Length = 444
Score = 168 bits (421), Expect = 9e-41
Identities = 122/388 (31%), Positives = 194/388 (49%), Gaps = 60/388 (15%)
Query: 34 RCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRR--------------EGKNEYFD 79
+ + +R +E L + L E K E+KA+ K EG+++ +
Sbjct: 53 KAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADEKGNDSDGEGESDDPE 112
Query: 80 KLKA--------LIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILL 126
K K +I+R + W+D+ GL AK+ + +A+ L I + P +GILL
Sbjct: 113 KKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILL 172
Query: 127 FGPPGTGKSLLASAVANSLN-ATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIF 185
FGPPGTGKS LA AVA N +TFFS+ +SDL+SK+ GES KL+ LF LAR+ PS+IF
Sbjct: 173 FGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIF 232
Query: 186 IDEVDSLTMKRVSLD-DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRL 244
IDE+DSL R + +AARR+ L +M G D ++VL ATN PW LD A+ R
Sbjct: 233 IDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF 292
Query: 245 PIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKR-LYSGREIANVVKLATMKM 303
RIY+PLP+ ++ +FK+HL + + + K YSG +I+ +V+ A M+
Sbjct: 293 EKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQP 352
Query: 304 LEEM----------NPELSDP--------------------LRVSTLKGRDLTTRPLTLD 333
+ ++ P +DP + + G L +++
Sbjct: 353 VRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMS 412
Query: 334 DFKYAMARIKSPITKSDVKKYERWAKEF 361
D +++ K + + D+ K +++ ++F
Sbjct: 413 DMLRSLSNTKPTVNEHDLLKLKKFTEDF 440
>pir||B71196 probable transitional endoplasmic reticulum ATPase - Pyrococcus
horikoshii >gi|3258278|dbj|BAA30961.1| (AP000007) 798aa
long hypothetical transitional endoplasmic reticulum
ATPase [Pyrococcus horikoshii]
Length = 798
Score = 168 bits (421), Expect = 9e-41
Identities = 110/294 (37%), Positives = 168/294 (56%), Gaps = 22/294 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGK 134
+ LI+ + W+DIGGL E K+ + +A+ + K P I PP+G+LL+GPPGTGK
Sbjct: 508 EVLIEVPNVHWDDIGGLEEVKQELREAVEWPL-KYPEAFRAYGITPPKGVLLYGPPGTGK 566
Query: 135 SLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTM 194
+LLA AVA A F +V+ ++LSK+ GES K I +F ARQ +P+VIFIDE+D++
Sbjct: 567 TLLAKAVATESEANFIAVRGPEVLSKWVGESEKNIREIFRKARQAAPTVIFIDEIDAIAP 626
Query: 195 KR-VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVP 251
+R ++ R+I LL EMDG +E V+V+ ATN P LD A+L R I VP
Sbjct: 627 RRGTDVNRVTDRLINQLLTEMDGIQENTG-VVVIAATNRPDILDPALLRPGRFDRLILVP 685
Query: 252 LPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATM-KMLEEMN 308
PD + EIFK+H R + DV L LA+ Y+G +IA V + A M M + +
Sbjct: 686 APDEEARFEIFKVHTRSMPLADDVDLRELARRT--EGYTGADIAAVCREAAMIAMRKALE 743
Query: 309 PELSDP-LRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
+ P ++ +K + +T+ DF+ A+ +I ++K ++ Y + ++F
Sbjct: 744 KGIIKPGMKADEIKQK----AKVTMKDFEEALKKIGPSVSKETMEYYRKIQEQF 793
Score = 155 bits (387), Expect = 9e-37
Identities = 102/259 (39%), Positives = 150/259 (57%), Gaps = 24/259 (9%)
Query: 81 LKALIKRST--ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGT 132
+K + KR T +T+ DIGGL++ + I + I L + K IEPP+G+LL+GPPGT
Sbjct: 171 VKEVEKRMTTGVTYEDIGGLKDVIEKIREMIELPLKHPELFEKLGIEPPKGVLLYGPPGT 230
Query: 133 GKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSL 192
GK+LLA AVAN NA F ++ +++SKY+GES + + +F A + +PS+IFIDE+D++
Sbjct: 231 GKTLLAKAVANEANAYFIAINGPEIMSKYYGESEERLREVFKEAEENAPSIIFIDEIDAI 290
Query: 193 TMKRVSL-DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
KR + + +R++ LLA MDG K R KVIV+ ATN P LD A+ R I
Sbjct: 291 APKRSEVTGEVEKRVVAQLLALMDGLKGR-GKVIVIGATNRPDALDPALRRPGRFDREIE 349
Query: 250 VPLPDVNSAVEIFKIHLRGIHYDVP---------LSRLAKEAVKRLYSGREIANVVKLA- 299
V +PD EI +IH RG+ + L L KE R + I V+K++
Sbjct: 350 VGVPDKQGRKEILQIHTRGMPIEPDFRKEDVLKILEGLKKEGKFRDVIDKAIDRVMKVSE 409
Query: 300 --TMKMLEEMNPELSDPLR 316
K+L+E+N EL + +R
Sbjct: 410 DDIPKVLKELNGELYEEVR 428
>emb|CAC14616.1| (AL449144) probable AAA ATPase [Leishmania major]
>gi|11071813|emb|CAC14315.2| (AL359776) probable
katanin-like protein [Leishmania major]
Length = 565
Score = 168 bits (421), Expect = 9e-41
Identities = 108/285 (37%), Positives = 159/285 (54%), Gaps = 14/285 (4%)
Query: 89 TITWNDIGGLREAKKLIAQAIGLSIA-----KSPIEPPQGILLFGPPGTGKSLLASAVAN 143
++ W DI L AK L+ +A+ + + + + P +GILLFGPPGTGK+LLA AVA
Sbjct: 275 SVRWRDIADLENAKHLLREAVVMPVKYPGLFQGILRPWKGILLFGPPGTGKTLLAKAVAT 334
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS--LDD 201
TFF++ AS ++SK+ G+S KL+ LF LA +PS IFIDE+DSL R S +
Sbjct: 335 ECRTTFFNIAASSVVSKWRGDSEKLVRMLFDLAVHYAPSTIFIDEIDSLMSARSSDGEHE 394
Query: 202 AARRMIGTLLAEMDGFKERK--DKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAV 259
+RRM LL +MDG +R+ + V VL A+N PWDLD AML RL RI V LP ++ V
Sbjct: 395 GSRRMKTELLTQMDGLSKRRGGEVVFVLAASNVPWDLDTAMLRRLEKRILVSLPTRDARV 454
Query: 260 EIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATM----KMLEEMNPELSDPL 315
+F+ L + A A+ SG +I V + A M K++ ++ +D
Sbjct: 455 LMFR-RLLPNSFASDADYEACAALTEGMSGADIDVVCREAMMRPVRKLISQLEAAGNDRN 513
Query: 316 RVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKE 360
+ L L TL+D + ++A +S + +D+ KY+ W +E
Sbjct: 514 AHARLPSEPLRPPAATLEDVQASVACTRSSVRVADLDKYDVWTRE 558
>gb|AAF51127.1| (AE003580) CG3326 gene product [Drosophila melanogaster]
Length = 477
Score = 168 bits (420), Expect = 1e-40
Identities = 93/280 (33%), Positives = 160/280 (56%), Gaps = 15/280 (5%)
Query: 92 WNDIGGLREAKKLIAQAIGLSIAKSPIE-----PPQGILLFGPPGTGKSLLASAVANSLN 146
W DI GL AK +AI + + + + PP+G+LLFGPPGTGK+L+A ++A+
Sbjct: 203 WEDIAGLESAKSTFLEAIIMPLRRPDLFTGVRCPPRGVLLFGPPGTGKTLIAKSIASQAK 262
Query: 147 ATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDAARR 205
A FFS+ S L SK+ G++ KL+ LF++A P++IFIDEVDSL KR + +++ R
Sbjct: 263 AKFFSINPSSLTSKWVGDAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKRSANENESTLR 322
Query: 206 MIGTLLAEMDGFKERKD-KVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKI 264
+ L +DG ++ +V+V+ ATN P +LDEA+ R R+YVPLP + +I +
Sbjct: 323 LKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRRRFVRRLYVPLPTREARQKIIEK 382
Query: 265 HLRGIHYDVPLSRLAKEA-VKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGR 323
+ + +++ + ++ + A + YSG ++ + + A+M L + P+ + + L
Sbjct: 383 LIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAPLRSLTPDQMEVIETHQLPA- 441
Query: 324 DLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFAI 363
+T+DDFK A+ I ++ D K++E W + + +
Sbjct: 442 ------VTMDDFKQALRVISKSVSSEDCKQFEAWNEIYGV 475
>gi|4759108 suppressor of K+ transport defect 1; mouse SKD1 homolog [Homo
sapiens] >gi|9087199|sp|O75351|SKD1_HUMAN SKD1 PROTEIN
>gi|3329390|gb|AAC39874.1| (AF038960) SKD1 homolog [Homo
sapiens]
Length = 444
Score = 167 bits (418), Expect = 2e-40
Identities = 122/388 (31%), Positives = 192/388 (49%), Gaps = 60/388 (15%)
Query: 34 RCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRR--------------EGKNEYFD 79
+ + +R +E L + L E K E+KA+ K EG+++ +
Sbjct: 53 KAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADEKGNDSDGEGESDDPE 112
Query: 80 KLKA--------LIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILL 126
K K +I R + W+D+ GL AK+ + +A+ L I + P +GILL
Sbjct: 113 KRKLQNQLQGAIVIDRPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILL 172
Query: 127 FGPPGTGKSLLASAVANSLN-ATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIF 185
FGPPGTGKS LA AVA N +TFFS+ +SDL+SK+ GES KL+ LF LAR+ PS+IF
Sbjct: 173 FGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIF 232
Query: 186 IDEVDSLTMKRVSLD-DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRL 244
IDE+DSL R + +AARR+ L +M G D ++VL ATN PW LD A+ R
Sbjct: 233 IDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF 292
Query: 245 PIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKR-LYSGREIANVVKLATMKM 303
RIY+PLP+ ++ +FK+HL + + + K YSG +I +V+ A M+
Sbjct: 293 EKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADIGIIVRDALMQP 352
Query: 304 LEEM----------NPELSDP--------------------LRVSTLKGRDLTTRPLTLD 333
+ ++ P +DP + + G L +++
Sbjct: 353 VRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMS 412
Query: 334 DFKYAMARIKSPITKSDVKKYERWAKEF 361
D +++ K + + D+ K +++ ++F
Sbjct: 413 DMLRSLSNTKPTVNEHDLLKLKKFTEDF 440
>gi|6677981 suppressor of K+ transport defect 1 [Mus musculus]
>gi|1173444|sp|P46467|SKD1_MOUSE SKD1 PROTEIN
>gi|1083520|pir||S48696 suppressor protein SKD1 - mouse
>gi|557876|gb|AAA50497.1| (U10119) SKD1 [Mus musculus]
Length = 444
Score = 167 bits (418), Expect = 2e-40
Identities = 97/232 (41%), Positives = 142/232 (60%), Gaps = 8/232 (3%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLA 138
+I+R + W+D+ GL AK+ + +A+ L I + P +GILLFGPPGTGKS LA
Sbjct: 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184
Query: 139 SAVANSLN-ATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRV 197
AVA N +TFFS+ +SDL+SK+ GES KL+ LF LAR+ PS+IFIDE+DSL R
Sbjct: 185 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 244
Query: 198 SLD-DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVN 256
+ +AARR+ L +M G D ++VL ATN PW LD A+ R RIY+PLP+ +
Sbjct: 245 ENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 304
Query: 257 SAVEIFKIHLRGIHYDVPLSRLAKEAVKR-LYSGREIANVVKLATMKMLEEM 307
+ +F++HL + + + K YSG +I+ +V+ A M+ + ++
Sbjct: 305 ARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGVDISIIVRDALMQPVRKV 356
>pir||T03922 hypothetical protein F32D1.1 - Caenorhabditis elegans
>gi|2291232|gb|AAB65351.1| (AF016427) Contains
similarity to Pfam domain: PF00004 (AAA), Score=268.1,
E-value=3.7e-77, N=1 [Caenorhabditis elegans]
Length = 594
Score = 166 bits (415), Expect = 5e-40
Identities = 102/282 (36%), Positives = 156/282 (55%), Gaps = 20/282 (7%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVANS 144
I W D+ GL AKK + + + L + + PP+G+LLFGPPGTGK+++ VA+
Sbjct: 313 IGWADVAGLEGAKKALREIVVLPFKRPDVFTGIRAPPKGVLLFGPPGTGKTMIGRCVASQ 372
Query: 145 LNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDAA 203
ATFF++ AS L SK+ GE KL+ ALFS+AR PSVIFIDE+DSL R S +++
Sbjct: 373 CKATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSESEHESS 432
Query: 204 RRMIGTLLAEMDGFKERKD-KVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIF 262
RR+ L ++DG D +++VL ATN P +LDEA R R+Y+ LP+ S +I
Sbjct: 433 RRIKTEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPESRTQIV 492
Query: 263 KIHLRGIHYDVPLSRLAKEAVKRL---YSGREIANVVKLATMKMLEEMNPELSDPLRVST 319
+ L G +D+ L E ++ L YSG ++ + A M + ++ + + T
Sbjct: 493 QNLLVGTRHDITNHNL--ERIRELTDGYSGADMRQLCTEAAMGPIRDIGDD------IET 544
Query: 320 LKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
+ D+ R +T+ DF A ++ + S + Y W K+F
Sbjct: 545 IDKDDI--RAVTVMDFAEAARVVRPTVDDSQLDAYAAWDKKF 584
>emb|CAB95999.1| (AL360054) AAA family ATPase with similarity to katanin; putative
microtubule severing protein by similarity
[Schizosaccharomyces pombe]
Length = 741
Score = 166 bits (415), Expect = 5e-40
Identities = 108/299 (36%), Positives = 160/299 (53%), Gaps = 33/299 (11%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLA 138
++ + W+DI GL AK + +A+ + + EP +G+LLFGPPGTGK++LA
Sbjct: 450 VVSGDEVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLREPARGMLLFGPPGTGKTMLA 509
Query: 139 SAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS 198
AVA + FFS+ AS L SK+ GES KL+ ALF+LA++LSPS+IF+DE+DSL R S
Sbjct: 510 RAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSS 569
Query: 199 --LDDAARRMIGT-------LLAEMDGFKERKD--KVIVLTATNAPWDLDEAMLSRLPIR 247
+ R I T LA ++ D +V+VL ATN PW +D+A R R
Sbjct: 570 DGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARRRFVRR 629
Query: 248 IYVPLPDVNSAVEIFKIHLRGI--HYDVPLSRLAKEAVKR---LYSGREIANVVKLATMK 302
Y+PLPD + ++HL + + LS EA+ + YSG ++ + K A M
Sbjct: 630 TYIPLPDETTR----RLHLNNLLKYQKHSLSLEDIEAIVKATEYYSGSDLTALAKDAAMG 685
Query: 303 MLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
L + L L + + RP+ LDDFK ++ I+ + +++Y W KEF
Sbjct: 686 PLRSLGESL--------LFTKMESIRPINLDDFKTSIKVIRPSVNLQGLERYSEWDKEF 736
>pir||H71114 probable cell division control protein (transitional endoplasmic
reticulum ATPase) - Pyrococcus horikoshii
>gi|3257095|dbj|BAA29778.1| (AP000003) 840aa long
hypothetical cell division control protein (transitional
endoplasmic reticulum ATPase) [Pyrococcus horikoshii]
Length = 840
Score = 164 bits (412), Expect = 1e-39
Identities = 121/352 (34%), Positives = 183/352 (51%), Gaps = 38/352 (10%)
Query: 27 KARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLK---- 82
+A ++ LR KI E S+ +LEE K V KR ++++ LK
Sbjct: 485 EAAMVVLRRLINEGKINPEAESIPREVLEELK--------VTKR-----DFYEALKMVEP 531
Query: 83 -----ALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPG 131
LI+ + W+DIGGL E K+ + +A+ + K I PP+G+LL+GPPG
Sbjct: 532 SALREVLIEVPNVHWDDIGGLEEVKQELREAVEWPLKYPKAFKKLGITPPKGVLLYGPPG 591
Query: 132 TGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDS 191
TGK+LLA AVA A F +V+ ++LSK+ GES K I +F ARQ +P++IFIDE+D+
Sbjct: 592 TGKTLLAKAVATESEANFIAVRGPEVLSKWVGESEKRIREIFRKARQAAPAIIFIDEIDA 651
Query: 192 LTMKRVSL--DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIR 247
+ R + + R+I LL EMDG E V+V+ ATN P LD A+L R
Sbjct: 652 IAPARGTSEGEKVTDRIINQLLTEMDGLVENSG-VVVIAATNRPDILDPALLRPGRFDRL 710
Query: 248 IYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLE 305
I VP PD + EIFK+H R + DV L LA+ Y+G +IA V + A + L
Sbjct: 711 ILVPAPDEEARFEIFKVHTRSMPLADDVDLRELARRT--EGYTGADIAAVCREAALNALR 768
Query: 306 EMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERW 357
+ + ++ L +T DF+ A+ ++K ++K ++ Y ++
Sbjct: 769 RVVKSVPKE-KLEEESEEFLNKLVVTRKDFEEALKKVKPSVSKYMMEYYRQF 819
Score = 146 bits (364), Expect = 5e-34
Identities = 83/190 (43%), Positives = 120/190 (62%), Gaps = 12/190 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVA 142
+T+ DIGGL+EA + I + + L + K P IEPP+G+LL+GPPGTGK+LLA AVA
Sbjct: 209 VTYEDIGGLKEAIQKIREMVELPL-KHPELFERLGIEPPKGVLLYGPPGTGKTLLAKAVA 267
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS-LDD 201
N NA F ++ +++SKY+GES + + +F A + +P++IFIDE+D++ KR + +
Sbjct: 268 NEANAYFIAINGPEIMSKYYGESEERLREIFKEAEENAPAIIFIDEIDAIAPKREEVVGE 327
Query: 202 AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAV 259
+R++ LL MDG K R KVIV+ ATN P LD A+ R I V +PD
Sbjct: 328 VEKRVVSQLLTLMDGLKGR-GKVIVIGATNRPDALDPALRRPGRFDREIEVGVPDKQGRK 386
Query: 260 EIFKIHLRGI 269
EI +IH RG+
Sbjct: 387 EILQIHTRGM 396
>sp|Q58556|YB56_METJA CELL DIVISION CYCLE PROTEIN 48 HOMOLOG MJ1156
>gi|2118117|pir||C64444 cell division control protein
CDC48 homolog - Methanococcus jannaschii
>gi|1591785|gb|AAB99153.1| (U67557) cell division
control protein 48 (cdc48), AAA family [Methanococcus
jannaschii]
Length = 903
Score = 164 bits (411), Expect = 1e-39
Identities = 99/237 (41%), Positives = 142/237 (59%), Gaps = 15/237 (6%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ L++ + W DIGGL E K+ + +A+ + K + PP+G+LLFGPPGTGK+
Sbjct: 441 EVLVEVPNVKWEDIGGLEEVKQELREAVEWPLKAKEVFEKIGVRPPKGVLLFGPPGTGKT 500
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA AVAN A F SVK ++ SK+ GES K I +F ARQ +P +IF DE+D++ K
Sbjct: 501 LLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPK 560
Query: 196 R-VSLDDAAR-RMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVP 251
R L A +++ LL E+DG +E KD V+V+ ATN P +D A+L RL I VP
Sbjct: 561 RGRDLSSAVTDKVVNQLLTELDGMEEPKD-VVVIAATNRPDIIDPALLRPGRLDRVILVP 619
Query: 252 LPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
+PD + ++IFKIH R ++ DV L LAK+ Y+G +I + + A M + E
Sbjct: 620 VPDEKARLDIFKIHTRSMNLAEDVNLEELAKKT--EGYTGADIEALCREAAMLAVRE 674
Score = 155 bits (389), Expect = 5e-37
Identities = 104/283 (36%), Positives = 155/283 (54%), Gaps = 17/283 (6%)
Query: 72 EGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGIL 125
E K E ++K K +T+ DIGGL+E K + + I L + K IEPP+G+L
Sbjct: 159 ELKEEPVSEIKET-KVPDVTYEDIGGLKEEVKKVREMIELPMRHPELFEKLGIEPPKGVL 217
Query: 126 LFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIF 185
L GPPGTGK+LLA AVAN A F+ + +++SKY GE+ + + +F A + +PS+IF
Sbjct: 218 LVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIF 277
Query: 186 IDEVDSLTMKR-VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--S 242
IDE+D++ KR + + RR++ LL MDG K R +V+V+ ATN P LD A+
Sbjct: 278 IDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGR-GQVVVIGATNRPNALDPALRRPG 336
Query: 243 RLPIRIYVPLPDVNSAVEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLAT 300
R I + +PD EI +IH R + DV L LA V + G ++A + K A
Sbjct: 337 RFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLAD--VTHGFVGADLAALCKEAA 394
Query: 301 MKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIK 343
M+ L + P + L + L +T+DDFK A+ ++
Sbjct: 395 MRALRRVLPSID--LEAEEIPKEVLDNLKVTMDDFKEALKDVE 435
>pir||B72479 probable transitional endoplasmic reticulum ATPase APE2474 -
Aeropyrum pernix (strain K1) >gi|5106179|dbj|BAA81490.1|
(AP000064) 699aa long hypothetical transitional
endoplasmic reticulum ATPase [Aeropyrum pernix]
Length = 699
Score = 163 bits (408), Expect = 3e-39
Identities = 99/281 (35%), Positives = 158/281 (55%), Gaps = 34/281 (12%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSI------AKSPIEPPQGILLFGPPGTGKSLLASAVAN 143
+ W+DIGGL + K+ + + + + + I PP+G+LLFGPPGTGK+LLA AVA
Sbjct: 420 VRWSDIGGLEDVKQELREVVEWPLKHPEAFTRMGIRPPRGVLLFGPPGTGKTLLAKAVAT 479
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAA 203
A F +V+ ++LSK+ GES + I +F+ ARQ +P+V+F DE+D++ R D
Sbjct: 480 ESGANFIAVRGPEILSKWVGESERAIREIFAKARQHAPAVVFFDEIDAIAPVR-GTDVGT 538
Query: 204 R---RMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSA 258
R R++ LL E+DG + D V+V+ ATN P +D A++ RL IYVP PD +S
Sbjct: 539 RVTERIVSQLLTEIDGVSDLHD-VVVIAATNRPDMVDPALMRPGRLEKMIYVPPPDFSSR 597
Query: 259 VEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLR 316
+EI +IH R + DV L+ +A+ Y+G +I +V+ A++ L E
Sbjct: 598 LEILRIHTRKVPLAEDVDLAEIARRT--EGYTGADIEALVREASLAALRE---------- 645
Query: 317 VSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERW 357
D+ +++ F+ A+ ++K +T V+ Y+RW
Sbjct: 646 -------DINAAEVSMRHFEVALKKVKPSVTPQMVEYYKRW 679
Score = 161 bits (402), Expect = 2e-38
Identities = 99/264 (37%), Positives = 157/264 (58%), Gaps = 16/264 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVAN 143
+T+ DIGGL+E + + + + L + + IEPP+GILL+GPPGTGK+LLA AVAN
Sbjct: 147 VTYEDIGGLKEVIEKVREMVELPLRHPEIFKRLGIEPPKGILLYGPPGTGKTLLAKAVAN 206
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS-LDDA 202
+A F S+ +++SKY+GES + + +F A++ +PS+IFIDE+D++ KR + +
Sbjct: 207 EADAYFISINGPEIMSKYYGESEQRLREIFEEAKKNAPSIIFIDEIDAIAPKRDEVVGEV 266
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVE 260
RR++ LLA MDG E + VIV+ ATN P +D A+ R I VPLPD + +E
Sbjct: 267 ERRVVAQLLALMDGL-EARGNVIVIAATNRPNAIDPALRRPGRFDREIEVPLPDKHGRLE 325
Query: 261 IFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH R + D+ L +LA+ + + ++G ++A + + A M L PE+ L
Sbjct: 326 ILQIHTRHMPLAEDMDLEKLAE--MTKGFTGADLAALAREAAMYALRRYLPEID--LDQE 381
Query: 319 TLKGRDLTTRPLTLDDFKYAMARI 342
++ L +T++DF A+ I
Sbjct: 382 SIPVEVLEKMVVTMEDFLKALREI 405
>gi|11499681 cell division control protein 48, AAA family (cdc48-2)
[Archaeoglobus fulgidus] >gi|7435750|pir||B69512 cell
division control protein 48, AAA family (cdc48-2)
homolog - Archaeoglobus fulgidus
>gi|2648442|gb|AAB89157.1| (AE000959) cell division
control protein 48, AAA family (cdc48-2) [Archaeoglobus
fulgidus]
Length = 811
Score = 163 bits (408), Expect = 3e-39
Identities = 102/284 (35%), Positives = 156/284 (54%), Gaps = 34/284 (11%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVAN 143
+TWND+GGL + K+ I +A+ + K I+PP+G+LL+GPPGTGK+L+A AVAN
Sbjct: 531 VTWNDVGGLEDVKREIIEAVEWPLKYPEKFKKFGIKPPKGVLLYGPPGTGKTLIAKAVAN 590
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAA 203
A F S+K +LSK+ GES K + +F ARQ++P +IF DE+D++ R +D+ +
Sbjct: 591 ESEANFISIKGGQILSKWLGESEKAVRKIFRKARQVAPCIIFFDEIDAIAQMR-GIDEGS 649
Query: 204 R---RMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSA 258
R R++ LL EMDG +E V+V+ ATN P LD A+L R +YV PD S
Sbjct: 650 RAVERVLNQLLTEMDGLEELHG-VVVIGATNRPDILDPALLRPGRFDRMVYVRPPDKKSR 708
Query: 259 VEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLR 316
+ IFKIH R + DV L LA + Y G +I + + A M + E
Sbjct: 709 LAIFKIHTRDMPLSEDVDLEELAD--LTEGYVGADIEAICREAVMLAIRE---------- 756
Query: 317 VSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKE 360
++ + + F A+ +IK + ++ + YER+ ++
Sbjct: 757 -------NINAEKVEMRHFLEALKKIKPSVNEAMLNFYERFEEK 793
Score = 146 bits (366), Expect = 3e-34
Identities = 86/240 (35%), Positives = 141/240 (57%), Gaps = 11/240 (4%)
Query: 87 RSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASA 140
++ IT+ DIGGL+E + + + I L + + IEPP+G+LL+GPPGTGK+L+A A
Sbjct: 191 KAGITYEDIGGLKEELQKVREVIELPLRYPELFQRLGIEPPKGVLLYGPPGTGKTLIAKA 250
Query: 141 VANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL- 199
VAN + A+FF++ +++SK++GES + + +F A++ +PS+IFIDE+DS+ KR +
Sbjct: 251 VANEIGASFFTINGPEIMSKFYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVT 310
Query: 200 DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNS 257
+ RR++ LL MDG +ER +VIV+ ATN +D A+ R I + +PD
Sbjct: 311 GEVERRVVAQLLTLMDGLEER-GQVIVIGATNRIDAVDPALRRPGRFDREIEIGVPDREG 369
Query: 258 AVEIFKIHLRGIHYDVPLSR-LAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLR 316
EIF+IH R + + SR +A++R + ++K E N E + ++
Sbjct: 370 RYEIFQIHTRNMPLEAKYSREFVLDAIERFKRQVDDPELIKNLDFLYDEIKNSETEEEVK 429
>dbj|BAB02560.1| (AP000417) contains similarity to unknown
protein~gb|AAF02877.1~gene_id:MMB12.22 [Arabidopsis
thaliana]
Length = 270
Score = 162 bits (407), Expect = 4e-39
Identities = 95/251 (37%), Positives = 146/251 (57%), Gaps = 13/251 (5%)
Query: 118 IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLAR 177
+ P +GILLFGPPGTGK+LLA A+A A F S+ S L SK+FG++ KL ALFS A
Sbjct: 13 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFAS 72
Query: 178 QLSPSVIFIDEVDSLTMKRVSL--DDAARRMIGTLLAEMDGFKER-KDKVIVLTATNAPW 234
+L+P +IF+DEVDSL R +A RRM +A DG + + ++++L ATN P+
Sbjct: 73 KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKDSQRILILGATNRPF 132
Query: 235 DLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHL--RGIHYDVPLSRLAKEAVKRLYSGREI 292
DLD+A++ RLP RIYV LPD + ++I KI L + +LAKE YSG ++
Sbjct: 133 DLDDAVIRRLPRRIYVDLPDAENRLKILKIFLTPENLETGFEFDKLAKET--EGYSGSDL 190
Query: 293 ANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPIT--KSD 350
N+ A + ++E+ E + ++ RPL+LDDF + A++ + +
Sbjct: 191 KNLCIAAAYRPVQELLQEENK----DSVTNASPDLRPLSLDDFIQSKAKVSPSVAYDATT 246
Query: 351 VKKYERWAKEF 361
+ + +W +++
Sbjct: 247 MNELRKWNEQY 257
>gb|AAK42565.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 607
Score = 162 bits (405), Expect = 7e-39
Identities = 104/294 (35%), Positives = 165/294 (55%), Gaps = 29/294 (9%)
Query: 80 KLKALIKRSTITWNDIGGLREAKKLIAQAIGLSI------AKSPIEPPQGILLFGPPGTG 133
K K I+ ITW+DIGG +AKK I + I L + K ++PP+G+LLFGPPG G
Sbjct: 48 KKKVEIEDKKITWDDIGGYEDAKKEIREYIELPLKNKDVATKYGLKPPKGMLLFGPPGCG 107
Query: 134 KSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLT 193
K+++ A+AN F V SD++SK++GES + LF+ AR+ +P ++F DE+D++
Sbjct: 108 KTMMMRALANESKLNFLYVNISDIMSKWYGESEARLRELFNNARKNAPCILFFDEIDTIG 167
Query: 194 MKRVSL--DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
+KR S D R++ +L+E+DG +D VIV+ +TN P LD+A+L R IY
Sbjct: 168 VKRESHTGDSVTPRLLSLMLSEIDGL-HSEDGVIVVGSTNVPQMLDKALLRAGRFDKLIY 226
Query: 250 VPLPDVNSAVEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM 307
+ P+ + +I +IH RG + DV +LA+ + YSG ++AN+ + A K+ E
Sbjct: 227 IGPPNKEARKQILQIHCRGKPLAEDVDFDKLAE--ITERYSGADLANLCQEAARKVASE- 283
Query: 308 NPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
+ KG D R +T+ DF + + K IT ++ YE++ +F
Sbjct: 284 ----------AIEKGAD---RKITMADFIELIKKYKPSITLQMIEDYEKFRLDF 324
Score = 112 bits (278), Expect = 6e-24
Identities = 95/348 (27%), Positives = 174/348 (49%), Gaps = 39/348 (11%)
Query: 12 CQEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRR 71
CQE + S +K + A+ + I S++ ++E+ +K+ + ++
Sbjct: 273 CQEAARKVASEA-IEKGADRKITMADFIELIKKYKPSITLQMIEDYEKFRLDFERRVRKG 331
Query: 72 EGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSI------AKSPIEPPQGIL 125
E +NE +KL T NDIGG E K + + + L + + + P +GIL
Sbjct: 332 EEENELEEKL---------TLNDIGGYNEIKTELKELLELQLYHYKLLEQLRVPPIRGIL 382
Query: 126 LFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIF 185
L+GPPG GK+++A A+A +LN ++ ++++ K + + I +F+ AR+ P++I
Sbjct: 383 LYGPPGVGKTMMAKALAKTLNVKLIALSGAEIMYKGYEGAIAAIKEVFNRARENKPAIIL 442
Query: 186 IDEVDSLTMKR--VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
+DE+D++ KR S D++ +++ LL EMDG + K+ V+V+ TN +D A+L
Sbjct: 443 LDELDAIASKRSYKSYGDSS-KIVNQLLTEMDGIRSLKE-VVVIGTTNRLKAIDPALLRP 500
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYD-VPLSRLAKEAVKRLYSGREIANVVKLAT 300
R I++PLP+ ++I ++ + V LA + YSG ++A + + A
Sbjct: 501 GRFDKIIHMPLPNREERLDILMKYIGKEECEKVDCGILADQT--EGYSGADLAALAREAK 558
Query: 301 MKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITK 348
MK+L+ S L+G + R LT +D A+ +I + K
Sbjct: 559 MKVLK------------SILRGE--SNRTLTREDLIDALNKIHPSVKK 592
>gb|AAK41191.1| AAA family ATPase, p60 katanin [Sulfolobus solfataricus]
Length = 372
Score = 161 bits (403), Expect = 1e-38
Identities = 103/323 (31%), Positives = 170/323 (51%), Gaps = 27/323 (8%)
Query: 53 LLEEAKK---WEEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAI 109
++ E KK + EK G N + + ++ +++ DI GL + K+ + +AI
Sbjct: 60 MINEYKKRISYLEKVLPASSDGSGDNTSPPEEVVITEKPKVSFKDIVGLDDVKEALREAI 119
Query: 110 GLSIAKSPIEP---PQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESS 166
+ + P P+GILL+GPPG GK+++A+AVAN +++ F + A+ ++SK+ GE+
Sbjct: 120 IYPTKRPDLFPLGWPRGILLYGPPGCGKTMIAAAVANEIDSIFMQLDAASVMSKWLGEAE 179
Query: 167 KLISALFSLARQLS-----PSVIFIDEVDSLTMKRVSLDDAARRMIGTLLAEMDGFKERK 221
K ++ +F +AR+ S P++IFIDE+D+L + R+ L EMDG ++
Sbjct: 180 KNVANVFKMAREESKKQNKPAIIFIDELDALLGVYSTEVGGEARVRNQFLKEMDGLLDKS 239
Query: 222 D--KVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLA 279
+ KV V+ ATN PW LDEA L R RIYVPLPD + +FK + I D +S
Sbjct: 240 ENYKVYVIGATNKPWRLDEAFLRRFQKRIYVPLPDYEQRLSLFKYYTSKIKLDTEVSLEE 299
Query: 280 KEAVKRLYSGREIANVVKLATMKMLEEM-NPELSDPLRVSTLKGRDLTTRPLTLDDFKYA 338
+ Y+ +I ++V+ A +K+++EM L +P R +TL DFK
Sbjct: 300 LAKLTEGYTASDIRDIVQAAHIKVVKEMFKNNLGEP-------------RTITLQDFKDI 346
Query: 339 MARIKSPITKSDVKKYERWAKEF 361
+ + +K YE W ++F
Sbjct: 347 LKVRMPSVNPELIKAYEAWTEKF 369
>pir||T01303 hypothetical protein T14P8.7 - Arabidopsis thaliana
>gi|3193292|gb|AAC19276.1| (AF069298) similar to ATPases
associated with various cellular activites (Pfam:
AAA.hmm, score: 230.91) [Arabidopsis thaliana]
>gi|7269007|emb|CAB80740.1| (AL161494) coded for by A.
thaliana cDNA T88606, coded for by A. thaliana cDNA
T75804~strong similarity to similar to ATPases
associated with various cellular activites (Pfam:
AAA.hmm, score: 230.91)~Contains ATP/GTP-binding site
motif A (P-loop) AA111>
Length = 371
Score = 161 bits (403), Expect = 1e-38
Identities = 110/340 (32%), Positives = 186/340 (54%), Gaps = 26/340 (7%)
Query: 42 IASENLSLSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLKA-LIKRSTI--TWNDIGGL 98
I++E++S L + + + K K +NE+ KL + +I S I +++DIG L
Sbjct: 15 ISAESISYGLQTLHDIQNENKSLKKSLKDVVTENEFEKKLLSDVIPPSDIGVSFDDIGAL 74
Query: 99 REAKKLIAQAIGLSIAKSPI-------EPPQGILLFGPPGTGKSLLASAVANSLNATFFS 151
K+ + + + L + + + +P +GILLFGPPGTGK++LA AVA A F +
Sbjct: 75 ENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFIN 134
Query: 152 VKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS--LDDAARRMIGT 209
+ S + SK+FGE K + A+FSLA +++PSVIF+DEVDS+ +R + +A R+M
Sbjct: 135 ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 194
Query: 210 LLAEMDGFKER-KDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHL-- 266
+ DG + + +++V+VL ATN P+DLDEA++ RLP R+ V LPD + +I + L
Sbjct: 195 FMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNRSKILSVILAK 254
Query: 267 RGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRD-- 324
I DV L +A + YSG ++ N+ A + E+ + + + R
Sbjct: 255 EEIAPDVDLEAIAN--MTDGYSGSDLKNLCVTAAHFPIREILEKEKKEKTAAQAENRPTP 312
Query: 325 -----LTTRPLTLDDFKYAMARIKSPIT--KSDVKKYERW 357
R LT++DFK A ++ + ++ S++ + ++W
Sbjct: 313 PLYSCTDVRSLTMNDFKAAHDQVCASVSSDSSNMNELQQW 352
>sp|P46464|CDCH_HALSA CDCH PROTEIN >gi|629399|pir||S47018 cdcH protein - Halobacterium
salinarum >gi|517390|emb|CAA56097.1| (X79560) cdcH
[Halobacterium salinarum]
Length = 742
Score = 160 bits (400), Expect = 3e-38
Identities = 98/265 (36%), Positives = 152/265 (56%), Gaps = 17/265 (6%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSI------AKSPIEPPQGILLFGPPGTGKS 135
+ L++ ITW+D+GGL EAK + +++ + + +EPP G+LL+GPPGTGK+
Sbjct: 451 EVLVELPKITWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKT 510
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
L+A AVAN NA F SV+ LLSK+ GES K I F ARQ++P+VIF DE+DSL
Sbjct: 511 LMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLAPG 570
Query: 196 R--VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVP 251
R ++ + R++ LL E+DG +E ++V+V+ ATN P +D A++ R + V
Sbjct: 571 RGQTGGNNVSERVVNQLLTELDGLEE-MEEVMVIAATNRPDIIDPALIRSGRFDRLVQVG 629
Query: 252 LPDVNSAVEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNP 309
P + +I KIH + + DV L LA+ A Y G ++AN+ + A ++ L +
Sbjct: 630 QPGIEGREQILKIHTQDTPLAADVSLRELAERADG--YVGSDLANIAREAAIEALRD--D 685
Query: 310 ELSDPLRVSTLKGRDLTTRPLTLDD 334
E +D + ++ + RP DD
Sbjct: 686 EDADDVGMAHFRAAMENVRPTITDD 710
Score = 152 bits (380), Expect = 6e-36
Identities = 101/265 (38%), Positives = 150/265 (56%), Gaps = 16/265 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVAN 143
IT+ DIGGL + + + + L + K IEPPQG+LL GPPGTGK+LLA AVAN
Sbjct: 186 ITYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLAKAVAN 245
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
+A+FFS+ +++SKY+GES + + +F A+ SPS+IFIDE+DS+ KR + +
Sbjct: 246 ETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDVTGEV 305
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG E + +VIV+ ATN +D A+ R I + +PD E
Sbjct: 306 ERRVVAQLLTMMDGL-EGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREE 364
Query: 261 IFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I KIH RG + DV LS LA + + G +I ++ K A M+ L PE+ L
Sbjct: 365 ILKIHTRGMPLSDDVNLSTLADDT--HGFVGADIESLSKEAAMRALRRYLPEID--LDEE 420
Query: 319 TLKGRDLTTRPLTLDDFKYAMARIK 343
+ + + +DFK A++ ++
Sbjct: 421 DIPPSLIDRMIVKREDFKGALSEVE 445
>gb|AAG19919.1| (AE005075) cell division cycle protein; Cdc48c [Halobacterium sp.
NRC-1]
Length = 742
Score = 160 bits (400), Expect = 3e-38
Identities = 98/265 (36%), Positives = 152/265 (56%), Gaps = 17/265 (6%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSI------AKSPIEPPQGILLFGPPGTGKS 135
+ L++ ITW+D+GGL EAK + +++ + + +EPP G+LL+GPPGTGK+
Sbjct: 451 EVLVELPKITWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKT 510
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
L+A AVAN NA F SV+ LLSK+ GES K I F ARQ++P+VIF DE+DSL
Sbjct: 511 LMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAPTVIFFDELDSLAPG 570
Query: 196 R--VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVP 251
R ++ + R++ LL E+DG +E ++V+V+ ATN P +D A++ R + V
Sbjct: 571 RGQTGGNNVSERVVNQLLTELDGLEE-MEEVMVIAATNRPDIIDPALIRSGRFDRLVQVG 629
Query: 252 LPDVNSAVEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNP 309
P + +I KIH + + DV L LA+ A Y G ++AN+ + A ++ L +
Sbjct: 630 QPGIEGREQILKIHTQDTPLAADVSLRELAERADG--YVGSDLANIAREAAIEALRD--D 685
Query: 310 ELSDPLRVSTLKGRDLTTRPLTLDD 334
E +D + ++ + RP DD
Sbjct: 686 EDADDVGMAHFRAAMENVRPTITDD 710
Score = 152 bits (380), Expect = 6e-36
Identities = 101/265 (38%), Positives = 150/265 (56%), Gaps = 16/265 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVAN 143
IT+ DIGGL + + + + L + K IEPPQG+LL GPPGTGK+LLA AVAN
Sbjct: 186 ITYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLAKAVAN 245
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
+A+FFS+ +++SKY+GES + + +F A+ SPS+IFIDE+DS+ KR + +
Sbjct: 246 ETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDDSPSIIFIDELDSIAPKREDVTGEV 305
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG E + +VIV+ ATN +D A+ R I + +PD E
Sbjct: 306 ERRVVAQLLTMMDGL-EGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEIGREE 364
Query: 261 IFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I KIH RG + DV LS LA + + G +I ++ K A M+ L PE+ L
Sbjct: 365 ILKIHTRGMPLSDDVNLSTLADDT--HGFVGADIESLSKEAAMRALRRYLPEID--LDEE 420
Query: 319 TLKGRDLTTRPLTLDDFKYAMARIK 343
+ + + +DFK A++ ++
Sbjct: 421 DIPPSLIDRMIVKREDFKGALSEVE 445
>gb|AAF02877.1|AC009525_11 (AC009525) Unknown protein [Arabidopsis thaliana]
Length = 1217
Score = 159 bits (399), Expect = 4e-38
Identities = 111/334 (33%), Positives = 183/334 (54%), Gaps = 26/334 (7%)
Query: 48 SLSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLKA-LIKRSTI--TWNDIGGLREAKKL 104
S S+ LL + ++ RK +NE+ KL + +I S I +++DIG L K
Sbjct: 867 SPSYELLRTYSQGQQAYHLGRKDVVTENEFEKKLLSDVIPPSDIGVSFSDIGALENVKDT 926
Query: 105 IAQAIGLSIAKSPI-------EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDL 157
+ + + L + + + +P +GILLFGPPGTGK++LA AVA A F ++ S +
Sbjct: 927 LKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 986
Query: 158 LSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS--LDDAARRMIGTLLAEMD 215
SK+FGE K + A+FSLA +++PSVIF+DEVDS+ +R + +A R+M + D
Sbjct: 987 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMINWD 1046
Query: 216 GFKER-KDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHL--RGIHYD 272
G + + K++V+VL ATN P+DLDEA++ RLP R+ V LPD + +I + L + D
Sbjct: 1047 GLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDSANRSKILSVILAKEEMAED 1106
Query: 273 VPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDL------- 325
V L +A + YSG ++ N+ A + E+ + V+ + R +
Sbjct: 1107 VDLEAIAN--MTDGYSGSDLKNLCVTAAHLPIREILEKEKKERSVAQAENRAMPQLYSST 1164
Query: 326 TTRPLTLDDFKYAMARIKSPIT--KSDVKKYERW 357
RPL ++DFK A ++ + + S++ + ++W
Sbjct: 1165 DVRPLNMNDFKTAHDQVCASVASDSSNMNELQQW 1198
>pir||T40781 26S proteinase subunit - fission yeast (Schizosaccharomyces pombe)
>gi|2894288|emb|CAA17029.1| (AL021837) 26s protease
subunit [Schizosaccharomyces pombe]
Length = 660
Score = 158 bits (395), Expect = 1e-37
Identities = 105/308 (34%), Positives = 164/308 (53%), Gaps = 35/308 (11%)
Query: 76 EYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPP 130
EY + + + W+DI GL +AK + +A+ + + EP QG+LLFGPP
Sbjct: 362 EYAIMNEIISNHEPVYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLREPVQGMLLFGPP 421
Query: 131 GTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVD 190
GTGK++LA AVA ATFFS+ AS L SKY G+S KL+ ALF +A++ + SVIF+DE+D
Sbjct: 422 GTGKTMLARAVATEAKATFFSISASSLTSKYLGDSEKLVRALFEVAKRQTCSVIFVDEID 481
Query: 191 SLTMKR---VSLDDAARRMIGTLL--------AEMDGFKERKDKVIVLTATNAPWDLDEA 239
S+ R + +++RR+ L A D +V+VL ATN PW +DEA
Sbjct: 482 SILSARNDSGNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEA 541
Query: 240 MLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRL------YSGREIA 293
R R Y+PLP+ + + HL + ++ + L +E ++ L YSG +I
Sbjct: 542 ARRRFVKRTYIPLPEKETRYK----HLSHLLHN-QVHCLTEEDLEELVNLTEGYSGSDIT 596
Query: 294 NVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKK 353
+ K A M L L D L ++ + P++L+ FK ++ I+ +++ + +
Sbjct: 597 ALAKDAAMGPLR----NLGDALLTTSAE----MIPPISLNHFKASLRTIRPSVSQEGIHR 648
Query: 354 YERWAKEF 361
YE W K+F
Sbjct: 649 YEEWNKQF 656
>sp|P40328|TBP6_YEAST PROBABLE 26S PROTEASE SUBUNIT YTA6 (TAT-BINDING HOMOLOG 6)
>gi|531761|emb|CAA56959.1| (X81071) probable regulatory
subunit of 26S protease [Saccharomyces cerevisiae]
Length = 446
Score = 157 bits (392), Expect = 2e-37
Identities = 93/250 (37%), Positives = 143/250 (57%), Gaps = 26/250 (10%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLA 138
L+ + W DI GLR AK + +A+ + + EP +G+LLFGPPGTGK+++A
Sbjct: 166 LVTDEKVYWEDIAGLRNAKNSLKEAVVYPFLRPDLFKGLREPVRGMLLFGPPGTGKTMIA 225
Query: 139 SAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDS-LTMKRV 197
AVA N+TFFSV AS LLSKY GES KL+ ALF +A++LSPS+IFIDE+DS LT +
Sbjct: 226 KAVATESNSTFFSVSASSLLSKYLGESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSD 285
Query: 198 SLDDAARRMIGTLLAEMDGFKER-----------KDKVIVLTATNAPWDLDEAMLSRLPI 246
+ ++++RR+ LL + +V+VL ATN PW +D+A R
Sbjct: 286 NENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARRRFSR 345
Query: 247 RIYVPLPDVNSAVEIFKIHLRGI--HYDVPLSRLAKEAVKRL---YSGREIANVVKLATM 301
++Y+PLPD + + HL+ + L L E + + +SG ++ ++ K A M
Sbjct: 346 KLYIPLPDYETRL----YHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAM 401
Query: 302 KMLEEMNPEL 311
+ + ++ +L
Sbjct: 402 EPIRDLGDKL 411
>sp|Q58576|PRS1_METJA PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) (26S PROTEASE REGULATORY
SUBUNIT HOMOLOG) >gi|2127779|pir||G64446 ATP-dependent
26S proteosome regulatory subunit 4 homolog -
Methanococcus jannaschii >gi|1591803|gb|AAB99179.1|
(U67559) proteasome regulatory AAA-ATPase [Methanococcus
jannaschii]
Length = 430
Score = 157 bits (392), Expect = 2e-37
Identities = 107/281 (38%), Positives = 152/281 (54%), Gaps = 36/281 (12%)
Query: 76 EYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGP 129
+Y K + +R + + DIGGL + + I + + L + K IEPP+GILL+GP
Sbjct: 153 DYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGP 212
Query: 130 PGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEV 189
PGTGK+LLA AVA NATF V S+L+ K+ GE + L+ +F LA++ +PS+IFIDE+
Sbjct: 213 PGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEI 272
Query: 190 DSLTMKRVSL----DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SR 243
D++ KR D +R + LLAEMDGF R D V ++ ATN P LD A+L R
Sbjct: 273 DAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD-VKIIGATNRPDILDPAILRPGR 331
Query: 244 LPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATM 301
I VP PD +EI KIH R ++ DV L +AK + G E+ + A M
Sbjct: 332 FDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAK--MTEGCVGAELKAICTEAGM 389
Query: 302 KMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARI 342
+ E+ RD +T+DDF+ A+ +I
Sbjct: 390 NAIREL---------------RDY----VTMDDFRKAVEKI 411
>pir||T39584 hypothetical protein SPBC16E9.10c - fission yeast
(Schizosaccharomyces pombe) >gi|2467272|emb|CAB16902.1|
(Z99759) AAA ATPase [Schizosaccharomyces pombe]
Length = 779
Score = 156 bits (391), Expect = 3e-37
Identities = 103/292 (35%), Positives = 158/292 (53%), Gaps = 28/292 (9%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
++WN+IG L+ + + AI I + I P G+LL+GPPG GK+LLA AVAN
Sbjct: 489 VSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVAN 548
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDA 202
A F S++ +LL+KY GES + + +F AR SP VIF DE+D++ +R SL +A
Sbjct: 549 ESKANFISIRGPELLNKYVGESERAVRQVFLRARASSPCVIFFDELDAMVPRRDDSLSEA 608
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVE 260
+ R++ TLL E+DG +R V V+ ATN P +D AML RL + V LPD + VE
Sbjct: 609 SSRVVNTLLTELDGLSDRSG-VYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVE 667
Query: 261 IFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM--------NPE 310
I K + +H +V L L ++ +SG ++A +V+ A + L PE
Sbjct: 668 ILKTLTKQTPLHEEVNLDVLGRDERCSNFSGADLAALVREAAVTALRSAVFADIASNEPE 727
Query: 311 LSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFA 362
++ + ++ +T DF+ A IK ++ D +KY+R AK ++
Sbjct: 728 ITQHSALEPIR--------VTNADFELAFKNIKPSVSDRDRQKYQRLAKRWS 771
Score = 115 bits (286), Expect = 6e-25
Identities = 86/263 (32%), Positives = 138/263 (51%), Gaps = 21/263 (7%)
Query: 68 RKRREGKNEYFDKLKALIKR---STITWNDIGGLREAKKLIAQAIGLSIAKSP------- 117
RK R K + KA R S I+ +DIGGL + + + + + I K P
Sbjct: 146 RKDRRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCINELLELVAMPI-KHPEVYQYTG 204
Query: 118 IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLAR 177
I PP+G+LL GPPG GK++LA+A+AN L F S+ A ++S GES K + +F A+
Sbjct: 205 IHPPRGVLLHGPPGCGKTMLANALANELGVPFISISAPSIVSGMSGESEKKVREVFEEAK 264
Query: 178 QLSPSVIFIDEVDSLTMKRVSLD-DAARRMIGTLLAEMD--GFKERKDK-VIVLTATNAP 233
L+P ++FIDE+D++T KR S + RR++ L MD F++ K V+V+ ATN P
Sbjct: 265 SLAPCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNRP 324
Query: 234 WDLDEAM--LSRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSG 289
LD A+ R I + +P ++ +I + +G+ D +LAK+ Y G
Sbjct: 325 DSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPG--YVG 382
Query: 290 REIANVVKLATMKMLEEMNPELS 312
++ + A + ++ + E+S
Sbjct: 383 ADLKALTAAAGIIAIKRIFNEIS 405
>gi|11545833 fidgetin-like 1 [Homo sapiens] >gi|10434929|dbj|BAB14426.1|
(AK023142) unnamed protein product [Homo sapiens]
Length = 674
Score = 156 bits (391), Expect = 3e-37
Identities = 97/287 (33%), Positives = 161/287 (55%), Gaps = 29/287 (10%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVANS 144
+ W DI G+ AK I + + + + I PP+GILLFGPPGTGK+L+ +A+
Sbjct: 398 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 457
Query: 145 LNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DAA 203
ATFFS+ AS L SK+ GE K++ ALF++AR P+VIFIDE+DSL +R + +++
Sbjct: 458 SGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESS 517
Query: 204 RRMIGTLLAEMDG-FKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIF 262
RR+ L ++DG +D+++V+ ATN P ++DEA RL R+Y+PLP+ ++ +I
Sbjct: 518 RRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIV 577
Query: 263 KIHLRGIHYDVPLSRLAKEAVKR--LYSGREIANVVKLATMKMLEEMNPELSDPLRVSTL 320
I+L ++ V++ +SG ++ + + A++ P+R +L
Sbjct: 578 -INLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCRGASL-----------GPIR--SL 623
Query: 321 KGRDLTT------RPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
+ D+ T RP+ DF+ A ++ ++ D++ YE W K F
Sbjct: 624 QTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTF 670
>sp|P54812|TER2_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 (P97/CDC48
HOMOLOG 2) >gi|7497271|pir||T19879 hypothetical protein
C41C4.8 - Caenorhabditis elegans
>gi|3874892|emb|CAA88105.1| (Z48045) contains similarity
to Pfam domain: PF00004 (ATPases associated with various
cellular activities (AAA)), Score=656.9,
E-value=3.5e-194, N=2~cDNA EST EMBL:M89239 comes from
this gene; cDNA EST yk9e6.3 comes from this gene~cDNA
EST yk9e6.5 comes> >gi|3875715|emb|CAA88314.1| (Z48334)
contains similarity to Pfam domain: PF00004 (ATPases
associated with various cellular activities (AAA)),
Score=656.9, E-value=3.5e-194, N=2~cDNA EST EMBL:M89239
comes from this gene; cDNA EST yk9e6.3 comes from this
gene~cDNA EST yk9e6.5 comes>
Length = 810
Score = 156 bits (390), Expect = 4e-37
Identities = 110/313 (35%), Positives = 172/313 (54%), Gaps = 31/313 (9%)
Query: 73 GKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILL 126
GK+ +A+++ TW+DIGGL+ K+ + + + + K ++P +G+L
Sbjct: 462 GKSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLF 521
Query: 127 FGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFI 186
+GPPG GK+LLA A+AN A F S+K +LL+ +FGES + +F AR +P V+F
Sbjct: 522 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFF 581
Query: 187 DEVDSLTMKR-VSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
DE+DS+ R S+ D AA R+I +L EMDG +K+ V ++ ATN P +D A+L
Sbjct: 582 DELDSIAKARGGSVGDAGGAADRVINQVLTEMDGMNAKKN-VFIIGATNRPDIIDPAVLR 640
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANV--- 295
RL IY+PLPD S ++IFK LR + D+ L+ LAK V +SG ++ +
Sbjct: 641 PGRLDQLIYIPLPDEASRLQIFKASLRKTPLSADLDLNFLAKNTVG--FSGADLTEICQR 698
Query: 296 -VKLATMKMLE-EMNPELSDPLRVSTLKGRDLTTRPL-------TLDDFKYAMARIKSPI 346
KLA + +E E+ E R + +G +L L T F+ AM + +
Sbjct: 699 ACKLAIRESIEREIRQEKERQDR--SARGEELMEDELADPVPEITRAHFEEAMKFARRSV 756
Query: 347 TKSDVKKYERWAK 359
T +D++KYE +A+
Sbjct: 757 TDNDIRKYEMFAQ 769
Score = 139 bits (347), Expect = 4e-32
Identities = 87/263 (33%), Positives = 147/263 (55%), Gaps = 16/263 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++D+GG+R+ I + + L + ++PP+GILLFGPPGTGK+L+A AVAN
Sbjct: 206 VGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVAN 265
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
A FF + +++SK GES + F+ + SP+++FIDE+D++ KR +
Sbjct: 266 ETGAFFFLINGPEIMSKMSGESESNLRKAFAECEKNSPAILFIDEIDAIAPKREKAHGEV 325
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
+R++ LL MDG K R V+V+ ATN P +D A+ R I + +PD +E
Sbjct: 326 EKRIVSQLLTLMDGLKTRA-HVVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLE 384
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH + + DV L ++A E + G ++A++ A ++ + E EL D L
Sbjct: 385 ILRIHTKNMKLGEDVDLEQVANEC--HGFVGADLASLCSEAAIQQIRE-KMELID-LEDD 440
Query: 319 TLKGRDLTTRPLTLDDFKYAMAR 341
T+ L + +T+++F++AM +
Sbjct: 441 TIDAEVLNSLAVTMENFRFAMGK 463
>gi|6678559 valosin containing protein; homolog of yeast cdc48 (S. cerevisiae)
[Mus musculus] >gi|400712|sp|Q01853|TERA_MOUSE
TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE)
(15S MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING
PROTEIN) (VCP) [CONTAINS: VALOSIN]
>gi|284979|pir||S25197 transitional endoplasmic
reticulum ATPase - mouse >gi|55217|emb|CAA78412.1|
(Z14044) murine valosin-containing protein [Mus
musculus]
Length = 806
Score = 155 bits (389), Expect = 5e-37
Identities = 104/298 (34%), Positives = 165/298 (54%), Gaps = 23/298 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ +TW DIGGL + K+ + + + + K + P +G+L +GPPG GK+
Sbjct: 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 525
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F S+K +LL+ +FGES + +F ARQ +P V+F DE+DS+
Sbjct: 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585
Query: 196 R-VSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R ++ D AA R+I +L EMDG +K+ V ++ ATN P +D A+L RL IY
Sbjct: 586 RGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLIY 644
Query: 250 VPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANV----VKLATMKM 303
+PLPD S V I K +LR + DV L LAK + +SG ++ + KLA +
Sbjct: 645 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK--MTNGFSGADLTEICQRACKLAIRES 702
Query: 304 LE-EMNPELSDPLRVSTLKGRDLTTRP-LTLDDFKYAMARIKSPITKSDVKKYERWAK 359
+E E+ E S ++ + P + D F+ AM + ++ +D++KYE +A+
Sbjct: 703 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760
Score = 138 bits (344), Expect = 1e-31
Identities = 86/263 (32%), Positives = 147/263 (55%), Gaps = 16/263 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++D+GG R+ I + + L + ++PP+GILL+GPPGTGK+L+A AVAN
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
A FF + +++SK GES + F A + +P++IFIDE+D++ KR +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K+R VIV+ ATN P +D A+ R + + +PD +E
Sbjct: 321 ERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH + + DV L ++A E + G ++A + A ++ + + +L D L
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANET--HGHVGADLAALCSEAALQAIRK-KMDLID-LEDE 435
Query: 319 TLKGRDLTTRPLTLDDFKYAMAR 341
T+ + + +T+DDF++A+++
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQ 458
>pir||VPPG transitional endoplasmic reticulum ATPase - pig
>gi|225450|prf||1303334A valosin precursor [Sus scrofa
domestica]
Length = 806
Score = 155 bits (389), Expect = 5e-37
Identities = 104/298 (34%), Positives = 165/298 (54%), Gaps = 23/298 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ +TW DIGGL + K+ + + + + K + P +G+L +GPPG GK+
Sbjct: 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 525
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F S+K +LL+ +FGES + +F ARQ +P V+F DE+DS+
Sbjct: 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585
Query: 196 R-VSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R ++ D AA R+I +L EMDG +K+ V ++ ATN P +D A+L RL IY
Sbjct: 586 RGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLIY 644
Query: 250 VPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANV----VKLATMKM 303
+PLPD S V I K +LR + DV L LAK + +SG ++ + KLA +
Sbjct: 645 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK--MTNGFSGADLTEICQRACKLAIRES 702
Query: 304 LE-EMNPELSDPLRVSTLKGRDLTTRP-LTLDDFKYAMARIKSPITKSDVKKYERWAK 359
+E E+ E S ++ + P + D F+ AM + ++ +D++KYE +A+
Sbjct: 703 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760
Score = 138 bits (345), Expect = 8e-32
Identities = 87/263 (33%), Positives = 147/263 (55%), Gaps = 16/263 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++DIGG R+ I + + L + ++PP+GILL+GPPGTGK+L+A AVAN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
A FF + +++SK GES + F A + +P++IFIDE+D++ KR +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K+R VIV+ ATN P +D A+ R + + +PD +E
Sbjct: 321 ERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH + + DV L ++A E + G ++A + A ++ + + +L D L
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANET--HGHVGADLAALCSEAALQAIRK-KMDLID-LEDE 435
Query: 319 TLKGRDLTTRPLTLDDFKYAMAR 341
T+ + + +T+DDF++A+++
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQ 458
>sp|P46462|TERA_RAT TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING PROTEIN)
(VCP) [CONTAINS: VALOSIN] >gi|1083817|pir||A55190
transitional endoplasmic reticulum ATPase (EC 3.6.1.-)
[validated] - rat >gi|641973|gb|AAC52154.1| (U11760)
transitional endoplasmic reticulum ATPase [Rattus
norvegicus] >gi|1093322|prf||2103265A transitional
endoplasmic reticulum ATPase [Rattus norvegicus]
Length = 806
Score = 155 bits (389), Expect = 5e-37
Identities = 104/298 (34%), Positives = 165/298 (54%), Gaps = 23/298 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ +TW DIGGL + K+ + + + + K + P +G+L +GPPG GK+
Sbjct: 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 525
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F S+K +LL+ +FGES + +F ARQ +P V+F DE+DS+
Sbjct: 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585
Query: 196 R-VSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R ++ D AA R+I +L EMDG +K+ V ++ ATN P +D A+L RL IY
Sbjct: 586 RGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLIY 644
Query: 250 VPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANV----VKLATMKM 303
+PLPD S V I K +LR + DV L LAK + +SG ++ + KLA +
Sbjct: 645 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK--MTNGFSGADLTEICQRACKLAIRES 702
Query: 304 LE-EMNPELSDPLRVSTLKGRDLTTRP-LTLDDFKYAMARIKSPITKSDVKKYERWAK 359
+E E+ E S ++ + P + D F+ AM + ++ +D++KYE +A+
Sbjct: 703 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760
Score = 138 bits (345), Expect = 8e-32
Identities = 87/263 (33%), Positives = 147/263 (55%), Gaps = 16/263 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++DIGG R+ I + + L + ++PP+GILL+GPPGTGK+L+A AVAN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
A FF + +++SK GES + F A + +P++IFIDE+D++ KR +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K+R VIV+ ATN P +D A+ R + + +PD +E
Sbjct: 321 ERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH + + DV L ++A E + G ++A + A ++ + + +L D L
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANET--HGHVGADLAALCSEAALQAIRK-KMDLID-LEDE 435
Query: 319 TLKGRDLTTRPLTLDDFKYAMAR 341
T+ + + +T+DDF++A+++
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQ 458
>gi|6005942 valosin-containing protein [Homo sapiens]
>gi|11429568|ref|XP_005631.1| valosin-containing protein
[Homo sapiens] >gi|6094447|sp|P55072|TERA_HUMAN
TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE)
(15S MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING
PROTEIN) (VCP) [CONTAINS: VALOSIN]
>gi|7435756|pir||T02243 probable transitional
endoplasmic reticulum ATPase - human
>gi|2984586|gb|AAC07984.1| (AC004472) TERA_HUMAN [Homo
sapiens] >gi|5410290|gb|AAD43016.1| (AF100752)
transitional endoplasmic reticulum ATPase [Homo sapiens]
Length = 806
Score = 155 bits (389), Expect = 5e-37
Identities = 104/298 (34%), Positives = 165/298 (54%), Gaps = 23/298 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ +TW DIGGL + K+ + + + + K + P +G+L +GPPG GK+
Sbjct: 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 525
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F S+K +LL+ +FGES + +F ARQ +P V+F DE+DS+
Sbjct: 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585
Query: 196 R-VSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R ++ D AA R+I +L EMDG +K+ V ++ ATN P +D A+L RL IY
Sbjct: 586 RGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLIY 644
Query: 250 VPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANV----VKLATMKM 303
+PLPD S V I K +LR + DV L LAK + +SG ++ + KLA +
Sbjct: 645 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK--MTNGFSGADLTEICQRACKLAIRES 702
Query: 304 LE-EMNPELSDPLRVSTLKGRDLTTRP-LTLDDFKYAMARIKSPITKSDVKKYERWAK 359
+E E+ E S ++ + P + D F+ AM + ++ +D++KYE +A+
Sbjct: 703 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760
Score = 138 bits (345), Expect = 8e-32
Identities = 87/263 (33%), Positives = 147/263 (55%), Gaps = 16/263 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++DIGG R+ I + + L + ++PP+GILL+GPPGTGK+L+A AVAN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
A FF + +++SK GES + F A + +P++IFIDE+D++ KR +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K+R VIV+ ATN P +D A+ R + + +PD +E
Sbjct: 321 ERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH + + DV L ++A E + G ++A + A ++ + + +L D L
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANET--HGHVGADLAALCSEAALQAIRK-KMDLID-LEDE 435
Query: 319 TLKGRDLTTRPLTLDDFKYAMAR 341
T+ + + +T+DDF++A+++
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQ 458
>pir||T06669 hypothetical protein F6I7.60 - Arabidopsis thaliana
>gi|4678264|emb|CAB41125.1| (AL049657) putative protein
[Arabidopsis thaliana] >gi|7269336|emb|CAB79395.1|
(AL161562) putative protein [Arabidopsis thaliana]
Length = 442
Score = 155 bits (389), Expect = 5e-37
Identities = 94/291 (32%), Positives = 166/291 (56%), Gaps = 23/291 (7%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSPI-------EPPQGILLFGPPGTGKSLLASAVA 142
+T++DIG L + K ++ + + L + + + +P +GILLFGPPGTGK++LA AVA
Sbjct: 137 VTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPGTGKTMLAKAVA 196
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR--VSLD 200
+A F ++ S + SK+FGE K + A+FSLA ++SPSVIF+DEVDS+ +R
Sbjct: 197 KEADANFINISMSSITSKWFGEGEKYVKAVFSLASKMSPSVIFVDEVDSMLGRREHPREH 256
Query: 201 DAARRMIGTLLAEMDGF-KERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAV 259
+A+R++ + DG + +++V+VL ATN P+DLDEA++ RLP R+ V LPD ++
Sbjct: 257 EASRKIKNEFMMHWDGLTTQERERVLVLAATNRPFDLDEAVIRRLPRRLMVGLPDTSNRA 316
Query: 260 EIFKIHL--RGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRV 317
I K+ L + D+ + +A ++ YSG ++ N+ A + ++E+ +
Sbjct: 317 FILKVILAKEDLSPDLDIGEIA--SMTNGYSGSDLKNLCVTAAHRPIKEILEKEKRERDA 374
Query: 318 STLKGR-------DLTTRPLTLDDFKYAMARIKSPIT--KSDVKKYERWAK 359
+ +G+ R L ++DF+ A + + ++ + + ++W K
Sbjct: 375 ALAQGKVPPPLSGSSDLRALNVEDFRDAHKWVSASVSSESATMTALQQWNK 425
>pir||T46437 hypothetical protein DKFZp434K0126.1 - human (fragment)
>gi|6807907|emb|CAB70717.1| (AL137377) hypothetical
protein [Homo sapiens]
Length = 431
Score = 155 bits (389), Expect = 5e-37
Identities = 104/298 (34%), Positives = 165/298 (54%), Gaps = 23/298 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ +TW DIGGL + K+ + + + + K + P +G+L +GPPG GK+
Sbjct: 91 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 150
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F S+K +LL+ +FGES + +F ARQ +P V+F DE+DS+
Sbjct: 151 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 210
Query: 196 R-VSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R ++ D AA R+I +L EMDG +K+ V ++ ATN P +D A+L RL IY
Sbjct: 211 RGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLIY 269
Query: 250 VPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANV----VKLATMKM 303
+PLPD S V I K +LR + DV L LAK + +SG ++ + KLA +
Sbjct: 270 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK--MTNGFSGADLTEICQRACKLAIRES 327
Query: 304 LE-EMNPELSDPLRVSTLKGRDLTTRP-LTLDDFKYAMARIKSPITKSDVKKYERWAK 359
+E E+ E S ++ + P + D F+ AM + ++ +D++KYE +A+
Sbjct: 328 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 385
>sp|P03974|TERA_PIG TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) (VALOSIN CONTAINING PROTEIN)
(VCP) [CONTAINS: VALOSIN (PEPTIDE VQY)]
>gi|164726|gb|AAA31142.1| (M30143) valosin-containing
protein [Sus scrofa]
Length = 806
Score = 155 bits (387), Expect = 9e-37
Identities = 104/298 (34%), Positives = 164/298 (54%), Gaps = 23/298 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ +TW DIGGL + K+ + + + K + P +G+L +GPPG GK+
Sbjct: 466 ETVVEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 525
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F S+K +LL+ +FGES + +F ARQ +P V+F DE+DS+
Sbjct: 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585
Query: 196 R-VSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R ++ D AA R+I +L EMDG +K+ V ++ ATN P +D A+L RL IY
Sbjct: 586 RGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLIY 644
Query: 250 VPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANV----VKLATMKM 303
+PLPD S V I K +LR + DV L LAK + +SG ++ + KLA +
Sbjct: 645 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK--MTNGFSGADLTEICQRACKLAIRES 702
Query: 304 LE-EMNPELSDPLRVSTLKGRDLTTRP-LTLDDFKYAMARIKSPITKSDVKKYERWAK 359
+E E+ E S ++ + P + D F+ AM + ++ +D++KYE +A+
Sbjct: 703 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760
Score = 138 bits (345), Expect = 8e-32
Identities = 87/263 (33%), Positives = 147/263 (55%), Gaps = 16/263 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++DIGG R+ I + + L + ++PP+GILL+GPPGTGK+L+A AVAN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
A FF + +++SK GES + F A + +P++IFIDE+D++ KR +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K+R VIV+ ATN P +D A+ R + + +PD +E
Sbjct: 321 ERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH + + DV L ++A E + G ++A + A ++ + + +L D L
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANET--HGHVGADLAALCSEAALQAIRK-KMDLID-LEDE 435
Query: 319 TLKGRDLTTRPLTLDDFKYAMAR 341
T+ + + +T+DDF++A+++
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQ 458
>dbj|BAB09730.1| (AB015476) 26S proteasome regulatory particle chain RPT6-like
protein [Arabidopsis thaliana]
Length = 403
Score = 155 bits (387), Expect = 9e-37
Identities = 106/307 (34%), Positives = 166/307 (53%), Gaps = 27/307 (8%)
Query: 55 EEAKKWEEKAKNVRKRREGK----NEYFDKLKALIKRST---ITWNDIGGLREAKKLIAQ 107
+ AKK E + + KR N+Y D + + + + IGGL K+ + +
Sbjct: 42 DAAKKSLEHKREIAKRLGRPLIQTNQYEDVIACDVINPLHIDVEFGSIGGLESIKQALYE 101
Query: 108 AIGLSIAKSPI-------EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSK 160
+ L + + + P +G+LL+GPPGTGK++LA A+A A F +VK S+L+SK
Sbjct: 102 LVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIARESEAVFINVKVSNLMSK 161
Query: 161 YFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAARRMIGT-LLAEMDGF-K 218
+FG++ KL+SA+FSLA +L P++IFIDEVDS +R S D+ A + T +A DGF
Sbjct: 162 WFGDAQKLVSAVFSLAYKLQPAIIFIDEVDSFLGQRRSTDNEAMSNMKTEFMALWDGFTT 221
Query: 219 ERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRG--IHYDVPLS 276
++ +V+VL ATN P +LDEA+L R P + +PD +I K+ L+G + D+
Sbjct: 222 DQNARVMVLAATNRPSELDEAILRRFPQSFEIGMPDCQERAQILKVVLKGESVESDINYD 281
Query: 277 RLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFK 336
R+A+ + Y+G +I + K A + E+ + RVS RPLT D +
Sbjct: 282 RIAR--LCEDYTGSDIFELCKKAAYFPIREILEAEKEGKRVS-------VPRPLTQLDLE 332
Query: 337 YAMARIK 343
+A K
Sbjct: 333 KVLATSK 339
>pir||G71242 probable 26S proteinase regulatory subunit - Pyrococcus horikoshii
>gi|3256587|dbj|BAA29270.1| (AP000001) 399aa long
hypothetical 26S protease regulatory subunit [Pyrococcus
horikoshii]
Length = 399
Score = 154 bits (386), Expect = 1e-36
Identities = 93/230 (40%), Positives = 138/230 (59%), Gaps = 19/230 (8%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSL 136
+I+R +T+NDIGGL++ + + +AI L + K P I+PP+G+LL+GPPG GK+L
Sbjct: 131 VIERPNVTYNDIGGLKKQLQELREAIELPL-KHPELFEEVGIDPPKGVLLYGPPGCGKTL 189
Query: 137 LASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR 196
+A A+A+ +NATF V S+L+ KY GE ++L+ LF LA++ +P++IFIDE+D++ KR
Sbjct: 190 MAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKR 249
Query: 197 VSLDDAARRMIG----TLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYV 250
+ R + LLAEMDGF R V V+ ATN P LD A+L R I V
Sbjct: 250 MDETTGGEREVNRTLMQLLAEMDGFDPR-GNVKVIAATNRPDILDPALLRPGRFDRLIEV 308
Query: 251 PLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLAT 300
PLPD +EI K+H R + L + A+ + G A++ +AT
Sbjct: 309 PLPDFEGRLEILKVHTR----RMKLKGVDLRAIAEMTEGASGADLKAIAT 354
>gb|AAB40928.2| (U83085) cell division cycle protein 48 [Dictyostelium discoideum]
Length = 793
Score = 154 bits (386), Expect = 1e-36
Identities = 101/299 (33%), Positives = 160/299 (52%), Gaps = 24/299 (8%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ T TW DIGGL K+ + + + + K ++P +G+L +GPPG GK+
Sbjct: 464 ETVVEVPTTTWEDIGGLEGVKRELRETVQYPVEHPEKFRKFGMQPSKGVLFYGPPGCGKT 523
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F S+K +LL+ +FGES + LF ARQ +P V+F DE+DS+
Sbjct: 524 LLAKAIANECQANFISIKGPELLTMWFGESEANVRELFDKARQAAPCVLFFDELDSIARS 583
Query: 196 RVS----LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R S A R+I +L EMDG +K+ V ++ ATN P +D A+L RL IY
Sbjct: 584 RGSSQGDAGGAGDRVINQILTEMDGMNAKKN-VFIIGATNRPDIIDPAILRPGRLDQLIY 642
Query: 250 VPLPDVNSAVEIFK--IHLRGIHYDVPLSRLAKEAVKRLYSGREIANV----VKLATMKM 303
+PLPD+ S V I K ++ + DV L L ++ + +SG ++ + KLA +
Sbjct: 643 IPLPDLPSRVAILKACLNKSPVAKDVDLEFLGQKT--QGFSGADLTEICQRACKLAIRES 700
Query: 304 LEEMNPELSDPLRVSTLKGRDLTTRP---LTLDDFKYAMARIKSPITKSDVKKYERWAK 359
+E+ K D + P +T D F+ AM + ++ +D++KYE +A+
Sbjct: 701 IEKDIESTKARQESGDTKMEDDSVDPVPEITRDHFQEAMRSARRSVSDNDIRKYESFAQ 759
Score = 134 bits (334), Expect = 1e-30
Identities = 87/261 (33%), Positives = 138/261 (52%), Gaps = 16/261 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++DIGG+R+ I + + L + ++PP+GILL+GPPG GK+++A AVAN
Sbjct: 199 VGYDDIGGVRKQLGQIRELVELPLRHPQLFKNIGVKPPKGILLYGPPGCGKTMIARAVAN 258
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DA 202
A FF + +++SK GES + F A + +PS+IFIDE+DS+ KR +
Sbjct: 259 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTQGEV 318
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K R VIV+ ATN P +D A+ R I + +PD +E
Sbjct: 319 ERRIVSQLLTLMDGLKSRA-HVIVMGATNRPNSIDPALRRFGRFDREIDITIPDATGRLE 377
Query: 261 IFKIHLRGIHYD--VPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH + + D V L +A E Y G ++A + + ++ + E + L
Sbjct: 378 IMRIHTKNMKLDETVDLEAVANET--HGYVGADLAALCTESALQCIREKMDVID--LEDE 433
Query: 319 TLKGRDLTTRPLTLDDFKYAM 339
T+ L + +T D F+ A+
Sbjct: 434 TISAEILESMSVTQDHFRTAL 454
>pir||H75207 26s proteinase regulatory chain 4 PAB2233 - Pyrococcus abyssi
(strain Orsay) >gi|5457620|emb|CAB49111.1| (AJ248283)
26S protease regulatory subunit 4 [Pyrococcus abyssi]
Length = 399
Score = 153 bits (384), Expect = 2e-36
Identities = 92/230 (40%), Positives = 137/230 (59%), Gaps = 19/230 (8%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSL 136
+I+R +T+NDIGGL++ + + +AI L + K P I+PP+G+LL+GPPG GK+L
Sbjct: 131 VIERPNVTYNDIGGLKKQLQELREAIELPL-KHPELFEEVGIDPPKGVLLYGPPGCGKTL 189
Query: 137 LASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR 196
+A A+A+ +NATF V S+L+ KY GE ++L+ LF LA++ +P++IFIDE+D++ KR
Sbjct: 190 MAKALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKR 249
Query: 197 VSLDDAARRMIG----TLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYV 250
+ R + LLAEMDGF R V V+ ATN P LD A+L R I V
Sbjct: 250 MDETTGGEREVNRTLMQLLAEMDGFDPR-GNVKVIAATNRPDILDPALLRPGRFDRLIEV 308
Query: 251 PLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLAT 300
PLPD +EI K+H R + L + + + G A++ +AT
Sbjct: 309 PLPDFEGRLEILKVHTR----RMKLKNVDLRVIAEITEGASGADLKAIAT 354
>gi|6320077 microsomal ATPase; Cdc48p [Saccharomyces cerevisiae]
>gi|1705679|sp|P25694|CC48_YEAST CELL DIVISION CONTROL
PROTEIN 48 >gi|2118116|pir||S67669 transitional
endoplasmic reticulum ATPase [validated] - yeast
(Saccharomyces cerevisiae) >gi|1431189|emb|CAA98694.1|
(Z74174) ORF YDL126c [Saccharomyces cerevisiae]
>gi|1449400|emb|CAA40276.1| (X56956) CDC48p
[Saccharomyces cerevisiae]
Length = 835
Score = 153 bits (383), Expect = 3e-36
Identities = 100/309 (32%), Positives = 165/309 (53%), Gaps = 31/309 (10%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSI------AKSPIEPPQGILLFGPPGTGKS 135
+ +++ +TW+D+GGL E K+ + + + + K + P +G+L +GPPGTGK+
Sbjct: 476 ETVVESVNVTWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGKT 535
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA AVA ++A F SVK +LLS ++GES I +F AR +P+V+F+DE+DS+
Sbjct: 536 LLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAKA 595
Query: 196 R-VSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R SL D A+ R++ LL EMDG +K+ V V+ ATN P +D A+L RL IY
Sbjct: 596 RGGSLGDAGGASDRVVNQLLTEMDGMNAKKN-VFVIGATNRPDQIDPAILRPGRLDQLIY 654
Query: 250 VPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE--- 306
VPLPD N+ + I LR + L A + +SG ++ +V+ A +++
Sbjct: 655 VPLPDENARLSILNAQLRKTPLEPGLELTAIAKATQGFSGADLLYIVQRAAKYAIKDSIE 714
Query: 307 --MNPELSDPLRVS------TLKGRDLTTRP-------LTLDDFKYAMARIKSPITKSDV 351
E ++V T +G P +T + F AM K ++ +++
Sbjct: 715 AHRQHEAEKEVKVEGEDVEMTDEGAKAEQEPEVDPVPYITKEHFAEAMKTAKRSVSDAEL 774
Query: 352 KKYERWAKE 360
++YE ++++
Sbjct: 775 RRYEAYSQQ 783
Score = 141 bits (353), Expect = 9e-33
Identities = 89/261 (34%), Positives = 145/261 (55%), Gaps = 16/261 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++DIGG R+ I + + L + I+PP+G+L++GPPGTGK+L+A AVAN
Sbjct: 211 VGYDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGTGKTLMARAVAN 270
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DA 202
A FF + +++SK GES + F A + +P++IFIDE+DS+ KR + +
Sbjct: 271 ETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTNGEV 330
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K R + V+V+ ATN P +D A+ R + + +PD +E
Sbjct: 331 ERRVVSQLLTLMDGMKARSN-VVVIAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 389
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
+ +IH + + DV L LA E Y G +IA++ A M+ + E +L D L
Sbjct: 390 VLRIHTKNMKLADDVDLEALAAET--HGYVGADIASLCSEAAMQQIRE-KMDLID-LDED 445
Query: 319 TLKGRDLTTRPLTLDDFKYAM 339
+ L + +T+D+F++A+
Sbjct: 446 EIDAEVLDSLGVTMDNFRFAL 466
>sp|P23787|TERA_XENLA TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S
MG(2+)-ATPASE P97 SUBUNIT) >gi|104084|pir||S19738
transitional endoplasmic reticulum ATPase (EC 3.6.1.-)
97K chain - African clawed frog
>gi|64966|emb|CAA38146.1| (X54240) p97 subunit of 15S
Mg(2+)- ATPase [Xenopus laevis]
Length = 805
Score = 153 bits (382), Expect = 4e-36
Identities = 102/298 (34%), Positives = 165/298 (55%), Gaps = 23/298 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ +TW DIGGL + K+ + + + + K + P +G+L +GPPG GK+
Sbjct: 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 525
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F S+K +LL+ +FGES + +F ARQ +P V+F DE+DS+
Sbjct: 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585
Query: 196 R-VSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R ++ D AA R+I +L EMDG +K+ V ++ ATN P +D A+L RL IY
Sbjct: 586 RGGNIGDGGGAADRVINQILTEMDGMSIKKN-VFIIGATNRPDIIDPAILRPGRLDQLIY 644
Query: 250 VPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANV----VKLATMKM 303
+PLPD S + I K +LR + DV + LAK + +SG ++ + KLA +
Sbjct: 645 IPLPDEKSRMAILKANLRKSPVAKDVDVDFLAK--MTNGFSGADLTEICQRACKLAIRES 702
Query: 304 LE-EMNPELSDPLRVSTLKGRDLTTRP-LTLDDFKYAMARIKSPITKSDVKKYERWAK 359
+E E+ E S ++ + P + D F+ AM + ++ +D++KYE +A+
Sbjct: 703 IENEIRRERDRQTNPSAMEVEEDDPVPEIRRDHFEEAMRLARRSVSDNDIRKYEMFAQ 760
Score = 136 bits (339), Expect = 4e-31
Identities = 86/263 (32%), Positives = 146/263 (54%), Gaps = 16/263 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++DIGG R+ I + + L + ++PP+GILL+GPPGTGK+L+A AVAN
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
A FF + +++SK GES + F A + +P++IFIDE+D++ KR +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K+R VIV+ ATN P +D A+ R + + +PD +E
Sbjct: 321 ERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDSTGRLE 379
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH + + DV L ++A E + G ++A + A ++ + + +L D L
Sbjct: 380 ILQIHTKNMKLSDDVDLEQVANET--HGHVGADLAALCSEAALQAIRK-KMDLID-LEDE 435
Query: 319 TLKGRDLTTRPLTLDDFKYAMAR 341
T+ + + +T+DDF++ +++
Sbjct: 436 TIDAEVMNSLAVTMDDFRWGLSQ 458
>pir||T02901 MSP1 protein homolog T13J8.110 - Arabidopsis thaliana
>gi|4455359|emb|CAB36769.1| (AL035524) putative protein
[Arabidopsis thaliana] >gi|7269654|emb|CAB79602.1|
(AL161572) putative protein [Arabidopsis thaliana]
Length = 726
Score = 152 bits (381), Expect = 5e-36
Identities = 106/348 (30%), Positives = 176/348 (50%), Gaps = 59/348 (16%)
Query: 42 IASENLSLSHILLEEAKKWEEKAKNVRKRREGK-----NEYFDKLKALIKRST---ITWN 93
I+S +LS +L+E + E + + + K NE+ +++ + + +T+
Sbjct: 355 ISSNSLSHGLNILQEGQGCFEDSLKLDTNIDSKEVAPDNEFEKRIRPEVIPANEIGVTFA 414
Query: 94 DIGGLREAKKLIAQAIGLSIAKSPI------EPPQGILLFGPPGTGKSLLASAVANSLNA 147
DIG L E K+ + + + L + + + +P +GILLFGPPGTGK+++A A+AN A
Sbjct: 415 DIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMMAKAIANEAGA 474
Query: 148 TFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSL--TMKRVSLDDAARR 205
+F +V S + SK+FGE K + ALF+LA ++SP++IF+DEVDS+ RV +A R+
Sbjct: 475 SFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRK 534
Query: 206 MIGTLLAEMDGFKERK-DKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKI 264
+ + DG D+++VL ATN P+DLDEA++ R RI V LP V S +I +
Sbjct: 535 IKNEFMTHWDGLMSNAGDRILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREKILR- 593
Query: 265 HLRGIHYDVPLSRLAKEAVKRL-----------YSGREIANVVKLATMKMLEEM------ 307
+ L+KE + L YSG ++ N A + + E+
Sbjct: 594 -----------TLLSKEKTENLDFQELAQMTDGYSGSDLKNFCTTAAYRPVRELIKQECL 642
Query: 308 -------------NPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARI 342
N E + + R +T RPL+++D K A +++
Sbjct: 643 KDQERRKREEAEKNSEEGSEAKEEVSEERGITLRPLSMEDMKVAKSQV 690
>gb|AAD20084.1| (AC006836) putative AAA-type ATPase [Arabidopsis thaliana]
Length = 603
Score = 152 bits (380), Expect = 6e-36
Identities = 96/285 (33%), Positives = 150/285 (51%), Gaps = 35/285 (12%)
Query: 90 ITWNDIGGLREAKKLIAQAI------GLSIAKSPIEPPQGILLFGPPGTGKSLLASAVAN 143
+TW+D+GGL++ KK + QA+ + K I P +GILL GPPG K+ LA A AN
Sbjct: 283 VTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTTLAKAAAN 342
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-----VS 198
+ A+FFS+ ++L S Y GE L+ F AR SPS+IF DE D + KR +
Sbjct: 343 AAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSN 402
Query: 199 LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVN 256
R++ TLL EMDG +E K ++VL ATN P+ +D A++ R + +YVP PD+
Sbjct: 403 SSTVGERLLSTLLTEMDGLEEAKG-ILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLE 461
Query: 257 SAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDP 314
+ EI ++H R + DV L ++A+E L++G E+ + + E L +
Sbjct: 462 ARFEILQVHTRNMTLGDDVDLRKIAEET--DLFTGAELEGLCR-------ESGTVSLREN 512
Query: 315 LRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAK 359
+ + + R F+ A + +K +T +V+ Y + K
Sbjct: 513 IAATAVFNR----------HFQTAKSSLKPALTIEEVETYSSFRK 547
Score = 75.3 bits (182), Expect = 1e-12
Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 16/233 (6%)
Query: 94 DIGGLREAKKLIAQAIGLSIAKSPIEP-------PQGILLFGPPGTGKSLLASAVANSLN 146
+IGG A + + + I + P+E P+G+LL+GPPGTGK+ L AV +
Sbjct: 23 EIGGNERALQALRELIIFPF-RYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECD 81
Query: 147 ATFFSVKASDLLSKYFGESSKLISALFSLARQLS----PSVIFIDEVDSLTMKRVSLDDA 202
A + + + GES K++ F+ A + PSVIFIDE+D L +R + +
Sbjct: 82 AHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRDARREQ 141
Query: 203 ARRMIGTLLAEMDGFKERKD--KVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSA 258
R+ L MD K +V+V+ +TN +D A+ R + V P+
Sbjct: 142 DVRIASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDR 201
Query: 259 VEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPEL 311
++I +++ + ++ D + A Y G ++ + + AT+ + + L
Sbjct: 202 LKILQLYTKKVNLDPSVDLQAIAISCNGYVGADLEALCREATISASKRSSDSL 254
>sp|O05209|VAT_THEAC VCP-LIKE ATPASE >gi|7484232|pir||T37458 VCP-like ATPase -
Thermoplasma acidophilum >gi|1916752|gb|AAC45089.1|
(U78072) VCP-like ATPase [Thermoplasma acidophilum]
>gi|10640117|emb|CAC11969.1| (AL445065) VAT ATPase
(VCP-like ATPase) [Thermoplasma acidophilum]
Length = 745
Score = 152 bits (379), Expect = 8e-36
Identities = 94/270 (34%), Positives = 151/270 (55%), Gaps = 20/270 (7%)
Query: 53 LLEEAKKWEEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLS 112
+LE+ E+ KN K E + + +++ + W+DIGGL + K+ I + + L
Sbjct: 431 ILEKMVVTEDDFKNALKSIEPSS----LREVMVEVPNVHWDDIGGLEDVKREIKETVELP 486
Query: 113 IAKSP------IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESS 166
+ K I P +G LL+GPPG GK+LLA AVA NA F S+K ++LSK+ GES
Sbjct: 487 LLKPDVFKRLGIRPSKGFLLYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESE 546
Query: 167 KLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDA--ARRMIGTLLAEMDGFKERKDKV 224
K I +F A+Q++P+++F+DE+DS+ +R + D+ R++ LL +DG E + V
Sbjct: 547 KAIREIFKKAKQVAPAIVFLDEIDSIAPRRGTTSDSGVTERIVNQLLTSLDGI-EVMNGV 605
Query: 225 IVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAK 280
+V+ ATN P +D A+L R IY+P PD + + I K+H + + DV L+ +A+
Sbjct: 606 VVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILKVHTKNMPLAPDVDLNDIAQ 665
Query: 281 EAVKRLYSGREIANVVKLATMKMLEEMNPE 310
Y G ++ N+ + A M E NP+
Sbjct: 666 RT--EGYVGADLENLCREAGMNAYRE-NPD 692
Score = 148 bits (370), Expect = 9e-35
Identities = 102/275 (37%), Positives = 149/275 (54%), Gaps = 28/275 (10%)
Query: 88 STITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASA 140
S I++ DIGGL E I + I L + K P I PP+G++L+GPPGTGK+L+A A
Sbjct: 185 SRISYEDIGGLSEQLGKIREMIELPL-KHPELFERLGITPPKGVILYGPPGTGKTLIARA 243
Query: 141 VANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD 200
VAN A F S+ +++SKY+G+S + + +FS A + +PS+IFIDE+DS+ KR +
Sbjct: 244 VANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSIIFIDEIDSIAPKREEVQ 303
Query: 201 -DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNS 257
+ RR++ LL MDG KER VIV+ ATN +D A+ R I + +PD N
Sbjct: 304 GEVERRVVAQLLTLMDGMKER-GHVIVIGATNRIDAIDPALRRPGRFDREIEIGVPDRNG 362
Query: 258 AVEIFKIHLRGIHYDVPLSRLAKEAVKRL---------YSGREIANVVKLATMKMLEEMN 308
EI IH R ++PL +E K L + G ++A +V+ + M L
Sbjct: 363 RKEILMIHTR----NMPLGMSEEEKNKFLEEMADYTYGFVGADLAALVRESAMNALRRYL 418
Query: 309 PELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIK 343
PE+ + T L +T DDFK A+ I+
Sbjct: 419 PEIDLDKPIPT---EILEKMVVTEDDFKNALKSIE 450
>gi|11230794 fidgetin-like 1 [Mus musculus]
>gi|10442029|gb|AAG17290.1|AF263914_1 (AF263914)
fidgetin-like 1 [Mus musculus]
Length = 683
Score = 152 bits (379), Expect = 8e-36
Identities = 97/285 (34%), Positives = 156/285 (54%), Gaps = 25/285 (8%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVANS 144
+ W+DI G+ AK I + + + + I PP+GILLFGPPGTGK+L+ +A+
Sbjct: 407 VHWDDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 466
Query: 145 LNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DAA 203
ATFFS+ AS L SK+ GE K++ ALF++AR P+VIFIDE+DSL +R + +++
Sbjct: 467 SGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESS 526
Query: 204 RRMIGTLLAEMDG-FKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIF 262
RR+ L ++DG +D+++V+ ATN P ++DEA RL R+Y+PLP+ ++ +I
Sbjct: 527 RRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIV 586
Query: 263 KIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKG 322
+ LS + V + G A++ +L L P+R +L
Sbjct: 587 GNLMS--KEQCCLSDEETDLVVQQSDGFSGADMTQLCREASL--------GPIR--SLHA 634
Query: 323 RDLTT------RPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
D+ T RP+ DF+ A ++ ++ D++ YE W + F
Sbjct: 635 ADIATISPDQVRPIAYIDFENAFKTVRPTVSPKDLELYENWNETF 679
>pir||T11652 probable transitional endoplasmic reticulum ATPase - fission yeast
(Schizosaccharomyces pombe) (fragment)
>gi|2330848|emb|CAB11085.1| (Z98533) transitional
endoplasmic reticulum atpase [Schizosaccharomyces pombe]
Length = 432
Score = 151 bits (378), Expect = 1e-35
Identities = 99/299 (33%), Positives = 157/299 (52%), Gaps = 23/299 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKS 135
+ +++ + W DIGGL E K+ + + + + + + + P +G+L FGPPGTGK+
Sbjct: 103 ETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKT 162
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN +A F SVK +LLS +FGES + +F AR +P V+F+DE+DS+
Sbjct: 163 LLAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKA 222
Query: 196 R-VSLDDA--ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYV 250
R S D+ R++ LL EMDG +K+ V V+ ATN P +D A++ RL IYV
Sbjct: 223 RGASAGDSGGGDRVVNQLLTEMDGVNSKKN-VFVIGATNRPDQIDPALMRPGRLDQLIYV 281
Query: 251 PLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGRE----IANVVKLATMKML 304
PLPD + I + LR + DV L +AK +SG + + VKLA +
Sbjct: 282 PLPDEEARFSILQTQLRHTPVAEDVDLRAVAK--ATHGFSGADLEFVVQRAVKLAIKDSI 339
Query: 305 EE---MNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKE 360
EE E + + D + + + AM + ++ ++V++YE +A +
Sbjct: 340 EEDIKRENETGEAPADDVVMDEDASVSQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQ 398
>gi|10946660 spermatogenesis associated factor [Mus musculus]
>gi|4105619|gb|AAD02481.1| (AF049099) SPAF [Mus
musculus]
Length = 892
Score = 150 bits (376), Expect = 2e-35
Identities = 91/230 (39%), Positives = 135/230 (58%), Gaps = 16/230 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGL------SIAKSPIEPPQGILLFGPPGTGKSLLASAVAN 143
++W+DIGGL K + QA+ S + I+PP+G+LL+GPPG K+++A A+AN
Sbjct: 623 VSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKALAN 682
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDA- 202
F ++K +L++KY GES + + +F AR ++PS+IF DE+D+L ++R S A
Sbjct: 683 ESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSGAG 742
Query: 203 --ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSA 258
A R++ LL EMDG ++ K+ V VL ATN P +D+A++ R+ IYVPLPD +
Sbjct: 743 NVADRVLAQLLTEMDGIEQLKN-VTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAATR 801
Query: 259 VEIFKI--HLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
EI + H I +V L L + YSG EI V K A + LEE
Sbjct: 802 REILNLQFHSMPISNEVDLDELVLQT--DTYSGAEIIAVCKEAALLALEE 849
Score = 115 bits (286), Expect = 6e-25
Identities = 87/272 (31%), Positives = 140/272 (50%), Gaps = 29/272 (10%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVA 142
+T++ IGGL K I + I L + K P I P+G+LL+GPPGTGK+++A AVA
Sbjct: 349 VTYDMIGGLNSQLKAIREIIELPL-KQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVA 407
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRV-SLDD 201
N + A + +++SK++GE+ + +F+ A PS+IFIDE+D+L KR + +
Sbjct: 408 NEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSE 467
Query: 202 AARRMIGTLLAEMDGF--KERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNS 257
+R++ +LL MDG + + +V+VL ATN P LD A+ R I + +P+
Sbjct: 468 VEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQD 527
Query: 258 AVEIFKIHLRGIHY---DVPLSRLAKEAVKRLYSG---REIANVVKLATMKMLEEMNPEL 311
++I + LR + + L RLA A Y G + + N L ++ + P L
Sbjct: 528 RLDILQKLLRRVPHLLTKAELLRLANNA--HGYVGADLKALCNEAGLHALRRVLRKQPNL 585
Query: 312 SDPLRVSTLKGRDLTTRPLTLDDFKYAMARIK 343
D +K +TL+DF M I+
Sbjct: 586 PDSKVAGMVK--------ITLNDFLQGMNDIR 609
>gb|AAK40609.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 393
Score = 150 bits (375), Expect = 2e-35
Identities = 92/249 (36%), Positives = 145/249 (57%), Gaps = 16/249 (6%)
Query: 74 KNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILL 126
K + K +I+R +T+++IGGL E + + + + L + K+P +EPP+G+LL
Sbjct: 115 KEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPL-KNPEIFREIGVEPPKGVLL 173
Query: 127 FGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFI 186
+GPPGTGK++LA AVA NA F V AS+ K+ GE ++++ LF +A++ +PS+IFI
Sbjct: 174 YGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFI 233
Query: 187 DEVDSLTMKRVSLDDAARRMIG----TLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
DE+D++ KR+ + + R I LLAE+DGF + D V ++ ATN LD A+L
Sbjct: 234 DEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGF-DPLDNVKIIAATNRIDILDPALLR 292
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANV-VKLA 299
R I VPLPD EIF I+L+ + + ++ + +SG +I NV V+ A
Sbjct: 293 PGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAA 352
Query: 300 TMKMLEEMN 308
M + + N
Sbjct: 353 YMAIRDGRN 361
>sp|P34808|MEI1_CAEEL MEIOTIC SPINDLE FORMATION PROTEIN MEI-1 >gi|7506899|pir||T24316
hypothetical protein T01G9.5 - Caenorhabditis elegans
>gi|409131|gb|AAA28109.1| (L25423) mei-1 [Caenorhabditis
elegans] >gi|3879272|emb|CAB00052.1| (Z75713) contains
similarity to Pfam domain: PF00004 (ATPases associated
with various cellular activities (AAA)), Score=287.9,
E-value=4.2e-83, N=1~cDNA EST EMBL:M88967 comes from
this gene~cDNA EST yk257a12.3 comes from this gene~cDNA
EST yk257a12.5 c>
Length = 472
Score = 150 bits (374), Expect = 3e-35
Identities = 90/290 (31%), Positives = 162/290 (55%), Gaps = 24/290 (8%)
Query: 88 STITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVA 142
+T++ +DI G+ + K+++ +A+ L + P + ++L GPPGTGK+L+A A+A
Sbjct: 188 NTMSLDDIIGMHDVKQVLHEAVTLPLLVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIA 247
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL--D 200
+ ++TFF+V ++DL SK+ G+S K++ LF LAR +PS+IFIDE+D+L +R +
Sbjct: 248 SESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNSGEH 307
Query: 201 DAARRMIGTLLAEMDGFKERKD--KVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSA 258
+A+RR+ L +MDG + + D +V VL ATN PW+LDEA+ R RI++PLPD+++
Sbjct: 308 EASRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDAR 367
Query: 259 VEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
++ + + G ++ A +SG ++ ++ + A + +L +
Sbjct: 368 KKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVLRRYD--------TK 419
Query: 319 TLKGRDLTTRPLTLD-------DFKYAMARIKSPITKSDVKKYERWAKEF 361
+L+G +LT +L DF+ A+ + + K + W F
Sbjct: 420 SLRGGELTAAMESLKAELVRNIDFEAALQAVSPSAGPDTMLKCKEWCDSF 469
>sp|P54609|CC48_ARATH CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|2118115|pir||S60112
transitional endoplasmic reticulum ATPase - Arabidopsis
thaliana >gi|1019904|gb|AAC49120.1| (U37587) cell
division cycle protein [Arabidopsis thaliana]
>gi|6681343|gb|AAF23260.1|AC015985_18 (AC015985)
putative transitional endoplasmic reticulum ATPase
[Arabidopsis thaliana]
Length = 809
Score = 150 bits (374), Expect = 3e-35
Identities = 100/306 (32%), Positives = 158/306 (50%), Gaps = 38/306 (12%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ ++WNDIGGL K+ + + + + K + P +G+L +GPPG GK+
Sbjct: 469 ETVVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT 528
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F SVK +LL+ +FGES + +F ARQ +P V+F DE+DS+ +
Sbjct: 529 LLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 588
Query: 196 RVSLD-----DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRI 248
R AA R++ LL EMDG +K V ++ ATN P +D A+L RL I
Sbjct: 589 RGGGSGGDGGGAADRVLNQLLTEMDGMNAKK-TVFIIGATNRPDIIDSALLRPGRLDQLI 647
Query: 249 YVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
Y+PLPD +S + IFK LR I DV + LAK + +SG +I + + A + E
Sbjct: 648 YIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAK--YTQGFSGADITEICQRACKYAIRE 705
Query: 307 -------------MNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKK 353
NPE + V + + F+ +M + ++ +D++K
Sbjct: 706 NIEKDIEKEKRRSENPEAMEEDGVDEVS-------EIKAAHFEESMKYARRSVSDADIRK 758
Query: 354 YERWAK 359
Y+ +A+
Sbjct: 759 YQAFAQ 764
Score = 133 bits (331), Expect = 3e-30
Identities = 80/228 (35%), Positives = 129/228 (56%), Gaps = 14/228 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++D+GG+R+ I + + L + ++PP+GILL+GPPG+GK+L+A AVAN
Sbjct: 204 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 263
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DA 202
A FF + +++SK GES + F A + +PS+IFIDE+DS+ KR + +
Sbjct: 264 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 323
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K R VIV+ ATN P +D A+ R I + +PD +E
Sbjct: 324 ERRIVSQLLTLMDGLKSRA-HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLE 382
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
+ +IH + + DV L R++K+ Y G ++A + A ++ + E
Sbjct: 383 VLRIHTKNMKLAEDVDLERISKDT--HGYVGADLAALCTEAALQCIRE 428
>pir||T48355 transitional endoplasmic reticulum ATPase - Arabidopsis thaliana
>gi|7378614|emb|CAB83290.1| (AL162751) transitional
endoplasmic reticulum ATPase [Arabidopsis thaliana]
Length = 843
Score = 150 bits (374), Expect = 3e-35
Identities = 99/305 (32%), Positives = 159/305 (51%), Gaps = 36/305 (11%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ ++W DIGGL K+ + + + + K + P +G+L +GPPG GK+
Sbjct: 502 ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT 561
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F SVK +LL+ +FGES + +F ARQ +P V+F DE+DS+ +
Sbjct: 562 LLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 621
Query: 196 RVS----LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R + AA R++ LL EMDG +K V ++ ATN P +D A+L RL IY
Sbjct: 622 RGNSAGDAGGAADRVLNQLLTEMDGMNAKK-TVFIIGATNRPDIIDSALLRPGRLDQLIY 680
Query: 250 VPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE- 306
+PLPD +S + IFK LR + DV ++ LAK + +SG +I + + A + E
Sbjct: 681 IPLPDEDSRLNIFKACLRKSPVAKDVDVTALAK--YTQGFSGADITEICQRACKYAIREN 738
Query: 307 ------------MNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKY 354
NPE + V D + F+ +M + ++ +D++KY
Sbjct: 739 IEKDIENERRRSQNPEAMEEDMV------DDEVSEIRAAHFEESMKYARRSVSDADIRKY 792
Query: 355 ERWAK 359
+ +A+
Sbjct: 793 QAFAQ 797
Score = 133 bits (331), Expect = 3e-30
Identities = 80/228 (35%), Positives = 129/228 (56%), Gaps = 14/228 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++D+GG+R+ I + + L + ++PP+GILL+GPPG+GK+L+A AVAN
Sbjct: 237 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 296
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DA 202
A FF + +++SK GES + F A + +PS+IFIDE+DS+ KR + +
Sbjct: 297 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEV 356
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K R VIV+ ATN P +D A+ R I + +PD +E
Sbjct: 357 ERRIVSQLLTLMDGLKSRA-HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLE 415
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
+ +IH + + DV L R++K+ Y G ++A + A ++ + E
Sbjct: 416 VLRIHTKNMKLAEDVDLERISKDT--HGYVGADLAALCTEAALQCIRE 461
>sp|O26824|PRS1_METTH PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MTH728
>gi|7435737|pir||C69197 ATP-dependent 26S proteinase
regulatory subunit 4 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621817|gb|AAB85233.1| (AE000852) ATP-dependent 26S
protease regulatory subunit 4 [Methanobacterium
thermoautotrophicum]
Length = 410
Score = 149 bits (373), Expect = 4e-35
Identities = 84/196 (42%), Positives = 123/196 (61%), Gaps = 13/196 (6%)
Query: 86 KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLAS 139
++ +++ IGGL E + + + + L + K IEPP+G+LL+GPPGTGK+LLA
Sbjct: 144 EKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAK 203
Query: 140 AVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRV-- 197
AVA+ NATF + AS+ + KY GE ++L+ +F LA++ SPS+IFIDE+D++ KR+
Sbjct: 204 AVAHETNATFIKIVASEFVRKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKRLKS 263
Query: 198 --SLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLP 253
S D +R + LLAE+DGF E + V ++ ATN P LD A+L R I VPLP
Sbjct: 264 STSGDREVQRTLMQLLAELDGF-ESRGNVGIVAATNRPDILDPALLRPGRFDRFIEVPLP 322
Query: 254 DVNSAVEIFKIHLRGI 269
+ + EI KIH G+
Sbjct: 323 NEDGRREILKIHTSGM 338
>sp|P54774|CC48_SOYBN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG (VALOSIN CONTAINING PROTEIN
HOMOLOG) (VCP) >gi|7435757|pir||T06409
valosin-containing protein - soybean
>gi|862480|gb|AAA80587.1| (U20213) valosin-containing
protein [Glycine max]
Length = 807
Score = 148 bits (371), Expect = 7e-35
Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 36/305 (11%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ ++W DIGGL K+ + + + + K + P +G+L +GPPG GK+
Sbjct: 470 ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT 529
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F SVK +LL+ +FGES + +F ARQ +P V+F DE+DS+ +
Sbjct: 530 LLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
Query: 196 RVS----LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R S AA R++ LL EMDG +K V ++ ATN P +D A+L RL IY
Sbjct: 590 RGSSVGDAGGAADRVLNQLLTEMDGMSAKK-TVFIIGATNRPDIIDPALLRPGRLDQLIY 648
Query: 250 VPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE- 306
+PLPD +S +IFK LR I +V L LA+ + +SG +I + + A + E
Sbjct: 649 IPLPDEDSRHQIFKACLRKSPIAKNVDLRALARHT--QGFSGADITEICQRACKYAIREN 706
Query: 307 ------------MNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKY 354
NPE D V D + F+ +M + ++ +D++KY
Sbjct: 707 IEKDIERERKSRENPEAMDEDTV------DDEVAEIKAAHFEESMKFARRSVSDADIRKY 760
Query: 355 ERWAK 359
+ +A+
Sbjct: 761 QAFAQ 765
Score = 135 bits (337), Expect = 7e-31
Identities = 87/261 (33%), Positives = 141/261 (53%), Gaps = 16/261 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++D+GG+R+ I + + L + ++PP+GILL+GPPG+GK+L+A AVAN
Sbjct: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
A FF + +++SK GES + F A + +PS+IFIDE+DS+ KR +
Sbjct: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 324
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K R VIV+ ATN P +D A+ R I + +PD +E
Sbjct: 325 ERRIVSQLLTLMDGLKSRA-HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
+ +IH + + DV L R+AK+ Y G ++A + A ++ + E + L
Sbjct: 384 VLRIHTKNMKLSDDVDLERIAKDT--HGYVGADLAALCTEAALQCIREKMDVID--LEDE 439
Query: 319 TLKGRDLTTRPLTLDDFKYAM 339
T+ L + +T + F+ A+
Sbjct: 440 TIDAEVLNSMAVTNEHFQTAL 460
>sp|P54811|TER1_CAEEL TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 1 (P97/CDC48
HOMOLOG 1) >gi|7495467|pir||T18970 hypothetical protein
C06A1.1 - Caenorhabditis elegans
>gi|3874005|emb|CAA90050.1| (Z49886) contains similarity
to Pfam domain: PF00004 (ATPases associated with various
cellular activities (AAA)), Score=658.1,
E-value=1.5e-194, N=2~cDNA EST yk76f10.5 comes from this
gene; cDNA EST yk3h5.5 comes from this gene~cDNA EST
yk6d7.5 comes f>
Length = 809
Score = 148 bits (371), Expect = 7e-35
Identities = 104/313 (33%), Positives = 165/313 (52%), Gaps = 28/313 (8%)
Query: 72 EGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGIL 125
+GK+ +A+++ TW+DIGGL+ K+ + + + + K ++P +G+L
Sbjct: 462 QGKSSPSALREAVVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVL 521
Query: 126 LFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIF 185
+GPPG GK+LLA A+AN A F S+K +LL+ +FGES + +F AR +P V+F
Sbjct: 522 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLF 581
Query: 186 IDEVDSLTMKR-----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM 240
DE+DS+ R A+ R+I +L EMDG +K+ V ++ ATN P +D A+
Sbjct: 582 FDELDSIAKARGGGAGGDGGGASDRVINQVLTEMDGMNAKKN-VFIIGATNRPDIIDPAV 640
Query: 241 L--SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANV- 295
L RL IY+PLPD S +I K LR + D+ L+ LAK V +SG ++ +
Sbjct: 641 LRPGRLDQLIYIPLPDEASRHQILKASLRKTPLSKDLDLTFLAKNTVG--FSGADLTEIC 698
Query: 296 ---VKLATMKMLEE---MNPELSDPLRVSTLKGRDLTTRP---LTLDDFKYAMARIKSPI 346
KLA + +E+ + E D D P +T F+ AM + +
Sbjct: 699 QRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDAVDPVPEITRAHFEEAMKFARRSV 758
Query: 347 TKSDVKKYERWAK 359
T +D++KYE +A+
Sbjct: 759 TDNDIRKYEMFAQ 771
Score = 134 bits (334), Expect = 1e-30
Identities = 85/263 (32%), Positives = 145/263 (54%), Gaps = 16/263 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
I ++D+GG+R+ I + + L + I+PP+GILLFGPPGTGK+L+A AVAN
Sbjct: 207 IGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGIKPPRGILLFGPPGTGKTLIARAVAN 266
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DA 202
+ FF + +++SK GES + F + P+++FIDE+D++ KR + +
Sbjct: 267 ETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKNQPAILFIDEIDAIAPKREKTNGEV 326
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K R + ++V+ ATN P +D A+ R I + +PD +E
Sbjct: 327 ERRIVSQLLTLMDGVKGRSN-LVVIAATNRPNSIDGALRRFGRFDREIDIGIPDAVGRLE 385
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH + + DV L ++A E + G ++A++ A ++ + E EL D L
Sbjct: 386 ILRIHTKNMKLADDVDLEQIANEC--HGFVGADLASLCSEAALQQIRE-KMELID-LEDD 441
Query: 319 TLKGRDLTTRPLTLDDFKYAMAR 341
+ L + +T+++F++A +
Sbjct: 442 QIDAEVLNSLAVTMENFRFAQGK 464
>pir||A69086 cell division control protein Cdc48 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622767|gb|AAB86112.1| (AE000923) cell division
control protein Cdc48 [Methanobacterium
thermoautotrophicum]
Length = 732
Score = 148 bits (371), Expect = 7e-35
Identities = 104/277 (37%), Positives = 152/277 (54%), Gaps = 26/277 (9%)
Query: 53 LLEEAKKWEEKAKNVRKRRE-GKNEYFDKLK---------ALIKRSTITWNDIGGLREAK 102
+L E K EE K V K+ + ++ D LK L++ ++W+DIGGL AK
Sbjct: 427 VLPEIKADEEIPKEVLKKMVVTRADFKDALKEIQPSALREVLVQVPNVSWDDIGGLEGAK 486
Query: 103 KLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASD 156
+ + +A+ + K I PP+GILL G PGTGK+LLA AVAN A F +VK +
Sbjct: 487 QELREAVEWPLKYPDRFKKFGIRPPKGILLHGSPGTGKTLLAKAVANESQANFIAVKGPE 546
Query: 157 LLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR---VSLDDAARRMIGTLLAE 213
LLSK+ GES K + +F ARQ +P+VIF DE+DS+ R + +R++ LL E
Sbjct: 547 LLSKWVGESEKGVREVFRKARQTAPTVIFFDEIDSIASVRSGSTADSGVTQRVVNQLLTE 606
Query: 214 MDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY 271
+DG +E +D V V+ ATN P LD A+L R + V PD + + IF++H + +
Sbjct: 607 IDGLEELQD-VAVIAATNRPDILDPALLRPGRFDRHVKVEDPDKEARLAIFRVHTKDMPL 665
Query: 272 --DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
DV L +LA++ Y G +I V + A M L +
Sbjct: 666 ADDVDLEKLAEKT--EGYVGADIEAVCREAAMLTLRD 700
Score = 147 bits (368), Expect = 2e-34
Identities = 95/275 (34%), Positives = 151/275 (54%), Gaps = 17/275 (6%)
Query: 80 KLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTG 133
KL+ + +T+ DIGGL+E K + + I + + + I PP+G+L+ GPPGTG
Sbjct: 192 KLEGVKNLVDVTYEDIGGLKEEVKKVREMIEIPLKRPELFERLGITPPKGVLMHGPPGTG 251
Query: 134 KSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLT 193
K+LLA AVAN +A F ++ +++SKY G S + + F A + +PS+IFIDE+D++
Sbjct: 252 KTLLAKAVANESDAHFIAINGPEIMSKYVGGSEERLREFFEEAEENAPSIIFIDEIDAIA 311
Query: 194 MKRVSLD-DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYV 250
KR + + RR++ LL MDG K R +V+V+ ATN P LD A+ R I +
Sbjct: 312 PKREDVSGEVERRIVAQLLTLMDGLKSR-GQVVVIGATNRPDALDPALRRPGRFDREIEI 370
Query: 251 PLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMN 308
+PD EI +IH RG+ DV L LA+ + + G ++ ++ K + M++L +
Sbjct: 371 GVPDREERKEILQIHTRGMPLADDVDLDELAE--ITHGFVGADLESLCKESAMRVLRRVL 428
Query: 309 PELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIK 343
PE+ + L +T DFK A+ I+
Sbjct: 429 PEIKAD---EEIPKEVLKKMVVTRADFKDALKEIQ 460
>gb|AAC27447.1| (AF047037) transitional endoplasmic reticulum ATPase TER94
[Drosophila melanogaster]
Length = 801
Score = 148 bits (371), Expect = 7e-35
Identities = 116/372 (31%), Positives = 181/372 (48%), Gaps = 32/372 (8%)
Query: 15 EFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRREGK 74
+ E+ + H +A C+E + E + L I LE+ K E ++ E
Sbjct: 392 DLEQIAAESHGHVGADLASLCSEAALQQIREKMDL--IDLEDDKIDAEVLASLAVTMENF 449
Query: 75 NEYFDKLKALIKRSTI------TWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQ 122
K R T+ TW DIGGL KK + + + + K ++P +
Sbjct: 450 RYAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSR 509
Query: 123 GILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPS 182
G+L +GPPG GK+LLA A+AN A F SVK +LL+ +FGES + +F AR +P
Sbjct: 510 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPC 569
Query: 183 VIFIDEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDE 238
V+F DE+DS+ R AA R+I +L EMDG +K+ V ++ ATN P +D
Sbjct: 570 VLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKN-VFIIGATNRPDIIDP 628
Query: 239 AML--SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIAN 294
A+L RL IY+PLPD S I K +LR + +V L+ +AK V + +SG ++
Sbjct: 629 AILRPGRLDQLIYIPLPDDKSREAILKANLRKSALAKEVDLTYIAK--VTQGFSGADLTE 686
Query: 295 V----VKLATMKMLE---EMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPIT 347
+ KLA + +E E ++ + D +T F+ AM + ++
Sbjct: 687 ICQRACKLAIRQAIEAEIRREKERAENQNSAMDMDEDDPVPEITSAHFQEAMKFARRSVS 746
Query: 348 KSDVKKYERWAK 359
+D++KYE +A+
Sbjct: 747 DNDIRKYEMFAQ 758
Score = 142 bits (354), Expect = 7e-33
Identities = 87/265 (32%), Positives = 149/265 (55%), Gaps = 16/265 (6%)
Query: 88 STITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAV 141
+ + ++DIGG R+ I + + L + ++PP+GIL++GPPGTGK+L+A AV
Sbjct: 196 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 255
Query: 142 ANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLD 200
AN A FF + +++SK GES + F A + SP++IFIDE+D++ KR +
Sbjct: 256 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHG 315
Query: 201 DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSA 258
+ RR++ LL MDG K + +IV+ ATN P +D A+ R I + +PD
Sbjct: 316 EVERRIVSQLLTLMDGMK-KSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGR 374
Query: 259 VEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLR 316
+E+ +IH + +H DV L ++A E+ + G ++A++ A ++ + E +L D L
Sbjct: 375 LEVLRIHTKNMKLHDDVDLEQIAAES--HGHVGADLASLCSEAALQQIRE-KMDLID-LE 430
Query: 317 VSTLKGRDLTTRPLTLDDFKYAMAR 341
+ L + +T+++F+YAM +
Sbjct: 431 DDKIDAEVLASLAVTMENFRYAMTK 455
>gi|6322994 Yll034cp [Saccharomyces cerevisiae]
>gi|2492526|sp|Q07844|YL34_YEAST HYPOTHETICAL 93.1 KD
PROTEIN YLL034C >gi|2131732|pir||S64785 hypothetical
protein YLL034c - yeast (Saccharomyces cerevisiae)
>gi|1360222|emb|CAA97483.1| (Z73139) ORF YLL034c
[Saccharomyces cerevisiae]
Length = 837
Score = 148 bits (370), Expect = 9e-35
Identities = 99/300 (33%), Positives = 160/300 (53%), Gaps = 30/300 (10%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVAN 143
+TW ++G L+ + + AI I K I P G+LL+GPPG GK+LLA AVAN
Sbjct: 530 VTWANVGALQRVRLELNMAIVQPIKRPELYEKVGISAPGGVLLWGPPGCGKTLLAKAVAN 589
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDA 202
A F S+K +LL+KY GES + I +F+ AR P VIF DE+D+L +R SL ++
Sbjct: 590 ESRANFISIKGPELLNKYVGESERSIRQVFTRARASVPCVIFFDELDALVPRRDTSLSES 649
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVE 260
+ R++ TLL E+DG +R+ + V+ ATN P +D AML RL +++ LP+ ++
Sbjct: 650 SSRVVNTLLTELDGLNDRRG-IFVIGATNRPDMIDPAMLRPGRLDKSLFIELPNTEEKLD 708
Query: 261 IFKI----HLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKML-------EEMNP 309
I K H + DV + + +SG ++A +V+ +++ L EE+
Sbjct: 709 IIKTLTKSHGTPLSSDVDFEEIIRNEKCNNFSGADLAALVRESSVLALKRKFFQSEEIQS 768
Query: 310 ELSDPLRVS------TLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFAI 363
L + L + G ++ +T+ DF+ A+ +IK ++ D KY+R K+ +
Sbjct: 769 VLDNDLDKEFEDLSVGVSGEEII---VTMSDFRSALRKIKPSVSDKDRLKYDRLNKKMGL 825
Score = 110 bits (272), Expect = 3e-23
Identities = 82/254 (32%), Positives = 131/254 (51%), Gaps = 17/254 (6%)
Query: 44 SENLSLSHILLE-EAKKWEEKAKNVRKRREGKNEYF-DKLKALIKRSTITWNDIGGLREA 101
S++ S+S + E + K EE K+ ++ +EG + K+K + +GG+ +
Sbjct: 154 SKSGSVSESITETDDPKTEEVKKSKKRSKEGTCKVKRQKIKEDRSPPNSSLKSLGGMDDV 213
Query: 102 KKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKAS 155
+ + IGL I + +EPP+G+LL GPPG GK+ +A+A+A L F S+ A
Sbjct: 214 VAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAP 273
Query: 156 DLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR--VSLDDAARRMIGTLLAE 213
++S GES K I LF AR L+P ++F DE+D++T KR + + RR++ LL
Sbjct: 274 SVVSGMSGESEKKIRDLFDEARSLAPCLVFFDEIDAITPKRDGGAQREMERRIVAQLLTS 333
Query: 214 MDGFKERKDK---VIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVEIFKIHLRG 268
MD K VI++ ATN P LD A+ R I + +P+ S + I K
Sbjct: 334 MDELTMEKTNGKPVIIIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSDN 393
Query: 269 IHYD--VPLSRLAK 280
+ D + ++LAK
Sbjct: 394 LKIDGAIDFAKLAK 407
>sp|Q96372|CC48_CAPAN CELL DIVISION CYCLE PROTEIN 48 HOMOLOG >gi|1669660|emb|CAA70565.1|
(Y09396) protein of AAA family [Capsicum annuum]
Length = 805
Score = 148 bits (370), Expect = 9e-35
Identities = 101/311 (32%), Positives = 161/311 (51%), Gaps = 50/311 (16%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEPPQ-----------GILLFGPP 130
+ +++ ++W DIGGL K+ + + + + P+EPP+ G+L +GPP
Sbjct: 470 ETVVEVPNVSWEDIGGLENVKRELQETV-----QYPVEPPEKFEKFGMSPSKGVLFYGPP 524
Query: 131 GTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVD 190
G GK+LLA A+AN A F SVK +LL+ +FGES + +F ARQ +P V+F DE+D
Sbjct: 525 GCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELD 584
Query: 191 SLTMKRVS----LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRL 244
S+ +R S AA R++ LL EMDG +K V ++ ATN P +D A+L RL
Sbjct: 585 SIATQRGSSSGDAGGAADRVLNQLLTEMDGMNAKK-TVFIIGATNRPDIIDPALLRPGRL 643
Query: 245 PIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMK 302
IY+PLPD +S +IFK LR + D+ L LAK + +SG ++ + + A
Sbjct: 644 DQLIYIPLPDEDSRHQIFKACLRKSPLSKDIDLRALAKHT--QGFSGADVTEICQRACKY 701
Query: 303 MLEE-------------MNPELSDPLRVSTLKGRDLTTRP-LTLDDFKYAMARIKSPITK 348
+ E NP+ D D+ P + F+ +M + ++
Sbjct: 702 AIRENIEKDIEREKRRQENPDSMD---------EDVDEVPEIKPAHFEESMKYARRSVSD 752
Query: 349 SDVKKYERWAK 359
+D++KY+ +A+
Sbjct: 753 ADIRKYQAFAQ 763
Score = 132 bits (328), Expect = 8e-30
Identities = 86/261 (32%), Positives = 140/261 (52%), Gaps = 16/261 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++D+GG+R+ I + + L + ++PP+GILL+GPPG+GK+L+A AVAN
Sbjct: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
A FF + +++SK GES + F A + +PS+IFIDE+DS+ KR +
Sbjct: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 324
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K R VIV+ ATN P +D A+ R I + +PD +E
Sbjct: 325 ERRIVSQLLTLMDGLKSRA-HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLE 383
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
+ IH + + +V L R++K+ Y G ++A + A ++ + E L L
Sbjct: 384 VLGIHTKNMKLAEEVDLERISKDT--HGYVGADLAALCTEAALQCIREKMDVLD--LEDD 439
Query: 319 TLKGRDLTTRPLTLDDFKYAM 339
T+ L + +T + F+ A+
Sbjct: 440 TIDAEVLNSMAVTNEHFQTAL 460
>dbj|BAB14567.1| (AK023411) unnamed protein product [Homo sapiens]
Length = 254
Score = 148 bits (370), Expect = 9e-35
Identities = 89/252 (35%), Positives = 147/252 (58%), Gaps = 24/252 (9%)
Query: 120 PPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQL 179
PP+GILLFGPPGTGK+L+ +A+ ATFFS+ AS L SK+ GE K++ ALF++AR
Sbjct: 13 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQ 72
Query: 180 SPSVIFIDEVDSLTMKRVSLD-DAARRMIGTLLAEMDG-FKERKDKVIVLTATNAPWDLD 237
P+VIFIDE+DSL +R + +++RR+ L ++DG +D+++V+ ATN P ++D
Sbjct: 73 QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 132
Query: 238 EAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKR--LYSGREIANV 295
EA RL R+Y+PLP+ ++ +I I+L ++ V++ +SG ++ +
Sbjct: 133 EAARRRLVKRLYIPLPEASARKQIV-INLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQL 191
Query: 296 VKLATMKMLEEMNPELSDPLRVSTLKGRDLTT------RPLTLDDFKYAMARIKSPITKS 349
+ A++ P+R +L+ D+ T RP+ DF+ A ++ ++
Sbjct: 192 CREASL-----------GPIR--SLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPK 238
Query: 350 DVKKYERWAKEF 361
D++ YE W K F
Sbjct: 239 DLELYENWNKTF 250
>pir||S47861 mei-1 protein - Caenorhabditis elegans
Length = 475
Score = 148 bits (369), Expect = 1e-34
Identities = 92/292 (31%), Positives = 162/292 (54%), Gaps = 25/292 (8%)
Query: 88 STITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVA 142
+T++ +DI G+ + K+++ +A+ L + P + ++L GPPGTGK+L+A A+A
Sbjct: 188 NTMSLDDIIGMHDVKQVLHEAVTLPLLVPEFFQGLRSPWKAMVLAGPPGTGKTLIARAIA 247
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL--D 200
+ ++TFF+V ++DL SK+ G+S K++ LF LAR +PS+IFIDE+D+L +R +
Sbjct: 248 SESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNSGEH 307
Query: 201 DAARRMIGTLLAEMDGFKERKD--KVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSA 258
+A+RR+ L +MDG + + D +V VL ATN PW+LDEA+ R RI++PLPD+++
Sbjct: 308 EASRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDAR 367
Query: 259 VEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
++ + + G ++ A +SG ++ ++ + A + +L R
Sbjct: 368 KKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVLRRY-------FRYD 420
Query: 319 T--LKGRDLTTRPLTLD-------DFKYAMARIKSPITKSDVKKYERWAKEF 361
T L+G +LT +L DF+ A+ + + K + W F
Sbjct: 421 TKSLRGGELTAAMESLKAELVRNIDFEAALQAVSPSAGPDTMLKCKEWCDSF 472
>gb|AAD27852.1|AF132553_1 (AF132553) BcDNA.GM02885 [Drosophila melanogaster]
>gi|7303816|gb|AAF58863.1| (AE003831) TER94 gene product
[alt 2] [Drosophila melanogaster]
Length = 801
Score = 148 bits (369), Expect = 1e-34
Identities = 116/372 (31%), Positives = 181/372 (48%), Gaps = 32/372 (8%)
Query: 15 EFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRREGK 74
+ E+ + H +A C+E + E + L I LE+ K E ++ E
Sbjct: 392 DLEQIAAESHGHVGADLASLCSEAALQQIREKMDL--IDLEDDKIDAEVLASLAVTMENF 449
Query: 75 NEYFDKLKALIKRSTI------TWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQ 122
K R T+ TW DIGGL KK + + + + K ++P +
Sbjct: 450 RYAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSR 509
Query: 123 GILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPS 182
G+L +GPPG GK+LLA A+AN A F SVK +LL+ +FGES + +F AR +P
Sbjct: 510 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSAAPC 569
Query: 183 VIFIDEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDE 238
V+F DE+DS+ R AA R+I +L EMDG +K+ V ++ ATN P +D
Sbjct: 570 VLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKN-VFIIGATNRPDIIDP 628
Query: 239 AML--SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIAN 294
A+L RL IY+PLPD S I K +LR + +V L+ +AK V + +SG ++
Sbjct: 629 AILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAK--VTQGFSGADLTE 686
Query: 295 V----VKLATMKMLE---EMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPIT 347
+ KLA + +E E ++ + D +T F+ AM + ++
Sbjct: 687 ICQRACKLAIRQAIEAEIRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVS 746
Query: 348 KSDVKKYERWAK 359
+D++KYE +A+
Sbjct: 747 DNDIRKYEMFAQ 758
Score = 142 bits (354), Expect = 7e-33
Identities = 87/265 (32%), Positives = 149/265 (55%), Gaps = 16/265 (6%)
Query: 88 STITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAV 141
+ + ++DIGG R+ I + + L + ++PP+GIL++GPPGTGK+L+A AV
Sbjct: 196 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 255
Query: 142 ANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLD 200
AN A FF + +++SK GES + F A + SP++IFIDE+D++ KR +
Sbjct: 256 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHG 315
Query: 201 DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSA 258
+ RR++ LL MDG K + +IV+ ATN P +D A+ R I + +PD
Sbjct: 316 EVERRIVSQLLTLMDGMK-KSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGR 374
Query: 259 VEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLR 316
+E+ +IH + +H DV L ++A E+ + G ++A++ A ++ + E +L D L
Sbjct: 375 LEVLRIHTKNMKLHDDVDLEQIAAES--HGHVGADLASLCSEAALQQIRE-KMDLID-LE 430
Query: 317 VSTLKGRDLTTRPLTLDDFKYAMAR 341
+ L + +T+++F+YAM +
Sbjct: 431 DDKIDAEVLASLAVTMENFRYAMTK 455
>pir||T46169 CDC48-like protein - Arabidopsis thaliana
>gi|6630743|emb|CAB64226.1| (AL132958) CDC48-like
protein [Arabidopsis thaliana]
Length = 815
Score = 148 bits (369), Expect = 1e-34
Identities = 98/297 (32%), Positives = 160/297 (52%), Gaps = 22/297 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ ++W DIGGL K+ + + + + K + P +G+L +GPPG GK+
Sbjct: 470 ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT 529
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSL-TM 194
LLA A+AN A F S+K +LL+ +FGES + +F ARQ +P V+F DE+DS+ T
Sbjct: 530 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 589
Query: 195 KRVSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
+ S+ D AA R++ LL EMDG +K V ++ ATN P +D A+L RL IY
Sbjct: 590 RGNSVGDAGGAADRVLNQLLTEMDGMNAKK-TVFIIGATNRPDIIDPALLRPGRLDQLIY 648
Query: 250 VPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANV----VKLATMKM 303
+PLPD S +IFK LR + DV L LAK + +SG +I + K A +
Sbjct: 649 IPLPDEESRYQIFKSCLRKSPVAKDVDLRALAK--YTQGFSGADITEICQRSCKYAIREN 706
Query: 304 LE-EMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAK 359
+E ++ E ++ + + F+ +M + ++ +D++KY+ +A+
Sbjct: 707 IEKDIEKERKRAESPEAMEEDEEEIAEIKAGHFEESMKYARRSVSDADIRKYQAFAQ 763
Score = 132 bits (328), Expect = 8e-30
Identities = 80/228 (35%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++D+GG+R+ I + + L + ++PP+GILL+GPPG+GK+L+A AVAN
Sbjct: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-DDA 202
A FF + +++SK GES + F A + +PS+IFIDE+DS+ KR +
Sbjct: 265 ETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV 324
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
RR++ LL MDG K R VIV+ ATN P +D A+ R I + +PD +E
Sbjct: 325 ERRIVSQLLTLMDGLKSRA-HVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLE 383
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
+ +IH + + DV L R++K+ Y G ++A + A ++ + E
Sbjct: 384 VLRIHTKNMKLAEDVDLERVSKDT--HGYVGADLAALCTEAALQCIRE 429
>pir||T05873 hypothetical protein T29A15.170 - Arabidopsis thaliana
>gi|4469019|emb|CAB38280.1| (AL035602) putative protein
[Arabidopsis thaliana] >gi|7269622|emb|CAB81418.1|
(AL161571) putative protein [Arabidopsis thaliana]
Length = 398
Score = 147 bits (368), Expect = 2e-34
Identities = 107/308 (34%), Positives = 165/308 (52%), Gaps = 29/308 (9%)
Query: 55 EEAKKWEEKAKNVRKRREGK----NEYFDKLKALI---KRSTITWNDIGGLREAKKLIAQ 107
E +KK E K + KR N Y D + + + + IGGL K+ + +
Sbjct: 39 EASKKALEHKKEISKRLGRPLVQTNPYEDVIACDVINPDHIDVEFGSIGGLETIKQALYE 98
Query: 108 AIGLSIAKSPI-------EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSK 160
+ L + + + P +G+LL+GPPGTGK++LA A+A A F +V+ S+L+SK
Sbjct: 99 LVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRVSNLMSK 158
Query: 161 YFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DAARRMIGTLLAEMDGFK- 218
+FG++ KL+SA+FSLA +L P++IFIDEV+S +R S D +A M +A DGF
Sbjct: 159 WFGDAQKLVSAVFSLAYKLQPAIIFIDEVESFLGQRRSTDHEAMANMKTEFMALWDGFST 218
Query: 219 ERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRG--IHYDVPLS 276
+ +V+VL ATN P +LDEA+L RLP + +PD EI K+ L+G + D+
Sbjct: 219 DPHARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAEILKVTLKGERVEPDIDFD 278
Query: 277 RLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRD-LTTRPLTLDDF 335
+A+ + Y+G +I + K A + E+ D R KG+ L RPL+ D
Sbjct: 279 HIAR--LCEGYTGSDIFELCKKAAYFPIR----EILDAER----KGKPCLDPRPLSQLDL 328
Query: 336 KYAMARIK 343
+ +A K
Sbjct: 329 EKVLATSK 336
>gb|AAC02215.1| (AF044488) valosin-containing protein homolog [Trypanosoma brucei]
Length = 780
Score = 147 bits (367), Expect = 2e-34
Identities = 98/291 (33%), Positives = 157/291 (53%), Gaps = 20/291 (6%)
Query: 85 IKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLA 138
++ +TW+D+GGL + K+ + + + + K I P+G+L +GPPG GK+LLA
Sbjct: 458 VETPNVTWSDVGGLLDVKRELQELVQYPVEFPWKFEKYGISAPKGVLFYGPPGCGKTLLA 517
Query: 139 SAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS 198
A+A A F S+K +LL+ +FGES + +F AR +P V+F DE+DS+ R
Sbjct: 518 KAIATECQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSVARSRGH 577
Query: 199 LDD--AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPD 254
D A+ R+I +L EMDG +K+ V ++ ATN P LD A++ RL IY+PLPD
Sbjct: 578 SGDGGASDRVINQILTEMDGMNSKKN-VFIIGATNRPDVLDPAVMRPGRLDQLIYIPLPD 636
Query: 255 VNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLA-TMKMLEEMNPEL 311
S V I K R + DV L +LA A +SG ++A + + A + + E + E+
Sbjct: 637 KASRVAILKASFRKSPLAPDVDLDQLA--AATHGFSGADLAGICQRACKLAIRESIAKEI 694
Query: 312 S-DPLRVSTLKGRDLTTRP---LTLDDFKYAMARIKSPITKSDVKKYERWA 358
+ R + + D P +T + AM + ++ +D++KYE +A
Sbjct: 695 QLEEARANGVLNEDQDIDPVPQITRLHVEEAMRGARRSVSDADIRKYELFA 745
Score = 127 bits (316), Expect = 2e-28
Identities = 80/228 (35%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+ ++DIGG R I + + L I I+PP+GIL++GPPG+GK+L+A AVAN
Sbjct: 190 VGYDDIGGCRRQLVQIREMVELPIRHPELFKSIGIKPPRGILMYGPPGSGKTLIARAVAN 249
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DA 202
A FF + +++SK GES + F + + +P++IFIDE+DS+ KR +
Sbjct: 250 ETGAFFFLINGPEIMSKMAGESEGNLRNAFVESEKNAPAIIFIDEIDSIAPKREKAQGEV 309
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVE 260
+R++ LL MDG K R +VIV+ ATN P +D A+ R I + +PD +E
Sbjct: 310 EKRIVSQLLTLMDGLKGR-SQVIVMAATNRPNAIDPALRRFGRFDREIDIGVPDEIGRLE 368
Query: 261 IFKIHLRGIHYD--VPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
I +IH + + D V + ++AK++ Y G ++A + A M+ + E
Sbjct: 369 ILRIHTKNMKLDPNVDVEKIAKDS--HGYVGADLAQLCTEAAMQCVRE 414
>gi|11499558 26S protease regulatory subunit 4 [Archaeoglobus fulgidus]
>gi|3122632|sp|O28303|PRS1_ARCFU PUTATIVE 26S PROTEASE
REGULATORY SUBUNIT HOMOLOG AF1976
>gi|7435736|pir||G69496 ATP-dependent 26S proteinase
regulatory subunit 4 homolog - Archaeoglobus fulgidus
>gi|2648566|gb|AAB89280.1| (AE000967) 26S protease
regulatory subunit 4 [Archaeoglobus fulgidus]
Length = 398
Score = 146 bits (365), Expect = 3e-34
Identities = 94/235 (40%), Positives = 136/235 (57%), Gaps = 17/235 (7%)
Query: 86 KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLAS 139
++ +++ DIGGL + I +A+ L + K IEPP+G+LL+GPPGTGK+LLA
Sbjct: 134 EKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAK 193
Query: 140 AVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL 199
AVAN ATF V S+ + KY GE ++L+ +F LA++ +PS+IFIDE+D++ +R +
Sbjct: 194 AVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNS 253
Query: 200 DDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLP 253
D + +R + LLAE+DGF R D V V+ ATN LD A+L R I VPLP
Sbjct: 254 DTSGDREVQRTMMQLLAELDGFDPRGD-VKVIGATNRIDILDPAILRPGRFDRIIEVPLP 312
Query: 254 DVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
++IFKIH R + DV LA+ + SG +I + A M + E
Sbjct: 313 TFEGRIQIFKIHTRKMKLAEDVDFKELAR--ITEGASGADIKAICTEAGMFAIRE 365
>pir||F72504 probable 26S proteinase regulatory subunit APE2012 - Aeropyrum
pernix (strain K1) >gi|5105710|dbj|BAA81022.1|
(AP000063) 409aa long hypothetical 26S protease
regulatory subunit [Aeropyrum pernix]
Length = 409
Score = 146 bits (365), Expect = 3e-34
Identities = 103/291 (35%), Positives = 157/291 (53%), Gaps = 38/291 (13%)
Query: 73 GKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGIL 125
G+ + K + +R + + D+GGL E + I +A+ L I K+P I+PP+G+L
Sbjct: 119 GRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPI-KNPHLFRELGIDPPKGVL 177
Query: 126 LFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIF 185
L GPPGTGK+LLA AVA ATF V S+L++K+ GE ++L+ +F LAR+ +PS++F
Sbjct: 178 LHGPPGTGKTLLAKAVAGETEATFIRVVGSELVNKFIGEGARLVREIFRLAREKAPSILF 237
Query: 186 IDEVDSLTMKRVSL----DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML 241
IDE+D++ KRV + D +R + LLAE+DGF + D V V+ ATN +D A+L
Sbjct: 238 IDEIDAIASKRVDIGTSGDREVQRTMLQLLAELDGF-DPLDNVKVIAATNRLDLIDPAVL 296
Query: 242 --SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVK 297
R I VPLP + +EI IH R DV L +AK + +SG ++ VV
Sbjct: 297 RPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAK--LTEGFSGADLKAVVV 354
Query: 298 LATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITK 348
A + +R +T+DD A+ ++K+ + K
Sbjct: 355 EAGYNAIRR-------------------GSRVITMDDMIKAVEKVKAALDK 386
>emb|CAC12300.1| (AL445066) VAT-2 protein [Thermoplasma acidophilum]
Length = 375
Score = 146 bits (365), Expect = 3e-34
Identities = 115/366 (31%), Positives = 182/366 (49%), Gaps = 46/366 (12%)
Query: 21 SLGHYDKARLIALRCAELLRKIAS--------ENLSLSHILLEEAKKWEEKAKNVRKRRE 72
SLGH DKA+ L+ + A+ + L +I+L ++ E E
Sbjct: 26 SLGHKDKAKEYYFAAYRLMLEAANASPPDLKKKRLDQCNIILSAYQRVNEN--RTAPAEE 83
Query: 73 GKNEYFDKLKALIKR--------STITWNDIGGLREAKKLIAQAIGLSIAKSPIEPPQ-- 122
++ + +AL++ +T+ D+ GL + K I I + +
Sbjct: 84 KTSDRISEGEALLEEIGLEKPEIPKVTFEDVAGLDDVKNEILGKIVYPMKFKELSQEYNI 143
Query: 123 ----GILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQ 178
G+LL+GPPGTGK+ + A+AN + A F +V + L S++FG K IS LF A
Sbjct: 144 QFGGGMLLYGPPGTGKTFIVKAIANEVRARFINVNPASLYSQWFGMFEKNISKLFRAAAL 203
Query: 179 LSPSVIFIDEVDSLTMKR-VSLDDAARRMIGTLLAEMDGFKERKDK-VIVLTATNAPWDL 236
LSPS+IF DE+D+L KR S DAA+R + LL E+ G +K+K + ++ ATN PW++
Sbjct: 204 LSPSIIFFDEIDALVPKRDTSNSDAAKRGVAQLLNEVGGINSQKNKNLFIIAATNNPWEI 263
Query: 237 DEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREI 292
DEAML R I+IYVP PD+ + +IF++++ + ++ + LA++ YSG +I
Sbjct: 264 DEAMLRPGRFDIKIYVPPPDIIARKKIFELNMAKVKQAGNIDYNLLAQQT--EGYSGADI 321
Query: 293 ANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVK 352
+ K A+ + E V + K R + TR L LD + IK I +
Sbjct: 322 EFICKKASQNVFME---------AVKSGKQRQVETRDL-LD----VIGSIKPSIDADLLS 367
Query: 353 KYERWA 358
KY +A
Sbjct: 368 KYREFA 373
>gb|AAF17568.1|AF202034_1 (AF202034) endoplasmic reticulum membrane fusion protein
[Drosophila melanogaster]
Length = 799
Score = 146 bits (364), Expect = 5e-34
Identities = 117/372 (31%), Positives = 182/372 (48%), Gaps = 30/372 (8%)
Query: 15 EFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRREGK 74
+ E+ + H +A C+E + E + L I LE+ K E ++ E
Sbjct: 392 DLEQIAAESHGHVGADLASLCSEAALQQIREKMDL--IDLEDDKIDAEVLASLAVTMENF 449
Query: 75 NEYFDKLKALIKRSTI------TWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQ 122
K R T+ TW DIGGL KK + + + + K ++P +
Sbjct: 450 RYAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSR 509
Query: 123 GILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPS 182
G+L +GPPG GK+L A A+AN A F SVK +LL+ +FGES + +F +P
Sbjct: 510 GVLFYGPPGCGKTLPAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKGPSAAPC 569
Query: 183 VIFIDEVDSLTMKR---VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEA 239
V+F DE+DS+ R V AA R+I +L EMDG +K+ V ++ ATN P +D A
Sbjct: 570 VLFFDELDSIAKSRCGNVGDCGAADRVINQILTEMDGMGAKKN-VFIIGATNRPDIIDPA 628
Query: 240 ML--SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANV 295
+L RL IY+PLPD S I K +LR + +V L+ +AK V + +SG ++ +
Sbjct: 629 ILRPGRLDQLIYIPLPDDKSREAILKANLRKFALAKEVDLTYIAK--VTQGFSGADLTEI 686
Query: 296 ----VKLATMKMLE-EMNPELS-DPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKS 349
KLA + +E E+ E + S + D +T F+ AM + ++ +
Sbjct: 687 CQRACKLAIRQAIEAEIRREKERAENQNSAMDDEDDPVPEITSAHFEEAMKFARRSVSDN 746
Query: 350 DVKKYERWAKEF 361
D++KYE +A +F
Sbjct: 747 DIRKYEMFAPDF 758
Score = 142 bits (354), Expect = 7e-33
Identities = 87/265 (32%), Positives = 149/265 (55%), Gaps = 16/265 (6%)
Query: 88 STITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAV 141
+ + ++DIGG R+ I + + L + ++PP+GIL++GPPGTGK+L+A AV
Sbjct: 196 NAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAV 255
Query: 142 ANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLD 200
AN A FF + +++SK GES + F A + SP++IFIDE+D++ KR +
Sbjct: 256 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAIIFIDEIDAIAPKRDKTHG 315
Query: 201 DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSA 258
+ RR++ LL MDG K + +IV+ ATN P +D A+ R I + +PD
Sbjct: 316 EVERRIVSQLLTLMDGMK-KSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGR 374
Query: 259 VEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLR 316
+E+ +IH + +H DV L ++A E+ + G ++A++ A ++ + E +L D L
Sbjct: 375 LEVLRIHTKNMKLHDDVDLEQIAAES--HGHVGADLASLCSEAALQQIRE-KMDLID-LE 430
Query: 317 VSTLKGRDLTTRPLTLDDFKYAMAR 341
+ L + +T+++F+YAM +
Sbjct: 431 DDKIDAEVLASLAVTMENFRYAMTK 455
>gb|AAF24564.1|AC007764_6 (AC007764) F22C12.12 [Arabidopsis thaliana]
Length = 825
Score = 145 bits (363), Expect = 6e-34
Identities = 90/275 (32%), Positives = 153/275 (54%), Gaps = 15/275 (5%)
Query: 48 SLSHILLEEAKKWEEKAKNVRKRREG---KNEYFDKLKALI---KRSTITWNDIGGLREA 101
S++ + +E + E KA+ V + NE+ +++ + + +T+ DIG L E
Sbjct: 443 SVTTVSSKEEPEKEAKAEKVTPKAPEVAPDNEFEKRIRPEVIPAEEINVTFKDIGALDEI 502
Query: 102 KKLIAQAIGLSIAKSPI------EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKAS 155
K+ + + + L + + + +P +GILLFGPPGTGK++LA A+A A+F +V S
Sbjct: 503 KESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMS 562
Query: 156 DLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSL--TMKRVSLDDAARRMIGTLLAE 213
+ SK+FGE K + ALF+LA ++SP++IF+DEVDS+ RV +A R++ ++
Sbjct: 563 TITSKWFGEDEKNVRALFTLASKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSH 622
Query: 214 MDGFKERK-DKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYD 272
DG + ++++VL ATN P+DLDEA++ R RI V LP V + +I + L D
Sbjct: 623 WDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPAVENREKILRTLLAKEKVD 682
Query: 273 VPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM 307
L + Y+G ++ N+ A + + E+
Sbjct: 683 ENLDYKELAMMTEGYTGSDLKNLCTTAAYRPVREL 717
>gb|AAG19767.1| (AE005062) cell division cycle protein; Cdc48a [Halobacterium sp.
NRC-1]
Length = 691
Score = 143 bits (356), Expect = 4e-33
Identities = 87/233 (37%), Positives = 132/233 (56%), Gaps = 11/233 (4%)
Query: 83 ALIKRSTITWNDIGGLREAKKLIAQAIGLS------IAKSPIEPPQGILLFGPPGTGKSL 136
A ++ T T+ DIGGL AK+ + + + + P G+LL GPPGTGK++
Sbjct: 424 ASVQTPTTTYQDIGGLDRAKREVVRTVEWPQRYPALFERLDAAAPTGVLLHGPPGTGKTM 483
Query: 137 LASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR 196
LA AVA S +A F SV +L+++Y GES + + LF AR+L+P+V+F+DEVDSL R
Sbjct: 484 LAKAVAASTDANFLSVDGPELMNRYVGESERGVRDLFERARRLAPAVVFLDEVDSLAPAR 543
Query: 197 VSLD-DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLP 253
D A+ R++ LL E+DG R V VL ATN +D A+L R+ ++ VP+P
Sbjct: 544 HDTDTGASERVVSQLLTELDGLSPR-GSVAVLAATNRRESVDPALLRPGRIETQVAVPIP 602
Query: 254 DVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
D ++ IF++ L G+ + A A Y+G +IA VV+ + +E+
Sbjct: 603 DQDARAAIFEVQLDGVATG-RIDTTALAAATTGYTGSDIAGVVREGALLAMED 654
>gb|AAG19776.1| (AE005063) cell division cycle protein; Cdc48b [Halobacterium sp.
NRC-1]
Length = 759
Score = 143 bits (356), Expect = 4e-33
Identities = 94/284 (33%), Positives = 153/284 (53%), Gaps = 21/284 (7%)
Query: 91 TWNDIGGLREAKKLIAQAIGLSI------AKSPIEPPQGILLFGPPGTGKSLLASAVANS 144
TW D+GGL + K+ + + I + ++ ++ +G+LL+GPPGTGK+LLA AVAN
Sbjct: 467 TWADVGGLTDTKERLRETIQWPLDYPDVFSEMDLQSAKGVLLYGPPGTGKTLLAKAVANE 526
Query: 145 LNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR---VSLDD 201
N+ F SVK +LL+KY GES K + +F AR +P+V+F DE+D++ +R S
Sbjct: 527 ANSNFISVKGPELLNKYVGESEKGVREVFEKARSNAPTVVFFDEIDAIAGQRGRATSDSG 586
Query: 202 AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAV 259
R++ LL E+DG + +D V+V T +N P +D+A+L RL I+VP+PD ++
Sbjct: 587 VGERVVSQLLTELDGIEALEDVVVVAT-SNRPDLIDDALLRPGRLDRHIHVPVPDADARR 645
Query: 260 EIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRV 317
I +H R + DV L +A+ + G ++ +V+ ATM E + DP
Sbjct: 646 AILDVHTRDKPLADDVDLDVVAQRMDG--FVGADVEALVREATMNATREFINSV-DPADA 702
Query: 318 STLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
S G +T+ F+ A+ + + + + YE + F
Sbjct: 703 SDSVG----NVRVTMAHFEAALGEVTASVDADVKENYEEIEQRF 742
Score = 140 bits (350), Expect = 2e-32
Identities = 89/265 (33%), Positives = 148/265 (55%), Gaps = 16/265 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+T+ DIGGL + + + I L + I+PP+G+LL GPPGTGK+L+A AVAN
Sbjct: 193 VTYEDIGGLDGELEQVREMIELPMRHPELFQQLGIDPPKGVLLHGPPGTGKTLIAKAVAN 252
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDA 202
++A F ++ +++SKY+GES + + +F A + +P+++F+DE+DS+ KR + D
Sbjct: 253 EIDAHFETISGPEIMSKYYGESEEKLREVFDEAEENAPAIVFVDELDSIAPKRGETQGDV 312
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVE 260
RR++ LL+ MDG ++R D V V+ ATN +D A+ R I + +PD + E
Sbjct: 313 ERRVVAQLLSLMDGLEDRGD-VTVIAATNRVDAIDPALRRGGRFDREIEIGVPDQDGRKE 371
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I ++H RG+ D+ L A+ + G +I ++ K A M L + P++ L
Sbjct: 372 ILQVHTRGMPLVEDIDLDDYAEST--HGFVGADIESLAKEAAMNALRRVRPDID--LESD 427
Query: 319 TLKGRDLTTRPLTLDDFKYAMARIK 343
+ L + +T DFK A+ I+
Sbjct: 428 EIDAELLESISITEADFKRALNGIE 452
>gb|AAF74998.1| (AF199367) cdc48-like protein [Entamoeba histolytica]
Length = 772
Score = 142 bits (355), Expect = 5e-33
Identities = 91/297 (30%), Positives = 159/297 (52%), Gaps = 22/297 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSI------AKSPIEPPQGILLFGPPGTGKS 135
+ +++ + W DIGGL + K+ + + + + K +EP +G+L FGPPG GK+
Sbjct: 465 ETVVEIPNVKWEDIGGLEDVKRELKEVVQYPVEFPDKFTKFGMEPSKGVLFFGPPGCGKT 524
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA AVA+ A F S+K +LL+ ++GES + +F ARQ +P V+F DE+DS+
Sbjct: 525 LLAKAVASQCKANFISIKGPELLTMWYGESEANVRDVFDKARQAAPCVLFFDELDSIGRA 584
Query: 196 R----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R +A R++ LL EMDG ++K +V ++ ATN P LD A+L RL ++
Sbjct: 585 RGGGAGDAGGSADRILNQLLTEMDGVGKKK-QVFIIGATNRPDILDPALLRPGRLDQLLF 643
Query: 250 VPLPDVNSAVEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM 307
+PLPD S + I + LR + DV L +A+ +SG ++A +V+ A + + +
Sbjct: 644 IPLPDKASRISILQAKLRNSPVAPDVDLDWIAEHTEN--FSGADLAEIVQRACKEAIRDT 701
Query: 308 NPELSDPLRVSTLKGRD----LTTRP-LTLDDFKYAMARIKSPITKSDVKKYERWAK 359
EL+ + D + +P + + F A+ + ++ ++++Y +A+
Sbjct: 702 INELAVAEAEKAAQPEDQKMEIEVKPMIKVKHFNAALRDARRSVSDIEIQRYNMYAE 758
Score = 124 bits (309), Expect = 1e-27
Identities = 85/249 (34%), Positives = 131/249 (52%), Gaps = 17/249 (6%)
Query: 92 WNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVANSL 145
++DIGG R I + + L + I+PP+G+LL+GPPG GK+++A AVAN
Sbjct: 202 YDDIGGCRRQLGQIREMVELPLRHPQLFQAIGIKPPKGVLLYGPPGCGKTMIARAVANET 261
Query: 146 NATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDAAR 204
+ +++SK GES + F+ A + +P++IFIDE+DS+ KR + + R
Sbjct: 262 GVFLILINGPEIMSKMAGESEGNLREAFAEAEKNAPALIFIDEIDSIAPKRDKAQGEVER 321
Query: 205 RMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVEIF 262
R++ LL MDG K R + VIV+ ATN P +D A+ R I + +PD +EI
Sbjct: 322 RVVAQLLTLMDGMKSRSN-VIVMAATNRPNAIDSALRRFGRFDREIDIGVPDETGRLEIL 380
Query: 263 KIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPEL---SDPLRV 317
IH + I DV L ++AKE Y G ++A + A M + E + +D + V
Sbjct: 381 NIHTKKMKIADDVDLLQIAKET--HGYVGADLAQLCTEAAMLCIRENMAHVDVEADSIPV 438
Query: 318 STLKGRDLT 326
L G +T
Sbjct: 439 EVLNGMKVT 447
>gb|AAD31547.1|U53149_5 (U53149) Contains similarity to Pfam domain: PF00004 (AAA),
Score=233.7, E-value=8.6e-67, N=1 [Caenorhabditis
elegans]
Length = 512
Score = 141 bits (351), Expect = 2e-32
Identities = 93/294 (31%), Positives = 153/294 (51%), Gaps = 23/294 (7%)
Query: 81 LKALIKRSTITWNDIGGLREAKKLIAQAIGL-----SIAKSPIEPPQGILLFGPPGTGKS 135
L ++ + + +D+ G AK + +A+ L ++ K +P +GILLFGPPG GK+
Sbjct: 227 LDEVLDNTGVRMDDVAGCHSAKAALEEAVILPALNPNLFKGLRQPVKGILLFGPPGNGKT 286
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA AVA FF++ AS L SK+ G+S K I LF +AR PS+IFIDE+DS+ +
Sbjct: 287 LLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCE 346
Query: 196 RVSLD-DAARRMIGTLLAEMDG-FKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLP 253
R D + +RRM L + DG D+++V+ ATN P +LD+A+L R P RI + LP
Sbjct: 347 RSEKDAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLRRFPKRIMLNLP 406
Query: 254 DVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRL------YSGREIANVVKLATMKMLEEM 307
D + E+ L+ + + L ++ + +S ++ + K A M + E+
Sbjct: 407 DEEARKELITKTLKKHNM---MDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIREI 463
Query: 308 NPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
D ++S G + R + DF A+ I+ ++ + K +++ F
Sbjct: 464 -----DRSKLSMTDGEKI--RKIRASDFDTALRTIRPSTSQKIMSKLSDFSRSF 510
>dbj|BAA83371.1| (AP000391) Similar to Arabidopsis thaliana chromosome II BAC F17K2
genomic sequence; hypothetical protein (AC003680) [Oryza
sativa]
Length = 427
Score = 141 bits (351), Expect = 2e-32
Identities = 104/311 (33%), Positives = 155/311 (49%), Gaps = 62/311 (19%)
Query: 70 RREGKNEYFDKLKALIKRS------TITWNDIGGLREAKKLIAQAIGLSIAKSPI----- 118
+R G N Y DKL +I + + W D+ GL +AK+ + + + L + +
Sbjct: 157 QRAGAN-YDDKLVEMINTTIVDRSPAVKWEDVAGLDKAKQALMEMVILPTKRRDLFTGLR 215
Query: 119 EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQ 178
P +G+LLFGPPG GK++LA AVA+ ATFF+V AS L SK+
Sbjct: 216 RPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSASSLTSKW----------------- 258
Query: 179 LSPSVIFIDEVDSLTMKRVSLDDAARRMIGTLLAEMDGFKERKDK-VIVLTATNAPWDLD 237
ID V ++ + + +DA+RR+ L + DG D VIV+ ATN P +LD
Sbjct: 259 -------IDSV--MSARLANENDASRRLKSEFLIQFDGVTSNPDDLVIVIGATNKPQELD 309
Query: 238 EAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVK 297
+A+L RL RIYVPLPD N + K L+G + LSR YSG ++ + +
Sbjct: 310 DAVLRRLVKRIYVPLPDPNVRRLLLKTQLKGQSF--KLSR---------YSGSDLRALCE 358
Query: 298 LATMKMLEEMNPELSDPLRVSTLKGRDL-------TTRPLTLDDFKYAMARIKSPITKSD 350
A M + E+ P+ + T+K + + RPL +DFK AM I+ + KS
Sbjct: 359 EAAMMPIRELGPQ-----NILTIKANQVFRVTSSYSLRPLKYEDFKKAMTVIRPSLQKSK 413
Query: 351 VKKYERWAKEF 361
+ E+W +EF
Sbjct: 414 WDELEKWNEEF 424
>gb|AAG20864.1| (AE005154) cell division cycle protein; Cdc48d [Halobacterium sp.
NRC-1]
Length = 737
Score = 141 bits (351), Expect = 2e-32
Identities = 91/265 (34%), Positives = 151/265 (56%), Gaps = 16/265 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+T+ DIGGL + + + + I L + IEPP+G+LL GPPGTGK+L+A AVAN
Sbjct: 190 LTYEDIGGLDDELEQVREMIELPMRHPELFGTLGIEPPKGVLLHGPPGTGKTLIAKAVAN 249
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DA 202
++A F ++ +++SKY+GES + + +F A + +P+++FIDE+DS+ KR + D
Sbjct: 250 EIDAHFQTISGPEIMSKYYGESEEQLRDVFEEAEENAPAIVFIDELDSIAPKREDVSGDV 309
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVE 260
RR++ LL+ MDG +ER ++ V+ TN +D A+ R I + +PD + +
Sbjct: 310 ERRVVAQLLSLMDGLEER-GQLTVIGTTNRVDAVDPALRRPGRFDREIEIGVPDHDGREK 368
Query: 261 IFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
I +IH RG+ V L R A+ + + G ++ N+VK + M L + P+L L
Sbjct: 369 ILQIHTRGMPLGDGVDLDRYAENT--QGFVGADLENLVKESAMHALRRIRPDLD--LDEE 424
Query: 319 TLKGRDLTTRPLTLDDFKYAMARIK 343
+ L + +T +DFK A+ I+
Sbjct: 425 EIPADILDSIEVTENDFKEALRGIE 449
Score = 141 bits (351), Expect = 2e-32
Identities = 85/232 (36%), Positives = 135/232 (57%), Gaps = 20/232 (8%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+TW+ +GGL +AK+ + + + + + +EP +G+LL+GPPGTGK+LLA AVAN
Sbjct: 463 VTWDHVGGLDDAKERLQETVQWPLEHADAYEQVALEPAKGVLLYGPPGTGKTLLAKAVAN 522
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR---VSLD 200
N+ F S+K +L +KY GES + + +FS AR+ +P+V+F DE+D++ +R V
Sbjct: 523 EANSNFISIKGPELFNKYVGESERGVREVFSKARENAPTVVFFDEIDAIASERGQGVGDS 582
Query: 201 DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSA 258
+ R++ LL E+DG +E +D ++V+ TN P +D+A+L RL + V PD +
Sbjct: 583 NVGERVVSQLLTELDGLEELED-IVVIATTNRPDLIDDALLRPGRLDRHVAVDEPDEAAR 641
Query: 259 VEIFKIHLRGIHYDVPLSR--LAKEAVKRL--YSGREIANVVKLATMKMLEE 306
EIF+IH D PL+ E V+R Y G +I V + A + E
Sbjct: 642 REIFEIHTE----DKPLAEDVDVDELVERTDGYVGADIEAVCREAATVAVRE 689
>sp|P71408|FTSH_HELPY CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446580|pir||E64653 cell
division protein - Helicobacter pylori (strain 26695)
>gi|2314219|gb|AAD08115.1| (AE000614) cell division
protein (ftsH) [Helicobacter pylori 26695]
Length = 632
Score = 140 bits (350), Expect = 2e-32
Identities = 90/258 (34%), Positives = 137/258 (52%), Gaps = 18/258 (6%)
Query: 60 WEEKAKNVRKRREGKNEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGL-----S 112
W A ++K G K LI ++ + +ND+ G EAK+ + + +
Sbjct: 135 WMFMANRMQKNMGGGIFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPER 194
Query: 113 IAKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISAL 172
A + P+G+LL GPPGTGK+LLA AVA + FFS+ S + + G + + L
Sbjct: 195 YANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDL 254
Query: 173 FSLARQLSPSVIFIDEVDSLTMKR-----VSLDDAARRMIGTLLAEMDGFKERKDKVIVL 227
F A++ +PS+IFIDE+D++ R VS +D + + LLAEMDGF VIVL
Sbjct: 255 FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVL 314
Query: 228 TATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAV 283
ATN P LD A++ R ++ V PD N VEI K+H++G+ DV L +AK +
Sbjct: 315 AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAK--L 372
Query: 284 KRLYSGREIANVVKLATM 301
+G ++AN++ A +
Sbjct: 373 TAGLAGADLANIINEAAL 390
>sp|Q9ZM66|FTSH_HELPJ CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446579|pir||D71941
ATP-dependent zinc metallopeptidase - Helicobacter
pylori (strain J99) >gi|4154882|gb|AAD05932.1|
(AE001471) ATP-DEPENDENT ZINC METALLOPEPTIDASE
[Helicobacter pylori J99]
Length = 632
Score = 140 bits (349), Expect = 3e-32
Identities = 89/258 (34%), Positives = 137/258 (52%), Gaps = 18/258 (6%)
Query: 60 WEEKAKNVRKRREGKNEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGL-----S 112
W A ++K G K LI ++ + +ND+ G EAK+ + + +
Sbjct: 135 WMFMANRMQKNMGGGIFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPER 194
Query: 113 IAKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISAL 172
A + P+G+LL GPPGTGK+LLA AVA + FFS+ S + + G + + L
Sbjct: 195 YANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDL 254
Query: 173 FSLARQLSPSVIFIDEVDSLTMKR-----VSLDDAARRMIGTLLAEMDGFKERKDKVIVL 227
F A++ +PS+IFIDE+D++ R +S +D + + LLAEMDGF VIVL
Sbjct: 255 FETAKKQAPSIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVL 314
Query: 228 TATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAV 283
ATN P LD A++ R ++ V PD N VEI K+H++G+ DV L +AK +
Sbjct: 315 AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAK--L 372
Query: 284 KRLYSGREIANVVKLATM 301
+G ++AN++ A +
Sbjct: 373 TAGLAGADLANIINEAAL 390
>pir||T23322 hypothetical protein K04G2.3 - Caenorhabditis elegans
>gi|3878262|emb|CAB00040.1| (Z75712) contains similarity
to Pfam domain: PF00004 (ATPases associated with various
cellular activities (AAA)), Score=305.8,
E-value=1.6e-88, N=1~cDNA EST yk353e8.5 comes from this
gene [Caenorhabditis elegans]
Length = 724
Score = 139 bits (348), Expect = 3e-32
Identities = 89/235 (37%), Positives = 133/235 (55%), Gaps = 14/235 (5%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSL 136
+++ ++WNDIGG E K I QA+ + K P I+PP GILL+GPPG K+L
Sbjct: 450 ILEVPNVSWNDIGGNEELKLEIQQAV-IWPQKHPEAFERFGIDPPAGILLYGPPGCSKTL 508
Query: 137 LASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR 196
+A A+A+ F +VK +L SK+ G+S K I LFS ARQ++P+++F DE+D++ R
Sbjct: 509 IARALASEAKMNFLAVKGPELFSKWVGDSEKAIRDLFSRARQVAPTIVFFDEIDAVGSSR 568
Query: 197 VS--LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPL 252
S + R++ LL E+DG E+ +VI+L ATN P LD A+L RL IYV L
Sbjct: 569 GSEKSSGVSDRVLAQLLTELDGL-EKSSRVILLAATNRPDQLDSALLRPGRLDRAIYVGL 627
Query: 253 PDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRL-YSGREIANVVKLATMKMLEE 306
P + I ++ + + +D + + K K YSG E+ V + A M + E
Sbjct: 628 PCEVTRRAILEMRTKKMKFDDTVRTIDKLVEKTSGYSGAELVAVCRTAAMFAMRE 682
>gb|AAF91246.1|AF227502_1 (AF227502) proteasome regulatory ATPase subunit 4 [Trypanosoma
brucei]
Length = 399
Score = 139 bits (348), Expect = 3e-32
Identities = 83/234 (35%), Positives = 137/234 (58%), Gaps = 16/234 (6%)
Query: 81 LKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGK 134
++ + I++ +IGGL+E + + + + L + I PP+G+LL+GPPGTGK
Sbjct: 131 MQVMENEKNISFQEIGGLQEQMRQMREVVELPLTNPELFVRVGISPPKGVLLYGPPGTGK 190
Query: 135 SLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTM 194
+LLA A+A++++A F + AS ++ KY GES++++ +F+ AR P +IFIDEVD++
Sbjct: 191 TLLAKAIASNVDAAFLKIVASSIVDKYIGESARVLREMFAFARDHEPCIIFIDEVDAIGG 250
Query: 195 KRV---SLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
KR+ S D +R + LL +MDGF E+ KV V+ ATN P LD A++ RL +I
Sbjct: 251 KRIEGSSSDREVQRTLMELLHQMDGF-EKLGKVKVIMATNRPDTLDPALMRPGRLDRKIE 309
Query: 250 VPLPDVNSAVEIFKIHLRGI--HYDVPLSRLAKEAVKRLYSGREIANVVKLATM 301
+ LP+ +++ KIH I D+ + K + ++G ++ NV A M
Sbjct: 310 IGLPNEAGRLDVLKIHASKITKQGDIDYDSIVK--LSEGFNGADLRNVCTEAGM 361
>emb|CAA67594.1| (X99207) smallminded [Drosophila melanogaster]
Length = 943
Score = 139 bits (347), Expect = 4e-32
Identities = 103/300 (34%), Positives = 151/300 (50%), Gaps = 31/300 (10%)
Query: 80 KLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGT 132
K + I TW+DIG L + ++ + A+ L+ K P + P G+LL GPPG
Sbjct: 648 KREGFITVPDTTWDDIGALEKIREELKLAV-LAPVKYPEMLERLGLTAPSGVLLCGPPGC 706
Query: 133 GKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSL 192
GK+LLA A+AN F SVK +L++ Y GES + + A F AR +P VIF DE DSL
Sbjct: 707 GKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSL 766
Query: 193 TMKRVSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIR 247
KR D + R++ LL EMDG +ERK V +L ATN P +D A+L RL
Sbjct: 767 CPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKG-VYILAATNRPDIIDPAILRPGRLDTI 825
Query: 248 IYVPLPDVNSAVEIFKIHLRG-----IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMK 302
+YV P+ + EI K + + DV L +A A Y+G ++A +VK A+M
Sbjct: 826 LYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIA--AQTEGYTGADLAGLVKQASMF 883
Query: 303 MLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFA 362
L + L DL R F+ A+ +++ + + D K Y++ ++A
Sbjct: 884 SLRQ-------SLNNGDTNLDDLCVRS---QHFQEALQQLRPSVNEQDRKIYDKLRLKYA 933
Score = 99.5 bits (244), Expect = 5e-20
Identities = 96/371 (25%), Positives = 172/371 (45%), Gaps = 28/371 (7%)
Query: 9 VQKCQEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVR 68
+++ EE K I + +E ++K+ + + L E+A + +NV
Sbjct: 159 LKRLMEEVPEIAVAAKKAKPNTIHVSSSEAIQKLHQVVGNRAKNLSEDAVPRSKDHRNVP 218
Query: 69 K--RREGKNEYFDKLKAL-----IKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP---- 117
++ +N+ D+L+ ++ T ++ DIGG+ K + + L KSP
Sbjct: 219 GLYQQLHQNQSRDRLRKFKRDLEVQHPTESFRDIGGMDSTLKELCEM--LIHIKSPEFYF 276
Query: 118 ---IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFS 174
+ P +G+LL GPPG GK+ LA A++ L + A++L+ GES + I +F
Sbjct: 277 QLGLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFD 336
Query: 175 LARQLSPSVIFIDEVDSLTMKRV-SLDDAARRMIGTLLAEMDGFK--ERKDKVIVLTATN 231
A SP V+FIDE+D++ R + D RR++ L++ +D K E V+V+ AT
Sbjct: 337 QAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATT 396
Query: 232 APWDLDEAM--LSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSG 289
P LD + + R I + +P EI +I G+ D L+ + Y G
Sbjct: 397 RPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVDPKLNYDKIAELTPGYVG 456
Query: 290 REIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKS 349
++ +V A ++ + + L ++ K ++TT +TLDD + + ++P+ S
Sbjct: 457 ADLMALVSRAASVAVKRRSMKKFRELHAASEK--NMTT--VTLDDDEPSEDAGETPVPDS 512
Query: 350 DVKKYERWAKE 360
K E AK+
Sbjct: 513 ---KGEETAKD 520
>gb|AAF50566.1| (AE003559) smid gene product [Drosophila melanogaster]
Length = 944
Score = 139 bits (347), Expect = 4e-32
Identities = 103/300 (34%), Positives = 151/300 (50%), Gaps = 31/300 (10%)
Query: 80 KLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGT 132
K + I TW+DIG L + ++ + A+ L+ K P + P G+LL GPPG
Sbjct: 649 KREGFITVPDTTWDDIGALEKIREELKLAV-LAPVKYPEMLERLGLTAPSGVLLCGPPGC 707
Query: 133 GKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSL 192
GK+LLA A+AN F SVK +L++ Y GES + + A F AR +P VIF DE DSL
Sbjct: 708 GKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSL 767
Query: 193 TMKRVSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIR 247
KR D + R++ LL EMDG +ERK V +L ATN P +D A+L RL
Sbjct: 768 CPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKG-VYILAATNRPDIIDPAILRPGRLDTI 826
Query: 248 IYVPLPDVNSAVEIFKIHLRG-----IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMK 302
+YV P+ + EI K + + DV L +A A Y+G ++A +VK A+M
Sbjct: 827 LYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIA--AQTEGYTGADLAGLVKQASMF 884
Query: 303 MLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFA 362
L + L DL R F+ A+ +++ + + D K Y++ ++A
Sbjct: 885 SLRQ-------SLNNGDTNLDDLCVRS---QHFQEALQQLRPSVNEQDRKIYDKLRLKYA 934
Score = 99.8 bits (245), Expect = 4e-20
Identities = 97/367 (26%), Positives = 173/367 (46%), Gaps = 28/367 (7%)
Query: 13 QEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRK--R 70
+E E A++ K I + +E ++K+ + + L E+A + +NV +
Sbjct: 164 EEVPEIAVAAKKVAKPNTIHVSSSEAIQKLHQVVGNRAKNLSEDAVPRSKDHRNVPGLYQ 223
Query: 71 REGKNEYFDKLKAL-----IKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------I 118
+ +N+ D+L+ ++ T ++ DIGG+ K + + L KSP +
Sbjct: 224 QLHQNQSRDRLRKFKRDLEVQHPTESFRDIGGMDSTLKELCEM--LIHIKSPEFYFQLGL 281
Query: 119 EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQ 178
P +G+LL GPPG GK+ LA A++ L + A++L+ GES + I +F A
Sbjct: 282 LPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIG 341
Query: 179 LSPSVIFIDEVDSLTMKRV-SLDDAARRMIGTLLAEMDGFK--ERKDKVIVLTATNAPWD 235
SP V+FIDE+D++ R + D RR++ L++ +D K E V+V+ AT P
Sbjct: 342 YSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDV 401
Query: 236 LDEAM--LSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIA 293
LD + + R I + +P EI +I G+ D L+ + Y G ++
Sbjct: 402 LDPGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLSVDPKLNYDKIAELTPGYVGADLM 461
Query: 294 NVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKK 353
+V A ++ + + L ++ K ++TT +TLDD + + ++P+ S K
Sbjct: 462 ALVSRAASVAVKRRSMKKFRELHAASEK--NMTT--VTLDDDEPSEDAGETPVPDS---K 514
Query: 354 YERWAKE 360
E AK+
Sbjct: 515 GEETAKD 521
>gb|AAB66377.1| (U97567) FtsH [Helicobacter pylori]
Length = 632
Score = 139 bits (346), Expect = 6e-32
Identities = 89/258 (34%), Positives = 136/258 (52%), Gaps = 18/258 (6%)
Query: 60 WEEKAKNVRKRREGKNEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGL-----S 112
W A ++K G K LI ++ + +ND+ G EAK+ + + +
Sbjct: 135 WMFMANRMQKNMGGGIFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPER 194
Query: 113 IAKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISAL 172
A + P+G+LL GPPGTGK+LLA AVA + FFS+ S + + G + + L
Sbjct: 195 YANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDL 254
Query: 173 FSLARQLSPSVIFIDEVDSLTMKR-----VSLDDAARRMIGTLLAEMDGFKERKDKVIVL 227
F A++ +PS+IFIDE+D++ R VS +D + + LAEMDGF VIVL
Sbjct: 255 FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQFLAEMDGFGSENAPVIVL 314
Query: 228 TATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAV 283
ATN P LD A++ R ++ V PD N VEI K+H++G+ DV L +AK +
Sbjct: 315 AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAK--L 372
Query: 284 KRLYSGREIANVVKLATM 301
+G ++AN++ A +
Sbjct: 373 TAGLAGADLANIINEAAL 390
>gb|AAG10801.1|AC022284_6 (AC022284) L3377.6 [Leishmania major]
Length = 361
Score = 138 bits (344), Expect = 1e-31
Identities = 86/272 (31%), Positives = 145/272 (52%), Gaps = 16/272 (5%)
Query: 85 IKRSTITWNDIGGLREAKKLIAQAIG-------LSIAKSPIEPPQGILLFGPPGTGKSLL 137
I + + ++D+GGL + K + + I L K+ P+G+LL+GPPGTGK+LL
Sbjct: 92 IDKIDVDFSDVGGLEDVKDALTEHIKWPFQHQELFSGKTVRSHPKGVLLYGPPGTGKTLL 151
Query: 138 ASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRV 197
A A+A L +F +V + SK+ G++ + +A+F+LA ++SP VIF+DE+DSL R
Sbjct: 152 ARALAKELGCSFINVNTESIFSKWVGDTERNAAAVFTLAAKISPCVIFVDEIDSLLSSRS 211
Query: 198 SLDDAARRMIGTL-LAEMDGFKERKD-KVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDV 255
++D T+ + DG ++ D ++IV+ ATN + +D+A+ RLP+++ VP PD
Sbjct: 212 AMDATPHMHAKTIFMTHWDGLEKDSDARIIVVGATNRRFTIDDAIRRRLPLQLEVPPPDA 271
Query: 256 NSAVEIFKIHL-RGIHYDVPLSRLAKEAVKRL--YSGREIANVVKLATMKMLEEMNPELS 312
+ +I I L + Y+ L + + Y+G +++ + K A + L EM +
Sbjct: 272 KAREKILSILLAHDLEYNPKKDGLIRYVALKTAEYTGSDLSELCKAAALMPLREMESMKA 331
Query: 313 DPLRVSTLKGRDLTTRPLTLDDFKYAMARIKS 344
T PLT F AM R+K+
Sbjct: 332 G----GASSAAPETVPPLTQQHFDKAMERVKA 359
>pir||T50928 calmodulin-binding protein [imported] - Arabidopsis thaliana
>gi|6760428|gb|AAF28347.1| (AF217546) calmodulin-binding
protein [Arabidopsis thaliana]
>gi|6760430|gb|AAF28348.1| (AF217547) calmodulin-binding
protein [Arabidopsis thaliana]
Length = 1022
Score = 137 bits (342), Expect = 2e-31
Identities = 86/238 (36%), Positives = 131/238 (54%), Gaps = 16/238 (6%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGL------SIAKSPIEPPQGILLFGPPGTGKS 135
+ +++ + W D+GG E K + +A+ + + PP GIL+FGPPG K+
Sbjct: 713 EVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKT 772
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
L+A AVA+ F +VK +L SK+ GES K + +LF+ AR +PS+IF DE+DSL
Sbjct: 773 LMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASI 832
Query: 196 RVSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYV 250
R +D + R++ LL E+DG +R V V+ ATN P +D A+L R +YV
Sbjct: 833 RGKENDGVSVSDRVMSQLLVELDGLHQRVG-VTVIAATNRPDKIDSALLRPGRFDRLLYV 891
Query: 251 PLPDVNSAVEIFKIHLRGI--HYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
P+ I KIHLR I D+ L LA ++ + Y+G +I+ + + A + LEE
Sbjct: 892 GPPNETDREAILKIHLRKIPCSSDICLKELA--SITKGYTGADISLICREAAIAALEE 947
Score = 103 bits (254), Expect = 4e-21
Identities = 60/187 (32%), Positives = 101/187 (53%), Gaps = 9/187 (4%)
Query: 95 IGGLREAKKLIAQAIGLSIAKSPIE-----PPQGILLFGPPGTGKSLLASAVANSLNATF 149
+GGL + ++ I S K+ + P +G+L+ GPPGTGK+ LA A F
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNSLSGLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVNF 446
Query: 150 FSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLT-MKRVSLDDAARRMIG 208
FSV +++S+Y GES K + +F A +P+ +FID++D++ ++ ++ ++RM+
Sbjct: 447 FSVNGPEIISQYLGESEKALDEVFRSASNATPAAVFIDDLDAIAPARKEGGEELSQRMVA 506
Query: 209 TLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHL 266
TLL MDG R D V+V+ ATN P ++ A+ RL I + P +I + L
Sbjct: 507 TLLNLMDGI-SRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGAPSSTQRSDILHVIL 565
Query: 267 RGIHYDV 273
G+ + +
Sbjct: 566 CGMRHSL 572
>pir||T51257 calmodulin-binding protein - Arabidopsis thaliana
>gi|9662988|emb|CAC00732.1| (AL390921)
calmodulin-binding protein [Arabidopsis thaliana]
Length = 1022
Score = 137 bits (342), Expect = 2e-31
Identities = 86/238 (36%), Positives = 131/238 (54%), Gaps = 16/238 (6%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGL------SIAKSPIEPPQGILLFGPPGTGKS 135
+ +++ + W D+GG E K + +A+ + + PP GIL+FGPPG K+
Sbjct: 713 EVILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMFGPPGCSKT 772
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
L+A AVA+ F +VK +L SK+ GES K + +LF+ AR +PS+IF DE+DSL
Sbjct: 773 LMARAVASEAKLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDSLASI 832
Query: 196 RVSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYV 250
R +D + R++ LL E+DG +R V V+ ATN P +D A+L R +YV
Sbjct: 833 RGKENDGVSVSDRVMSQLLVELDGLHQRVG-VTVIAATNRPDKIDSALLRPGRFDRLLYV 891
Query: 251 PLPDVNSAVEIFKIHLRGI--HYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
P+ I KIHLR I D+ L LA ++ + Y+G +I+ + + A + LEE
Sbjct: 892 GPPNETDREAILKIHLRKIPCSSDICLKELA--SITKGYTGADISLICREAAIAALEE 947
Score = 109 bits (269), Expect = 6e-23
Identities = 63/187 (33%), Positives = 104/187 (54%), Gaps = 9/187 (4%)
Query: 95 IGGLREAKKLIAQAIGLSIAKSPIE-----PPQGILLFGPPGTGKSLLASAVANSLNATF 149
+GGL + ++ I S K+ + P +G+L+ GPPGTGK+ LA A F
Sbjct: 387 LGGLSKEYAILRDIIDSSSIKNSLSSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVNF 446
Query: 150 FSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLT-MKRVSLDDAARRMIG 208
FSV +++S+Y GES K + +F A +P+V+FID++D++ ++ ++ ++RM+
Sbjct: 447 FSVNGPEIISQYLGESEKALDEVFRSASNATPAVVFIDDLDAIAPARKEGGEELSQRMVA 506
Query: 209 TLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHL 266
TLL MDG R D V+V+ ATN P ++ A+ RL I + +P +I I L
Sbjct: 507 TLLNLMDGI-SRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPSSTQRSDILHIIL 565
Query: 267 RGIHYDV 273
RG+ + +
Sbjct: 566 RGMRHSL 572
>gb|AAF05624.1| (AF059715) cell survival CED-4-interacting protein MAC-1
[Caenorhabditis elegans]
Length = 813
Score = 137 bits (341), Expect = 2e-31
Identities = 93/289 (32%), Positives = 149/289 (51%), Gaps = 28/289 (9%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSPIEP-------PQGILLFGPPGTGKSLLASAVA 142
++W+DIG L E +K + +I I ++ PQGILL GPPG GK+LLA AVA
Sbjct: 530 VSWDDIGALVEVRKQLEWSILYPIKRADDFAALGIDCRPQGILLCGPPGCGKTLLAKAVA 589
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDA 202
N FFSVK +LL+ Y GES + + +F AR P VIF DE+D+L KR + +
Sbjct: 590 NETGMNFFSVKGPELLNMYVGESERAVRTVFQRARDSQPCVIFFDEIDALVPKRSHGESS 649
Query: 203 -ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAV 259
R++ LL EMDG E + KV ++ ATN P +D A+L RL ++V P V V
Sbjct: 650 GGARLVNQLLTEMDGV-EGRQKVFLIGATNRPDIVDAAILRPGRLDKILFVDFPSVEDRV 708
Query: 260 EIFKIHLRG-----IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDP 314
+I + + + D+ +A+ ++G ++A + ++ L+
Sbjct: 709 DILRKSTKNGTRPMLGEDIDFHEIAQLPELAGFTGADLAVFIHELSLLALQ--------- 759
Query: 315 LRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFAI 363
+ + D + + + + F+ A +RI+ +T++D KKYE K + +
Sbjct: 760 ---ARVLENDESVKGVGMRHFREAASRIRPSVTEADRKKYEHMKKIYGL 805
Score = 74.9 bits (181), Expect = 1e-12
Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 43/235 (18%)
Query: 86 KRSTITWNDIGGL-REAKKLIAQAIGLSIAKS----PIEPPQGILLFGPPGTGKSLLASA 140
+ S + + IGG R+ ++ A+ L K+ ++PP+G ++ GPPG GK++ A A
Sbjct: 199 RESHVKFEHIGGADRQFLEVCRLAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQA 258
Query: 141 VANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD 200
VA L + A++L+S GE+ + I LF A+Q SP ++ +D++D++ +R +
Sbjct: 259 VAGELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQ 318
Query: 201 -DAARRMIGTLLAEMDGF------KERKDK----------------------VIVLTATN 231
+ RR++ L + +D K KD+ V+V+ T+
Sbjct: 319 REMERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTS 378
Query: 232 APWDLDEAM--LSRLPIRIYVPLPDVNSAVEIF----KIHLRGIHYDVPLSRLAK 280
P +D + R I + +PD + +I K++L G DV L ++AK
Sbjct: 379 RPDAVDGRLRRTGRFQNEISLGIPDETAREKILEKICKVNLAG---DVTLKQIAK 430
>gb|AAG29874.1| (AF313486) valosin-containing protein [Homo sapiens]
Length = 305
Score = 136 bits (340), Expect = 3e-31
Identities = 78/198 (39%), Positives = 117/198 (58%), Gaps = 13/198 (6%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKS 135
+ +++ +TW DIGGL + K+ + + + + K + P +G+L +GPPG GK+
Sbjct: 94 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 153
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
LLA A+AN A F S+K +LL+ +FGES + +F ARQ +P V+F DE+DS+
Sbjct: 154 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 213
Query: 196 R-VSLDD---AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
R ++ D AA R+I +L EMDG +K+ V ++ ATN P +D A+L R IY
Sbjct: 214 RGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRPDQLIY 272
Query: 250 VPLPDVNSAVEIFKIHLR 267
+PLPD S V I K +LR
Sbjct: 273 IPLPDEKSRVAILKANLR 290
>emb|CAB60418.1| (AL117203) contains similarity to Pfam domain: PF00004 (ATPases
associated with various cellular activities (AAA)),
Score=524.3, E-value=2.9e-154, N=2~cDNA EST yk185f2.3
comes from this gene~cDNA EST yk185f2.5 comes from this
gene~cDNA EST yk269c8.3 co>
Length = 757
Score = 136 bits (340), Expect = 3e-31
Identities = 92/289 (31%), Positives = 150/289 (51%), Gaps = 28/289 (9%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSPIEP-------PQGILLFGPPGTGKSLLASAVA 142
++W+DIG L E +K + +I I ++ PQGILL GPPG GK+LLA AVA
Sbjct: 474 VSWDDIGALVEVRKQLEWSILYPIKRADDFAALGIDCRPQGILLCGPPGCGKTLLAKAVA 533
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDA 202
N F SVK +LL+ Y GES + + +F AR P VIF DE+D+L KR + +
Sbjct: 534 NETGMNFISVKGPELLNMYVGESERAVRTVFQRARDSQPCVIFFDEIDALVPKRSHGESS 593
Query: 203 -ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAV 259
R++ LL EMDG E + KV ++ ATN P +D A+L RL ++V P V V
Sbjct: 594 GGARLVNQLLTEMDGV-EGRQKVFLIGATNRPDIVDAAILRPGRLDKILFVDFPSVEDRV 652
Query: 260 EIFKIHLRG-----IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDP 314
+I + + + D+ +A+ ++G ++A ++ +++ L+
Sbjct: 653 DILRKSTKNGTRPMLGEDIDFHEIAQLPELAGFTGADLAALIHESSLLALQ--------- 703
Query: 315 LRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFAI 363
+ + D + + + + F+ A +RI+ +T++D KKYE K + +
Sbjct: 704 ---ARVLENDESVKGVGMRHFREAASRIRPSVTEADRKKYEHMKKIYGL 749
Score = 75.3 bits (182), Expect = 1e-12
Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 43/235 (18%)
Query: 86 KRSTITWNDIGGL-REAKKLIAQAIGLSIAKS----PIEPPQGILLFGPPGTGKSLLASA 140
+ S + + IGG R+ ++ A+ L K+ ++PP+G ++ GPPG GK++ A A
Sbjct: 143 RESHVKFEHIGGADRQFLEVCRLAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQA 202
Query: 141 VANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD 200
VA L + A++L+S GE+ + I LF A+Q SP ++ +D++D++ +R +
Sbjct: 203 VAGELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQ 262
Query: 201 -DAARRMIGTLLAEMDGF------KERKDK----------------------VIVLTATN 231
+ RR++ L + +D K KD+ V+V+ T+
Sbjct: 263 REMERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTS 322
Query: 232 APWDLDEAM--LSRLPIRIYVPLPDVNSAVEIF----KIHLRGIHYDVPLSRLAK 280
P +D + R I + +PD + +I K++L G DV L ++AK
Sbjct: 323 RPDAVDGGLRRAGRFENEISLGIPDETAREKILEKICKVNLAG---DVTLKQIAK 374
>pir||T31590 hypothetical protein Y48C3A.h - Caenorhabditis elegans
Length = 856
Score = 136 bits (340), Expect = 3e-31
Identities = 92/289 (31%), Positives = 150/289 (51%), Gaps = 28/289 (9%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSPIEP-------PQGILLFGPPGTGKSLLASAVA 142
++W+DIG L E +K + +I I ++ PQGILL GPPG GK+LLA AVA
Sbjct: 573 VSWDDIGALVEVRKQLEWSILYPIKRADDFAALGIDCRPQGILLCGPPGCGKTLLAKAVA 632
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDA 202
N F SVK +LL+ Y GES + + +F AR P VIF DE+D+L KR + +
Sbjct: 633 NETGMNFISVKGPELLNMYVGESERAVRTVFQRARDSQPCVIFFDEIDALVPKRSHGESS 692
Query: 203 -ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAV 259
R++ LL EMDG E + KV ++ ATN P +D A+L RL ++V P V V
Sbjct: 693 GGARLVNQLLTEMDGV-EGRQKVFLIGATNRPDIVDAAILRPGRLDKILFVDFPSVEDRV 751
Query: 260 EIFKIHLRG-----IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDP 314
+I + + + D+ +A+ ++G ++A ++ +++ L+
Sbjct: 752 DILRKSTKNGTRPMLGEDIDFHEIAQLPELAGFTGADLAALIHESSLLALQ--------- 802
Query: 315 LRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFAI 363
+ + D + + + + F+ A +RI+ +T++D KKYE K + +
Sbjct: 803 ---ARVLENDESVKGVGMRHFREAASRIRPSVTEADRKKYEHMKKIYGL 848
Score = 75.3 bits (182), Expect = 1e-12
Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 43/235 (18%)
Query: 86 KRSTITWNDIGGL-REAKKLIAQAIGLSIAKS----PIEPPQGILLFGPPGTGKSLLASA 140
+ S + + IGG R+ ++ A+ L K+ ++PP+G ++ GPPG GK++ A A
Sbjct: 242 RESHVKFEHIGGADRQFLEVCRLAMHLKRPKTFATLGVDPPRGFIVHGPPGCGKTMFAQA 301
Query: 141 VANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD 200
VA L + A++L+S GE+ + I LF A+Q SP ++ +D++D++ +R +
Sbjct: 302 VAGELAIPMLQLAATELVSGVSGETEEKIRRLFDTAKQNSPCILILDDIDAIAPRRETAQ 361
Query: 201 -DAARRMIGTLLAEMDGF------KERKDK----------------------VIVLTATN 231
+ RR++ L + +D K KD+ V+V+ T+
Sbjct: 362 REMERRVVSQLCSSLDELVLPPREKPLKDQLTFGDDGSVAIIGDSPTAAGAGVLVIGTTS 421
Query: 232 APWDLDEAM--LSRLPIRIYVPLPDVNSAVEIF----KIHLRGIHYDVPLSRLAK 280
P +D + R I + +PD + +I K++L G DV L ++AK
Sbjct: 422 RPDAVDGGLRRAGRFENEISLGIPDETAREKILEKICKVNLAG---DVTLKQIAK 473
>sp|O32617|FTSH_HELFE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|11278958|pir||T47267 cell
cycle protein [imported] - Helicobacter felis
>gi|2660540|emb|CAA05102.1| (AJ001932) cell cycle
protein [Helicobacter felis]
Length = 638
Score = 136 bits (339), Expect = 4e-31
Identities = 88/258 (34%), Positives = 136/258 (52%), Gaps = 18/258 (6%)
Query: 60 WEEKAKNVRKRREGKNEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGL-----S 112
W A ++K G K LI ++ + +ND+ G EAK+ + + +
Sbjct: 141 WMFMASRMQKNMGGGIFGMGSSKKLINAEKPKVRFNDMAGNEEAKEEVVEIVDFLKYPDR 200
Query: 113 IAKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISAL 172
A + P+G+LL GPPGTGK+LLA AVA + FFS+ S + + G + + L
Sbjct: 201 YASLGAKIPKGVLLVGPPGTGKTLLAKAVAGEASVPFFSMGGSSFIEMFVGLGASRVRDL 260
Query: 173 FSLARQLSPSVIFIDEVDSLTMKR-----VSLDDAARRMIGTLLAEMDGFKERKDKVIVL 227
F +A++ +PS+IFIDE+D++ R +S +D + + LLAEMDGF VIVL
Sbjct: 261 FDIAKKEAPSIIFIDEIDAIGKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVL 320
Query: 228 TATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAV 283
ATN P LD A+L R ++ V PD VEI K+H++ + DV L +AK +
Sbjct: 321 AATNRPEILDPALLRPGRFDRQVLVDKPDFKGRVEILKVHIKPVKLANDVDLQEIAK--L 378
Query: 284 KRLYSGREIANVVKLATM 301
+G ++AN++ A +
Sbjct: 379 TAGLAGADLANIINEAAL 396
>pir||T40537 AAA family ATPase - fission yeast (Schizosaccharomyces pombe)
>gi|3116137|emb|CAA18886.1| (AL023288) AAA family ATPase
[Schizosaccharomyces pombe]
Length = 809
Score = 136 bits (338), Expect = 5e-31
Identities = 86/286 (30%), Positives = 152/286 (53%), Gaps = 31/286 (10%)
Query: 84 LIKRSTITWNDIGGLREAKKLIAQAI------GLSIAKSPIEPPQGILLFGPPGTGKSLL 137
+++ + W+DIGG E K+ + +++ G + ++ + PP+G+LL+GPPG K++
Sbjct: 539 MMESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTIT 598
Query: 138 ASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRV 197
A A+A F +VK +L K+ GES + + +F ARQ SPSVIF DE+D+LT R
Sbjct: 599 AKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQASPSVIFFDEIDALTANR- 657
Query: 198 SLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDV 255
D+++ R++ LL E+DG + ++ V+VL ATN P +D A++ RL +YV P+
Sbjct: 658 GEDNSSDRVVAALLNELDGIEALRN-VLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNF 716
Query: 256 NSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSD 313
+ +I KI + + DV L +A++ SG E+ + + A + + E
Sbjct: 717 EARKQIVKIQAEKMKFAEDVDLDLIAEKT--EGCSGAEVVALCQEAGLIAMHE------- 767
Query: 314 PLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAK 359
DL + + FK A+ ++ IT+ ++ Y +++
Sbjct: 768 ----------DLEAKEICQAHFKTALLALRKAITRDMLEYYASFSE 803
Score = 132 bits (329), Expect = 6e-30
Identities = 98/352 (27%), Positives = 174/352 (48%), Gaps = 33/352 (9%)
Query: 2 YRLQLLQVQKCQEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWE 61
Y+++ + ++ E A+S D+ R+ A + + L L H E
Sbjct: 203 YKVKEIHIRSPSNLIE-AISDMSLDEPRIYKFTAASSMEIETPDLLKLPH---------E 252
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP---- 117
++ ++ + + + FD S +T++ IGGL+ I + L
Sbjct: 253 DRTQSAYNQGSEETQNFDG-----PPSAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKF 307
Query: 118 --IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSL 175
I PP+G+LL+GPPGTGK+++ AVA NA F++ ++ KY GE+ + +F
Sbjct: 308 FNIMPPRGVLLYGPPGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFED 367
Query: 176 ARQLSPSVIFIDEVDSLTMKRV-SLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPW 234
AR PS+IFIDE+D+L KR + +A R + TLL +DG KV+V+ ATN P
Sbjct: 368 ARAHQPSIIFIDEIDALAPKRTEDVSEAESRAVATLLTLLDGM-ANAGKVVVIAATNRPN 426
Query: 235 DLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVK-RLYSGRE 291
+DEA+ RL I + +PD ++ ++I K+ L G+ ++ ++L A + Y G +
Sbjct: 427 SIDEALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGAD 486
Query: 292 IANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIK 343
+A VV+ A ++ ++ D G D+ + +DD ++A++ ++
Sbjct: 487 LAAVVREAALRAIKRTISLQKD------TSGLDI-FGAVQMDDLEFALSSVR 531
>gb|AAC44563.1| (U59452) HpFtsH [Helicobacter pylori]
Length = 632
Score = 135 bits (337), Expect = 7e-31
Identities = 87/258 (33%), Positives = 135/258 (51%), Gaps = 18/258 (6%)
Query: 60 WEEKAKNVRKRREGKNEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGL-----S 112
W A ++K G K LI ++ + +ND+ G EAK+ + + +
Sbjct: 135 WMFMANRMQKNMGGGIFGMGSAKKLINAEKPNVRFNDMAGNEEAKEEVVEIVDFLKYPER 194
Query: 113 IAKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISAL 172
A + P+G+LL GPPGTGK+LLA AVA + FFS+ S + + G + + L
Sbjct: 195 YANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDL 254
Query: 173 FSLARQLSPSVIFIDEVDSLTMKR-----VSLDDAARRMIGTLLAEMDGFKERKDKVIVL 227
F A++ +PS+IFIDE+D++ R +S +D + + LLAEMDGF VIVL
Sbjct: 255 FETAKKQAPSIIFIDEIDAIPKSRAAGGMISGNDEREQTLNQLLAEMDGFGSENAPVIVL 314
Query: 228 TATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAV 283
ATN P LD A++ R ++ V PD N VEI K+ ++G+ DV +AK +
Sbjct: 315 AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVDIKGVKLANDVNFEEVAK--L 372
Query: 284 KRLYSGREIANVVKLATM 301
+G ++AN++ A +
Sbjct: 373 TAGLAGADLANIINEAAL 390
>pir||S51042 tat-binding protein homolog - malaria parasite (Plasmodium
falciparum)
Length = 435
Score = 134 bits (335), Expect = 1e-30
Identities = 91/243 (37%), Positives = 135/243 (55%), Gaps = 17/243 (6%)
Query: 79 DKLKALIKRSTI---TWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFG 128
D L +L+K + T+ +GGL + K + + I L + K P I P+G+LL+G
Sbjct: 162 DPLVSLMKVEKVPDSTYEMVGGLDQQVKEVKEVIELPV-KHPEIFESLGISQPKGVLLYG 220
Query: 129 PPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDE 188
PPGTGK+LLA AVA+ + TF V S+L+ KY GE S+++ LF +AR+ +PS+IF+DE
Sbjct: 221 PPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDE 280
Query: 189 VDSLTMKRVS---LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SR 243
+DS+ +R+ D +R + LL ++DGF E + V+ TN LDEA+L R
Sbjct: 281 IDSIGSQRIEGEHGDSEVQRTMMELLNQLDGF-ESTQNIKVIMCTNRIDILDEALLRPGR 339
Query: 244 LPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKM 303
+ +I P P+V + +EI KIH R I+ + L SG E+ V A M
Sbjct: 340 IDRKIEFPNPNVEARMEILKIHSRKINLMRGIDMLKIATHMNNCSGAEVKAVCTEAGMFA 399
Query: 304 LEE 306
L E
Sbjct: 400 LRE 402
>gb|AAF27916.1|AF220199_1 (AF220199) 26S proteasome regulatory subunit 8 [Pinus taeda]
Length = 433
Score = 134 bits (335), Expect = 1e-30
Identities = 98/283 (34%), Positives = 151/283 (52%), Gaps = 39/283 (13%)
Query: 91 TWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVAN 143
T++ IGGL + K I + I L I K P I P+G+LL+GPPGTGK+LLA AVA+
Sbjct: 173 TYDMIGGLDQQIKEIKEVIELPI-KHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 231
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL---- 199
+ TF V S+L+ KY GE S+++ LF +AR+ +PS+IF+DE+DS+ R+
Sbjct: 232 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGN 291
Query: 200 -DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVN 256
D +R + LL ++DGF E +K+ VL ATN LD+A+L R+ +I P P+
Sbjct: 292 GDSEVQRTMLELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEE 350
Query: 257 SAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDP 314
S +I KIH R ++ + L ++A++ SG E+ V A M L E
Sbjct: 351 SRFDILKIHSRKMNLMRGIDLKKIAEKMSGA--SGAELKAVCTEAGMFALRERRVH---- 404
Query: 315 LRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERW 357
+T +DF+ A+A++ T+ ++ + W
Sbjct: 405 ---------------VTQEDFEMAVAKVMKKETEKNMSLRKLW 432
>dbj|BAB17626.1| (AB033537) 26S proteasome regulatory particle triple-A ATPase
subunit6 [Oryza sativa]
Length = 424
Score = 134 bits (335), Expect = 1e-30
Identities = 98/283 (34%), Positives = 152/283 (53%), Gaps = 39/283 (13%)
Query: 91 TWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVAN 143
T++ IGGL + K I + I L I K P I P+G+LL+GPPGTGK+LLA AVA+
Sbjct: 164 TYDMIGGLDQQIKEIKEVIELPI-KHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 222
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL---- 199
+ TF V S+L+ KY GE S+++ LF +AR+ +PS+IF+DE+DS+ R+
Sbjct: 223 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGN 282
Query: 200 -DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVN 256
D +R + LL ++DGF E +K+ VL ATN LD+A+L R+ +I P P+ +
Sbjct: 283 GDSEVQRTMLELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNED 341
Query: 257 SAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDP 314
S +I KIH R ++ + L ++A++ SG E+ V A M L E
Sbjct: 342 SRFDILKIHSRKMNLMRGIDLKKIAEK--MNGASGAELKAVCTEAGMFALRERRVH---- 395
Query: 315 LRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERW 357
+T +DF+ A+A++ T+ ++ + W
Sbjct: 396 ---------------VTQEDFEMAVAKVMKKDTEKNMSLRKLW 423
>gb|AAB70457.1| (U68140) nuclear VCP-like protein NVLp.2 [Homo sapiens]
Length = 856
Score = 134 bits (334), Expect = 1e-30
Identities = 96/293 (32%), Positives = 152/293 (51%), Gaps = 27/293 (9%)
Query: 80 KLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGT 132
K + + +TW DIG L + ++ + AI L+ ++P + P G+LL GPPG
Sbjct: 568 KREGFVTVPNVTWADIGALEDIREELTMAI-LAPVRNPDQFKALGLVTPAGVLLAGPPGC 626
Query: 133 GKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSL 192
GK+LLA AVAN F SVK +LL+ Y GES + + +F A+ +P VIF DEVD+L
Sbjct: 627 GKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL 686
Query: 193 TMKRVSLDDAAR-RMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
+R + A R++ LL EMDG E + +V ++ ATN P +D A+L RL ++
Sbjct: 687 CPRRSDRETGASVRVVNQLLTEMDGL-EARQQVFIMAATNRPDIIDPAILRPGRLDKTLF 745
Query: 250 VPLPDVNSAVEIFKIHLRG-----IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKML 304
V LP + I K + + DV L +A + Y+G +++ +V+ A++ L
Sbjct: 746 VGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICAL 805
Query: 305 -EEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYER 356
+EM + S G + ++ F+ A +++S I+K D YER
Sbjct: 806 RQEMARQKS---------GNEKGELKVSHKHFEEAFKKVRSSISKKDQIMYER 849
Score = 103 bits (255), Expect = 3e-21
Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 23/234 (9%)
Query: 53 LLEEAKKWEEKAKNV--RKRREGKNEYFDKLKALIKR-----------STITWNDIGG-- 97
LLE K + K KN ++++E E +++A++++ S + + D+GG
Sbjct: 212 LLESDMKRKGKLKNKGSKRKKEDLQEVDGEIEAVLQKKAKARGLEFQISNVKFEDVGGND 271
Query: 98 --LREAKKLIAQAIGLSIAKS-PIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKA 154
L+E K++ + + PP+G+LL GPPG GK+LLA A+A L+ V A
Sbjct: 272 MTLKEVCKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAA 331
Query: 155 SDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDAARRMIGTLLAE 213
+++S GES + + LF A +P +IFIDE+D++T KR V+ D RR++ LL
Sbjct: 332 PEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVAQLLTC 391
Query: 214 MDGFKE--RKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVEIFK 263
MD +V+V+ ATN P LD A+ R I + +PD S I +
Sbjct: 392 MDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQ 445
>gi|4505483 nuclear VCP-like; Nuclear valosin-containing protein-like [Homo
sapiens] >gi|11448052|ref|XP_001975.1| nuclear VCP-like
[Homo sapiens] >gi|2406580|gb|AAB70460.1| (U78772)
nuclear VCP-like protein NVLp.1 [Homo sapiens]
Length = 750
Score = 134 bits (334), Expect = 1e-30
Identities = 96/293 (32%), Positives = 152/293 (51%), Gaps = 27/293 (9%)
Query: 80 KLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGT 132
K + + +TW DIG L + ++ + AI L+ ++P + P G+LL GPPG
Sbjct: 462 KREGFVTVPNVTWADIGALEDIREELTMAI-LAPVRNPDQFKALGLVTPAGVLLAGPPGC 520
Query: 133 GKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSL 192
GK+LLA AVAN F SVK +LL+ Y GES + + +F A+ +P VIF DEVD+L
Sbjct: 521 GKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL 580
Query: 193 TMKRVSLDDAAR-RMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIY 249
+R + A R++ LL EMDG E + +V ++ ATN P +D A+L RL ++
Sbjct: 581 CPRRSDRETGASVRVVNQLLTEMDGL-EARQQVFIMAATNRPDIIDPAILRPGRLDKTLF 639
Query: 250 VPLPDVNSAVEIFKIHLRG-----IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKML 304
V LP + I K + + DV L +A + Y+G +++ +V+ A++ L
Sbjct: 640 VGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICAL 699
Query: 305 -EEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYER 356
+EM + S G + ++ F+ A +++S I+K D YER
Sbjct: 700 RQEMARQKS---------GNEKGELKVSHKHFEEAFKKVRSSISKKDQIMYER 743
Score = 103 bits (255), Expect = 3e-21
Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 23/234 (9%)
Query: 53 LLEEAKKWEEKAKNV--RKRREGKNEYFDKLKALIKR-----------STITWNDIGG-- 97
LLE K + K KN ++++E E +++A++++ S + + D+GG
Sbjct: 106 LLESDMKRKGKLKNKGSKRKKEDLQEVDGEIEAVLQKKAKARGLEFQISNVKFEDVGGND 165
Query: 98 --LREAKKLIAQAIGLSIAKS-PIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKA 154
L+E K++ + + PP+G+LL GPPG GK+LLA A+A L+ V A
Sbjct: 166 MTLKEVCKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAA 225
Query: 155 SDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDAARRMIGTLLAE 213
+++S GES + + LF A +P +IFIDE+D++T KR V+ D RR++ LL
Sbjct: 226 PEIVSGVSGESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVAQLLTC 285
Query: 214 MDGFKE--RKDKVIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVEIFK 263
MD +V+V+ ATN P LD A+ R I + +PD S I +
Sbjct: 286 MDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQ 339
>gb|AAF22526.1|AF123395_1 (AF123395) 26S proteasome AAA-ATPase subunit RPT6a [Arabidopsis
thaliana]
Length = 405
Score = 134 bits (334), Expect = 1e-30
Identities = 98/283 (34%), Positives = 151/283 (52%), Gaps = 39/283 (13%)
Query: 91 TWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVAN 143
T++ IGGL + K I + I L I K P I P+G+LL+GPPGTGK+LLA AVA+
Sbjct: 145 TYDMIGGLDQQIKEIKEVIELPI-KHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 203
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL---- 199
+ TF V S+L+ KY GE S+++ LF +AR+ +PS+IF+DE+DS+ R+
Sbjct: 204 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGN 263
Query: 200 -DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVN 256
D +R + LL ++DGF E +K+ VL ATN LD+A+L R+ +I P P+
Sbjct: 264 GDSEVQRTMLELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEE 322
Query: 257 SAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDP 314
S +I KIH R ++ + L ++A++ SG E+ V A M L E
Sbjct: 323 SRFDILKIHSRKMNLMRGIDLKKIAEK--MNGASGAELKAVCTEAGMFALRERRVH---- 376
Query: 315 LRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERW 357
+T +DF+ A+A++ T+ ++ + W
Sbjct: 377 ---------------VTQEDFEMAVAKVMKKDTEKNMSLRKLW 404
>gi|6323429 homology to the CDC48 gene product; Afg2p [Saccharomyces
cerevisiae] >gi|416590|sp|P32794|AFG2_YEAST AFG2 PROTEIN
>gi|481664|pir||S39110 valosin-containing protein
homolog AFG2 - yeast (Saccharomyces cerevisiae)
>gi|295573|gb|AAC37367.1| (L14615) AFG2 [Saccharomyces
cerevisiae] >gi|625113|gb|AAB82355.1| (U19729) Afg2p
[Saccharomyces cerevisiae]
Length = 780
Score = 134 bits (333), Expect = 2e-30
Identities = 96/281 (34%), Positives = 143/281 (50%), Gaps = 32/281 (11%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSI------AKSPIEPPQGILLFGPPGTGKSLLASAVAN 143
+ W+DIGG E K + + I L + A+ I P+G+LL+GPPG K+L A A+A
Sbjct: 513 VYWSDIGGQEELKTKMKEMIQLPLEASETFARLGISAPKGVLLYGPPGCSKTLTAKALAT 572
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDA 202
F +VK ++ +KY GES + I +F AR +PS+IF DE+D+L+ R S A
Sbjct: 573 ESGINFLAVKGPEIFNKYVGESERAIREIFRKARSAAPSIIFFDEIDALSPDRDGSSTSA 632
Query: 203 ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVE 260
A ++ +LL E+DG +E K V+++ ATN P ++D A+L RL IYV PDVN+ +E
Sbjct: 633 ANHVLTSLLNEIDGVEELKG-VVIVAATNRPDEIDAALLRPGRLDRHIYVGPPDVNARLE 691
Query: 261 IFKIHLRGIHYD---VPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRV 317
I K + + + V L LA YSG E+ + + A + + E
Sbjct: 692 ILKKCTKKFNTEESGVDLHELADRT--EGYSGAEVVLLCQEAGLAAIME----------- 738
Query: 318 STLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWA 358
DL + L F+ A I IT + YE +A
Sbjct: 739 ------DLDVAKVELRHFEKAFKGIARGITPEMLSYYEEFA 773
Score = 116 bits (287), Expect = 5e-25
Identities = 81/270 (30%), Positives = 138/270 (51%), Gaps = 28/270 (10%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVAN 143
+++ +GGL + + + AI + + + + PP+GILL GPPGTGK++L VAN
Sbjct: 242 LSYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVAN 301
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD--D 201
+ NA ++ ++SKY GE+ + +F+ AR+ PS+IFIDE+DS+ R + D +
Sbjct: 302 TSNAHVLTINGPSIVSKYLGETEAALRDIFNEARKYQPSIIFIDEIDSIAPNRANDDSGE 361
Query: 202 AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAV 259
R++ TLL MDG KV+V+ ATN P +D A+ R + + +PDV++
Sbjct: 362 VESRVVATLLTLMDGM-GAAGKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDVDARF 420
Query: 260 EIFKIHLRGIHYDVPLSRLAKEAVKRL------YSGREIANVVKLATMKMLEEMNPELSD 313
+I + D + L EA+K + Y G ++ + + + MK ++
Sbjct: 421 DILTKQFSRMSSDRHV--LDSEAIKYIASKTHGYVGADLTALCRESVMKTIQR------- 471
Query: 314 PLRVSTLKGRDLTTRPLTLDDFKYAMARIK 343
+ T D + +TL D + AM I+
Sbjct: 472 --GLGTDANIDKFSLKVTLKDVESAMVDIR 499
>pir||T49647 MSP1 related protein [imported] - Neurospora crassa
>gi|7801053|emb|CAB91448.1| (AL355933) MSP1 related
protein [Neurospora crassa]
Length = 1104
Score = 134 bits (333), Expect = 2e-30
Identities = 98/265 (36%), Positives = 136/265 (50%), Gaps = 19/265 (7%)
Query: 57 AKKWEEKAKNVRKRREGKNEYFDKLKA-LIKRSTI--TWNDIGGLREAKKLIAQAIGLSI 113
+ W + +++ KL A L+ I T++DI E K+ + LS+
Sbjct: 722 SSSWASSQSQTASDNKDYDQHEKKLLAGLVNAKDIHTTFDDIIVPAETKESLIGLTSLSL 781
Query: 114 AKSPI--------EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGES 165
+ E G LL+GPPGTGK+LLA AVA A V A+ + + G+S
Sbjct: 782 QRPDAFAYGVLKTERIPGCLLYGPPGTGKTLLAKAVAKESGANMLEVSAASINDMWLGQS 841
Query: 166 SKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD--DAARRMIGTLLAEMDGFKERKDK 223
K + ALFSLAR+LSP VIF+DE D+L R + A R I L E DG + +
Sbjct: 842 EKNVRALFSLARKLSPMVIFLDEADALLGARHNNPGRTAHRETITQFLREWDGLSDM--R 899
Query: 224 VIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKE 281
++ ATN P+DLDEA+L RLP +I V LP V +I K+ LR + DV L LAKE
Sbjct: 900 AFIMVATNRPFDLDEAVLRRLPRKILVDLPLVAERAKILKVMLREEQLAPDVDLDALAKE 959
Query: 282 AVKRLYSGREIANVVKLATMKMLEE 306
LYSG ++ N+ A M+ + E
Sbjct: 960 T--DLYSGSDLKNLCVSAAMEAVRE 982
>gb|AAK42941.1| AAA family ATPase [Sulfolobus solfataricus]
Length = 585
Score = 133 bits (332), Expect = 3e-30
Identities = 92/294 (31%), Positives = 157/294 (53%), Gaps = 28/294 (9%)
Query: 78 FDKLKALIKR---STITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFG 128
+++ K +IK I+WND+G L E K++I ++I L I K I P +GILL+G
Sbjct: 307 YERSKLIIKTYGIPNISWNDLGDLEEVKRIIRESIVLPITNKEFAEKLGIYPVKGILLYG 366
Query: 129 PPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDE 188
PPGTGK+ +A A+AN L F + ++ ++ K+I+ F +A +P++IFIDE
Sbjct: 367 PPGTGKTSIAKALANDLRFNFIELSGEEVSGAGPLDAPKIIAEKFYIALDNAPAIIFIDE 426
Query: 189 VDSLTMKRVSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPI 246
+D + R++ + R + LL +MDG +E + VIV+ ATN PWDLD A+L R
Sbjct: 427 IDMIARNRMT--NEWRNALTELLRQMDGLREIHN-VIVVGATNRPWDLDPAILRAGRFDK 483
Query: 247 RIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE 306
IYVP PD + +I ++ ++ + + + E + Y+ ++ VV+ +L+E
Sbjct: 484 IIYVPPPDKDGREKILQVLIKDLIINRNIISKVAELTEN-YTPADLKLVVEEVKRNLLKE 542
Query: 307 MNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKE 360
+ +S LR + L+DF + R+K+ + + + YE++ E
Sbjct: 543 AS--ISGNLRTE-----------VKLEDFMDVLKRVKASLDRQTLIMYEKFGFE 583
Score = 129 bits (322), Expect = 4e-29
Identities = 91/284 (32%), Positives = 147/284 (51%), Gaps = 37/284 (13%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEP-PQGILLFGPPGTGKSLLASA 140
K I I W+++ L++ K + + IAK E G++LFGPPGTGK+ +A A
Sbjct: 57 KPKIHIPNIRWDEVYDLKDVKMRLEE-----IAKIVQEGRAYGVILFGPPGTGKTTIAKA 111
Query: 141 VANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS-L 199
+AN L +F ++ S +LSK++GES L+ + F +P+V+FIDE+DSL M R S L
Sbjct: 112 LANKLGWAYFELRPSKILSKWYGESELLLDSFFDQVEINTPAVVFIDELDSLAMSRQSDL 171
Query: 200 DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNS 257
+ R++ +L + ++ +VI++ ATN P ++DEA L R IYV LPD S
Sbjct: 172 HEVTHRLVNIMLMRLQDLHDKNLRVIIIGATNVPQEIDEAFLRPGRFDEVIYVALPDEKS 231
Query: 258 AVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRV 317
EI+K +++ D+ S LAK++ + +S +I NV K++ + N
Sbjct: 232 REEIWKGYIK--REDIDYSLLAKKSER--FSPADIKNVAD----KVISKNN--------- 274
Query: 318 STLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
L +DF + K I S + K+E A+++
Sbjct: 275 -----------SLKTEDFLREIENYKPSIQLSTIIKFENIARKY 307
>gb|AAF53216.1| (AE003637) CG5776 gene product [Drosophila melanogaster]
Length = 799
Score = 133 bits (332), Expect = 3e-30
Identities = 84/241 (34%), Positives = 134/241 (54%), Gaps = 19/241 (7%)
Query: 82 KALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKS 135
+ LI+ + W+DIGG E + + QAI + + I+PP+GIL+FGPPG K+
Sbjct: 524 EVLIECPNVQWSDIGGQSELRLAMQQAIEWPLLHADKFQRLGIKPPRGILMFGPPGCSKT 583
Query: 136 LLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK 195
++A A+A F S+K +L S + GES + + +F ARQ++P+++F DE+D++ +
Sbjct: 584 MIAKALATESKLNFLSIKGPELFSMWVGESERAVREVFRKARQVAPAIVFFDEIDAIGGE 643
Query: 196 RVSLDDAA------RRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIR 247
R D ++ R++ LL E+DG E V ++ ATN P +D+A+L R+
Sbjct: 644 RSEGDGSSSGSSVKERVLTQLLTELDGV-EALQNVTIVAATNRPDMIDKALLRPGRIDRI 702
Query: 248 IYVPLPDVNSAVEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLE 305
+YV LP + EI KI LR I DV + +L + + YSG EI V A ++ LE
Sbjct: 703 LYVGLPQCEARREILKIKLRAMPISNDVDMEKLVQ--LTEGYSGAEIQAVCHEAALRALE 760
Query: 306 E 306
+
Sbjct: 761 Q 761
>gb|AAF58864.1| (AE003831) TER94 gene product [alt 1] [Drosophila melanogaster]
Length = 297
Score = 133 bits (331), Expect = 3e-30
Identities = 90/257 (35%), Positives = 140/257 (54%), Gaps = 18/257 (7%)
Query: 118 IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLAR 177
++P +G+L +GPPG GK+LLA A+AN A F SVK +LL+ +FGES + +F AR
Sbjct: 1 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 60
Query: 178 QLSPSVIFIDEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAP 233
+P V+F DE+DS+ R AA R+I +L EMDG +K+ V ++ ATN P
Sbjct: 61 SAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTEMDGMGAKKN-VFIIGATNRP 119
Query: 234 WDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSG 289
+D A+L RL IY+PLPD S I K +LR + +V L+ +AK V + +SG
Sbjct: 120 DIIDPAILRPGRLDQLIYIPLPDDKSREAILKANLRKSPLAKEVDLTYIAK--VTQGFSG 177
Query: 290 REIANV----VKLATMKMLE---EMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARI 342
++ + KLA + +E E ++ + D +T F+ AM
Sbjct: 178 ADLTEICQRACKLAIRQAIEAEIRREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFA 237
Query: 343 KSPITKSDVKKYERWAK 359
+ ++ +D++KYE +A+
Sbjct: 238 RRSVSDNDIRKYEMFAQ 254
>sp|Q9ZEA2|FTSH_RICPR CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446570|pir||C71712 cell
division protein ftsH (ftsH) RP043 - Rickettsia
prowazekii >gi|3860613|emb|CAA14514.1| (AJ235270) CELL
DIVISION PROTEIN FTSH (ftsH) [Rickettsia prowazekii]
Length = 637
Score = 132 bits (330), Expect = 4e-30
Identities = 85/244 (34%), Positives = 133/244 (53%), Gaps = 17/244 (6%)
Query: 73 GKNEYFDKLKALI---KRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEP-----PQGI 124
GK F K KA + K IT+ D+ G+ EAK+ + + + S + P+G
Sbjct: 132 GKAMGFGKSKARLLSDKGPKITFKDVAGIDEAKEELTEIVDFLRDPSKFQKLGGKIPKGC 191
Query: 125 LLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVI 184
LL GPPGTGK+LLA A+A N FFS+ SD + + G + + +F ++ +P +I
Sbjct: 192 LLIGPPGTGKTLLAKAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFEQGKRNAPCII 251
Query: 185 FIDEVDSLTMKR-VSL---DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM 240
FIDE+D++ R + + +D + + +L EMDGF E + V+++ ATN P LD A+
Sbjct: 252 FIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGF-EANEGVVIIAATNRPDVLDRAL 310
Query: 241 L--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYD-VPLSRLAKEAVKRLYSGREIANVVK 297
L R +I V PD+N +I K+HL+ I Y+ L+R+ +SG E+AN+V
Sbjct: 311 LRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPG-FSGAELANLVN 369
Query: 298 LATM 301
A +
Sbjct: 370 EAAL 373
>gi|8922407 fidgetin; fidgetin; hypothetical protein FLJ10405 [Homo sapiens]
>gi|7022415|dbj|BAA91590.1| (AK001267) unnamed protein
product [Homo sapiens]
Length = 639
Score = 132 bits (330), Expect = 4e-30
Identities = 89/281 (31%), Positives = 148/281 (51%), Gaps = 17/281 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSPIEP-----PQGILLFGPPGTGKSLLASAVANS 144
+ WNDI GL K +I + + + +S P+ ILLFGP GTGK+LL +A+
Sbjct: 363 VDWNDIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQ 422
Query: 145 LNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDA-A 203
L ATFF + S L++K+ GE+ K+I A F +AR PSVIF+ ++D L +V+ + +
Sbjct: 423 LGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPV 482
Query: 204 RRMIGTLLAEMDG-FKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIF 262
RM L ++D +D+++V+ AT+ P ++DE++ R+ +PLPD + +I
Sbjct: 483 SRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIPLPDSTARHQII 542
Query: 263 KIHLRGIHYDVPLSRLAKEAVKRL--YSGREIANVVKLATMKMLEEMNPELSDPLRVSTL 320
L +Y + A V+R +SG ++A++ + A + L M + S L
Sbjct: 543 VQLLSQHNYCLNDKEFAL-LVQRTEGFSGLDVAHLCQEAVVGPLHAMPATDLSAIMPSQL 601
Query: 321 KGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
RP+T DF+ A +I+ I++ ++ Y W K F
Sbjct: 602 -------RPVTYQDFENAFCKIQPSISQKELDMYVEWNKMF 635
>gb|AAF52903.1| (AE003628) CG5395 gene product [Drosophila melanogaster]
Length = 369
Score = 132 bits (330), Expect = 4e-30
Identities = 93/314 (29%), Positives = 161/314 (50%), Gaps = 21/314 (6%)
Query: 44 SENLSLSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLKALI---KRSTITWNDIGGLRE 100
S+N + +L EE K + + + R + ++Y + + + T++W DI GL
Sbjct: 45 SKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIAGLDS 104
Query: 101 AKKLIAQAIGLSIAKSPI-------EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVK 153
+ + +++ L I + + P+G+LL GPPG GK+L+A A A F ++
Sbjct: 105 VIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLD 164
Query: 154 ASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAARRMIGT-LLA 212
+ L K++GES KL SA+FSLA ++ P +IFIDE+DS R D A M+ T +
Sbjct: 165 VAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAMMKTQFMM 224
Query: 213 EMDGFKERKDK-VIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRG--I 269
DG + VIV+ ATN P DLD+A++ R+P + ++ LP +I K+ L+ +
Sbjct: 225 LWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEV 284
Query: 270 HYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRP 329
DV L+RL+K + +SG ++ + + A++ + ++ R + D
Sbjct: 285 SQDVDLNRLSK--LTNGFSGSDLREMCRNASVYRMRQLITS-----RDPSATALDRNNVR 337
Query: 330 LTLDDFKYAMARIK 343
+T+DD + +IK
Sbjct: 338 ITMDDLLGSHLKIK 351
>gi|11428694 fidgetin; hypothetical protein FLJ10405 [Homo sapiens]
Length = 693
Score = 132 bits (330), Expect = 4e-30
Identities = 89/281 (31%), Positives = 148/281 (51%), Gaps = 17/281 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSPIEP-----PQGILLFGPPGTGKSLLASAVANS 144
+ WNDI GL K +I + + + +S P+ ILLFGP GTGK+LL +A+
Sbjct: 417 VDWNDIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQ 476
Query: 145 LNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDA-A 203
L ATFF + S L++K+ GE+ K+I A F +AR PSVIF+ ++D L +V+ + +
Sbjct: 477 LGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPV 536
Query: 204 RRMIGTLLAEMDG-FKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIF 262
RM L ++D +D+++V+ AT+ P ++DE++ R+ +PLPD + +I
Sbjct: 537 SRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIPLPDSTARHQII 596
Query: 263 KIHLRGIHYDVPLSRLAKEAVKRL--YSGREIANVVKLATMKMLEEMNPELSDPLRVSTL 320
L +Y + A V+R +SG ++A++ + A + L M + S L
Sbjct: 597 VQLLSQHNYCLNDKEFAL-LVQRTEGFSGLDVAHLCQEAVVGPLHAMPATDLSAIMPSQL 655
Query: 321 KGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
RP+T DF+ A +I+ I++ ++ Y W K F
Sbjct: 656 -------RPVTYQDFENAFCKIQPSISQKELDMYVEWNKMF 689
>sp|O14126|PRSA_SCHPO 26S PROTEASE REGULATORY SUBUNIT 6A >gi|7435746|pir||T11634 26S
proteasome regulatory particle chain RPT5 - fission
yeast (Schizosaccharomyces pombe)
>gi|2414640|emb|CAB16387.1| (Z99260) probable 26s
protease regulatory subunit 6a. [Schizosaccharomyces
pombe] >gi|6681372|dbj|BAA88693.1| (AB012136) regulatory
subunit of 26S proteasome [Schizosaccharomyces pombe]
Length = 438
Score = 132 bits (328), Expect = 8e-30
Identities = 89/254 (35%), Positives = 147/254 (57%), Gaps = 19/254 (7%)
Query: 75 NEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILL 126
+EY ++KA+ ++ T ++DIGGL + + + +AI L + ++ ++PP+G L+
Sbjct: 165 SEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLM 224
Query: 127 FGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFI 186
FGPPGTGK+LLA A A NATF + A L+ + G+ +KL+ F+LA++ SP++IFI
Sbjct: 225 FGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFI 284
Query: 187 DEVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
DE+D++ KR + A +R + LL ++DGF D+V V+ ATN LD A+L
Sbjct: 285 DELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS-DDRVKVIAATNRVDTLDPALLR 343
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKL 298
RL ++ PLP+ + V I +IH R I D+ LA+ + Y+G + +V
Sbjct: 344 SGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDE--YNGAMLKSVCVE 401
Query: 299 ATMKMLEEMNPELS 312
A M L + + +++
Sbjct: 402 AGMIALRQGDTKIN 415
>gi|11181772 fidgetin; fidget [Mus musculus]
>gi|10442027|gb|AAG17289.1|AF263913_1 (AF263913)
fidgetin [Mus musculus]
Length = 759
Score = 132 bits (328), Expect = 8e-30
Identities = 89/281 (31%), Positives = 148/281 (51%), Gaps = 17/281 (6%)
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSPIEP-----PQGILLFGPPGTGKSLLASAVANS 144
+ W+DI GL K +I + + + +S P+ ILLFGP GTGK+LL +A+
Sbjct: 483 VDWSDIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQ 542
Query: 145 LNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDA-A 203
L ATFF + S L++K+ GE+ K+I A F +AR PSVIF+ ++D L +VS + +
Sbjct: 543 LGATFFKIAGSGLVAKWIGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVSEEHSPV 602
Query: 204 RRMIGTLLAEMDG-FKERKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIF 262
RM L ++D +D+++V+ AT+ P ++DE++ R+ +PLPD + +I
Sbjct: 603 SRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIPLPDSTARHQII 662
Query: 263 KIHLRGIHYDVPLSRLAKEAVKRL--YSGREIANVVKLATMKMLEEMNPELSDPLRVSTL 320
L +Y + A V+R +SG ++A++ + A + L M + S L
Sbjct: 663 VQLLTQHNYCLNDKEFAL-LVQRTEGFSGLDVAHLCQEAAVGPLHAMPATDLSAIMPSQL 721
Query: 321 KGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
RP+T DF+ A +I+ I++ ++ Y W K F
Sbjct: 722 -------RPVTYQDFENAFCKIQPSISQKELDMYVEWNKMF 755
>emb|CAB62856.1| (AL035475) hypothetical protein MAL4P2.15 [Plasmodium falciparum]
Length = 667
Score = 131 bits (326), Expect = 1e-29
Identities = 90/278 (32%), Positives = 147/278 (52%), Gaps = 17/278 (6%)
Query: 93 NDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLASAVANSLNA 147
+DI GL + KK+I I I + + +GILLFGPPGTGK+++A VA+S
Sbjct: 391 SDIIGLYDIKKIIKDKIVNVILRPDLFTGLNRAAKGILLFGPPGTGKTMVAKWVASSCKC 450
Query: 148 TFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLT-MKRVSLDDAARRM 206
+F++V S L SKY GE+ K+++ALF A +PS++F DE+DSL ++ DD R+
Sbjct: 451 SFYNVNTSSLFSKYIGETEKIVTALFKCAEVDNPSILFFDEIDSLLGTRKKDEDDTTIRI 510
Query: 207 IGTLLAEMDGFKERKDKVIVLT-ATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVE-IFKI 264
LL +DG +KD +IV+ ATN P +D+A L R R+Y+PLPD N+ E I I
Sbjct: 511 KNQLLQMIDGINTKKDIIIVIIGATNRPDMIDDAALRRFNKRVYIPLPDFNARKEQIRYI 570
Query: 265 HLRGIHYDVPLSRLAKEAVK---RLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLK 321
+ H L+ +A+ ++G +I ++ + ++ + + +
Sbjct: 571 ISKHTHSGFQLTEEELDAISVKLENWNGSDIYHLCSKCYEYVYDDAVEQYNGIQNIPNAS 630
Query: 322 GRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAK 359
R + +DF AM ++ + + +V Y+ W+K
Sbjct: 631 ----IFRAIQFNDFIKAMTQVNT--SYKNVFDYDEWSK 662
>gb|AAF01545.1|AC009325_15 (AC009325) putative cell division control protein [Arabidopsis
thaliana]
Length = 703
Score = 130 bits (324), Expect = 2e-29
Identities = 103/326 (31%), Positives = 157/326 (47%), Gaps = 34/326 (10%)
Query: 55 EEAKKW------EEKAKNVRKRREGKNEYFDKLKALIKRS------TITWNDIGGLREAK 102
E+ K W EE+ + + + E + ++A + R + W+D+GGL +
Sbjct: 361 EDDKSWLRMPWPEEELEKLFVKMSDFEEAVNLVQASLTREGFSIVPDVKWDDVGGLDHLR 420
Query: 103 KLIAQAIGLSIAKSPI------EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASD 156
+ I I K I + G LL+GPPG GK+L+A A AN A F +K ++
Sbjct: 421 LQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAE 480
Query: 157 LLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDD-AARRMIGTLLAEMD 215
LL+KY GES I LF AR +P VIF DEVD+LT R R++ L E+D
Sbjct: 481 LLNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELD 540
Query: 216 GFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHY 271
G + R V V+ ATN P +D A L R +YVPLP+ + I K R I
Sbjct: 541 GGERR--NVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDP 598
Query: 272 DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM--NPELSDPLRVSTLKGRDLTTRP 329
V L +AK + +SG ++A++V+ AT + +EEM + E S+ D+T
Sbjct: 599 SVDLDGIAKNNCEG-FSGADLAHLVQKATFQAVEEMIGSSESSED------DVTDITQCT 651
Query: 330 LTLDDFKYAMARIKSPITKSDVKKYE 355
+ F+ A++ + + K + Y+
Sbjct: 652 IKTRHFEQALSLVSPSVNKQQRRHYD 677
Score = 107 bits (265), Expect = 2e-22
Identities = 70/235 (29%), Positives = 120/235 (50%), Gaps = 18/235 (7%)
Query: 91 TWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVANS 144
T+ D GG+++ + + I K ++PP GIL GPPG GK+ LA+A+AN
Sbjct: 114 TFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANE 173
Query: 145 LNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DAA 203
F+ + A++++S G S + I LFS A + +PS++FIDE+D++ KR + +
Sbjct: 174 AGVPFYKISATEVISGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREME 233
Query: 204 RRMIGTLLAEMDGFKERKDK---------VIVLTATNAPWDLDEAM--LSRLPIRIYVPL 252
+R++ LL MDG + DK V+V+ ATN P LD A+ R I +
Sbjct: 234 KRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTA 293
Query: 253 PDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM 307
PD ++ EI + + + + P + + + G ++ +V LA K ++ +
Sbjct: 294 PDEDARAEILSVVAQKLRLEGPFDKKRIARLTPGFVGADLESVAYLAGRKAIKRI 348
>sp|P54777|PEX6_RAT PEROXISOME ASSEMBLY FACTOR-2 (PAF-2) (PEROXISOMAL-TYPE ATPASE 1)
(PEROXIN-6) >gi|1127034|dbj|BAA09824.1| (D63673)
peroxisome assembly factor-2 [Rattus norvegicus]
>gi|1586820|prf||2204387A peroxisome assembly factor 2
[Rattus norvegicus]
Length = 978
Score = 130 bits (323), Expect = 3e-29
Identities = 92/293 (31%), Positives = 154/293 (52%), Gaps = 28/293 (9%)
Query: 86 KRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEPPQ---------GILLFGPPGTGKSL 136
K +++W+D+GGL++ KK I + I L P+E P+ G+LL GPPGTGK+L
Sbjct: 696 KIPSVSWHDVGGLQDVKKEILETIQL-----PLEHPELLSLGLRRSGLLLHGPPGTGKTL 750
Query: 137 LASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR 196
LA AVA + TF SVK +L++ Y G+S + + +F+ AR +P +IF DE+DSL R
Sbjct: 751 LAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSR 810
Query: 197 VSLDDAA---RRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYV- 250
D+ R++ LLAE+DG +D V V+ ATN P LD A+L R ++V
Sbjct: 811 GRSGDSGGVMDRVVSQLLAELDGLHSTQD-VFVIGATNRPDLLDPALLRPGRFDKLVFVG 869
Query: 251 PLPDVNSAVEIFKIHLRGIHYDVPLSRL-AKEAVKRLYSGREIANVVKLATMKMLEEMNP 309
D S + + R + +S + + +G ++ ++ A M L+
Sbjct: 870 ASEDRASQLRVLSAITRKFKLEASVSLMNVLDCCPPQLTGADLYSLCSDAMMTALKRRVR 929
Query: 310 ELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFA 362
+L + L + + LT++D A AR++ +++ ++ +Y+R ++FA
Sbjct: 930 DLEEGLEPRS------SALLLTMEDLLQAAARLQPSVSEQELLRYKRIQRKFA 976
>dbj|BAA24931.1| (D89660) peroxisome assembly factor-2 [Rattus norvegicus]
Length = 978
Score = 130 bits (323), Expect = 3e-29
Identities = 92/293 (31%), Positives = 154/293 (52%), Gaps = 28/293 (9%)
Query: 86 KRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEPPQ---------GILLFGPPGTGKSL 136
K +++W+D+GGL++ KK I + I L P+E P+ G+LL GPPGTGK+L
Sbjct: 696 KIPSVSWHDVGGLQDVKKEILETIQL-----PLEHPELLSLGLRRSGLLLHGPPGTGKTL 750
Query: 137 LASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKR 196
LA AVA + TF SVK +L++ Y G+S + + +F+ AR +P +IF DE+DSL R
Sbjct: 751 LAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSR 810
Query: 197 VSLDDAA---RRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYV- 250
D+ R++ LLAE+DG +D V V+ ATN P LD A+L R ++V
Sbjct: 811 GRSGDSGGVMDRVVSQLLAELDGLHSTQD-VFVIGATNRPDLLDPALLRPGRFDKLVFVG 869
Query: 251 PLPDVNSAVEIFKIHLRGIHYDVPLSRL-AKEAVKRLYSGREIANVVKLATMKMLEEMNP 309
D S + + R + +S + + +G ++ ++ A M L+
Sbjct: 870 ASEDRASQLRVLSAITRKFKLEASVSLMNVLDCCPPQLTGADLYSLCSDAMMTALKRRVR 929
Query: 310 ELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFA 362
+L + L + + LT++D A AR++ +++ ++ +Y+R ++FA
Sbjct: 930 DLEEGLEPRS------SALLLTMEDLLQAAARLQPSVSEQELLRYKRIQRKFA 976
>gb|AAG09749.1|AF233277_1 (AF233277) peroxin-6 [Penicillium chrysogenum]
Length = 1459
Score = 130 bits (323), Expect = 3e-29
Identities = 107/364 (29%), Positives = 177/364 (48%), Gaps = 34/364 (9%)
Query: 28 ARLIALRCAELLRKIASENLSLSHILLE--EAKKWEEKAKNVRKRREGKNEYFDKLKALI 85
ARL +L AE +KI+ + + +LL + + KA + + D + A
Sbjct: 966 ARLESL--AEASKKISGSEVFVRDVLLAGGDGARGVTKADFDAAVEAARKNFADSIGAP- 1022
Query: 86 KRSTITWNDIGGLREAKKLIAQAIGLSIAKSPI-----EPPQGILLFGPPGTGKSLLASA 140
K + W+D+GGL K + + I L + + + + GIL +GPPGTGK+LLA A
Sbjct: 1023 KIPNVGWDDVGGLTNVKDALVETIQLPLERPELFAKGMKKRSGILFYGPPGTGKTLLAKA 1082
Query: 141 VANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD 200
+A + FFSVK +LL+ Y GES + +F AR P V+F DE+DS+ KR +
Sbjct: 1083 IATEFSLNFFSVKGPELLNMYIGESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQG 1142
Query: 201 DAA---RRMIGTLLAEMDGF---KERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPL 252
D+ R++ LLAE+DG +E V V+ ATN P LD A+L R +Y+ +
Sbjct: 1143 DSGGVMDRIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGV 1202
Query: 253 PDVN-SAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKML----- 304
D + I + R +H DV L R+A E + Y+G ++ + A +K +
Sbjct: 1203 SDTHRKQATILEALTRKFALHPDVSLDRVA-EQLPLTYTGADLYALCSDAMLKAITRKAT 1261
Query: 305 ---EEMNPELSDPLRVS----TLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERW 357
E++N + P+ + L ++ +T +DF A + ++ +++ +ER
Sbjct: 1262 AVDEKINALPNGPVSTAWFFDHLATKEDVNVMVTEEDFLSAQGELVPSVSAKELEHFERI 1321
Query: 358 AKEF 361
+ F
Sbjct: 1322 RQTF 1325
>gi|6324691 26S protease regulatory subunit; Rpt5p [Saccharomyces cerevisiae]
>gi|464859|sp|P33297|PRSA_YEAST 26S PROTEASE REGULATORY
SUBUNIT 6A (TAT-BINDING PROTEIN HOMOLOG 1) (TBP-1)
>gi|626983|pir||S46605 26S proteasome regulatory
particle chain RPT5 - yeast (Saccharomyces cerevisiae)
>gi|313878|emb|CAA51971.1| (X73569) yeast tat-binding
analog [Saccharomyces cerevisiae]
>gi|1050819|emb|CAA62114.1| (X90518) ORF O3258
[Saccharomyces cerevisiae] >gi|1164962|emb|CAA64037.1|
(X94335) YOR3258w [Saccharomyces cerevisiae]
>gi|1420311|emb|CAA99315.1| (Z75025) ORF YOR117w
[Saccharomyces cerevisiae]
Length = 434
Score = 129 bits (322), Expect = 4e-29
Identities = 82/212 (38%), Positives = 127/212 (59%), Gaps = 15/212 (7%)
Query: 75 NEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILL 126
+E+ ++KA+ ++ T T++D+GGL + + + +AI L + ++ I P+G L+
Sbjct: 161 SEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALM 220
Query: 127 FGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFI 186
+GPPGTGK+LLA A A NATF + A L+ Y GE +KL+ F+LA++ +P++IFI
Sbjct: 221 YGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFI 280
Query: 187 DEVDSLTMKRV----SLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
DE+D++ KR S D +R + LL ++DGF D+V VL ATN LD A+L
Sbjct: 281 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS-DDRVKVLAATNRVDVLDPALLR 339
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYD 272
RL +I PLP +S +I +IH R + D
Sbjct: 340 SGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD 371
>sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|2564337|dbj|BAA22951.1| (D88663)
Tat binding protein 1 [Brassica rapa]
Length = 424
Score = 129 bits (322), Expect = 4e-29
Identities = 81/222 (36%), Positives = 127/222 (56%), Gaps = 17/222 (7%)
Query: 75 NEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILL 126
+EY ++KA+ ++ T +NDIGGL + + + +AI L + K + PP+G+LL
Sbjct: 151 SEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLL 210
Query: 127 FGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFI 186
+GPPGTGK+L+A A A NATF + L+ + G+ +KL+ F LA++ +P +IFI
Sbjct: 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFI 270
Query: 187 DEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
DE+D++ KR VS D +R + LL ++DGF +++ V+ ATN LD A++
Sbjct: 271 DEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-DERIKVIAATNRADILDPALMR 329
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P P + I +IH R +H DV LA+
Sbjct: 330 SGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELAR 371
>sp|O67077|FTSH_AQUAE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|7446574|pir||B70381 cell
division protein FtsH - Aquifex aeolicus
>gi|2983448|gb|AAC07029.1| (AE000714) cell division
protein FtsH [Aquifex aeolicus]
Length = 634
Score = 129 bits (322), Expect = 4e-29
Identities = 85/256 (33%), Positives = 137/256 (53%), Gaps = 28/256 (10%)
Query: 78 FDKLKALI---KRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIE-------PPQGILLF 127
F K +A + ++ +T+ D+ G+ E K+ + + I K P++ PP+G+LL+
Sbjct: 137 FGKSRAKVYIEEKPKVTFKDVAGIEEVKEEVKEII--EYLKDPVKFQKLGGRPPKGVLLY 194
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
G PG GK+LLA A+A + F SV SD + + G + + LF A++ +P +IFID
Sbjct: 195 GEPGVGKTLLAKAIAGEAHVPFISVSGSDFVEMFVGVGAARVRDLFETAKKHAPCIIFID 254
Query: 188 EVDSLTMKRVSL-----DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
E+D++ R ++ D + + LL EMDGF + D +IV+ ATN P LD A+L
Sbjct: 255 EIDAVGRARGAIPVGGGHDEREQTLNQLLVEMDGF-DTSDGIIVIAATNRPDILDPALLR 313
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIANVVK- 297
R +I++P PDV EI K+H R + DV L +A+ ++G ++ N++
Sbjct: 314 PGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPG--FTGADLENLLNE 371
Query: 298 ---LATMKMLEEMNPE 310
LA K EE+ E
Sbjct: 372 AALLAARKGKEEITME 387
>gb|AAD46145.1| (AF081573) 19S proteasome regulatory complex subunit S6A
[Arabidopsis thaliana]
Length = 424
Score = 129 bits (322), Expect = 4e-29
Identities = 81/222 (36%), Positives = 127/222 (56%), Gaps = 17/222 (7%)
Query: 75 NEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILL 126
+EY ++KA+ ++ T +NDIGGL + + + +AI L + K + PP+G+LL
Sbjct: 151 SEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLL 210
Query: 127 FGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFI 186
+GPPGTGK+L+A A A NATF + L+ + G+ +KL+ F LA++ +P +IFI
Sbjct: 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFI 270
Query: 187 DEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
DE+D++ KR VS D +R + LL ++DGF +++ V+ ATN LD A++
Sbjct: 271 DEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-DERIKVIAATNRADILDPALMR 329
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P P + I +IH R +H DV LA+
Sbjct: 330 SGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVHFEELAR 371
>gb|AAF22525.1|AF123394_1 (AF123394) 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis
thaliana] >gi|7596759|gb|AAF64530.1| (AC009606) 26S
proteasome AAA-ATPase subunit RPT5a [Arabidopsis
thaliana]
Length = 424
Score = 129 bits (322), Expect = 4e-29
Identities = 81/222 (36%), Positives = 127/222 (56%), Gaps = 17/222 (7%)
Query: 75 NEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILL 126
+EY ++KA+ ++ T +NDIGGL + + + +AI L + K + PP+G+LL
Sbjct: 151 SEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLL 210
Query: 127 FGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFI 186
+GPPGTGK+L+A A A NATF + L+ + G+ +KL+ F LA++ +P +IFI
Sbjct: 211 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFI 270
Query: 187 DEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
DE+D++ KR VS D +R + LL ++DGF +++ V+ ATN LD A++
Sbjct: 271 DEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-DERIKVIAATNRADILDPALMR 329
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P P + I +IH R +H DV LA+
Sbjct: 330 SGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELAR 371
>sp|P46465|PRSA_ORYSA 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|556560|dbj|BAA04614.1| (D17788)
rice homologue of Tat binding protein [Oryza sativa]
Length = 429
Score = 129 bits (320), Expect = 7e-29
Identities = 82/222 (36%), Positives = 127/222 (56%), Gaps = 17/222 (7%)
Query: 75 NEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILL 126
+EY ++KA+ ++ T +NDIGGL + + + +AI L + K I PP+G+LL
Sbjct: 156 SEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLL 215
Query: 127 FGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFI 186
+GPPGTGK+L+A A A NATF + L+ + G+ +KL+ F LA++ SP +IFI
Sbjct: 216 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFI 275
Query: 187 DEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
DE+D++ KR VS D +R + LL ++DGF +++ V+ ATN LD A++
Sbjct: 276 DEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-DERIKVIAATNRADILDPALMR 334
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P P + I +IH R ++ DV LA+
Sbjct: 335 SGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELAR 376
>sp|O13764|PEX6_SCHPO PROBABLE PEROXIN-6 >gi|7492793|pir||T37816 probable peroxin-6, AAA
family atpase - fission yeast (Schizosaccharomyces
pombe) >gi|2370473|emb|CAB11501.1| (Z98849) putative
peroxin-6, AAA family atpase [Schizosaccharomyces pombe]
Length = 948
Score = 129 bits (320), Expect = 7e-29
Identities = 97/326 (29%), Positives = 161/326 (48%), Gaps = 45/326 (13%)
Query: 68 RKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIA-----KSPIEPPQ 122
R R+E N F K + W+DIGGL EAK ++ + L + ++P
Sbjct: 637 RIRKEKSNTIFTVPK-------VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQGLKPRS 689
Query: 123 GILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPS 182
G+LL+GPPGTGK+LLA AVA L+ F S+K +LL+ Y GES + +F AR SP
Sbjct: 690 GVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPC 749
Query: 183 VIFIDEVDSLTMKRVSLDDAAR---RMIGTLLAEMDGFKERKDK-VIVLTATNAPWDLDE 238
VIF DE+DS+ R + D+ R++ LLAE+D + +K V V+ ATN P LD
Sbjct: 750 VIFFDELDSIAPHRGNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDP 809
Query: 239 AML--SRLPIRIYVPLPDVNSAVEIFKIHLRG------IHYDVPLSRLAKEAVKRLYSGR 290
++L R +Y+ +N + E LR + + L+ +AK ++G
Sbjct: 810 SLLRPGRFDKLVYL---GINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPN-FTGA 865
Query: 291 EIANVVKLATMKMLEEMNPELSDPLRVSTLKGRDLTTRP--------------LTLDDFK 336
++ + A + ++ E+ ++ S G DL+T +T +DF
Sbjct: 866 DMYALCSDAVLSAIKRKTNEIDLLIQAS---GTDLSTEEFFKRNENQDSLELRITKEDFL 922
Query: 337 YAMARIKSPITKSDVKKYERWAKEFA 362
++ +++ I++ ++ +YE +F+
Sbjct: 923 TSLKKLRPSISEQELHRYEMVRHQFS 948
>sp|O04019|PRSA_ARATH 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) >gi|2342675|gb|AAB70397.1| (AC000106)
Similar to probable Mg-dependent ATPase (pir|S56671).
ESTs gb|T46782,gb|AA04798 come from this gene.
[Arabidopsis thaliana]
Length = 419
Score = 128 bits (319), Expect = 9e-29
Identities = 83/222 (37%), Positives = 127/222 (56%), Gaps = 17/222 (7%)
Query: 75 NEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILL 126
+EY ++KA+ ++ T +NDIGGL + + + +AI L + K I PP+G+LL
Sbjct: 146 SEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLL 205
Query: 127 FGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFI 186
+GPPGTGK+L+A A A NATF + L+ + G+ +KL+ F LA++ SP +IFI
Sbjct: 206 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFI 265
Query: 187 DEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
DE+D++ KR VS D +R + LL ++DGF D++ V+ ATN LD A++
Sbjct: 266 DEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-DDRIKVIAATNRADILDPALMR 324
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P P + I +IH R ++ DV LA+
Sbjct: 325 SGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELAR 366
>gi|6321465 40 kDa putative membrane-spanning ATPase; Msp1p [Saccharomyces
cerevisiae] >gi|462627|sp|P28737|MSP1_YEAST MSP1 PROTEIN
(TAT-BINDING HOMOLOG 4) >gi|1362427|pir||A49506 MSP1
protein - yeast (Saccharomyces cerevisiae)
>gi|404217|emb|CAA48191.1| (X68055) MSP1 protein
[Saccharomyces cerevisiae] >gi|531756|emb|CAA56956.1|
(X81069) probable regulatory subunit of 26S protease
[Saccharomyces cerevisiae] >gi|1323004|emb|CAA97015.1|
(Z72813) ORF YGR028w [Saccharomyces cerevisiae]
Length = 362
Score = 128 bits (318), Expect = 1e-28
Identities = 92/302 (30%), Positives = 154/302 (50%), Gaps = 27/302 (8%)
Query: 55 EEAKKWEEKAKNVRKRREGKNEYFDK--LKALIKRS--TITWNDIGGLREAKKLIAQAIG 110
+++ +WE+ K E + +++ L +++ IT+ DIGGL + +++
Sbjct: 49 KQSLQWEKLVKRSPALAEVTLDAYERTILSSIVTPDEINITFQDIGGLDPLISDLHESVI 108
Query: 111 LSI------AKSPI-EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFG 163
+ + SP+ + P G+LL+GPPG GK++LA A+A A F S++ S ++ K++G
Sbjct: 109 YPLMMPEVYSNSPLLQAPSGVLLYGPPGCGKTMLAKALAKESGANFISIRMSSIMDKWYG 168
Query: 164 ESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAARRMIGTLLAEM----DGFKE 219
ES+K++ A+FSLA +L P +IFIDE+DS +R S D + TL AE DG
Sbjct: 169 ESNKIVDAMFSLANKLQPCIIFIDEIDSFLRERSSTD---HEVTATLKAEFMTLWDGLL- 224
Query: 220 RKDKVIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYD---VPLS 276
+V+++ ATN D+D+A L RLP R V LP + +I + L+ D L
Sbjct: 225 NNGRVMIIGATNRINDIDDAFLRRLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQ 284
Query: 277 RLAKEAVKRLYSGREIANVVKLATMKMLEE---MNPELSDPLRVSTLKGRDLTTRPLTLD 333
+A + +SG ++ + + A + +E +L D + L RPL
Sbjct: 285 LIADNT--KGFSGSDLKELCREAALDAAKEYIKQKRQLIDSGTIDVNDTSSLKIRPLKTK 342
Query: 334 DF 335
DF
Sbjct: 343 DF 344
>sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) (MG(2+)-DEPENDENT ATPASE 1) (LEMA-1)
>gi|1362099|pir||S56672 probable 26S proteinase chain
MA-1 - tomato >gi|732815|emb|CAA52445.1| (X74426)
Mg-dependent ATPase 1 [Lycopersicon esculentum]
Length = 423
Score = 127 bits (317), Expect = 1e-28
Identities = 81/222 (36%), Positives = 127/222 (56%), Gaps = 17/222 (7%)
Query: 75 NEYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILL 126
+EY ++KA+ ++ T ++DIGGL + + + +AI L + K + PP+G+LL
Sbjct: 150 SEYDSRVKAMEVDEKPTEDYHDIGGLEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLL 209
Query: 127 FGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFI 186
+GPPGTGK+L+A A A NATF + L+ + G+ +KL+ F LA++ SP +IFI
Sbjct: 210 YGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFI 269
Query: 187 DEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
DE+D++ KR VS D +R + LL ++DGF D++ V+ ATN LD A++
Sbjct: 270 DEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSS-DDRIKVIAATNRADILDPALMR 328
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P P + I +IH R ++ DV LA+
Sbjct: 329 SGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELAR 370
>dbj|BAA88165.1| (AB024399) FtsH (FtsHcp) [Cyanidioschyzon merolae]
Length = 603
Score = 127 bits (316), Expect = 2e-28
Identities = 82/242 (33%), Positives = 137/242 (55%), Gaps = 23/242 (9%)
Query: 78 FDKLKA---LIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIE-------PPQGILLF 127
F K KA ++ ++ I ++D+ G+ EAK+ +A+ + + K+P + P+G+LL
Sbjct: 136 FGKSKARFQMVAKTGIMFDDVAGIEEAKEELAEVV--AFLKNPSKFLAVGASIPKGVLLV 193
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA A+A + FFS+ S+ + + G + + LF A+Q +P ++FID
Sbjct: 194 GPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKQNAPCLVFID 253
Query: 188 EVDSLTMKRVS----LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ +R + +D + + LL EMDGF E VIV+ ATN LD A+L
Sbjct: 254 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF-EGNTGVIVIAATNRVDVLDAALLRP 312
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHL--RGIHYDVPLSRLAKEAVKRLYSGREIANVVKLA 299
R +I V +PDV S + I K+H + +H V L +A+ ++G ++AN++ A
Sbjct: 313 GRFDRQIMVSMPDVKSRIAILKVHANQKKLHPQVSLEAVARRTAG--FAGADLANLLNEA 370
Query: 300 TM 301
+
Sbjct: 371 AI 372
>sp|P46468|CDAT_PLAFA PUTATIVE CELL DIVISION CYCLE ATPASE >gi|552189|gb|AAA29520.1|
(M96757) cell division cycle ATPase [Plasmodium
falciparum]
Length = 709
Score = 127 bits (315), Expect = 3e-28
Identities = 71/159 (44%), Positives = 98/159 (60%), Gaps = 9/159 (5%)
Query: 89 TITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSLLASAVA 142
T+TWNDIGG+ E K+ + + I + K +GILL+GPPG GK+LLA A+A
Sbjct: 552 TVTWNDIGGMNEVKEQLKETILYPLEYKHLYNKFNSNYNKGILLYGPPGCGKTLLAKAIA 611
Query: 143 NSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS--LD 200
N A F SVK +LL+ +FGES + LF AR SP +IF DE+DSL +R S +
Sbjct: 612 NECKANFISVKGPELLTMWFGESEANVRDLFDKARAASPCIIFFDEIDSLAKERNSNTNN 671
Query: 201 DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEA 239
DA+ R+I +L E+DG E+K + ++ ATN P LD+A
Sbjct: 672 DASDRVINQILTEIDGINEKK-TIFIIAATNRPDILDKA 709
Score = 123 bits (306), Expect = 3e-27
Identities = 85/267 (31%), Positives = 139/267 (51%), Gaps = 16/267 (5%)
Query: 52 ILLEEAKKWEEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGL 111
I+ EE++ E + EY + IT+ D+GG+++ I + I L
Sbjct: 108 IISEESENEEFGCIGEHSQLTLAEEYLKREDYEENNDDITYEDLGGMKKQLNKIRELIEL 167
Query: 112 SIAKSP-------IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGE 164
+ K P I P+G+L+ G PGTGK+ +A A+AN NA + + +++SK+ GE
Sbjct: 168 PL-KYPEIFMSIGISAPKGVLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIGE 226
Query: 165 SSKLISALFSLARQLSPSVIFIDEVDSLTMKR-VSLDDAARRMIGTLLAEMDGFKERKDK 223
S + + +F A + +P +IFIDE+DS+ KR S ++ +R++ LL MDG K + +
Sbjct: 227 SEQKLRKIFKKASEKTPCIIFIDEIDSIANKRSKSNNELEKRVVSQLLTLMDGLK-KNNN 285
Query: 224 VIVLTATNAPWDLDEAM--LSRLPIRIYVPLPDVNSAVEIF--KIHLRGIHYDVPLSRLA 279
V+VL ATN P +D A+ R I +P+PD EI K + DV L ++A
Sbjct: 286 VLVLAATNRPNSIDPALRRFGRFDREIEIPVPDEQGRYEILLTKTKKMKLDPDVNLRKIA 345
Query: 280 KEAVKRLYSGREIANVVKLATMKMLEE 306
KE Y G ++A + A ++ ++E
Sbjct: 346 KEC--HGYVGADLAQLCFEAAIQCIKE 370
>gb|AAF91248.1|AF227504_1 (AF227504) proteasome regulatory ATPase subunit 6 [Trypanosoma
brucei]
Length = 408
Score = 127 bits (315), Expect = 3e-28
Identities = 84/207 (40%), Positives = 121/207 (57%), Gaps = 20/207 (9%)
Query: 79 DKLKALIK----RSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLF 127
D L +L+K S T+++IGGL K I + I LS+ K P I P+G+LL+
Sbjct: 132 DPLVSLMKVENAGSESTYDEIGGLSRQVKEIKEVIELSV-KHPELFEALGIAQPKGVLLY 190
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA AVA+ + TF V ++L+ KY GE ++L+ LF +AR+ SPS+IF+D
Sbjct: 191 GPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARLVRELFVMAREHSPSIIFMD 250
Query: 188 EVDSLTMKRVSL-----DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML- 241
E+DS+ R+ D +R + LL ++DGF E + V+ ATN LDEA+L
Sbjct: 251 EIDSIGSTRLENTGRGGDSEVQRTMLELLNQLDGF-ESTQSIKVIMATNRVDILDEALLR 309
Query: 242 -SRLPIRIYVPLPDVNSAVEIFKIHLR 267
R+ +I PD + EI KI+ R
Sbjct: 310 PGRIDRKIEFSAPDEPARFEILKINSR 336
>sp|P47695|FTSH_MYCGE CELL DIVISION PROTEIN FTSH HOMOLOG >gi|1361466|pir||E64250 cell
division protein ftsH - Mycoplasma genitalium
>gi|3845051|gb|AAC72477.1| (U39727) cell division
protein (ftsH) [Mycoplasma genitalium]
Length = 702
Score = 126 bits (314), Expect = 3e-28
Identities = 82/235 (34%), Positives = 125/235 (52%), Gaps = 16/235 (6%)
Query: 80 KLKALIKRSTITWNDIGGLREAKKLIAQAIG-----LSIAKSPIEPPQGILLFGPPGTGK 134
K +A + +ST+ + +I GL+E K + + + L A+ P+G++L+GPPGTGK
Sbjct: 218 KTQAKLAKSTVKFTNIAGLQEEKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGK 277
Query: 135 SLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTM 194
+LLA AVA FF S G +K + LF+ A++ +P +IFIDE+DS+
Sbjct: 278 TLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGS 337
Query: 195 KR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRI 248
KR +S + + LLAEMDGF R V+V+ ATN LD+A+L R I
Sbjct: 338 KRGRVELSSYSVVEQTLNQLLAEMDGFTSRTG-VVVMAATNRLDVLDDALLRPGRFDRHI 396
Query: 249 YVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRL--YSGREIANVVKLATM 301
+ LPD+ I K+H + +S L + KR +SG ++ NV+ AT+
Sbjct: 397 QINLPDIKEREGILKVHAENKNLSSKISLL--DVAKRTPGFSGAQLENVINEATL 449
>gb|AAB63647.1| (AC001645) cell division protein FtsH isolog [Arabidopsis thaliana]
Length = 983
Score = 125 bits (311), Expect = 7e-28
Identities = 97/359 (27%), Positives = 173/359 (48%), Gaps = 50/359 (13%)
Query: 2 YRLQLLQVQKCQEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWE 61
YR+ +L +K ++++E L + K ++ L E + E
Sbjct: 479 YRVVVLNYRKQKKDYEDRLKI-----------------EKAEADERKKMRELEREMEGIE 521
Query: 62 EKAKNVRKRREGKNEY------FDKLKALIKRST-------------ITWNDIGGLREAK 102
E+ + V + KN Y F K A ++R++ + + D+ GL + +
Sbjct: 522 EEDEEVEEGTGEKNPYLQMAMQFMKSGARVRRASNKRLPEYLERGVDVKFTDVAGLGKIR 581
Query: 103 KLIAQAI-----GLSIAKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDL 157
+ + + G + ++ P GILL GPPG GK+LLA AVA FFS+ AS
Sbjct: 582 LELEEIVKFFTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 641
Query: 158 LSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAARR----MIGTLLAE 213
+ Y G + + AL+ AR+ +PSV+FIDE+D++ +R + + + + LL
Sbjct: 642 VEIYVGVGASRVRALYQEARENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVS 701
Query: 214 MDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY 271
+DGF E + +VI + +TN P LD A++ R +I++P P + +EI ++H R
Sbjct: 702 LDGF-EGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPM 760
Query: 272 DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELS--DPLRVSTLKGRDLTTR 328
L +A ++ G E+AN+V++A + M+ + EL+ D L+ + ++ R + R
Sbjct: 761 AEDLDYMAVASMTDGMVGAELANIVEIAAINMMRDGRTELTTDDLLQAAQIEERGMLDR 819
>gb|AAF47769.1| (AE003478) CG12010 gene product [Drosophila melanogaster]
Length = 736
Score = 125 bits (311), Expect = 7e-28
Identities = 88/337 (26%), Positives = 159/337 (47%), Gaps = 49/337 (14%)
Query: 42 IASENLSLSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREA 101
+ ++ + HI L+ + + A R + + T + IGG+
Sbjct: 431 LTKDDFDIEHIFLKSLSQTQPSASRSTDVR-------------VSKMTAGFEVIGGMEAL 477
Query: 102 KKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKAS 155
K+ + ++ I +S + P+G+LL+GPPG K+ +A +A + TF + A+
Sbjct: 478 KRTLQVSVLAGIRQSAAFARFGLSLPKGVLLYGPPGCAKTTVAKCLAKEADMTFIATSAA 537
Query: 156 DLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-----DAARRMIGTL 210
++ S Y G + + IS +F AR+ +P +IF+DE+DSL +R R++ TL
Sbjct: 538 EVYSPYVGCAERFISRIFDTARKNAPCLIFLDEIDSLVGRRTVSSGGGGGQVQLRILSTL 597
Query: 211 LAEMDGF--KERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHL 266
L EM+G + ++V+ ATN P +D+A+L R I+VP PD S + + K+H
Sbjct: 598 LTEMNGIVGGGSQQHILVVAATNRPDMIDDALLRPGRFDKLIHVPAPDEKSRLALLKLHS 657
Query: 267 RGI--HYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVSTLKGRD 324
+ + H +V L +A + YSG ++ N+ A ++ + RD
Sbjct: 658 QRMPFHENVFLQEIAARTDR--YSGADLCNLCNEAAIEAFQ-----------------RD 698
Query: 325 LTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEF 361
+ L DF+ + + KS +T+S + Y ++A F
Sbjct: 699 FKATEIELQDFEKVLTKQKSSLTQSQIDGYYKFAYRF 735
>dbj|BAB01269.1| (AB023046) cell division protein FtsH-like [Arabidopsis thaliana]
Length = 976
Score = 125 bits (311), Expect = 7e-28
Identities = 97/359 (27%), Positives = 173/359 (48%), Gaps = 50/359 (13%)
Query: 2 YRLQLLQVQKCQEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWE 61
YR+ +L +K ++++E L + K ++ L E + E
Sbjct: 417 YRVVVLNYRKQKKDYEDRLKI-----------------EKAEADERKKMRELEREMEGIE 459
Query: 62 EKAKNVRKRREGKNEY------FDKLKALIKRST-------------ITWNDIGGLREAK 102
E+ + V + KN Y F K A ++R++ + + D+ GL + +
Sbjct: 460 EEDEEVEEGTGEKNPYLQMAMQFMKSGARVRRASNKRLPEYLERGVDVKFTDVAGLGKIR 519
Query: 103 KLIAQAI-----GLSIAKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDL 157
+ + + G + ++ P GILL GPPG GK+LLA AVA FFS+ AS
Sbjct: 520 LELEEIVKFFTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 579
Query: 158 LSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAARR----MIGTLLAE 213
+ Y G + + AL+ AR+ +PSV+FIDE+D++ +R + + + + LL
Sbjct: 580 VEIYVGVGASRVRALYQEARENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVS 639
Query: 214 MDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY 271
+DGF E + +VI + +TN P LD A++ R +I++P P + +EI ++H R
Sbjct: 640 LDGF-EGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPM 698
Query: 272 DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELS--DPLRVSTLKGRDLTTR 328
L +A ++ G E+AN+V++A + M+ + EL+ D L+ + ++ R + R
Sbjct: 699 AEDLDYMAVASMTDGMVGAELANIVEIAAINMMRDGRTELTTDDLLQAAQIEERGMLDR 757
>emb|CAA56963.1| (X81072) YTA7 [Saccharomyces cerevisiae]
Length = 1379
Score = 125 bits (310), Expect = 1e-27
Identities = 94/298 (31%), Positives = 155/298 (51%), Gaps = 26/298 (8%)
Query: 63 KAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP----- 117
K +N +K+++ K E D L L + ++DIGGL + + + L +
Sbjct: 384 KKENTQKKKKKKPEIAD-LDPLGVDMNVNFDDIGGLDNYIDQLKEMVALPLLYPELYQNF 442
Query: 118 -IEPPQGILLFGPPGTGKSLLASAVANSLNA-----TFFSVKASDLLSKYFGESSKLISA 171
I PP+G+L GPPGTGK+L+A A+A S ++ TFF K +D+LSK+ GE+ + +
Sbjct: 443 NITPPRGVLFHGPPGTGKTLMARALAASCSSDERKITFFMRKGADILSKWVGEAERQLRL 502
Query: 172 LFSLARQLSPSVIFIDEVDSLTMKRVSLDDAAR-RMIGTLLAEMDGFKERKDKVIVLTAT 230
LF A++ PS+IF DE+D L R S + ++ TLLA MDG + + +VIV+ AT
Sbjct: 503 LFEEAKKHQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGM-DNRGQVIVIGAT 561
Query: 231 NAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEA-VKRLY 287
N P +D A+ R Y PLPDV + +I +I R + + + K A + + Y
Sbjct: 562 NRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNFIDKLAFLTKGY 621
Query: 288 SGREIANVVKLATMKMLEEMNPEL---SDPLRVSTLKGRDLTTRPLTLDDFKYAMARI 342
G ++ ++ A + ++ P++ +D L V K + + + DF A+ +I
Sbjct: 622 GGADLRSLCTEAALISIQRSFPQIYRSNDKLLVDPSKIK------VKVSDFMLALKKI 673
>gi|6321709 26S proteasome ATPase; Yta7p [Saccharomyces cerevisiae]
>gi|1729862|sp|P40340|TBP7_YEAST TAT-BINDING HOMOLOG 7
>gi|2133219|pir||S64603 YTA7 protein - yeast
(Saccharomyces cerevisiae) >gi|1323491|emb|CAA97300.1|
(Z73055) ORF YGR270w [Saccharomyces cerevisiae]
>gi|1556439|emb|CAA69201.1| (Y07893) yta7 [Saccharomyces
cerevisiae]
Length = 1379
Score = 125 bits (310), Expect = 1e-27
Identities = 94/298 (31%), Positives = 155/298 (51%), Gaps = 26/298 (8%)
Query: 63 KAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP----- 117
K +N +K+++ K E D L L + ++DIGGL + + + L +
Sbjct: 384 KKENTQKKKKKKPEIAD-LDPLGVDMNVNFDDIGGLDNYIDQLKEMVALPLLYPELYQNF 442
Query: 118 -IEPPQGILLFGPPGTGKSLLASAVANSLNA-----TFFSVKASDLLSKYFGESSKLISA 171
I PP+G+L GPPGTGK+L+A A+A S ++ TFF K +D+LSK+ GE+ + +
Sbjct: 443 NITPPRGVLFHGPPGTGKTLMARALAASCSSDERKITFFMRKGADILSKWVGEAERQLRL 502
Query: 172 LFSLARQLSPSVIFIDEVDSLTMKRVSLDDAAR-RMIGTLLAEMDGFKERKDKVIVLTAT 230
LF A++ PS+IF DE+D L R S + ++ TLLA MDG + + +VIV+ AT
Sbjct: 503 LFEEAKKHQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGM-DNRGQVIVIGAT 561
Query: 231 NAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEA-VKRLY 287
N P +D A+ R Y PLPDV + +I +I R + + + K A + + Y
Sbjct: 562 NRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNFIDKLAFLTKGY 621
Query: 288 SGREIANVVKLATMKMLEEMNPEL---SDPLRVSTLKGRDLTTRPLTLDDFKYAMARI 342
G ++ ++ A + ++ P++ +D L V K + + + DF A+ +I
Sbjct: 622 GGADLRSLCTEAALISIQRSFPQIYRSNDKLLVDPSKIK------VKVSDFMLALKKI 673
>emb|CAB58003.1| (AL121800) BACN5I9.i [Drosophila melanogaster]
>gi|7290407|gb|AAF45864.1| (AE003427) CG10793 gene
product [Drosophila melanogaster]
Length = 479
Score = 125 bits (310), Expect = 1e-27
Identities = 75/189 (39%), Positives = 111/189 (58%), Gaps = 19/189 (10%)
Query: 80 KLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEPPQ----------GILLFGP 129
K L + I W+D+ G + A +LI +A+ +PIE PQ +LL GP
Sbjct: 193 KTSILQENIKIKWSDVCGNQRAIELIKEAV-----LTPIEFPQLFAHGLKPWRSLLLHGP 247
Query: 130 PGTGKSLLASAVANSLNA--TFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
PG+GK+LLA A+ + TFF++ AS ++SK+ GES K++ LF +A + +PSVIF D
Sbjct: 248 PGSGKTLLAKALYSETQGQVTFFNITASIMVSKWRGESEKILRVLFHMAAKRAPSVIFFD 307
Query: 188 EVDSLTMKRVSLDD--AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRLP 245
E++SLT KR D +++R LL +DG + + V VL +TN PWD+DEA L R
Sbjct: 308 EIESLTSKRDRATDHESSKRFKNELLQLLDGMEHSLNGVFVLASTNLPWDIDEAFLRRFE 367
Query: 246 IRIYVPLPD 254
++ V LP+
Sbjct: 368 KKLLVQLPN 376
>emb|CAB58013.1| (AL121800) BACN5I9.gs.8 [Drosophila melanogaster]
Length = 545
Score = 125 bits (310), Expect = 1e-27
Identities = 75/189 (39%), Positives = 111/189 (58%), Gaps = 19/189 (10%)
Query: 80 KLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEPPQ----------GILLFGP 129
K L + I W+D+ G + A +LI +A+ +PIE PQ +LL GP
Sbjct: 259 KTSILQENIKIKWSDVCGNQRAIELIKEAV-----LTPIEFPQLFAHGLKPWRSLLLHGP 313
Query: 130 PGTGKSLLASAVANSLNA--TFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
PG+GK+LLA A+ + TFF++ AS ++SK+ GES K++ LF +A + +PSVIF D
Sbjct: 314 PGSGKTLLAKALYSETQGQVTFFNITASIMVSKWRGESEKILRVLFHMAAKRAPSVIFFD 373
Query: 188 EVDSLTMKRVSLDD--AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRLP 245
E++SLT KR D +++R LL +DG + + V VL +TN PWD+DEA L R
Sbjct: 374 EIESLTSKRDRATDHESSKRFKNELLQLLDGMEHSLNGVFVLASTNLPWDIDEAFLRRFE 433
Query: 246 IRIYVPLPD 254
++ V LP+
Sbjct: 434 KKLLVQLPN 442
>sp|P75120|FTSH_MYCPN CELL DIVISION PROTEIN FTSH HOMOLOG >gi|2146083|pir||S73497 cell
division protein ftsH - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1673833|gb|AAB95819.1| (AE000018) cell
division protein FtsH [Mycoplasma pneumoniae]
Length = 709
Score = 124 bits (309), Expect = 1e-27
Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 16/235 (6%)
Query: 80 KLKALIKRSTITWNDIGGLREAKKLIAQAIG-----LSIAKSPIEPPQGILLFGPPGTGK 134
K +A + +S++ +++I GL+E K + + + L A+ P+G++L+GPPGTGK
Sbjct: 215 KTQAKLAKSSVRFDNIAGLQEEKHELLEIVDYLKNPLKYAQMGARSPRGVILYGPPGTGK 274
Query: 135 SLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTM 194
+LLA AVA FF S G +K + LF+ A++ +P +IFIDE+DS+
Sbjct: 275 TLLAKAVAGEAGVPFFQSTGSGFEDMLVGVGAKRVRDLFNKAKKAAPCIIFIDEIDSVGS 334
Query: 195 KR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRI 248
KR +S + + LLAEMDGF R V+V+ ATN LD+A+L R I
Sbjct: 335 KRGRVELSSYSVVEQTLNQLLAEMDGFTSRTG-VVVMAATNRLDVLDDALLRPGRFDRHI 393
Query: 249 YVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRL--YSGREIANVVKLATM 301
+ LPD+ I ++H + + +S L + KR +SG ++ NV+ AT+
Sbjct: 394 QINLPDIKEREGILQVHAKNKNLSSKISLL--DVAKRTPGFSGAQLENVINEATL 446
>pir||T03904 hypothetical protein F39G3.7 - Caenorhabditis elegans
>gi|7511608|pir||T37276 protein PEX6 homolog -
Caenorhabditis elegans >gi|7511609|pir||T37307 protein
Pex6p homolog - Caenorhabditis elegans
>gi|2291210|gb|AAB65332.1| (AF016424) contains
similarity to the AAA family of ATPases [Caenorhabditis
elegans] >gi|3721554|dbj|BAA33544.1| (AB010968) PEX6
[Caenorhabditis elegans] >gi|4586630|dbj|BAA76440.1|
(AB012224) Pex6p homolog [Caenorhabditis elegans]
Length = 720
Score = 124 bits (309), Expect = 1e-27
Identities = 91/293 (31%), Positives = 146/293 (49%), Gaps = 17/293 (5%)
Query: 37 ELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLKALI-------KRST 89
+L +A + + LE+ K +K K K + + DK + K
Sbjct: 402 KLANHVAKKTSGFTLAELEKLVKNGKKVKIEEKEEKVYEDLIDKRNSNFADAIGAPKIPN 461
Query: 90 ITWNDIGGLREAKKLIAQAIGLSIAKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATF 149
+ W D+GGL E K+ + ++I ++ S GI+L+G PG GK+L+A AVA F
Sbjct: 462 VRWEDVGGLEETKQTVLESIRTNLFGSRALKRSGIILYGSPGCGKTLIAKAVATEFKIAF 521
Query: 150 FSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAA---RRM 206
SVK +LL+KY G+S + + +F A+Q SP VIF DE+DSL R D+ R+
Sbjct: 522 LSVKGPELLNKYVGQSEENLRKVFERAKQASPCVIFFDEIDSLAPNRGRNGDSGGVIDRI 581
Query: 207 IGTLLAEMDGFKERK-DKVIVLTATNAPWDLDEAMLS--RLPIRIYV-PLPDVNSAVEIF 262
+ LLAE+D KV V+ ATN P LD ++++ R + V P DV S +I
Sbjct: 582 VSQLLAELDKLHNSPLTKVFVMGATNRPDLLDNSLMTPGRFDKLVEVKPGEDVESKTKIL 641
Query: 263 KIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSD 313
+ R + + DV L +A + +++ SG ++ +++ A M + E + D
Sbjct: 642 EAVSRKMRFEEDVDLREIASKVDEKM-SGAQLFSIISNAGMAAIVETIQSIED 693
>gi|11467752 hypothetical chloroplast RF25 [Guillardia theta]
>gi|6016057|sp|O78516|FTSH_GUITH CELL DIVISION PROTEIN
FTSH HOMOLOG >gi|3603077|gb|AAC35738.1| (AF041468)
hypothetical chloroplast RF25 [Guillardia theta]
Length = 631
Score = 124 bits (308), Expect = 2e-27
Identities = 80/245 (32%), Positives = 131/245 (52%), Gaps = 19/245 (7%)
Query: 73 GKNEYFDKLKALIK---RSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQ 122
G+ F K KA + ++ +T+ND+ G+ EAK+ + + S K P + P+
Sbjct: 150 GQAMNFGKSKARFQMEAKTGVTFNDVAGVDEAKEEFEEVV--SFLKKPERFTAVGAKIPK 207
Query: 123 GILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPS 182
G+LL GPPGTGK+LLA A+A FFS+ S+ + + G + + LF A++ SP
Sbjct: 208 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPC 267
Query: 183 VIFIDEVDSLTMKRVS----LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDE 238
++FIDE+D++ +R + +D + + LL EMDGF E +I++ ATN LD
Sbjct: 268 IVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-EGNTGIIIIAATNRVDVLDA 326
Query: 239 AML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVV 296
A+L R ++ V +PDV +EI +H R D+ +S +SG ++AN++
Sbjct: 327 ALLRPGRFDRQVTVDVPDVKGRLEILNVHARNKKLDLSISLELIAKRTPGFSGADLANLL 386
Query: 297 KLATM 301
A +
Sbjct: 387 NEAAI 391
>emb|CAA47023.1| (X66400) sug1 [Saccharomyces cerevisiae] >gi|1195528|gb|AAB35417.1|
26S protease subunit S8=SUG1 homolog [human,
erythrocytes, Peptide, 405 aa]
Length = 405
Score = 123 bits (307), Expect = 2e-27
Identities = 90/254 (35%), Positives = 139/254 (54%), Gaps = 17/254 (6%)
Query: 67 VRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IE 119
+ K E K + L + K T++ +GGL + K I + I L + K P I
Sbjct: 122 LHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPV-KHPELFESLGIA 180
Query: 120 PPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQL 179
P+G++L+GPPGTGK+LLA AVA+ + F V ++L+ KY GE S+++ LF +AR+
Sbjct: 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREH 240
Query: 180 SPSVIFIDEVDSLTMKRV----SLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWD 235
+PS+IF+DE+DS+ RV D +R + LL ++DGF+ K+ + ++ ATN
Sbjct: 241 APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN-IKIIMATNRLDI 299
Query: 236 LDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVK-RLYSGREI 292
LD A+L R+ +I P P V + EI +IH R ++ ++ L K A K SG ++
Sbjct: 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN-LRKVAEKMNGCSGADV 358
Query: 293 ANVVKLATMKMLEE 306
V A M L E
Sbjct: 359 KGVCTEAGMYALRE 372
>gi|6321390 ATPase; Rpt6p [Saccharomyces cerevisiae]
>gi|1709801|sp|Q01939|PRS8_YEAST 26S PROTEASE REGULATORY
SUBUNIT 8 HOMOLOG (SUG1 PROTEIN) (CIM3 PROTEIN)
(TAT-BINDING PROTEIN TBY1) >gi|2133183|pir||S64052 26S
proteasome regulatory particle chain RPT6 - yeast
(Saccharomyces cerevisiae) >gi|172878|gb|AAA35138.1|
(L01626) Tat-binding protein [Saccharomyces cerevisiae]
>gi|1322539|emb|CAA96750.1| (Z72570) ORF YGL048c
[Saccharomyces cerevisiae]
Length = 405
Score = 123 bits (307), Expect = 2e-27
Identities = 90/254 (35%), Positives = 139/254 (54%), Gaps = 17/254 (6%)
Query: 67 VRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IE 119
+ K E K + L + K T++ +GGL + K I + I L + K P I
Sbjct: 122 LHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPV-KHPELFESLGIA 180
Query: 120 PPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQL 179
P+G++L+GPPGTGK+LLA AVA+ + F V ++L+ KY GE S+++ LF +AR+
Sbjct: 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREH 240
Query: 180 SPSVIFIDEVDSLTMKRV----SLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWD 235
+PS+IF+DE+DS+ RV D +R + LL ++DGF+ K+ + ++ ATN
Sbjct: 241 APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN-IKIIMATNRLDI 299
Query: 236 LDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVK-RLYSGREI 292
LD A+L R+ +I P P V + EI +IH R ++ ++ L K A K SG ++
Sbjct: 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN-LRKVAEKMNGCSGADV 358
Query: 293 ANVVKLATMKMLEE 306
V A M L E
Sbjct: 359 KGVCTEAGMYALRE 372
>prf||1813279A SUG1 gene [Saccharomyces cerevisiae]
Length = 400
Score = 123 bits (307), Expect = 2e-27
Identities = 90/254 (35%), Positives = 139/254 (54%), Gaps = 17/254 (6%)
Query: 67 VRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IE 119
+ K E K + L + K T++ +GGL + K I + I L + K P I
Sbjct: 122 LHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPV-KHPELFESLGIA 180
Query: 120 PPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQL 179
P+G++L+GPPGTGK+LLA AVA+ + F V ++L+ KY GE S+++ LF +AR+
Sbjct: 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREH 240
Query: 180 SPSVIFIDEVDSLTMKRV----SLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWD 235
+PS+IF+DE+DS+ RV D +R + LL ++DGF+ K+ + ++ ATN
Sbjct: 241 APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN-IKIIMATNRLDI 299
Query: 236 LDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVK-RLYSGREI 292
LD A+L R+ +I P P V + EI +IH R ++ ++ L K A K SG ++
Sbjct: 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN-LRKVAEKMNGCSGADV 358
Query: 293 ANVVKLATMKMLEE 306
V A M L E
Sbjct: 359 KGVCTEAGMYALRE 372
>gb|AAB70882.1| (U77918) spermatogenic cell/sperm-associated Tat-binding protein
homolog Sata [Rattus norvegicus]
Length = 442
Score = 123 bits (307), Expect = 2e-27
Identities = 81/221 (36%), Positives = 127/221 (56%), Gaps = 17/221 (7%)
Query: 76 EYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLF 127
EY ++KA+ +R T ++DIGGL + + + +AI L + I+PP+G+L++
Sbjct: 170 EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 229
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA A A ATF + L+ + G+ +KL+ F+LA++ +PS+IFID
Sbjct: 230 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 289
Query: 188 EVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ KR + A +R + LL +MDGF + +V V+ ATN LD A+L
Sbjct: 290 ELDAIGTKRFDSEKAGDREVQRTMLELLNQMDGF-QPNTQVKVIAATNRVDILDPALLRS 348
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P+P+ + I +IH R + DV LA+
Sbjct: 349 GRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 389
>sp|P34124|PRS8_DICDI 26S PROTEASE REGULATORY SUBUNIT 8 (TAT-BINDING PROTEIN HOMOLOG 10)
>gi|422297|pir||JN0610 probable transcription factor
DdTBP10 - slime mold (Dictyostelium discoideum)
(fragment) >gi|290057|gb|AAA33254.1| (L16579) HIV1
TAT-binding protein [Dictyostelium discoideum]
Length = 389
Score = 123 bits (306), Expect = 3e-27
Identities = 91/251 (36%), Positives = 134/251 (53%), Gaps = 19/251 (7%)
Query: 79 DKLKALIKRSTI---TWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFG 128
D L +L+K I T++ +GGL + K I + I L I K P I P+G+LL+G
Sbjct: 114 DPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPI-KHPELFESLGIAQPKGVLLYG 172
Query: 129 PPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDE 188
PPGTGK+LLA AVA+ + TF V S+L+ KY GE S+++ LF +AR+ +PS+IF+DE
Sbjct: 173 PPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDE 232
Query: 189 VDSLTMKRVSL-----DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
+DS+ R D +R + LL ++DGF+ K+ + VL TN LD A+L
Sbjct: 233 IDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKN-IKVLMCTNRIDILDPALLRP 291
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATM 301
R+ +I P P ++I KIH R ++ ++ SG E+ V A M
Sbjct: 292 GRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGM 351
Query: 302 KMLEEMNPELS 312
L E +S
Sbjct: 352 YALRERRVHVS 362
>pir||A48667 peroxisomal assembly protein 5 - yeast (Pichia pastoris)
Length = 1165
Score = 123 bits (305), Expect = 4e-27
Identities = 110/376 (29%), Positives = 177/376 (46%), Gaps = 51/376 (13%)
Query: 26 DKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKR-REGKNEYFDKLKAL 84
+ A+ +A+ E L K N+S +++ + ++V K +N++ D + A
Sbjct: 754 ENAKTLAVDRVESLAK--HHNVSFENMVYSSGGYIKFTPEDVEKSINTARNKFSDSIGAP 811
Query: 85 IKRSTITWNDIGGLREAKKLIAQAIGL-----SIAKSPIEPPQGILLFGPPGTGKSLLAS 139
+ + W D+GGL K I I + + + I+ GIL +GPPGTGK+LLA
Sbjct: 812 -RIPNVKWEDVGGLDVVKDEILDTIDMPMKHPELFSNGIKKRSGILFYGPPGTGKTLLAK 870
Query: 140 AVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL 199
A+A + FFSVK +LL+ Y GES + +F AR P V+F DE+DS+ KR +
Sbjct: 871 AIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQ 930
Query: 200 DDAA---RRMIGTLLAEMDGFK--ERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPL 252
D+ R++ LLAE+DG + D V V+ ATN P LDEA+L R +Y+ +
Sbjct: 931 GDSGGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGV 990
Query: 253 PDVNSAVEIF------KIHLRGIHYDVPLSRLAKEAVKRLYSGRE--------------- 291
D + K HL H V L ++A E+ ++G +
Sbjct: 991 SDTHEKQSKIMEALSRKFHL---HPSVDLDKVA-ESCPFTFTGADFYALCSDAMLNAMTR 1046
Query: 292 IANVVKLATMKMLEEMNPELSDPLRVSTLKGRD-LTTRP-----LTLDDFKYAMARIKSP 345
IAN V + ++ N EL + +VST D + T+ +TL+DF + +
Sbjct: 1047 IANTVD----EKIKRYNEELPEKSQVSTRWWFDNVATKEDIDVLVTLEDFDKSRKELVPS 1102
Query: 346 ITKSDVKKYERWAKEF 361
++ ++ Y R + F
Sbjct: 1103 VSAEELDHYLRVRQNF 1118
>sp|Q25544|PRS8_NAEFO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG) >gi|1353667|gb|AAB01762.1| (U41812) Tat-binding
protein homolog [Naegleria fowleri]
Length = 414
Score = 123 bits (305), Expect = 4e-27
Identities = 88/245 (35%), Positives = 133/245 (53%), Gaps = 19/245 (7%)
Query: 79 DKLKALIKRSTI---TWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFG 128
D L +L+K + T+ +GGL E K I + I L I K P I P+G++++G
Sbjct: 139 DPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPI-KHPELFESLGIAQPKGVIMYG 197
Query: 129 PPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDE 188
PPGTGK+LLA AVA+ + TF V S+L+ KY GE SK++ LF +AR+ +PS+IF+DE
Sbjct: 198 PPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDE 257
Query: 189 VDSLTMKRV-----SLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
+DS+ R D +R + LL ++DGF E + ++ ATN LD A+L
Sbjct: 258 IDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGF-ESTQNIKIIMATNRIDILDPALLRP 316
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATM 301
R+ +I P P+ + ++I KIH R ++ ++ ++ SG EI A M
Sbjct: 317 GRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGM 376
Query: 302 KMLEE 306
L E
Sbjct: 377 FALRE 381
>sp|O42586|PRSB_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 10)
(TBP-10) >gi|2648045|emb|CAA71486.1| (Y10460) TBP10
protein [Xenopus laevis]
Length = 404
Score = 123 bits (305), Expect = 4e-27
Identities = 81/221 (36%), Positives = 127/221 (56%), Gaps = 17/221 (7%)
Query: 76 EYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLF 127
EY ++KA+ +R T ++DIGGL + + + +AI L + I+PP+G+L++
Sbjct: 132 EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 191
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA A A ATF + L+ + G+ +KL+ FSLA++ +PS+IFID
Sbjct: 192 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFSLAKEKAPSIIFID 251
Query: 188 EVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ KR + A +R + LL ++DGF + +V V+ ATN LD A+L
Sbjct: 252 ELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGF-QPTTQVKVIAATNRVDILDPALLRS 310
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P+P+ + I +IH R + DV LA+
Sbjct: 311 GRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 351
>pir||D82934 ATP-dependent zinc metallopeptidase, cell division protein UU105
[imported] - Ureaplasma urealyticum
>gi|6899060|gb|AAF30511.1|AE002110_9 (AE002110)
ATP-dependent zinc metallopeptidase - cell division
protein [Ureaplasma urealyticum]
Length = 721
Score = 123 bits (305), Expect = 4e-27
Identities = 78/233 (33%), Positives = 126/233 (53%), Gaps = 13/233 (5%)
Query: 79 DKLKALIKRSTITWNDIGGLREAKKLIAQAIGL-----SIAKSPIEPPQGILLFGPPGTG 133
+K A + +S + ++D+ G+ E K+ + + + + P+G++L+GPPGTG
Sbjct: 225 NKANAKLTKSGVRFSDVAGIAEVKEELIEIVDFLKEPKKYVAAGARIPKGVMLYGPPGTG 284
Query: 134 KSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLT 193
K+L+A AVA N FF S + G ++ + LF AR+ +P++IFIDE+DS+
Sbjct: 285 KTLIAKAVAGEANVPFFQTTGSSFEDTFVGVGARRVRELFEKARKSAPAIIFIDEIDSVA 344
Query: 194 MKR-VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYV 250
KR SL + I LL+E+DGF + VIV+ ATN LD+A+L R +I V
Sbjct: 345 KKRGNSLTAVQDQTINQLLSELDGF-DTSSGVIVMAATNRLDTLDDAILRPGRFDRQISV 403
Query: 251 PLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATM 301
LPD+ +I +IH R + V L +A+ +SG ++ NV+ A +
Sbjct: 404 NLPDILEREQILRIHSRNKNLSAKVSLEDIARRTAG--FSGAQLENVLNEAAL 454
>gi|4506211 proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo
sapiens] >gi|107855|pir||A34832 Tat-binding protein-1 -
human >gi|338700|gb|AAA36666.1| (M34079) tat binding
protein-1 (tbp-1) [Homo sapiens]
Length = 404
Score = 122 bits (304), Expect = 5e-27
Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 17/221 (7%)
Query: 76 EYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLF 127
EY ++KA+ +R T ++DIGGL + + + +AI L + I+PP+G+L++
Sbjct: 132 EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 191
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA A A ATF + L+ + G+ +KL+ F+LA++ +PS+IFID
Sbjct: 192 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 251
Query: 188 EVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ KR + A +R + LL ++DGF + +V V+ ATN LD A+L
Sbjct: 252 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-QPNTQVKVIAATNRVDILDPALLRS 310
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P+P+ + I +IH R + DV LA+
Sbjct: 311 GRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 351
>gb|AAB24840.1| Tat binding protein 1, TBP-1=transcriptional activator [human,
Peptide, 439 aa]
Length = 439
Score = 122 bits (304), Expect = 5e-27
Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 17/221 (7%)
Query: 76 EYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLF 127
EY ++KA+ +R T ++DIGGL + + + +AI L + I+PP+G+L++
Sbjct: 167 EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 226
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA A A ATF + L+ + G+ +KL+ F+LA++ +PS+IFID
Sbjct: 227 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 286
Query: 188 EVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ KR + A +R + LL ++DGF + +V V+ ATN LD A+L
Sbjct: 287 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-QPNTQVKVIAATNRVDILDPALLRS 345
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P+P+ + I +IH R + DV LA+
Sbjct: 346 GRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 386
>sp|P33289|PEX6_PICPA PEROXISOME BIOSYNTHESIS PROTEIN PAS5 (PEROXIN-6)
>gi|396147|emb|CAA80278.1| (Z22556) PAS5 [Pichia
pastoris]
Length = 1165
Score = 122 bits (304), Expect = 5e-27
Identities = 110/376 (29%), Positives = 177/376 (46%), Gaps = 51/376 (13%)
Query: 26 DKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKR-REGKNEYFDKLKAL 84
+ A+ +A+ E L K N+S +++ + ++V K +N++ D + A
Sbjct: 754 ENAKTLAVDRVESLAK--HHNVSFENMVYSSGGYIKFTPEDVEKSINTARNKFSDSIGAP 811
Query: 85 IKRSTITWNDIGGLREAKKLIAQAIGL-----SIAKSPIEPPQGILLFGPPGTGKSLLAS 139
+ + W D+GGL K I I + + + I+ GIL +GPPGTGK+LLA
Sbjct: 812 -RIPNVKWEDVGGLDVVKDEILDTIDMPMKHPELFSNGIKKRSGILFYGPPGTGKTLLAK 870
Query: 140 AVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL 199
A+A + FFSVK +LL+ Y GES + +F AR P V+F DE+DS+ KR +
Sbjct: 871 AIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGNQ 930
Query: 200 DDA---ARRMIGTLLAEMDGFK--ERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPL 252
D+ R++ LLAE+DG + D V V+ ATN P LDEA+L R +Y+ +
Sbjct: 931 GDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGV 990
Query: 253 PDVNSAVEIF------KIHLRGIHYDVPLSRLAKEAVKRLYSGRE--------------- 291
D + K HL H V L ++A E+ ++G +
Sbjct: 991 SDTHEKQSKIMEALSRKFHL---HPSVDLDKVA-ESCPFTFTGADFYALCSDAMLNAMTR 1046
Query: 292 IANVVKLATMKMLEEMNPELSDPLRVSTLKGRD-LTTRP-----LTLDDFKYAMARIKSP 345
IAN V + ++ N EL + +VST D + T+ +TL+DF + +
Sbjct: 1047 IANTVD----EKIKRYNEELPEKSQVSTRWWFDNVATKEDIDVLVTLEDFDKSRKELVPS 1102
Query: 346 ITKSDVKKYERWAKEF 361
++ ++ Y R + F
Sbjct: 1103 VSAEELDHYLRVRQNF 1118
>sp|P17980|PRSA_HUMAN 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1)
(PROTEASOME SUBUNIT P50)
Length = 439
Score = 122 bits (304), Expect = 5e-27
Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 17/221 (7%)
Query: 76 EYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLF 127
EY ++KA+ +R T ++DIGGL + + + +AI L + I+PP+G+L++
Sbjct: 167 EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 226
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA A A ATF + L+ + G+ +KL+ F+LA++ +PS+IFID
Sbjct: 227 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 286
Query: 188 EVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ KR + A +R + LL ++DGF + +V V+ ATN LD A+L
Sbjct: 287 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-QPNTQVKVIAATNRVDILDPALLRS 345
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P+P+ + I +IH R + DV LA+
Sbjct: 346 GRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 386
>sp|Q63569|PRSA_RAT 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1)
(SPERMATOGENIC CELL/SPERM-ASSOCIATED TAT-BINDING PROTEIN
HOMOLOG SATA) >gi|1395184|dbj|BAA11939.1| (D83522)
proteasomal ATPase (rat TBP1) [Rattus norvegicus]
Length = 439
Score = 122 bits (304), Expect = 5e-27
Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 17/221 (7%)
Query: 76 EYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLF 127
EY ++KA+ +R T ++DIGGL + + + +AI L + I+PP+G+L++
Sbjct: 167 EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 226
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA A A ATF + L+ + G+ +KL+ F+LA++ +PS+IFID
Sbjct: 227 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 286
Query: 188 EVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ KR + A +R + LL ++DGF + +V V+ ATN LD A+L
Sbjct: 287 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-QPNTQVKVIAATNRVDILDPALLRS 345
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P+P+ + I +IH R + DV LA+
Sbjct: 346 GRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 386
>sp|P46470|PRS8_XENLA 26S PROTEASE REGULATORY SUBUNIT 8 (SUG1 HOMOLOG) (XSUG1)
>gi|1877414|emb|CAA57512.1| (X81986) XSUG1 [Xenopus
laevis]
Length = 461
Score = 122 bits (304), Expect = 5e-27
Identities = 89/285 (31%), Positives = 147/285 (51%), Gaps = 33/285 (11%)
Query: 91 TWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVAN 143
T+ IGGL + K I + I L + K P I P+G+LL+GPPGTGK+LLA AVA+
Sbjct: 142 TYEMIGGLDKQIKEIKEVIELPV-KHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAH 200
Query: 144 SLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMK---RVSLD 200
+ TF V S+L+ K+ GE ++++ LF +AR+ +PS+IF+DE+DS+ + D
Sbjct: 201 HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSRLEGGSGGD 260
Query: 201 DAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSA 258
+R + LL ++DGF+ K+ + V+ ATN LD A+L R+ +I P P+ +
Sbjct: 261 SEVQRTMLELLNQLDGFEATKN-IKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEAR 319
Query: 259 VEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELSDPLRVS 318
++I KIH R ++ ++ + SG E+ V A M L E
Sbjct: 320 LDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVH-------- 371
Query: 319 TLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFAI 363
+T +DF+ A+A++ ++ ++ + W F +
Sbjct: 372 -----------VTQEDFEMAVAKVMQKDSEKNMSIKKLWKCFFLV 405
>sp|O42587|PRSA_XENLA 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 6) (TBP-6)
>gi|2648047|emb|CAA71487.1| (Y10461) TBP6 protein
[Xenopus laevis]
Length = 405
Score = 122 bits (304), Expect = 5e-27
Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 17/221 (7%)
Query: 76 EYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLF 127
EY ++KA+ +R T ++DIGGL + + + +AI L + I+PP+G+L++
Sbjct: 151 EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 210
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA A A ATF + L+ + G+ +KL+ F+LA++ +PS+IFID
Sbjct: 211 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 270
Query: 188 EVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ KR + A +R + LL ++DGF+ +V V+ ATN LD A+L
Sbjct: 271 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNM-QVKVIAATNRVDILDPALLRS 329
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P+P+ + I +IH R + DV LA+
Sbjct: 330 GRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 370
>gi|11437005 proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Homo
sapiens]
Length = 423
Score = 122 bits (304), Expect = 5e-27
Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 17/221 (7%)
Query: 76 EYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLF 127
EY ++KA+ +R T ++DIGGL + + + +AI L + I+PP+G+L++
Sbjct: 151 EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 210
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA A A ATF + L+ + G+ +KL+ F+LA++ +PS+IFID
Sbjct: 211 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 270
Query: 188 EVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ KR + A +R + LL ++DGF + +V V+ ATN LD A+L
Sbjct: 271 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-QPNTQVKVIAATNRVDILDPALLRS 329
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P+P+ + I +IH R + DV LA+
Sbjct: 330 GRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 370
>gi|11465515 unknown; cell division protein [Cyanidium caldarium]
>gi|7446582|pir||T11990 cell division protein - red alga
(Cyanidium caldarium) chloroplast
>gi|2465738|gb|AAB82667.1| (AF022186) unknown; cell
division protein [Cyanidium caldarium]
Length = 614
Score = 122 bits (303), Expect = 6e-27
Identities = 82/251 (32%), Positives = 135/251 (53%), Gaps = 19/251 (7%)
Query: 78 FDKLKA---LIKRSTITWNDIGGLREAKKLIAQAIGL-----SIAKSPIEPPQGILLFGP 129
F K KA + ++ I + D+ G+ EAK+ + + + P+G+LL GP
Sbjct: 153 FGKAKARFHMEAKTGIVFEDVAGIEEAKEELQEIVAFLKDSRKFTNVGATIPKGVLLVGP 212
Query: 130 PGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEV 189
PGTGK+LLA A+A +A FFS+ S+ + + G + + LF A++ +P ++FIDE+
Sbjct: 213 PGTGKTLLAKAIAGEASAPFFSISGSEFVEMFVGVGASRVRDLFKKAKEKAPCIVFIDEI 272
Query: 190 DSLTMKR-VSL---DDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SR 243
D++ +R V + +D + + LL EMDGF VIV+ ATN LD A+L R
Sbjct: 273 DAVGRQRGVGIGGGNDEREQTLNQLLTEMDGF-SGDTGVIVVAATNRIDVLDSALLRPGR 331
Query: 244 LPIRIYVPLPDVNSAVEIFKIH--LRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATM 301
+I V LP++N + I K+H + IH DV L +A+ +SG ++AN++ A +
Sbjct: 332 FDRQIMVSLPNINGRLAILKVHSKKKKIHKDVLLEVIARRTPG--FSGADLANLLNEAAI 389
Query: 302 KMLEEMNPELS 312
+ E++
Sbjct: 390 LTVRRGKVEIT 400
>gi|6679503 proteasome (prosome, macropain) 26S subunit, ATPase 3; Tat binding
protein 1 [Mus musculus] >gi|3510277|dbj|BAA32559.1|
(D49686) Tat binding protein-1 [Mus musculus]
>gi|10697242|dbj|BAB16347.1| (AB040858) proteasomal
ATPase [Mus musculus]
Length = 442
Score = 121 bits (301), Expect = 1e-26
Identities = 79/221 (35%), Positives = 127/221 (56%), Gaps = 17/221 (7%)
Query: 76 EYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLF 127
+Y ++KA+ +R T ++DIGGL + + + +AI L + I+PP+G+L++
Sbjct: 170 DYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 229
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA A A ATF + L+ + G+ +KL+ F+LA++ +PS+IFID
Sbjct: 230 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 289
Query: 188 EVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ KR + A +R + LL ++DGF + +V V+ ATN LD A+L
Sbjct: 290 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-QPNTQVKVIAATNRVDILDPALLRS 348
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P+P+ + I +IH R + DV LA+
Sbjct: 349 GRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR 389
>emb|CAB51029.1| (AJ243808) metalloprotease FtsH [Bradyrhizobium japonicum]
Length = 640
Score = 121 bits (301), Expect = 1e-26
Identities = 80/245 (32%), Positives = 131/245 (52%), Gaps = 19/245 (7%)
Query: 73 GKNEYFDKLKALI---KRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEP-----PQGI 124
GK F K +A + +T+ D+ G+ EAK+ + + + + P+G+
Sbjct: 133 GKAMGFGKSRAKMLTEAHGRVTFEDVAGVDEAKQDLQEIVEFLRDPGKFQRLGGRIPRGV 192
Query: 125 LLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVI 184
LL GPPGTGK+L+A AVA N FF++ SD + + G + + +F A++ +P +I
Sbjct: 193 LLVGPPGTGKTLIARAVAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCII 252
Query: 185 FIDEVDSLTMKRVS----LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM 240
FIDE+D++ R + +D + + LL EMDGF E + VI++ ATN P LD A+
Sbjct: 253 FIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGF-EANEGVILIAATNRPDVLDPAL 311
Query: 241 L--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHY--DVPLSRLAKEAVKRLYSGREIANVV 296
L R ++ VP PDV +I K+H+R + D+ L +A+ +SG ++ N+V
Sbjct: 312 LRPGRFDRQVVVPNPDVVGREQILKVHVRKVPLAPDINLKTIARGTPG--FSGADLMNLV 369
Query: 297 KLATM 301
A +
Sbjct: 370 NEAAL 374
>sp|P71377|FTH1_HAEIN CELL DIVISION PROTEIN FTSH HOMOLOG 1 >gi|1574793|gb|AAC22979.1|
(U32812) cell division protein (ftsH) [Haemophilus
influenzae Rd]
Length = 635
Score = 120 bits (299), Expect = 2e-26
Identities = 81/245 (33%), Positives = 128/245 (52%), Gaps = 19/245 (7%)
Query: 73 GKNEYFDKLKALIKRST---ITWNDIGGLREAKKLIAQAIGLSIAKSPIEP-----PQGI 124
GK F K +A + +T+ D+ G EAK+ + + + + + P+GI
Sbjct: 128 GKAMSFGKSRAKMLNQDQIKVTFADVAGCDEAKEEVGEIVDFLRDPNKFQNLGGKIPKGI 187
Query: 125 LLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVI 184
L+ GPPGTGK+LLA A+A FF++ SD + + G + + +F A++ +P +I
Sbjct: 188 LMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCLI 247
Query: 185 FIDEVDSLTMKRVS----LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM 240
FIDE+D++ +R + D + + +L EMDGF D VIV+ ATN P LD A+
Sbjct: 248 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-SGNDGVIVIAATNRPDVLDPAL 306
Query: 241 L--SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVV 296
R ++ V LPDV +I K+H+R + DV LA+ YSG ++AN+V
Sbjct: 307 TRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPG--YSGADLANLV 364
Query: 297 KLATM 301
A +
Sbjct: 365 NEAAL 369
>gb|AAB60775.1| (AC000375) Similar to Xenopus TER ATPase (gb|X54240). [Arabidopsis
thaliana]
Length = 330
Score = 120 bits (299), Expect = 2e-26
Identities = 81/246 (32%), Positives = 132/246 (52%), Gaps = 26/246 (10%)
Query: 119 EPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQ 178
+P GILLFGP GTGK++LA AVA A ++ +S++F E K + A+FSLA +
Sbjct: 93 QPCNGILLFGPSGTGKTMLAKAVATEAGANLINMS----MSRWFSEGEKYVKAVFSLASK 148
Query: 179 LSPSVIFIDEVDSLTMKRVSLDDAARRMIGTLLAEMDGFK-ERKDKVIVLTATNAPWDLD 237
+SPS+IF+DEV+S+ + R L + + DG + K++V+VL ATN P+DLD
Sbjct: 149 ISPSIIFLDEVESM-LHRYRL-----KTKNEFIINWDGLRTNEKERVLVLAATNRPFDLD 202
Query: 238 EAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVK 297
EA++ RLP R+ V LPD S +I K+ L+KE + + E+A++
Sbjct: 203 EAVIRRLPHRLMVGLPDARSRSKILKV------------ILSKEDLSPDFDIDEVASMTN 250
Query: 298 LATMKMLEEMNPELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVK--KYE 355
+ L+E + +++ RV R L ++DF+ A+ + I+ V
Sbjct: 251 GYSGNDLKERDAAVAEG-RVPPAGSGGSDLRVLKMEDFRNALELVSMSISSKSVNMTALR 309
Query: 356 RWAKEF 361
+W +++
Sbjct: 310 QWNEDY 315
>pir||D75502 cell division protein FtsH - Deinococcus radiodurans (strain R1)
>gi|6458277|gb|AAF10160.1|AE001916_6 (AE001916) cell
division protein FtsH [Deinococcus radiodurans]
Length = 618
Score = 120 bits (299), Expect = 2e-26
Identities = 82/226 (36%), Positives = 118/226 (51%), Gaps = 22/226 (9%)
Query: 67 VRKRREGKNEY---FDKLKALI---KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP--- 117
VR R G N+ F K KA I + +T+ D+ G EAK+ + + + + P
Sbjct: 122 VRSRNGGNNDAASSFGKSKAAIISEGQIKLTFADVAGCDEAKQDLQEVV--EFLRQPEKY 179
Query: 118 ----IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALF 173
P+G+LL GPPG+GK+LLA AVA +FS+ SD + + G + + LF
Sbjct: 180 HQLGARIPRGVLLVGPPGSGKTLLAKAVAGEAKVPYFSISGSDFVEMFVGVGAARVRDLF 239
Query: 174 SLARQLSPSVIFIDEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTA 229
AR+ SP ++FIDE+D++ KR +D + + LL EMDGF +D VI+L A
Sbjct: 240 EQARKASPCIVFIDEIDAVGRKRGMNIQGGNDEREQTLNQLLVEMDGFGSGQD-VIILAA 298
Query: 230 TNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDV 273
TN P LD A+L R ++ V PDV +I +IH R DV
Sbjct: 299 TNRPDVLDAALLRPGRFDRQVVVDAPDVRGREQILRIHSRKKPLDV 344
>pir||T33155 hypothetical protein F56H1.4 - Caenorhabditis elegans
>gi|3193161|gb|AAC19196.1| (AF067618) contains
similarity to the AAA family of ATPases (Pfam; AAA,
score; 259.07); most similar to human probable 26S
protease subunit TBP-1 (SW:P17980) [Caenorhabditis
elegans]
Length = 430
Score = 120 bits (297), Expect = 3e-26
Identities = 75/221 (33%), Positives = 128/221 (56%), Gaps = 17/221 (7%)
Query: 76 EYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLF 127
EY ++KA+ +R T ++DIGG + + + +A+ L + I PP+G+L++
Sbjct: 158 EYDSRVKAMEVDERPTEQYSDIGGCDKQIQELIEAVVLPMTHKDRFVNLGIHPPKGVLMY 217
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+++A AVA +TF + L+ + G+ +KL+ F+LA++ +P++IFID
Sbjct: 218 GPPGTGKTMMARAVAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFID 277
Query: 188 EVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ KR + A +R + LL ++DGF + D + V+ ATN LD A+L
Sbjct: 278 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-QPNDDIKVIAATNRIDVLDPALLRS 336
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I +P P+ ++ I +IH R ++ DV LA+
Sbjct: 337 GRLDRKIELPHPNEDARARIMQIHSRKMNVNKDVNFEELAR 377
>gb|AAD25809.1|AC006550_17 (AC006550) Belongs to PF|00004 ATPases associated with various
cellular activities. [Arabidopsis thaliana]
Length = 983
Score = 119 bits (295), Expect = 6e-26
Identities = 89/296 (30%), Positives = 143/296 (48%), Gaps = 30/296 (10%)
Query: 86 KRSTITWNDIGGLREAKKLIAQAIGLSIA-----KSPIEPPQGILLFGPPGTGKSLLASA 140
K + W+D+GGL + K I + L + S + G+LL+GPPGTGK+LLA A
Sbjct: 693 KVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKA 752
Query: 141 VANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD 200
VA + F SVK +L++ Y GES K + +F AR P VIF DE+DSL R +
Sbjct: 753 VATECSLNFLSVKGPELINMYIGESEKNVRDIFEKARSARPCVIFFDELDSLAPARGASG 812
Query: 201 DAA---RRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPL-PD 254
D+ R++ +LAE+DG + + ++ A+N P +D A+L R +YV + D
Sbjct: 813 DSGGVMDRVVSQMLAEIDGLSDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNAD 872
Query: 255 VNSAVEIFKIHLR--GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELS 312
+ + K R + DV L +AK+ ++G ++ + A + +
Sbjct: 873 ASYRERVLKALTRKFKLSEDVSLYSVAKKC-PSTFTGADMYALCADAWFQAAKR------ 925
Query: 313 DPLRVSTLKGRDLTTRPLTLD-------DFKYAMARIKSPITKSDVKKYERWAKEF 361
+VS D+ T D DF AM ++ ++ +++KKYE +F
Sbjct: 926 ---KVSKSDSGDMPTEEDDPDSVVVEYVDFIKAMDQLSPSLSITELKKYEMLRDQF 978
>gb|AAD52812.1|AF129874_1 (AF129874) peroxin-6 [Pichia angusta]
Length = 1135
Score = 118 bits (294), Expect = 7e-26
Identities = 91/252 (36%), Positives = 130/252 (51%), Gaps = 22/252 (8%)
Query: 72 EGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGIL 125
+ +N++ D + A + + W D+GGL K I I + + K P ++ GIL
Sbjct: 793 DARNKFSDMIGAP-RIPDVKWEDVGGLDVVKDEILDTIEMPL-KHPELFSKGMKKRSGIL 850
Query: 126 LFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIF 185
+GPPGTGK+LLA A+A + FFSVK +LL+ Y GES + +F AR P VIF
Sbjct: 851 FYGPPGTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIF 910
Query: 186 IDEVDSLTMKRVSLDDAA---RRMIGTLLAEMDGFK--ERKDKVIVLTATNAPWDLDEAM 240
DE+DS+ KR + D+ R++ LLAE+DG E D V V+ ATN P LDEA+
Sbjct: 911 FDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEAL 970
Query: 241 L--SRLPIRIYVPLPDVN-SAVEIFKIHLRGIHYD--VPLSRLAKEAVKRLYSGREIANV 295
L R +Y+ + D + +I + R D V L R+A E Y+G A+
Sbjct: 971 LRPGRFDKMLYLGIADTHEKQAKIIQALTRKFQLDPSVDLGRIA-ETCPFTYTG---ADF 1026
Query: 296 VKLATMKMLEEM 307
L + ML M
Sbjct: 1027 YALCSDAMLNAM 1038
>gi|11465793 hypothetical chloroplast ORF 25. [Porphyra purpurea]
>gi|1706926|sp|P51327|FTSH_PORPU CELL DIVISION PROTEIN
FTSH HOMOLOG >gi|2147534|pir||S73248 hypothetical
protein 25 - red alga (Porphyra purpurea) chloroplast
>gi|1276793|gb|AAC08213.1| (U38804) hypothetical
chloroplast ORF 25. [Porphyra purpurea]
Length = 628
Score = 118 bits (293), Expect = 1e-25
Identities = 77/246 (31%), Positives = 131/246 (52%), Gaps = 21/246 (8%)
Query: 73 GKNEYFDKLKALIK---RSTITWNDIGGLREAKKLIAQAIGL-----SIAKSPIEPPQGI 124
G+ F K KAL + ++ + +ND+ G+ EAK+ + + S + P+G+
Sbjct: 150 GQAMSFGKSKALFQMEAKTGVVFNDVAGVEEAKEEFQEVVTFLKQPESFTAVGAKIPKGV 209
Query: 125 LLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVI 184
LL GPPGTGK+LLA A+A FFS+ S+ + + G + + LF A+ +P ++
Sbjct: 210 LLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIV 269
Query: 185 FIDEVDSLTMKRVS----LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAM 240
FIDE+D++ +R + +D + + LL EMDGF E VIV+ ATN LD A+
Sbjct: 270 FIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGF-EGNTGVIVIAATNRADILDSAL 328
Query: 241 L--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRL---YSGREIANV 295
L R ++ V +PD + I ++H + + S+++ E + R +SG ++AN+
Sbjct: 329 LRPGRFDRQVSVDVPDFRGRLAILEVHAKNKKME---SKVSLETIARRTPGFSGADLANL 385
Query: 296 VKLATM 301
+ A +
Sbjct: 386 LNEAAI 391
>pir||T44596 26S proteasome regulatory complex chain p50 [imported] - fruit fly
(Drosophila melanogaster)
>gi|5679018|gb|AAD46823.1|AF160882_1 (AF160882)
BcDNA.GH12068 [Drosophila melanogaster]
>gi|6434948|gb|AAF08386.1|AF145305_1 (AF145305) 26S
proteasome regulatory complex subunit p50 [Drosophila
melanogaster] >gi|7301041|gb|AAF56177.1| (AE003744) Rpt5
gene product [Drosophila melanogaster]
Length = 428
Score = 118 bits (293), Expect = 1e-25
Identities = 77/221 (34%), Positives = 124/221 (55%), Gaps = 17/221 (7%)
Query: 76 EYFDKLKALI--KRSTITWNDIGGLREAKKLIAQAIGLSIAKSP------IEPPQGILLF 127
EY ++KA+ +R T ++DIGGL + + + +A+ L + I PP+G+LL+
Sbjct: 156 EYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEKFKNLGIHPPKGVLLY 215
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
GPPGTGK+LLA A A +TF + L+ + G+ +KL+ F+LA++ +P++IFID
Sbjct: 216 GPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFID 275
Query: 188 EVDSLTMKRVSLDDA----ARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML-- 241
E+D++ KR + A +R + LL ++DGF D + V+ ATN LD A+L
Sbjct: 276 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTAD-IKVIAATNRVDILDPALLRS 334
Query: 242 SRLPIRIYVPLPDVNSAVEIFKIHLR--GIHYDVPLSRLAK 280
RL +I P P+ + I +IH R + DV L++
Sbjct: 335 GRLDRKIEFPHPNEEARARIMQIHSRKMNVSNDVNFEELSR 375
>sp|P73179|FTH2_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 2 >gi|7446575|pir||S75291 cell
division protein ftsH-3 - Synechocystis sp. (strain PCC
6803) >gi|1652282|dbj|BAA17205.1| (D90904) cell division
protein FtsH [Synechocystis sp.]
Length = 665
Score = 118 bits (292), Expect = 1e-25
Identities = 79/247 (31%), Positives = 133/247 (52%), Gaps = 23/247 (9%)
Query: 73 GKNEYFDKLKALIK---RSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQ 122
G+ F K KA + ++ + ++D+ G+ EAK+ + + + + K P + P+
Sbjct: 188 GQAMSFGKSKARFQMEAKTGVGFDDVAGIDEAKEELQEVV--TFLKQPEKFTAIGAKIPR 245
Query: 123 GILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPS 182
G+LL GPPGTGK+LLA A+A FFS+ S+ + + G + + LF A++ +P
Sbjct: 246 GVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPC 305
Query: 183 VIFIDEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDE 238
++FIDE+D++ +R +D + + LL EMDGF E +IV+ ATN P LD
Sbjct: 306 LVFIDEIDAVGRQRGVGYGGGNDEREQTLNQLLTEMDGF-EGNSGIIVIAATNRPDVLDL 364
Query: 239 AML--SRLPIRIYVPLPDVNSAVEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIAN 294
A+L R ++ V PDV I IH + +H +V L+ +A+ ++G ++AN
Sbjct: 365 ALLRPGRFDRQVTVDYPDVQGRELILAIHAQNKKLHEEVQLAAIARRTPG--FTGADLAN 422
Query: 295 VVKLATM 301
V+ A +
Sbjct: 423 VLNEAAI 429
>sp|Q55700|FTH1_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 1 >gi|7446577|pir||S76378 cell
division protein ftsH-1 - Synechocystis sp. (strain PCC
6803) >gi|1001602|dbj|BAA10230.1| (D64000) cell division
protein FtsH [Synechocystis sp.]
Length = 627
Score = 116 bits (289), Expect = 3e-25
Identities = 76/247 (30%), Positives = 134/247 (53%), Gaps = 23/247 (9%)
Query: 73 GKNEYFDKLKALIK---RSTITWNDIGGLREAKKLIAQAIGLSIAKSP-------IEPPQ 122
G+ F K KA + ++ + ++D+ G+ EAK+ + + + + K P + P+
Sbjct: 149 GQAMNFGKSKARFQMDAKTGVMFDDVAGIDEAKEELQEVV--TFLKQPERFTAVGAKIPK 206
Query: 123 GILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPS 182
G+LL GPPGTGK+LLA A+A FFS+ S+ + + G + + LF A++ +P
Sbjct: 207 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPC 266
Query: 183 VIFIDEVDSLTMKRVS----LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDE 238
+IFIDE+D++ +R + +D + + LL EMDGF E +I++ ATN P LD
Sbjct: 267 LIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF-EGNTGIIIIAATNRPDVLDS 325
Query: 239 AML--SRLPIRIYVPLPDVNSAVEIFKIHLRG--IHYDVPLSRLAKEAVKRLYSGREIAN 294
A++ R ++ V PD + EI ++H R + +V + +A+ +SG ++AN
Sbjct: 326 ALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPG--FSGADLAN 383
Query: 295 VVKLATM 301
++ A +
Sbjct: 384 LLNEAAI 390
>pir||T00863 hypothetical protein F17K2.3 - Arabidopsis thaliana
>gi|2979543|gb|AAC06152.1| (AC003680) hypothetical
protein [Arabidopsis thaliana]
Length = 481
Score = 116 bits (289), Expect = 3e-25
Identities = 93/313 (29%), Positives = 149/313 (46%), Gaps = 53/313 (16%)
Query: 2 YRLQLLQVQKCQEEFERALSLGHYDKARLIAL-------RCAELLRKIASENLSLSHILL 54
YR ++ Q E +AL +G + R +A A RK S+ ++ +
Sbjct: 112 YREKISNWQNQVSERLQALGVGMSENKRTVAYPSSASVSSTASRYRKTLSQKTPVARGGV 171
Query: 55 EEAKKWEEKAKNVRKRREGKNEYFDKLKALIKRS------TITWNDIGGLREAKKLIAQA 108
+ ++ A + + +E N Y DKL +I + ++ W+D+ GL AK+ + +
Sbjct: 172 ATPRNPKDAAASPKPVKESGNVYDDKLVEMINTTIVDRSPSVKWDDVAGLNGAKQALLEM 231
Query: 109 IGLSIAKSPI-----EPPQ-----GILLFGPPGTGKSLLASAVANSLNATFFSVKASDLL 158
+ L + + P + G+LLFGPPG GK++LA AVA+ ATFF+V AS L
Sbjct: 232 VILPAKRRDLFTGLRRPARVTSLLGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 291
Query: 159 SKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAARRMIGTLLAEMDGFK 218
SK+ ID + ++ + S ++A+RR+ L + DG
Sbjct: 292 SKW------------------------IDSI--MSTRSTSENEASRRLKSEFLIQFDGVT 325
Query: 219 ERKDK-VIVLTATNAPWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHY---DVP 274
D VI++ ATN P +LD+A+L RL RIYVPLPD N +FK L+ + D
Sbjct: 326 SNPDDLVIIIGATNKPQELDDAVLRRLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSDGD 385
Query: 275 LSRLAKEAVKRLY 287
+ ++ KE +LY
Sbjct: 386 IDKIVKETEGKLY 398
>pir||D75448 cell division protein FtsH - Deinococcus radiodurans (strain R1)
>gi|6458747|gb|AAF10593.1|AE001953_7 (AE001953) cell
division protein FtsH [Deinococcus radiodurans]
Length = 655
Score = 116 bits (289), Expect = 3e-25
Identities = 78/223 (34%), Positives = 114/223 (50%), Gaps = 15/223 (6%)
Query: 65 KNVRKRREGKNEYFDKLKALI---KRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEP- 120
+++R G F K KA I + +T+ D+ G EAK+ + + +
Sbjct: 169 RSLRGNGGGGASSFAKSKAAIISEGQIKLTFADVAGCDEAKQDLQEVVDFLRQPEKYHQL 228
Query: 121 ----PQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLA 176
P G+LL GPPG+GK+LLA AVA +FS+ SD + + G + + LF A
Sbjct: 229 GARIPHGVLLVGPPGSGKTLLAKAVAGEAKVPYFSISGSDFVEMFVGVGAARVRDLFEQA 288
Query: 177 RQLSPSVIFIDEVDSLTMKR----VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNA 232
R+ SP ++FIDE+D++ KR +D + + LL EMDGF +D VI+L ATN
Sbjct: 289 RKSSPCIVFIDEIDAVGRKRGMNIQGGNDEREQTLNQLLVEMDGFGSGQD-VIILAATNR 347
Query: 233 PWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDV 273
P LD A+L R ++ V PDV +I +IH R DV
Sbjct: 348 PDVLDAALLRPGRFDRQVVVDAPDVRGREQILRIHSRKKPLDV 390
>sp|P54816|TBP7_CAEEL TAT-BINDING HOMOLOG 7 >gi|7498868|pir||T20739 hypothetical protein
F11A10.1 - Caenorhabditis elegans
>gi|4008355|emb|CAA92596.1| (Z68297) Similarity to Yeast
TAT-binding homolog 7 (SW:TBP7_YEAST), contains
similarity to Pfam domain: PF00004 (ATPases associated
with various cellular activities (AAA)), Score=294.7,
E-value=3.7e-85, N=1; PF00439 (Bromodomain), Score=99.1,
E-value=7> >gi|4008373|emb|CAA92684.1| (Z68316)
Similarity to Yeast TAT-binding homolog 7
(SW:TBP7_YEAST), contains similarity to Pfam domain:
PF00004 (ATPases associated with various cellular
activities (AAA)), Score=294.7, E-value=3.7e-85, N=1;
PF00439 (Bromodomain), Score=99.1, E-value=7>
Length = 1242
Score = 116 bits (287), Expect = 5e-25
Identities = 97/343 (28%), Positives = 159/343 (46%), Gaps = 35/343 (10%)
Query: 23 GHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLK 82
G ++ R + + E E S HIL++ R R+ + +
Sbjct: 339 GERERGRFMPINMTE------KELQSAQHILMD------------RMRKTDAGQGASDID 380
Query: 83 ALIKRSTITWNDIGGLREAKKLIAQAIGLSIA------KSPIEPPQGILLFGPPGTGKSL 136
+ S++ ++ +GGL + + + + + K I PP+G++ +GPPGTGK+L
Sbjct: 381 PMSVDSSVGFDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINPPKGVVFYGPPGTGKTL 440
Query: 137 LASAVANSLN-----ATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDS 191
+A A+AN FF K +D LSK+ GES + + LF A + PS+IF DE+D
Sbjct: 441 VARALANECRRGANKVAFFMRKGADCLSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDG 500
Query: 192 LTMKRVSLDDAAR-RMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRI 248
L R S D ++ TLLA MDG + + +V+V+ ATN LD A+ R +
Sbjct: 501 LAPVRSSKQDQIHASIVSTLLALMDGL-DGRGEVVVIGATNRLDTLDPALRRPGRFDREL 559
Query: 249 YVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMN 308
LPD+N+ +I IH + P+ +A+ SG A++ L T +L +
Sbjct: 560 RFSLPDLNARRQILDIHTSKWEENKPIPE-TLDAIAERTSGYCGADLKFLCTEAVLIGLR 618
Query: 309 PELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDV 351
S D+ T +T + F +AM RI +P ++ D+
Sbjct: 619 SRYPHIYMCSERLKLDVATIKITSEHFGHAMRRI-TPASRRDL 660
>gb|AAF58736.1| (AE003828) CG11919 gene product [Drosophila melanogaster]
Length = 897
Score = 116 bits (287), Expect = 5e-25
Identities = 99/354 (27%), Positives = 167/354 (46%), Gaps = 39/354 (11%)
Query: 25 YDKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLKAL 84
YD A + +R ++ L +SH AKN+ + ++ + D L A
Sbjct: 568 YDNAVRMKIR-----NRLGRTTLDMSHF-----------AKNLT---DMQSSFADSLGAP 608
Query: 85 IKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIEPPQ----GILLFGPPGTGKSLLASA 140
K + W+DIGGL + K I +IGL + + GILL+GPPGTGK+L+A A
Sbjct: 609 -KVPKVYWSDIGGLAKLKDEIQSSIGLPLKHVHLMGKNLRRSGILLYGPPGTGKTLVAKA 667
Query: 141 VANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD 200
VA N +F SV+ +LL+ Y G+S + + +FS AR +P V+F+DE+DSL R
Sbjct: 668 VATECNLSFLSVQGPELLNMYVGQSEQNVREVFSRARSAAPCVLFLDELDSLAPNRGVAG 727
Query: 201 DAA---RRMIGTLLAEMDGFK--ERKDKVIVLTATNAPWDLDEAML--SRLPIRIYV-PL 252
D+ R++ LLAEMDG + + +L ATN P +D A+L R YV P
Sbjct: 728 DSGGVMDRVVSQLLAEMDGMSDGDTSKPIFILAATNRPDLIDPALLRPGRFDKLFYVGPC 787
Query: 253 PDVNSAVEIFKIHLRGIHYD--VPLSRLAKEAVKRLYSGREIANVVKLATMKMLEE-MNP 309
+ + + D V + ++A E +K SG ++ ++ A + + ++
Sbjct: 788 STAEDKAAVLRAQTQRFALDAGVDMEQIA-ERLKSEMSGADLYSICSNAWLSAVRRTIDG 846
Query: 310 ELSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKKYERWAKEFAI 363
LS + L ++ + +DF + + I+ D++ + +++
Sbjct: 847 HLSGTISEKELVPENVIVQE---EDFTKSFNKFVPSISAKDLEYFNNLKASYSV 897
>sp|P94304|FTSH_BACFI CELL DIVISION PROTEIN FTSH HOMOLOG >gi|1813473|gb|AAB41679.1|
(U61844) cell division protein [Bacillus firmus]
Length = 679
Score = 115 bits (286), Expect = 6e-25
Identities = 87/268 (32%), Positives = 132/268 (48%), Gaps = 28/268 (10%)
Query: 49 LSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQA 108
L LL +A+ + N K + K DK KA K D+ G E K+ + +
Sbjct: 130 LFFFLLSQAQGGGSRVMNFGKSK-AKMVNEDKKKAKFK-------DVAGADEEKQELVEV 181
Query: 109 IGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKY 161
+ K P P+G+LL GPPGTGK+LLA AVA FFS+ SD + +
Sbjct: 182 V--EFLKDPRKFSAIGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMF 239
Query: 162 FGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS----LDDAARRMIGTLLAEMDGF 217
G + + LF A++ +P +IFIDE+D++ +R + D + + LL EMDGF
Sbjct: 240 VGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGF 299
Query: 218 KERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRG--IHYDV 273
+ +I++ ATN LD A+L R +I V PDVN E+ K+H R ++ DV
Sbjct: 300 -SANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDV 358
Query: 274 PLSRLAKEAVKRLYSGREIANVVKLATM 301
L +A +SG ++ N++ A +
Sbjct: 359 NLKTIATRTPG--FSGADLENLLNEAAL 384
>sp|P36966|PEX6_YARLI PEROXISOME BIOSYNTHESIS PROTEIN PAY4 (PEROXIN-6)
>gi|1078611|pir||A53121 peroxisome assembly protein PAY4
- yeast (Yarrowia lipolytica) >gi|393291|gb|AAA16622.1|
(L23858) ATPase [Yarrowia lipolytica]
Length = 1025
Score = 115 bits (284), Expect = 1e-24
Identities = 81/243 (33%), Positives = 123/243 (50%), Gaps = 25/243 (10%)
Query: 33 LRCAELLRKIASEN--------LSLSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLKAL 84
LR + L K+ E L+LSH L+ + A + + +Y D + A
Sbjct: 658 LRAIDRLNKLTKERPIATLDDLLTLSHGTLQLTPSDFDDAI-----ADARQKYSDSIGAP 712
Query: 85 IKRSTITWNDIGGLREAKKLIAQAIGLSIA-----KSPIEPPQGILLFGPPGTGKSLLAS 139
+ + W+D+GG+ KK I I + ++ GIL +GPPGTGK+LLA
Sbjct: 713 -RIPNVGWDDVGGMEGVKKDILDTIETPLKYPHWFSDGVKKRSGILFYGPPGTGKTLLAK 771
Query: 140 AVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL 199
A+A + + FFSVK +LL+ Y GES + +F AR P V+F DE+DS+ +R +
Sbjct: 772 AIATTFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVVFFDELDSVAPQRRNQ 831
Query: 200 DDAA---RRMIGTLLAEMDGFKER-KDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLP 253
D+ R++ LLAE+DG + V V+ ATN P LDEA+L R +Y+ +
Sbjct: 832 GDSGGVMDRIVSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIS 891
Query: 254 DVN 256
D +
Sbjct: 892 DTH 894
>dbj|BAB00559.1| (AP001299) contains similarity to 26S proteasome subunit
4~gene_id:F4B12.4 [Arabidopsis thaliana]
Length = 1964
Score = 114 bits (283), Expect = 1e-24
Identities = 83/281 (29%), Positives = 135/281 (47%), Gaps = 29/281 (10%)
Query: 54 LEEAKKWEEKAKNVRK--RREGKNEYFDKLKALIK----------RSTITWNDIGGLREA 101
+E +KW EK + +RE K + D L+ + ++ W+ + GL
Sbjct: 678 VEAEEKWFEKCGEDEEFLKRESKRLHRDLLRVAPEYIGGSDSESGKAFEGWDSVAGLEGV 737
Query: 102 KKLIAQAIGLSIAKSP------IEPPQGILLFGPPGTGKSLLASAVANSL-----NATFF 150
+ + + + + + + PP+GILL G PGTGK+L+ A+ SL +F
Sbjct: 738 TQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVVRALIGSLARGNRRIAYF 797
Query: 151 SVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAAR-RMIGT 209
+ K +D L KY G++ + + LF +A + PS+IF DE+D L KR D ++ T
Sbjct: 798 ARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPKRSRQQDQTHSSVVST 857
Query: 210 LLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLR 267
LLA +DG K R V+V+ ATN P +D A+ R IY PLP V+ I +H R
Sbjct: 858 LLALLDGLKSR-GSVVVIGATNYPDAIDPALRRPGRFDREIYFPLPSVDDRAAIISLHTR 916
Query: 268 GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMN 308
+ P+S + + + +G A++ L T + +N
Sbjct: 917 --KWPKPVSGYLLKWIAKETAGFAGADIQALCTQAAMIALN 955
>sp|P42811|PRS2_METTM PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MTH1011
>gi|1076133|pir||S51137 ATP-dependent 26S proteinase
regulatory subunit 8 homolog - Methanobacterium
thermoautotrophicum (strain Marburg)
>gi|809719|emb|CAA58665.1| (X83691) gtg start point
[Methanobacterium thermoautotrophicum]
Length = 372
Score = 112 bits (277), Expect = 7e-24
Identities = 84/265 (31%), Positives = 135/265 (50%), Gaps = 15/265 (5%)
Query: 72 EGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGLSIAKSPIE----PPQGILLF 127
E + E F ++K S IT +D+ G +AK I I + + P P+ +L
Sbjct: 111 ENEREEFHEVK-----SDITMDDVIGQEDAK--IKCRIIMRYLEDPDRFRDWAPRNVLFH 163
Query: 128 GPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFID 187
G PGTGK++LA ++AN L + +KA+ L+ ++ G+ ++ I L+ LA + +PSVIFID
Sbjct: 164 GSPGTGKTMLAKSLANELRVPLYLIKATSLIGEHVGDGARQIHELYELASKTAPSVIFID 223
Query: 188 EVDSLTMKR--VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAMLSRLP 245
E+D++ + R SL ++ LL EMDG + V+ + ATN P LD A+ SR
Sbjct: 224 EMDAIGLDRRFQSLRGDVSEVVNALLTEMDGINQNWG-VVTIGATNNPELLDNAIRSRFE 282
Query: 246 IRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREI-ANVVKLATMKML 304
I LP + + + ++ + DV S + + SGR+I V+K A + L
Sbjct: 283 EEIEFKLPGDDERRMMLEKYIETMPLDVDFSVDKLVKLTKGMSGRDIKERVLKTALHRAL 342
Query: 305 EEMNPELSDPLRVSTLKGRDLTTRP 329
+ +P + LK RDL + P
Sbjct: 343 ADESPRVEREHIEYALKERDLKSEP 367
>pir||D70198 cell division protein (ftsH) homolog - Lyme disease spirochete
>gi|2688712|gb|AAC67120.1| (AE001177) cell division
protein (ftsH) [Borrelia burgdorferi]
Length = 639
Score = 111 bits (274), Expect = 2e-23
Identities = 80/244 (32%), Positives = 120/244 (48%), Gaps = 29/244 (11%)
Query: 66 NVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQAIGL-----SIAKSPIEP 120
N +K GKN+ IT+ D+ G E K+ + + + K +
Sbjct: 158 NAQKYEAGKNK-------------ITFKDVAGQEEVKQELREVVEFLKNPKKFEKIGAKI 204
Query: 121 PQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLS 180
P+G+LL G PGTGK+LLA AVA +FF + SD + + G + + LF AR+ S
Sbjct: 205 PKGVLLVGSPGTGKTLLAKAVAGEAGVSFFHMSGSDFVEMFVGVGASRVRDLFDNARKNS 264
Query: 181 PSVIFIDEVDSLTMKRVS----LDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDL 236
P +IFIDE+D++ R + D + + LL EMDGF + VIV+ ATN P L
Sbjct: 265 PCIIFIDELDAVGRSRGAGLGGGHDEREQTLNQLLVEMDGFGTHTN-VIVMAATNRPDVL 323
Query: 237 DEAML--SRLPIRIYVPLPDVNSAVEIFKIH--LRGIHYDVPLSRLAKEAVKRLYSGREI 292
D A+L R ++ V LPD+ I IH + D+ L +A+ SG ++
Sbjct: 324 DSALLRPGRFDRQVTVSLPDIKEREAILNIHSLKTKLSKDINLQVIARATPGA--SGADL 381
Query: 293 ANVV 296
AN++
Sbjct: 382 ANLI 385
>emb|CAB51031.1| (AJ243811) l(3)70Da [Drosophila melanogaster]
Length = 1006
Score = 111 bits (274), Expect = 2e-23
Identities = 87/258 (33%), Positives = 124/258 (47%), Gaps = 30/258 (11%)
Query: 116 SPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSL 175
SP+ G+LL+GPPGTGK+ L S +A S N SVK +LL+KY G+S + + LF+
Sbjct: 749 SPLRNQAGVLLYGPPGTGKTYLVSQLATSWNLRIISVKGPELLAKYIGQSEENVRNLFNR 808
Query: 176 ARQLSPSVIFIDEVDSLTMKR-VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPW 234
AR P V+F DE DSL KR R++ LL E+DG E V V+ AT+ P
Sbjct: 809 ARSARPCVLFFDEFDSLAPKRGHDSTGVTDRVVNQLLTELDGV-EGLQGVTVIAATSRPE 867
Query: 235 DLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYD--VPLSRLAKEAVKRLYSGR 290
LD A+L R+ + PLPD + V IF+ + D V A + Y+G
Sbjct: 868 LLDPALLRSGRIDRLVECPLPDAPARVRIFEALSSTLSLDECVDFDWFAGKTAN--YTGA 925
Query: 291 EIANVVKLATMKMLEEMNPELSDP--LRVSTLKGRDL-----TTRPLTLDDFKYAMARIK 343
+I +++ A M ++E + + +LK + L TTRP
Sbjct: 926 DIQSILTSANMAAVKEALAQFGHEKLAKKISLKQKHLIESFQTTRP-------------- 971
Query: 344 SPITKSDVKKYERWAKEF 361
++ SDV KY R F
Sbjct: 972 -SLSASDVAKYHRTYARF 988
>gb|AAF49760.1| (AE003536) l(3)70Da gene product [Drosophila melanogaster]
Length = 1006
Score = 111 bits (274), Expect = 2e-23
Identities = 87/258 (33%), Positives = 124/258 (47%), Gaps = 30/258 (11%)
Query: 116 SPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSL 175
SP+ G+LL+GPPGTGK+ L S +A S N SVK +LL+KY G+S + + LF+
Sbjct: 749 SPLRNQAGVLLYGPPGTGKTYLVSQLATSWNLRIISVKGPELLAKYIGQSEENVRNLFNR 808
Query: 176 ARQLSPSVIFIDEVDSLTMKR-VSLDDAARRMIGTLLAEMDGFKERKDKVIVLTATNAPW 234
AR P V+F DE DSL KR R++ LL E+DG E V V+ AT+ P
Sbjct: 809 ARSARPCVLFFDEFDSLAPKRGHDSTGVTDRVVNQLLTELDGV-EGLQGVTVIAATSRPE 867
Query: 235 DLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYD--VPLSRLAKEAVKRLYSGR 290
LD A+L R+ + PLPD + V IF+ + D V A + Y+G
Sbjct: 868 LLDPALLRSGRIDRLVECPLPDAPARVRIFEALSSTLSLDECVDFDWFAGKTAN--YTGA 925
Query: 291 EIANVVKLATMKMLEEMNPELSDP--LRVSTLKGRDL-----TTRPLTLDDFKYAMARIK 343
+I +++ A M ++E + + +LK + L TTRP
Sbjct: 926 DIQSILTSANMAAVKEALAQFGHEKLAKKISLKQKHLIESFQTTRP-------------- 971
Query: 344 SPITKSDVKKYERWAKEF 361
++ SDV KY R F
Sbjct: 972 -SLSASDVAKYHRTYARF 988
>dbj|BAB03804.1| (AP001507) cell-division protein (ATP-dependent Zn
metallopeptidase) [Bacillus halodurans]
Length = 657
Score = 110 bits (272), Expect = 3e-23
Identities = 86/279 (30%), Positives = 134/279 (47%), Gaps = 28/279 (10%)
Query: 49 LSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQA 108
L LL +A+ + N K + K DK KA K D+ G E K+ + +
Sbjct: 123 LFFFLLSQAQGGGSRVMNFGKSK-AKMVNEDKKKAKFK-------DVAGADEEKQELVEV 174
Query: 109 IGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKY 161
+ K P P+G+LL GPPGTGK+LLA AVA FFS+ SD + +
Sbjct: 175 V--EFLKDPRKFSAIGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMF 232
Query: 162 FGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVS----LDDAARRMIGTLLAEMDGF 217
G + + LF A++ +P +IFIDE+D++ +R + D + + LL EMDGF
Sbjct: 233 VGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGF 292
Query: 218 KERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHL--RGIHYDV 273
+ +I++ ATN LD A+L R +I V PDV E+ K+H + + DV
Sbjct: 293 -SANEGIIIIAATNRADILDPALLRPGRFDRQITVGRPDVKGREEVLKVHASNKPLADDV 351
Query: 274 PLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPELS 312
L +A +SG ++ N++ A + + ++S
Sbjct: 352 NLKTIATRTPG--FSGADLENLLNEAALVAARQDEKKIS 388
>gi|11498088 AAA superfamily ATPase [Archaeoglobus fulgidus]
>gi|7482915|pir||E69309 ATPase AAA homolog -
Archaeoglobus fulgidus >gi|2650149|gb|AAB90760.1|
(AE001071) AAA superfamily ATPase [Archaeoglobus
fulgidus]
Length = 409
Score = 105 bits (259), Expect = 9e-22
Identities = 97/320 (30%), Positives = 151/320 (46%), Gaps = 25/320 (7%)
Query: 16 FERALSLGHYDKA-RLIALRCAELLRKIAS-----ENLSLSHILLEEAKKW-------EE 62
F R L +D A + A R EL++K + +N + EEAKK +E
Sbjct: 71 FSRQYILTSFDLAVKWFASRGVELIKKNPALAYFYQNYDSLDVSYEEAKKANLPKHGDKE 130
Query: 63 KAKNVRKRREGKNEYFDKLKALIKRST----ITWNDIG----GLREAKKL-IAQAIGLSI 113
K + + E K+E + L + S + + ++ L E +K+ IA +
Sbjct: 131 WLKGLIEELEKKDETREMLSLVRVLSPEEIPVDFREVALSEEQLEEVRKIEIALEERSFL 190
Query: 114 AKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALF 173
K + +L GPPGTGK+ A A++ L VK S + S+Y GE+SK I +F
Sbjct: 191 RKIGLSDIGKLLFIGPPGTGKTTTARALSKKLYLPLLEVKLSMITSQYLGETSKNIEKIF 250
Query: 174 SLARQLSPSVIFIDEVDSLTMKRVSLDDAA-RRMIGTLLAEMDGFKERKDKVIVLTATNA 232
+AR +SP ++FIDE D + R S + AA +R + TLL +D +D V+++ ATN
Sbjct: 251 DIARMMSPCILFIDEFDYVAKMRTSDEHAAIKRAVNTLLKSIDDINLVEDGVLLIAATNH 310
Query: 233 PWDLDEAMLSRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREI 292
P LD A+ R I P P IF+I L I + + L +E ++G +I
Sbjct: 311 PSLLDPAVWRRFDKVIEFPEPAEAIRKRIFEIFLARIDGNFNIDELVRETDG--FTGADI 368
Query: 293 ANVVKLATMKMLEEMNPELS 312
VV+ A + L + EL+
Sbjct: 369 KLVVREAVLDALLQGRRELT 388
>dbj|BAA85441.1| (AP000616) EST D15969(C1695) corresponds to a region of the
predicted gene.; similar to valosin-containing protein
(U20213) [Oryza sativa]
Length = 781
Score = 104 bits (258), Expect = 1e-21
Identities = 92/279 (32%), Positives = 129/279 (45%), Gaps = 54/279 (19%)
Query: 45 ENLSLSHILLEEAKKWEEKAKNVRKRREGKNEYFDKLKALIKRSTITWNDIGGLREAKKL 104
E LS++ EEA K + + RREG + D +TW+D+GGL +K
Sbjct: 461 EGLSITMDDFEEATKMVQPSL----RREGFSSIPD----------VTWDDVGGLDSLRKE 506
Query: 105 IAQAIGLSIAKSPIE-------PPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDL 157
+ I + K P E G LLFGPPG GK+L+A AVA+ A F +K +L
Sbjct: 507 FDRYI-IRCIKQPEEYKTFGLNMQAGFLLFGPPGCGKTLIAKAVAHEAGANFIHIKGPEL 565
Query: 158 LSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLDDAARRMIGTLLAEMDGF 217
L+KY GES + +F A+ +P ++F DE LL E+DG
Sbjct: 566 LNKYVGESESEVRKIFIRAQTNTPCILFFDE---------------------LLIELDGA 604
Query: 218 KERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRG--IHYDV 273
ERK V V+ ATN +D+A L R + YVPLP + V I + R I V
Sbjct: 605 GERKG-VFVIGATNRIDVIDDAALRPGRFGKKHYVPLPGADERVSILRALARNKPISSSV 663
Query: 274 PLSRLAKEAVKRLYSGREIANV------VKLATMKMLEE 306
L LA+ + +G ++A++ V A M LEE
Sbjct: 664 DLGALARREECKNLTGADLASMEPMGHFVNEAAMAALEE 702
Score = 92.8 bits (227), Expect = 5e-18
Identities = 63/234 (26%), Positives = 115/234 (48%), Gaps = 25/234 (10%)
Query: 91 TWNDIGGLREAKKLIAQAIGLSIAKSPI------EPPQGILLFGPPGTGKSLLASAVANS 144
T++D+GG+ + + + + + + +P G+LL GPPG GK+ LA A+AN
Sbjct: 189 TFSDLGGMESVIEQLMMEVVVPLCHPEVPRWLGVKPVAGLLLHGPPGCGKTTLAHAIANE 248
Query: 145 LNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSLD-DAA 203
F+ + A +++S G S + I +LF A + +PS++FIDE+D++ KR +L +
Sbjct: 249 TGVPFYKISAPEVVSGVSGASEENIRSLFKKAYRTAPSIVFIDEIDAIASKRENLQREME 308
Query: 204 RRMIGTLLAEMDGF----------------KERKDKVIVLTATNAPWDLDEAML--SRLP 245
RR++ L+ MD + +++ VIV+ ATN P +D+A+ R
Sbjct: 309 RRIVTQLMTCMDEYHQQIGSGSGDVGSESAEKKPGYVIVIGATNRPDAVDQALRRPGRFD 368
Query: 246 IRIYVPLPDVNSAVEIFKIHLRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLA 299
I + +PD + +I + R + + L L + G ++ +V A
Sbjct: 369 REISLGVPDEYARKKILMMLTRNLRLEGQLDLLKIARATSSFVGADLKALVDKA 422
>sp|P46509|YL15_MYCLE PUTATIVE AAA-FAMILY ATPASE MLCB2533.12/A2126A
>gi|2145850|pir||S72845 H+-transporting ATP synthase (EC
3.6.1.34) - Mycobacterium leprae
>gi|467000|gb|AAA17185.1| (U00017) a2126a; B2126_C1_167
[Mycobacterium leprae] >gi|4200269|emb|CAA22926.1|
(AL035310) putative ATPase MLCB2533.12 [Mycobacterium
leprae]
Length = 609
Score = 104 bits (257), Expect = 2e-21
Identities = 86/293 (29%), Positives = 141/293 (47%), Gaps = 56/293 (19%)
Query: 18 RALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRREGKNEY 77
RAL +GH D+ R++ L + +ENL L+ RK R G +
Sbjct: 173 RALVVGHADEERIVCLA-----EPLVAENL------LDGVPGALNDDSRPRKLRPGDSLL 221
Query: 78 FD-------------KLKALIKRST--ITWNDIGGLREAKKLIAQAIGLSIAKSPI---- 118
D +++ L+ +++ DIGGL + I A+ L +
Sbjct: 222 VDPKAGYAFERVPKAEVEDLVLEEVPDVSYQDIGGLTRQIEQIRDAVELPFLHKELYREY 281
Query: 119 --EPPQGILLFGPPGTGKSLLASAVANSL---------------NATFFSVKASDLLSKY 161
PP+G+LL+GPPG GK+L+A AVANSL + F ++K +LL+K+
Sbjct: 282 ALRPPKGVLLYGPPGCGKTLIAKAVANSLAKKMAEVRGDDAREAKSYFLNIKGPELLNKF 341
Query: 162 FGESSKLISALFSLARQL----SPSVIFIDEVDSLTMKRVS--LDDAARRMIGTLLAEMD 215
GE+ + I +F AR+ +P ++F DE+DS+ R + D ++ LL+E+D
Sbjct: 342 VGETERHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTRGTGVSSDVETTVVPQLLSEID 401
Query: 216 GFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHL 266
G E + VIV+ A+N +D A+L RL ++I + PD +A +I+ +L
Sbjct: 402 GV-EGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDIYSKYL 453
>gi|4507173 paraplegin [Homo sapiens] >gi|3273089|emb|CAA76314.1| (Y16610)
paraplegin [Homo sapiens]
Length = 795
Score = 102 bits (251), Expect = 8e-21
Identities = 92/335 (27%), Positives = 153/335 (45%), Gaps = 39/335 (11%)
Query: 1 MYRLQLLQVQKCQEEFERA---LSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEA 57
MYR+Q+ + K +E+ A L++ D+ + R + S ++ + +
Sbjct: 211 MYRMQVANIDKFEEKLRAAEDELNIEAKDRIPVSYKRTGFFGNALYSVGMTAVGLAI--- 267
Query: 58 KKWEEKAKNVRKRREGKNEYFDKLKALIKRSTI---------TWNDIGGLREAKKLIAQA 108
W REG F++LK + R TI ++ D+ G+ EAK + +
Sbjct: 268 -LWYVFRLAGMTGREGGFSAFNQLK--MARFTIVDGKMGKGVSFKDVAGMHEAKLEVREF 324
Query: 109 IGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKY 161
+ KSP + P+G LL GPPG GK+LLA AVA F ++ + +
Sbjct: 325 V--DYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVI 382
Query: 162 FGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-----DDAARRMIGTLLAEMDG 216
G + + +LF AR +P +++IDE+D++ KR + + + + LL EMDG
Sbjct: 383 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 442
Query: 217 FKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVP 274
D VIVL +TN LD A++ RL +++ LP + EIF+ HL+ +
Sbjct: 443 M-GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQ 500
Query: 275 LSRLAKEAVKRL---YSGREIANVVKLATMKMLEE 306
S + + L +SG +IAN+ A + E
Sbjct: 501 SSTFYSQRLAELTPGFSGADIANICNEAALHAARE 535
>gb|AAD28099.1| (AF080525) paraplegin [Homo sapiens]
Length = 795
Score = 102 bits (251), Expect = 8e-21
Identities = 92/335 (27%), Positives = 153/335 (45%), Gaps = 39/335 (11%)
Query: 1 MYRLQLLQVQKCQEEFERA---LSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEA 57
MYR+Q+ + K +E+ A L++ D+ + R + S ++ + +
Sbjct: 211 MYRMQVANIDKFEEKLRAAEDELNIEAKDRIPVSYKRTGFFGNALYSVGMTAVGLAI--- 267
Query: 58 KKWEEKAKNVRKRREGKNEYFDKLKALIKRSTI---------TWNDIGGLREAKKLIAQA 108
W REG F++LK + R TI ++ D+ G+ EAK + +
Sbjct: 268 -LWYVFRLAGMTGREGGFSAFNQLK--MARFTIVDGKMGKGVSFKDVAGMHEAKLEVREF 324
Query: 109 IGLSIAKSP-------IEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDLLSKY 161
+ KSP + P+G LL GPPG GK+LLA AVA F ++ + +
Sbjct: 325 V--DYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVI 382
Query: 162 FGESSKLISALFSLARQLSPSVIFIDEVDSLTMKRVSL-----DDAARRMIGTLLAEMDG 216
G + + +LF AR +P +++IDE+D++ KR + + + + LL EMDG
Sbjct: 383 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 442
Query: 217 FKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLRGIHYDVP 274
D VIVL +TN LD A++ RL +++ LP + EIF+ HL+ +
Sbjct: 443 M-GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQ 500
Query: 275 LSRLAKEAVKRL---YSGREIANVVKLATMKMLEE 306
S + + L +SG +IAN+ A + E
Sbjct: 501 SSTFYSQRLAELTPGFSGADIANICNEAALHAARE 535
>pir||G01234 N-ethylmaleimide-sensitive factor - human (fragment)
>gi|467977|gb|AAA17411.1| (U03985)
N-ethylmaleimide-sensitive factor [Homo sapiens]
Length = 751
Score = 92.8 bits (227), Expect = 5e-18
Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 37/269 (13%)
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKRSTITWN----DIGGL-REAKKLIAQAIGLSIAKS 116
EKA+N GK + + +++I WN IGGL +E + +A +
Sbjct: 193 EKAENSSLNLIGKAKTKENRQSIINPD---WNFEKMGIGGLDKEFSDIFRRAFAFRVFPP 249
Query: 117 PIEPP------QGILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYFGESSKLI 169
I +GILL+GPPG GK+LLA + LNA V ++L+KY GES I
Sbjct: 250 EIVEQMGCIHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANI 309
Query: 170 SALFSLA----RQLSPS----VIFIDEVDSLTMKRVSLDDAA---RRMIGTLLAEMDGFK 218
LF+ A R+L + +I DE+D++ +R S+ + ++ LL+++DG
Sbjct: 310 RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGV- 368
Query: 219 ERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIH---LRG---IH 270
E+ + ++V+ TN P +DEA+L RL +++ + LPD ++I IH +RG +
Sbjct: 369 EQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLS 428
Query: 271 YDVPLSRLAKEAVKRLYSGREIANVVKLA 299
DV + LA E + +SG E+ +V+ A
Sbjct: 429 ADVDIKELAVET--KNFSGAELEGLVRAA 455
>gi|11079228 N-ethylmaleimide-sensitive factor [Homo sapiens]
>gi|1171773|sp|P46459|NSF_HUMAN VESICULAR-FUSION PROTEIN
NSF (N-ETHYLMALEIMIDE-SENSITIVE FUSION PROTEIN)
(NEM-SENSITIVE FUSION PROTEIN)
>gi|7920147|gb|AAF70545.1|AF135168_1 (AF135168)
N-ethylmaleimide-sensitive factor [Homo sapiens]
Length = 744
Score = 92.8 bits (227), Expect = 5e-18
Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 37/269 (13%)
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKRSTITWN----DIGGL-REAKKLIAQAIGLSIAKS 116
EKA+N GK + + +++I WN IGGL +E + +A +
Sbjct: 186 EKAENSSLNLIGKAKTKENRQSIINPD---WNFEKMGIGGLDKEFSDIFRRAFAFRVFPP 242
Query: 117 PIEPP------QGILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYFGESSKLI 169
I +GILL+GPPG GK+LLA + LNA V ++L+KY GES I
Sbjct: 243 EIVEQMGCIHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANI 302
Query: 170 SALFSLA----RQLSPS----VIFIDEVDSLTMKRVSLDDAA---RRMIGTLLAEMDGFK 218
LF+ A R+L + +I DE+D++ +R S+ + ++ LL+++DG
Sbjct: 303 RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGV- 361
Query: 219 ERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIH---LRG---IH 270
E+ + ++V+ TN P +DEA+L RL +++ + LPD ++I IH +RG +
Sbjct: 362 EQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLS 421
Query: 271 YDVPLSRLAKEAVKRLYSGREIANVVKLA 299
DV + LA E + +SG E+ +V+ A
Sbjct: 422 ADVDIKELAVET--KNFSGAELEGLVRAA 448
>gb|AAF04745.2|AF102846_1 (AF102846) N-ethylmaleimide-sensitive factor [Homo sapiens]
Length = 744
Score = 92.8 bits (227), Expect = 5e-18
Identities = 84/269 (31%), Positives = 137/269 (50%), Gaps = 37/269 (13%)
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKRSTITWN----DIGGL-REAKKLIAQAIGLSIAKS 116
EKA+N GK + + +++I WN IGGL +E + +A +
Sbjct: 186 EKAENSSLNLIGKAKTKENRQSIINPD---WNFEKMGIGGLDKEFSDIFRRAFAFRVFPP 242
Query: 117 PIEPP------QGILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYFGESSKLI 169
I +GILL+GPPG GK+LLA + LNA V ++L+KY GES I
Sbjct: 243 EIVEQMGCIHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANI 302
Query: 170 SALFSLA----RQLSPS----VIFIDEVDSLTMKRVSLDDAA---RRMIGTLLAEMDGFK 218
LF+ A R+L + +I DE+D++ +R S+ + ++ LL+++DG
Sbjct: 303 RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGV- 361
Query: 219 ERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIH---LRG---IH 270
E+ + ++V+ TN P +DEA+L RL +++ + LPD ++I IH +RG +
Sbjct: 362 EQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLS 421
Query: 271 YDVPLSRLAKEAVKRLYSGREIANVVKLA 299
DV + LA E + +SG E+ +V+ A
Sbjct: 422 ADVDIKELAVET--KNFSGAELEGLVRAA 448
>pir||S04235 vesicular fusion protein NSF - Chinese hamster (fragment)
>gi|49518|emb|CAA33678.1| (X15652) N-ethylmaleimide
sensitive fusion protein [Cricetulus longicaudatus]
>gi|226383|prf||1509333A NEM sensitive fusion protein
[Cricetulus griseus]
Length = 752
Score = 92.4 bits (226), Expect = 7e-18
Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 37/269 (13%)
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKRSTITWN----DIGGL-REAKKLIAQAIGLSIAKS 116
EKA+N GK + + +++I WN IGGL +E + +A +
Sbjct: 194 EKAENSSLNLIGKAKTKENRQSIINPD---WNFEKMGIGGLDKEFSDIFRRAFASRVFPP 250
Query: 117 PI------EPPQGILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYFGESSKLI 169
I + +GILL+GPPG GK+LLA + LNA V ++L+KY GES I
Sbjct: 251 EIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANI 310
Query: 170 SALFSLA----RQLSPS----VIFIDEVDSLTMKRVSLDDAA---RRMIGTLLAEMDGFK 218
LF+ A R+L + +I DE+D++ +R S+ + ++ LL+++DG
Sbjct: 311 RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGV- 369
Query: 219 ERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIH---LRG---IH 270
E+ + ++V+ TN P +DEA+L RL +++ + LPD ++I IH +RG +
Sbjct: 370 EQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLS 429
Query: 271 YDVPLSRLAKEAVKRLYSGREIANVVKLA 299
DV + LA E + +SG E+ +V+ A
Sbjct: 430 ADVDIKELAVET--KNFSGAELEGLVRAA 456
>sp|P18708|NSF_CRIGR VESICULAR-FUSION PROTEIN NSF (N-ETHYLMALEIMIDE-SENSITIVE FUSION
PROTEIN) (NEM-SENSITIVE FUSION PROTEIN)
Length = 744
Score = 92.4 bits (226), Expect = 7e-18
Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 37/269 (13%)
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKRSTITWN----DIGGL-REAKKLIAQAIGLSIAKS 116
EKA+N GK + + +++I WN IGGL +E + +A +
Sbjct: 186 EKAENSSLNLIGKAKTKENRQSIINPD---WNFEKMGIGGLDKEFSDIFRRAFASRVFPP 242
Query: 117 PI------EPPQGILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYFGESSKLI 169
I + +GILL+GPPG GK+LLA + LNA V ++L+KY GES I
Sbjct: 243 EIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANI 302
Query: 170 SALFSLA----RQLSPS----VIFIDEVDSLTMKRVSLDDAA---RRMIGTLLAEMDGFK 218
LF+ A R+L + +I DE+D++ +R S+ + ++ LL+++DG
Sbjct: 303 RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGV- 361
Query: 219 ERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIH---LRG---IH 270
E+ + ++V+ TN P +DEA+L RL +++ + LPD ++I IH +RG +
Sbjct: 362 EQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLS 421
Query: 271 YDVPLSRLAKEAVKRLYSGREIANVVKLA 299
DV + LA E + +SG E+ +V+ A
Sbjct: 422 ADVDIKELAVET--KNFSGAELEGLVRAA 448
>gi|6679140 N-ethylmaleimide sensitive fusion protein [Mus musculus]
>gi|1171774|sp|P46460|NSF_MOUSE VESICULAR-FUSION PROTEIN
NSF (N-ETHYLMALEIMIDE-SENSITIVE FUSION PROTEIN)
(NEM-SENSITIVE FUSION PROTEIN) (SKD2 PROTEIN)
>gi|557878|gb|AAA50498.1| (U10120) SKD2 [Mus musculus]
Length = 744
Score = 92.4 bits (226), Expect = 7e-18
Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 37/269 (13%)
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKRSTITWN----DIGGL-REAKKLIAQAIGLSIAKS 116
EKA+N GK + + +++I WN IGGL +E + +A +
Sbjct: 186 EKAENSSLNLIGKAKTKENRQSIINPD---WNFEKMGIGGLDKEFSDIFRRAFASRVFPP 242
Query: 117 PI------EPPQGILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYFGESSKLI 169
I + +GILL+GPPG GK+LLA + LNA V ++L+KY GES I
Sbjct: 243 EIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANI 302
Query: 170 SALFSLA----RQLSPS----VIFIDEVDSLTMKRVSLDDAA---RRMIGTLLAEMDGFK 218
LF+ A R+L + +I DE+D++ +R S+ + ++ LL+++DG
Sbjct: 303 RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGV- 361
Query: 219 ERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIH---LRG---IH 270
E+ + ++V+ TN P +DEA+L RL +++ + LPD ++I IH +RG +
Sbjct: 362 EQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLS 421
Query: 271 YDVPLSRLAKEAVKRLYSGREIANVVKLA 299
DV + LA E + +SG E+ +V+ A
Sbjct: 422 ADVDIKELAVET--KNFSGAELEGLVRAA 448
>gb|AAD39485.1|AF142097_1 (AF142097) N-ethylmaleimide sensitive factor [Rattus norvegicus]
>gi|6007811|gb|AAF01051.1|AF189019_1 (AF189019)
N-ethylmaleimide sensitive factor [Rattus norvegicus]
Length = 744
Score = 92.4 bits (226), Expect = 7e-18
Identities = 84/269 (31%), Positives = 138/269 (51%), Gaps = 37/269 (13%)
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKRSTITWN----DIGGL-REAKKLIAQAIGLSIAKS 116
EKA+N GK + + +++I WN IGGL +E + +A +
Sbjct: 186 EKAENSSLNLIGKAKTKENRQSIINPD---WNFEKMGIGGLDKEFSDIFRRAFASRVFPP 242
Query: 117 PI------EPPQGILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYFGESSKLI 169
I + +GILL+GPPG GK+LLA + LNA V ++L+KY GES I
Sbjct: 243 EIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANI 302
Query: 170 SALFSLA----RQLSPS----VIFIDEVDSLTMKRVSLDDAA---RRMIGTLLAEMDGFK 218
LF+ A R+L + +I DE+D++ +R S+ + ++ LL+++DG
Sbjct: 303 RKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGV- 361
Query: 219 ERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIH---LRG---IH 270
E+ + ++V+ TN P +DEA+L RL +++ + LPD ++I IH +RG +
Sbjct: 362 EQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLS 421
Query: 271 YDVPLSRLAKEAVKRLYSGREIANVVKLA 299
DV + LA E + +SG E+ +V+ A
Sbjct: 422 ADVDIKELAVET--KNFSGAELEGLVRAA 448
>gb|AAC46844.1| (U28836) N-ethylmaleimide sensitive fusion protein-2 [Drosophila
melanogaster]
Length = 744
Score = 88.9 bits (217), Expect = 8e-17
Identities = 88/303 (29%), Positives = 145/303 (47%), Gaps = 54/303 (17%)
Query: 58 KKWEEKAKNVRKRREGKNEYFDKLKALIKRSTIT--WN----DIGGLREAKKLIAQAIGL 111
+K E N++ R +GK ++++S I W+ IGGL + I +
Sbjct: 183 EKAENSVLNLQGRSKGK---------IVRQSIINPDWDFGKMGIGGLDKEFNAIFRRAFA 233
Query: 112 SIAKSP-------IEPPQGILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYFG 163
S P I+ +GILL+GPPGTGK+L+A + LNA V +L KY G
Sbjct: 234 SRVFPPELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVG 293
Query: 164 ESSKLISALFSLA----RQLSPS----VIFIDEVDSLTMKRVSL---DDAARRMIGTLLA 212
ES I LF+ A ++L P+ +I DE+D++ R S+ ++ LLA
Sbjct: 294 ESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGSVAGNSGVHDTVVNQLLA 353
Query: 213 EMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLR--- 267
++DG E+ + ++V+ TN +DEA+L RL +++ + LP+ V+I IH +
Sbjct: 354 KIDGV-EQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMR 412
Query: 268 ---GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM---------NPELSDPL 315
I DV + +A A + +SG E+ +V+ A + + +PE + L
Sbjct: 413 DFNKIASDVDNNEIA--AKTKNFSGAELEGLVRAAQSTAMNRLIKADSKVHVDPEAMEKL 470
Query: 316 RVS 318
RV+
Sbjct: 471 RVT 473
>sp|P54351|NSF2_DROME VESICULAR-FUSION PROTEIN NSF2 (N-ETHYLMALEIMIDE-SENSITIVE FUSION
PROTEIN 2) (NEM-SENSITIVE FUSION PROTEIN 2) (DNSF-2)
>gi|973317|gb|AAA75044.1| (U30502) Drosophila
N-ethylmaleimide-sensitive fusion protein 2 [Drosophila
melanogaster]
Length = 752
Score = 88.9 bits (217), Expect = 8e-17
Identities = 88/303 (29%), Positives = 145/303 (47%), Gaps = 54/303 (17%)
Query: 58 KKWEEKAKNVRKRREGKNEYFDKLKALIKRSTIT--WN----DIGGLREAKKLIAQAIGL 111
+K E N++ R +GK ++++S I W+ IGGL + I +
Sbjct: 191 EKAENSVLNLQGRSKGK---------IVRQSIINPDWDFGKMGIGGLDKEFNAIFRRAFA 241
Query: 112 SIAKSP-------IEPPQGILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYFG 163
S P I+ +GILL+GPPGTGK+L+A + LNA V +L KY G
Sbjct: 242 SRVFPPELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVG 301
Query: 164 ESSKLISALFSLA----RQLSPS----VIFIDEVDSLTMKRVSL---DDAARRMIGTLLA 212
ES I LF+ A ++L P+ +I DE+D++ R S+ ++ LLA
Sbjct: 302 ESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGSVAGNSGVHDTVVNQLLA 361
Query: 213 EMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLR--- 267
++DG E+ + ++V+ TN +DEA+L RL +++ + LP+ V+I IH +
Sbjct: 362 KIDGV-EQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMR 420
Query: 268 ---GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM---------NPELSDPL 315
I DV + +A A + +SG E+ +V+ A + + +PE + L
Sbjct: 421 DFNKIASDVDNNEIA--AKTKNFSGAELEGLVRAAQSTAMNRLIKADSKVHVDPEAMEKL 478
Query: 316 RVS 318
RV+
Sbjct: 479 RVT 481
>gb|AAF54995.1| (AE003702) Nsf2 gene product [Drosophila melanogaster]
Length = 1113
Score = 88.9 bits (217), Expect = 8e-17
Identities = 88/303 (29%), Positives = 145/303 (47%), Gaps = 54/303 (17%)
Query: 58 KKWEEKAKNVRKRREGKNEYFDKLKALIKRSTIT--WN----DIGGLREAKKLIAQAIGL 111
+K E N++ R +GK ++++S I W+ IGGL + I +
Sbjct: 552 EKAENSVLNLQGRSKGK---------IVRQSIINPDWDFGKMGIGGLDKEFNAIFRRAFA 602
Query: 112 SIAKSP-------IEPPQGILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYFG 163
S P I+ +GILL+GPPGTGK+L+A + LNA V +L KY G
Sbjct: 603 SRVFPPELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVG 662
Query: 164 ESSKLISALFSLA----RQLSPS----VIFIDEVDSLTMKRVSL---DDAARRMIGTLLA 212
ES I LF+ A ++L P+ +I DE+D++ R S+ ++ LLA
Sbjct: 663 ESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKARGSVAGNSGVHDTVVNQLLA 722
Query: 213 EMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLR--- 267
++DG E+ + ++V+ TN +DEA+L RL +++ + LP+ V+I IH +
Sbjct: 723 KIDGV-EQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMR 781
Query: 268 ---GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM---------NPELSDPL 315
I DV + +A A + +SG E+ +V+ A + + +PE + L
Sbjct: 782 DFNKIASDVDNNEIA--AKTKNFSGAELEGLVRAAQSTAMNRLIKADSKVHVDPEAMEKL 839
Query: 316 RVS 318
RV+
Sbjct: 840 RVT 842
>sp|P46461|NSF1_DROME VESICULAR-FUSION PROTEIN NSF1 (N-ETHYLMALEIMIDE-SENSITIVE FUSION
PROTEIN 1) (NEM-SENSITIVE FUSION PROTEIN 1) (DNSF-1)
(COMATOSE PROTEIN) >gi|507752|gb|AAA83413.1| (U09373)
N-ethylmaleimide-sensitive fusion protein [Drosophila
melanogaster]
Length = 745
Score = 87.8 bits (214), Expect = 2e-16
Identities = 85/304 (27%), Positives = 148/304 (47%), Gaps = 60/304 (19%)
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKRSTIT--WN----DIGGL-REAKKLIAQAIGLSIA 114
EKA+N +GK++ ++++S I W+ IGGL +E + +A
Sbjct: 186 EKAENSSLNLQGKSK-----GKVVRQSIINPDWDFGKMGIGGLDKEFNSIFRRAFA---- 236
Query: 115 KSPIEPPQ-----------GILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYF 162
S + PP+ GILL+GPPGTGK+L+A + LNA V +L KY
Sbjct: 237 -SRVFPPELVEQLGCKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYV 295
Query: 163 GESSKLISALFSLA----RQLSPS----VIFIDEVDSLTMKRVSL---DDAARRMIGTLL 211
GES + LF+ A ++L P+ +I DE+D++ +R S+ ++ LL
Sbjct: 296 GESEANVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKQRGSVAGNSGVHDTVVNQLL 355
Query: 212 AEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLR-- 267
++DG ++ + ++V+ TN +DEA+L RL +++ + LP+ V+I IH +
Sbjct: 356 TKIDGV-DQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRM 414
Query: 268 ----GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM---------NPELSDP 314
I+ DV +A A+ + +SG E+ +V+ A + + +PE +
Sbjct: 415 REFNKINDDVDNKEIA--ALTKNFSGAELEGLVRAAQSSAMNRLIKADAKVTVDPEAMEK 472
Query: 315 LRVS 318
L+V+
Sbjct: 473 LKVN 476
>gb|AAF48244.1| (AE003492) comt gene product [Drosophila melanogaster]
Length = 737
Score = 87.8 bits (214), Expect = 2e-16
Identities = 85/304 (27%), Positives = 148/304 (47%), Gaps = 60/304 (19%)
Query: 62 EKAKNVRKRREGKNEYFDKLKALIKRSTIT--WN----DIGGL-REAKKLIAQAIGLSIA 114
EKA+N +GK++ ++++S I W+ IGGL +E + +A
Sbjct: 178 EKAENSSLNLQGKSK-----GKVVRQSIINPDWDFGKMGIGGLDKEFNSIFRRAFA---- 228
Query: 115 KSPIEPPQ-----------GILLFGPPGTGKSLLASAVANSLNATFFS-VKASDLLSKYF 162
S + PP+ GILL+GPPGTGK+L+A + LNA V +L KY
Sbjct: 229 -SRVFPPELVEQLGCKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYV 287
Query: 163 GESSKLISALFSLA----RQLSPS----VIFIDEVDSLTMKRVSL---DDAARRMIGTLL 211
GES + LF+ A ++L P+ +I DE+D++ +R S+ ++ LL
Sbjct: 288 GESEANVRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKQRGSVAGNSGVHDTVVNQLL 347
Query: 212 AEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIFKIHLR-- 267
++DG ++ + ++V+ TN +DEA+L RL +++ + LP+ V+I IH +
Sbjct: 348 TKIDGV-DQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRM 406
Query: 268 ----GIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEM---------NPELSDP 314
I+ DV +A A+ + +SG E+ +V+ A + + +PE +
Sbjct: 407 REFNKINDDVDNKEIA--ALTKNFSGAELEGLVRAAQSSAMNRLIKADAKVTVDPEAMEK 464
Query: 315 LRVS 318
L+V+
Sbjct: 465 LKVN 468
>gb|AAF18300.1|AF118384_1 (AF118384) N-ethylmaleimide sensitive fusion protein [Manduca
sexta]
Length = 745
Score = 85.8 bits (209), Expect = 7e-16
Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 56/310 (18%)
Query: 53 LLEEAKKWEEKAKNVRKRREGKNEYFDKLKALIKRSTITWN----DIGGL-REAKKLIAQ 107
LL +A +KA+N GK + +++I W+ IGGL +E + +
Sbjct: 177 LLPDASVQFDKAENSSLNLVGKAKGKQPRQSIINPD---WDFGKMGIGGLDKEFNAIFRR 233
Query: 108 AIGLSIAKSPIEPPQ-----------GILLFGPPGTGKSLLASAVANSLNATFFS-VKAS 155
A S + PP+ GILLFGPPGTGK+L+A + LNA V
Sbjct: 234 AFA-----SRVFPPEVVEQLGCKHVKGILLFGPPGTGKTLMARQIGKMLNAREPKIVNGP 288
Query: 156 DLLSKYFGESSKLISALFSLA----RQLSPS----VIFIDEVDSLTMKRVSL---DDAAR 204
+L KY GES I LF+ A ++ P+ +I DE+D++ R S+
Sbjct: 289 QILDKYVGESEANIRPLFADAEEEEKRCGPNSGLHIIIFDEIDAICKARGSVGGNTGVHD 348
Query: 205 RMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVNSAVEIF 262
++ LL+++DG ++ + ++V+ TN +DEA+L RL +++ + LPD V+I
Sbjct: 349 TVVNQLLSKIDGV-DQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEIGLPDEKGRVQIL 407
Query: 263 KIH------LRGIHYDVPLSRLAKEAVKRLYSGREIANVVKLATMKMLE---------EM 307
IH + I DV LA A+ + +SG E+ +V+ A + E+
Sbjct: 408 NIHTKRMREYKKIAEDVDSMELA--ALTKNFSGAELEGLVRAAQSTAMNRLIKASSKVEV 465
Query: 308 NPELSDPLRV 317
+PE + L V
Sbjct: 466 DPEAMEKLMV 475
>pir||T18421 hypothetical protein C0140c - malaria parasite (Plasmodium
falciparum) >gi|3647351|emb|CAB10575.1| (Z97348)
PFC0140c (MAL3P1.10), N-ethylmaleimide-sensitive fusion
protein, len: 783 aa; Similarity to a number of
eukaryotic N-ethylmaleimide sensitive fusion proteins
(NSFs). Human NSF (SW:NSF_MOUSE). BLAST score: 1577, sum
P(2) = 2.4e-142, contains Pf>
Length = 783
Score = 78.4 bits (190), Expect = 1e-13
Identities = 87/343 (25%), Positives = 152/343 (43%), Gaps = 66/343 (19%)
Query: 40 RKIASENLSLSHILLEEAKKWEEKAKNVRKRREGKNEY-FDKLKALIKRSTITWNDIGGL 98
R I EN + + K ++K V K+ KN + F++L IG L
Sbjct: 210 RGILFENTECIFTSISDGGKLCIESKKVLKQNIIKNNFNFEEL------------GIGAL 257
Query: 99 REAKKLIAQAIGLS-------IAKSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFS 151
E K I + S I + I+ +G++L+GPPGTGK+L+A + +LNA
Sbjct: 258 DEEFKTIFRRTFASRIYPNYIIKQLSIKHVKGMILYGPPGTGKTLIARQIGKTLNAREPK 317
Query: 152 -VKASDLLSKYFGESSKLISALFSLARQLSPS--------VIFIDEVDSLTMKRVSLDDA 202
+ ++L+KY G+S + I LF A +I +DE+D++ +R ++ +
Sbjct: 318 IINGPEILNKYVGQSEENIRNLFKDAEMEYKQSGENSLLHIIILDEIDAICRQRGNVGSS 377
Query: 203 AR----RMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLPIRIYVPLPDVN 256
+ ++ LL+++DG + ++++ TN +DEA+L R + I + LP+
Sbjct: 378 STGVNDSVVNQLLSKIDGVNS-LNNILLIGMTNRIDLIDEALLRPGRFELHIEISLPNKE 436
Query: 257 SAVEIFKIHLRGIHY------DVPLSRLAKEAVKRLYSGREIANVVKLATMKMLEEMNPE 310
++I IH + + DV + LA+ +SG EI +V+ T+ E +
Sbjct: 437 GRIQILNIHTKNMRMSNKLSSDVNILELAERTPN--FSGAEIEGLVR-NTVSYAFERHIN 493
Query: 311 LSDPLRVSTLKGRDLTTRPLTLDDFKYAMARIKSPITKSDVKK 353
+D T+P+ DD ITK+D K
Sbjct: 494 FND------------LTKPINADDIM---------ITKNDFMK 515
>gb|AAF26780.1|AC016829_4 (AC016829) unknown protein [Arabidopsis thaliana]
Length = 1293
Score = 69.5 bits (167), Expect = 6e-11
Identities = 51/191 (26%), Positives = 93/191 (47%), Gaps = 15/191 (7%)
Query: 63 KAKNVRKRREGKNEY---FDKLKALIKRSTITWNDIGGLREAKKLIAQAIGL-----SIA 114
K + +KR+ G + FD++K +K I + + ++ I + + +
Sbjct: 752 KRRIKQKRKAGIDPIKTAFDRMKR-VKNPPIPLKNFASIESMREEINEVVAFLQNPKAFQ 810
Query: 115 KSPIEPPQGILLFGPPGTGKSLLASAVANSLNATFFSVKASDL-LSKYFGESSKLISALF 173
+ P+G+L+ G GTGK+ LA A+A +V+A +L + G+S+ + LF
Sbjct: 811 EMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSAANVRELF 870
Query: 174 SLARQLSPSVIFIDEVDSLTMKRVSLDDAARR----MIGTLLAEMDGFKERKDKVIVLTA 229
AR L+P +IF+++ D R ++ I LL E+DGF E++D V+++
Sbjct: 871 QTARDLAPVIIFVEDFDLFAGVRGKFVHTKQQDHESFINQLLVELDGF-EKQDGVVLMAT 929
Query: 230 TNAPWDLDEAM 240
T +DEA+
Sbjct: 930 TRNHKQIDEAL 940
>pir||S74396 hypothetical protein slr0480 - Synechocystis sp. (strain PCC 6803)
>gi|1001171|dbj|BAA10314.1| (D64001) hypothetical
protein [Synechocystis sp.]
Length = 499
Score = 69.1 bits (166), Expect = 7e-11
Identities = 75/295 (25%), Positives = 122/295 (40%), Gaps = 35/295 (11%)
Query: 13 QEEFERALSLGHYDKARLIALRCAELLRKIASENLSLSHILLEEAKKWEEKAKNVRKRRE 72
++E+ RA ++ R + RC ++ ++++ L EEK +++R+
Sbjct: 167 RDEWSRAAQGLSMERIRRVLARCLADHGQLGADDVELM---------LEEKRQSIRQ--- 214
Query: 73 GKNEYFDKLKALIKRSTITWNDIGGLREAKKLIAQ---AIGLSIAKSPIEPPQGILLFGP 129
+ D A + S DIGGL K + + A + + P+G+LL G
Sbjct: 215 --TQILDFYPASERIS-----DIGGLDNLKDWLLRRGGAFSEQARRYGLPYPRGLLLAGI 267
Query: 130 PGTGKSLLASAVANSLNATFFSVKASDLLSKYFGESSKLISALFSLARQLSPSVIFIDEV 189
GTGKSL A A+A+ + + L GES + +LA L+P V +IDE+
Sbjct: 268 QGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGESEARTRQMINLAEALAPCVFWIDEI 327
Query: 190 DSLTMKRVSLDD--AARRMIGTLLAEMDGFKERKDKVIVLTATNAPWDLDEAML--SRLP 245
D S D R+ G + + E+ V V+ N L +L R
Sbjct: 328 DKAFGSMDSHGDGGTTSRVFGAFITWL---AEKTSPVFVVATANNVQSLPPELLRKGRFD 384
Query: 246 IRIYVPLPDVNSAVEIFKIHLRGIH----YDVPLSRLAKEAVKRLYSGREIANVV 296
+V LP+ IF +HL + D + RLA E +SG EI ++
Sbjct: 385 EIFFVGLPNKTEREAIFSVHLNRLRPHKMADYDIHRLAYETPD--FSGAEIEQIL 437
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.135 0.374
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119756089
Number of Sequences: 2977
Number of extensions: 4628545
Number of successful extensions: 20895
Number of sequences better than 1.0e-10: 495
Number of HSP's better than 0.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 19265
Number of HSP's gapped (non-prelim): 665
length of query: 363
length of database: 189,106,746
effective HSP length: 60
effective length of query: 303
effective length of database: 153,197,526
effective search space: 46418850378
effective search space used: 46418850378
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)